Query 038067
Match_columns 510
No_of_seqs 369 out of 4050
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hws_A ATP-dependent CLP prote 100.0 1.5E-43 5E-48 367.2 22.8 346 71-471 2-349 (363)
2 1um8_A ATP-dependent CLP prote 100.0 3.4E-39 1.2E-43 335.7 28.9 352 70-472 7-366 (376)
3 1g41_A Heat shock protein HSLU 100.0 3E-38 1E-42 333.9 26.7 286 73-467 4-429 (444)
4 1ofh_A ATP-dependent HSL prote 100.0 3.2E-28 1.1E-32 244.2 23.6 285 73-466 4-294 (310)
5 1r6b_X CLPA protein; AAA+, N-t 100.0 2.7E-27 9.1E-32 267.5 22.0 277 56-444 428-719 (758)
6 4fcw_A Chaperone protein CLPB; 99.9 1.5E-25 5.2E-30 225.5 22.3 261 75-444 8-282 (311)
7 3pxi_A Negative regulator of g 99.9 1.2E-25 4.1E-30 254.0 20.0 264 54-445 459-729 (758)
8 1qvr_A CLPB protein; coiled co 99.9 1.9E-25 6.3E-30 255.6 19.7 279 55-444 527-823 (854)
9 4b4t_J 26S protease regulatory 99.9 2E-21 7E-26 202.4 17.9 189 162-443 181-372 (405)
10 3m6a_A ATP-dependent protease 99.9 5.5E-21 1.9E-25 208.2 16.7 207 162-446 107-321 (543)
11 4b4t_I 26S protease regulatory 99.8 1.5E-20 5E-25 196.8 18.7 188 162-443 215-406 (437)
12 3syl_A Protein CBBX; photosynt 99.8 1.6E-20 5.5E-25 188.7 18.0 234 74-445 21-267 (309)
13 4b4t_M 26S protease regulatory 99.8 1.6E-20 5.6E-25 198.1 17.6 189 162-443 214-405 (434)
14 4b4t_H 26S protease regulatory 99.8 3.1E-20 1.1E-24 195.9 19.1 189 162-443 242-433 (467)
15 4b4t_L 26S protease subunit RP 99.8 3.1E-20 1.1E-24 196.1 19.1 189 162-443 214-405 (437)
16 4b4t_K 26S protease regulatory 99.8 4.2E-20 1.4E-24 194.7 19.1 189 162-443 205-397 (428)
17 1xwi_A SKD1 protein; VPS4B, AA 99.8 7E-19 2.4E-23 179.4 22.0 191 162-445 44-235 (322)
18 3eie_A Vacuolar protein sortin 99.8 2.8E-19 9.4E-24 182.0 18.2 190 162-444 50-239 (322)
19 2qp9_X Vacuolar protein sortin 99.8 6.6E-19 2.3E-23 181.9 18.9 190 162-444 83-272 (355)
20 1ojl_A Transcriptional regulat 99.8 3.1E-19 1.1E-23 180.6 14.4 200 162-438 24-233 (304)
21 2bjv_A PSP operon transcriptio 99.8 1.4E-18 4.8E-23 171.3 17.4 199 162-439 28-239 (265)
22 2zan_A Vacuolar protein sortin 99.8 3.8E-18 1.3E-22 181.4 18.9 190 162-444 166-356 (444)
23 3vfd_A Spastin; ATPase, microt 99.8 1E-17 3.5E-22 174.8 18.9 192 162-445 147-338 (389)
24 3pfi_A Holliday junction ATP-d 99.8 1.8E-17 6E-22 168.9 18.8 182 162-441 54-235 (338)
25 3d8b_A Fidgetin-like protein 1 99.8 1.8E-17 6.3E-22 171.1 19.1 192 162-445 116-307 (357)
26 3cf0_A Transitional endoplasmi 99.7 2.3E-17 7.8E-22 166.4 17.9 190 162-444 48-240 (301)
27 3b9p_A CG5977-PA, isoform A; A 99.7 3E-17 1E-21 164.2 18.4 193 162-445 53-245 (297)
28 3cf2_A TER ATPase, transitiona 99.7 1.3E-18 4.4E-23 195.7 8.0 190 162-444 510-702 (806)
29 3cf2_A TER ATPase, transitiona 99.7 2.6E-17 8.9E-22 185.2 15.3 187 162-443 237-425 (806)
30 3dzd_A Transcriptional regulat 99.7 2.3E-17 7.8E-22 171.3 13.2 201 161-438 150-359 (368)
31 3t15_A Ribulose bisphosphate c 99.7 1.7E-17 5.9E-22 166.9 11.2 160 162-385 35-196 (293)
32 1ny5_A Transcriptional regulat 99.7 6.1E-17 2.1E-21 169.2 15.2 200 161-438 158-368 (387)
33 1lv7_A FTSH; alpha/beta domain 99.7 4.7E-16 1.6E-20 152.5 20.1 188 162-443 44-235 (257)
34 2ce7_A Cell division protein F 99.7 2E-16 7E-21 169.0 18.0 187 162-442 48-238 (476)
35 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.6E-16 5.3E-21 155.4 15.7 188 162-441 38-230 (262)
36 3h4m_A Proteasome-activating n 99.7 4.4E-16 1.5E-20 154.6 18.2 190 162-443 50-241 (285)
37 1g8p_A Magnesium-chelatase 38 99.7 2E-16 6.9E-21 161.2 15.6 204 164-442 46-304 (350)
38 1hqc_A RUVB; extended AAA-ATPa 99.7 7.1E-16 2.4E-20 155.6 18.9 179 162-437 37-215 (324)
39 3pvs_A Replication-associated 99.7 3.2E-16 1.1E-20 166.6 16.3 171 164-439 51-221 (447)
40 3hu3_A Transitional endoplasmi 99.7 4.1E-16 1.4E-20 167.5 16.3 189 162-445 237-427 (489)
41 2r44_A Uncharacterized protein 99.7 2.3E-16 8E-21 160.4 12.7 231 75-442 18-279 (331)
42 3uk6_A RUVB-like 2; hexameric 99.7 1.6E-15 5.5E-20 155.9 19.1 189 162-443 69-313 (368)
43 3f9v_A Minichromosome maintena 99.6 5.9E-17 2E-21 178.2 4.1 218 162-442 326-569 (595)
44 2dhr_A FTSH; AAA+ protein, hex 99.6 6.5E-15 2.2E-19 158.3 16.9 187 162-442 63-253 (499)
45 1d2n_A N-ethylmaleimide-sensit 99.6 7E-15 2.4E-19 145.4 14.6 177 162-437 63-246 (272)
46 3u61_B DNA polymerase accessor 99.6 1.3E-14 4.5E-19 146.8 15.7 172 162-437 47-220 (324)
47 2x8a_A Nuclear valosin-contain 99.6 1.3E-14 4.5E-19 144.5 15.2 193 162-445 43-238 (274)
48 2r62_A Cell division protease 99.6 5.5E-16 1.9E-20 152.6 4.7 187 162-440 43-233 (268)
49 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.6E-14 1.2E-18 152.6 18.5 229 75-442 13-268 (500)
50 1ixz_A ATP-dependent metallopr 99.6 4.9E-14 1.7E-18 137.8 16.5 187 163-443 49-239 (254)
51 3te6_A Regulatory protein SIR3 99.6 1.6E-14 5.3E-19 146.8 12.4 196 162-443 44-289 (318)
52 2chg_A Replication factor C sm 99.5 4.8E-14 1.7E-18 132.5 14.4 164 164-438 39-209 (226)
53 1l8q_A Chromosomal replication 99.5 1.6E-14 5.3E-19 146.5 11.8 173 163-439 37-214 (324)
54 3n70_A Transport activator; si 99.5 1.1E-14 3.7E-19 130.9 9.0 76 162-266 23-101 (145)
55 2c9o_A RUVB-like 1; hexameric 99.5 5.6E-14 1.9E-18 149.7 15.4 76 162-241 62-139 (456)
56 1iy2_A ATP-dependent metallopr 99.5 7.4E-14 2.5E-18 138.7 15.1 186 163-442 73-262 (278)
57 1ypw_A Transitional endoplasmi 99.5 1.9E-15 6.5E-20 171.6 2.2 190 162-444 510-702 (806)
58 1iqp_A RFCS; clamp loader, ext 99.5 1.4E-13 4.8E-18 138.2 14.9 165 164-437 47-216 (327)
59 2qby_B CDC6 homolog 3, cell di 99.5 1.9E-13 6.4E-18 140.8 15.1 179 162-439 44-251 (384)
60 1in4_A RUVB, holliday junction 99.5 9.2E-13 3.2E-17 134.6 19.9 183 162-442 50-232 (334)
61 3k1j_A LON protease, ATP-depen 99.5 1.4E-13 4.8E-18 151.6 14.7 142 222-437 195-352 (604)
62 3co5_A Putative two-component 99.5 9.5E-15 3.2E-19 131.1 3.9 75 162-266 26-100 (143)
63 1sxj_D Activator 1 41 kDa subu 99.5 8.9E-14 3E-18 141.6 11.5 169 164-439 59-241 (353)
64 2chq_A Replication factor C sm 99.5 7.5E-14 2.6E-18 139.8 10.7 165 164-437 39-208 (319)
65 1njg_A DNA polymerase III subu 99.5 5E-13 1.7E-17 126.8 15.4 172 163-437 45-232 (250)
66 1jbk_A CLPB protein; beta barr 99.5 8.8E-14 3E-18 127.6 9.8 142 162-383 42-194 (195)
67 2z4s_A Chromosomal replication 99.5 1.8E-13 6E-18 145.3 12.6 178 163-442 130-315 (440)
68 2v1u_A Cell division control p 99.5 1.2E-13 4.2E-18 141.7 11.0 189 162-441 43-257 (387)
69 1fnn_A CDC6P, cell division co 99.5 9.3E-13 3.2E-17 135.5 16.6 185 165-442 46-256 (389)
70 3bos_A Putative DNA replicatio 99.4 3.8E-13 1.3E-17 128.7 10.8 171 162-442 51-226 (242)
71 1jr3_A DNA polymerase III subu 99.4 2E-12 6.9E-17 132.5 15.2 164 163-437 38-225 (373)
72 1sxj_B Activator 1 37 kDa subu 99.4 8.7E-13 3E-17 132.2 12.1 163 164-437 43-213 (323)
73 3f8t_A Predicted ATPase involv 99.4 1.5E-12 5.1E-17 137.4 13.5 208 163-446 239-467 (506)
74 1qvr_A CLPB protein; coiled co 99.4 5.7E-12 1.9E-16 144.1 18.3 168 162-419 190-368 (854)
75 1ypw_A Transitional endoplasmi 99.4 6E-12 2E-16 142.9 17.1 145 162-385 237-383 (806)
76 1sxj_A Activator 1 95 kDa subu 99.4 9.1E-13 3.1E-17 142.5 9.8 175 162-437 76-256 (516)
77 3pxg_A Negative regulator of g 99.4 4.2E-12 1.4E-16 135.7 14.7 152 162-419 200-361 (468)
78 1sxj_C Activator 1 40 kDa subu 99.4 3.8E-12 1.3E-16 129.9 13.1 162 164-436 47-215 (340)
79 1sxj_E Activator 1 40 kDa subu 99.3 3.8E-12 1.3E-16 129.9 12.0 65 357-438 177-242 (354)
80 2qby_A CDC6 homolog 1, cell di 99.3 8.7E-12 3E-16 127.6 14.5 187 162-441 44-253 (386)
81 2p65_A Hypothetical protein PF 99.3 3.7E-12 1.3E-16 116.6 8.9 95 162-266 42-149 (187)
82 1a5t_A Delta prime, HOLB; zinc 99.3 3.1E-11 1.1E-15 123.1 15.2 159 162-433 23-205 (334)
83 3pxi_A Negative regulator of g 99.3 1.3E-11 4.4E-16 139.3 12.3 152 162-419 200-361 (758)
84 1r6b_X CLPA protein; AAA+, N-t 99.3 1.1E-11 3.7E-16 139.9 10.7 169 162-419 206-385 (758)
85 2gno_A DNA polymerase III, gam 99.2 3.6E-11 1.2E-15 121.5 10.7 126 164-385 19-150 (305)
86 1w5s_A Origin recognition comp 99.0 3.3E-09 1.1E-13 109.8 13.8 193 163-440 50-273 (412)
87 4akg_A Glutathione S-transfera 98.7 1.4E-08 4.9E-13 126.5 9.7 154 162-387 1266-1431(2695)
88 2qen_A Walker-type ATPase; unk 98.7 8.6E-07 2.9E-11 89.1 18.5 33 164-198 32-64 (350)
89 3ec2_A DNA replication protein 98.5 2.3E-08 7.8E-13 92.1 2.8 69 162-240 37-112 (180)
90 4akg_A Glutathione S-transfera 98.4 1.8E-06 6.3E-11 107.9 16.0 69 162-243 644-712 (2695)
91 1jr3_D DNA polymerase III, del 98.3 1.3E-06 4.3E-11 88.9 9.6 169 162-438 17-190 (343)
92 2kjq_A DNAA-related protein; s 98.3 9.8E-07 3.4E-11 79.4 6.8 71 162-266 35-108 (149)
93 2fna_A Conserved hypothetical 98.3 4.4E-06 1.5E-10 83.9 12.1 36 164-199 31-66 (357)
94 2w58_A DNAI, primosome compone 98.2 5.7E-07 1.9E-11 84.0 4.3 37 164-200 55-94 (202)
95 3vkg_A Dynein heavy chain, cyt 98.2 1.5E-06 5.2E-11 109.4 8.9 152 162-385 1303-1467(3245)
96 1u0j_A DNA replication protein 98.2 5.1E-06 1.7E-10 81.9 9.6 26 163-188 104-129 (267)
97 1tue_A Replication protein E1; 98.0 3.2E-06 1.1E-10 80.2 4.9 78 163-272 58-135 (212)
98 2qgz_A Helicase loader, putati 97.9 2.8E-06 9.7E-11 85.5 2.8 38 163-200 152-193 (308)
99 2vhj_A Ntpase P4, P4; non- hyd 97.9 1.2E-05 4.1E-10 81.3 5.6 74 162-243 122-197 (331)
100 3vkg_A Dynein heavy chain, cyt 97.8 0.00028 9.7E-09 89.3 16.8 69 162-243 603-671 (3245)
101 3cmw_A Protein RECA, recombina 97.7 4.5E-05 1.6E-09 91.8 8.9 102 162-267 1081-1203(1706)
102 3trf_A Shikimate kinase, SK; a 97.5 5.1E-05 1.7E-09 69.5 4.1 34 163-196 5-38 (185)
103 1qhx_A CPT, protein (chloramph 97.5 5.5E-05 1.9E-09 68.7 4.3 37 163-199 3-39 (178)
104 1ye8_A Protein THEP1, hypothet 97.4 0.00034 1.2E-08 64.5 8.6 27 165-191 2-28 (178)
105 3vaa_A Shikimate kinase, SK; s 97.4 9.2E-05 3.1E-09 69.0 4.2 34 162-195 24-57 (199)
106 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5E-09 65.1 4.6 31 165-195 3-33 (173)
107 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4E-09 66.1 3.9 32 164-195 8-39 (168)
108 2iyv_A Shikimate kinase, SK; t 97.3 0.00014 4.6E-09 66.6 3.9 32 164-195 3-34 (184)
109 1via_A Shikimate kinase; struc 97.3 0.00013 4.4E-09 66.4 3.4 30 165-194 6-35 (175)
110 3cmu_A Protein RECA, recombina 97.3 0.00058 2E-08 83.4 9.8 77 162-242 1426-1519(2050)
111 3iij_A Coilin-interacting nucl 97.2 0.00015 5.2E-09 66.1 3.7 34 162-195 10-43 (180)
112 2rhm_A Putative kinase; P-loop 97.2 0.00019 6.4E-09 65.8 4.0 34 162-195 4-37 (193)
113 1kag_A SKI, shikimate kinase I 97.2 0.00017 6E-09 65.0 3.5 30 164-193 5-34 (173)
114 1y63_A LMAJ004144AAA protein; 97.2 0.00017 5.8E-09 66.4 3.3 34 162-195 9-43 (184)
115 2cdn_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 65.8 4.2 34 162-195 19-52 (201)
116 2orw_A Thymidine kinase; TMTK, 97.1 0.00056 1.9E-08 63.4 6.1 31 164-194 4-37 (184)
117 2r8r_A Sensor protein; KDPD, P 97.1 0.0041 1.4E-07 59.6 12.3 36 162-197 5-43 (228)
118 2c95_A Adenylate kinase 1; tra 97.1 0.00027 9.2E-09 64.9 3.8 34 162-195 8-41 (196)
119 1tev_A UMP-CMP kinase; ploop, 97.1 0.00026 9E-09 64.7 3.6 32 163-194 3-34 (196)
120 2r2a_A Uncharacterized protein 97.1 0.00082 2.8E-08 63.2 7.0 75 163-243 5-102 (199)
121 1e6c_A Shikimate kinase; phosp 97.1 0.00027 9.3E-09 63.6 3.5 32 164-195 3-34 (173)
122 2ehv_A Hypothetical protein PH 97.1 0.0029 1E-07 60.1 10.9 36 162-197 29-68 (251)
123 3lw7_A Adenylate kinase relate 97.1 0.00028 9.6E-09 63.0 3.4 30 164-194 2-31 (179)
124 3t61_A Gluconokinase; PSI-biol 97.1 0.00037 1.3E-08 64.8 4.3 33 163-195 18-50 (202)
125 2pt5_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 62.7 3.9 31 165-195 2-32 (168)
126 1aky_A Adenylate kinase; ATP:A 97.0 0.00032 1.1E-08 66.2 3.9 33 162-194 3-35 (220)
127 2ze6_A Isopentenyl transferase 97.0 0.00037 1.3E-08 67.8 4.4 33 165-197 3-35 (253)
128 3cm0_A Adenylate kinase; ATP-b 97.0 0.00025 8.5E-09 64.8 2.7 31 163-193 4-34 (186)
129 2bwj_A Adenylate kinase 5; pho 97.0 0.00037 1.3E-08 64.1 3.7 33 162-194 11-43 (199)
130 3be4_A Adenylate kinase; malar 97.0 0.00036 1.2E-08 65.9 3.6 32 163-194 5-36 (217)
131 1zp6_A Hypothetical protein AT 97.0 0.00033 1.1E-08 64.2 3.2 38 162-199 8-45 (191)
132 1qzm_A ATP-dependent protease 97.0 0.0034 1.2E-07 51.8 8.9 86 372-465 1-86 (94)
133 3dl0_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 65.0 3.8 31 165-195 2-32 (216)
134 1kht_A Adenylate kinase; phosp 97.0 0.00034 1.1E-08 63.8 3.0 25 164-188 4-28 (192)
135 1qf9_A UMP/CMP kinase, protein 97.0 0.0004 1.4E-08 63.3 3.5 32 163-194 6-37 (194)
136 3fb4_A Adenylate kinase; psych 97.0 0.00046 1.6E-08 64.7 4.0 31 165-195 2-32 (216)
137 1knq_A Gluconate kinase; ALFA/ 96.9 0.00049 1.7E-08 62.3 4.0 32 162-193 7-38 (175)
138 1ak2_A Adenylate kinase isoenz 96.9 0.00047 1.6E-08 65.9 3.8 33 162-194 15-47 (233)
139 2vli_A Antibiotic resistance p 96.9 0.00044 1.5E-08 62.8 3.3 30 163-192 5-34 (183)
140 1n0w_A DNA repair protein RAD5 96.9 0.0012 4.2E-08 62.5 6.6 37 162-198 23-68 (243)
141 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0041 1.4E-07 58.1 10.1 36 162-197 22-60 (235)
142 1zd8_A GTP:AMP phosphotransfer 96.9 0.00046 1.6E-08 65.5 3.5 32 163-194 7-38 (227)
143 1ly1_A Polynucleotide kinase; 96.9 0.00029 1E-08 63.6 1.7 26 164-189 3-29 (181)
144 1ukz_A Uridylate kinase; trans 96.9 0.00053 1.8E-08 63.6 3.5 34 162-195 14-47 (203)
145 3tlx_A Adenylate kinase 2; str 96.9 0.00054 1.8E-08 66.1 3.7 34 162-195 28-61 (243)
146 2pez_A Bifunctional 3'-phospho 96.8 0.00098 3.3E-08 60.6 5.2 38 162-199 4-44 (179)
147 2b8t_A Thymidine kinase; deoxy 96.8 0.003 1E-07 60.4 8.8 34 162-195 11-47 (223)
148 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0021 7.3E-08 62.5 7.9 38 163-200 4-44 (260)
149 1zak_A Adenylate kinase; ATP:A 96.8 0.0004 1.4E-08 65.6 2.5 31 163-193 5-35 (222)
150 1e4v_A Adenylate kinase; trans 96.8 0.00067 2.3E-08 63.8 4.0 30 165-194 2-31 (214)
151 3upu_A ATP-dependent DNA helic 96.8 0.0025 8.5E-08 67.3 8.7 24 164-187 46-69 (459)
152 3sr0_A Adenylate kinase; phosp 96.8 0.0008 2.7E-08 63.6 4.4 28 165-192 2-29 (206)
153 4eun_A Thermoresistant glucoki 96.8 0.00075 2.6E-08 62.8 4.1 36 162-199 28-63 (200)
154 2p5t_B PEZT; postsegregational 96.8 0.00064 2.2E-08 65.9 3.7 39 162-200 31-69 (253)
155 2pbr_A DTMP kinase, thymidylat 96.7 0.0013 4.5E-08 60.0 5.1 31 165-195 2-35 (195)
156 3umf_A Adenylate kinase; rossm 96.7 0.00093 3.2E-08 63.8 4.1 31 162-192 28-58 (217)
157 1cke_A CK, MSSA, protein (cyti 96.7 0.00083 2.8E-08 63.3 3.7 30 164-193 6-35 (227)
158 3crm_A TRNA delta(2)-isopenten 96.7 0.00091 3.1E-08 67.6 3.9 35 164-198 6-40 (323)
159 1nks_A Adenylate kinase; therm 96.7 0.0011 3.8E-08 60.3 4.0 32 165-196 3-37 (194)
160 2if2_A Dephospho-COA kinase; a 96.7 0.00089 3E-08 62.1 3.4 31 165-196 3-33 (204)
161 2zr9_A Protein RECA, recombina 96.6 0.0033 1.1E-07 64.2 7.9 80 162-241 60-152 (349)
162 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4.2E-08 60.7 4.1 28 165-192 2-29 (205)
163 1gvn_B Zeta; postsegregational 96.6 0.001 3.4E-08 66.1 3.7 38 162-199 32-69 (287)
164 3uie_A Adenylyl-sulfate kinase 96.6 0.0014 4.7E-08 61.0 4.4 38 162-199 24-64 (200)
165 3nwj_A ATSK2; P loop, shikimat 96.6 0.001 3.6E-08 64.8 3.7 33 163-195 48-80 (250)
166 2xb4_A Adenylate kinase; ATP-b 96.6 0.0011 3.8E-08 62.9 3.6 30 165-194 2-31 (223)
167 3ake_A Cytidylate kinase; CMP 96.6 0.0014 4.6E-08 60.7 4.1 31 165-195 4-34 (208)
168 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 60.8 3.9 34 163-196 4-38 (204)
169 2z0h_A DTMP kinase, thymidylat 96.5 0.0019 6.6E-08 59.1 4.8 31 166-196 3-36 (197)
170 3e1s_A Exodeoxyribonuclease V, 96.5 0.0041 1.4E-07 67.7 7.8 34 162-195 203-239 (574)
171 2grj_A Dephospho-COA kinase; T 96.5 0.0014 4.9E-08 61.1 3.5 32 164-195 13-44 (192)
172 2z43_A DNA repair and recombin 96.5 0.0046 1.6E-07 62.2 7.5 37 162-198 106-151 (324)
173 3a8t_A Adenylate isopentenyltr 96.5 0.001 3.5E-08 67.6 2.7 35 164-198 41-75 (339)
174 1uf9_A TT1252 protein; P-loop, 96.5 0.0014 4.8E-08 60.4 3.5 33 162-195 7-39 (203)
175 1jjv_A Dephospho-COA kinase; P 96.5 0.0013 4.3E-08 61.2 3.1 30 165-195 4-33 (206)
176 1q3t_A Cytidylate kinase; nucl 96.5 0.0017 5.7E-08 62.1 3.9 32 162-193 15-46 (236)
177 2wwf_A Thymidilate kinase, put 96.4 0.001 3.4E-08 61.9 2.3 31 162-192 9-39 (212)
178 3lda_A DNA repair protein RAD5 96.4 0.0063 2.2E-07 63.3 8.3 37 162-198 177-222 (400)
179 4a74_A DNA repair and recombin 96.4 0.0078 2.7E-07 56.3 8.3 26 162-187 24-49 (231)
180 2plr_A DTMP kinase, probable t 96.4 0.0031 1E-07 58.3 5.1 28 163-190 4-31 (213)
181 3kl4_A SRP54, signal recogniti 96.4 0.0095 3.3E-07 62.5 9.4 37 162-198 96-135 (433)
182 3dm5_A SRP54, signal recogniti 96.4 0.01 3.5E-07 62.5 9.5 38 162-199 99-139 (443)
183 3r20_A Cytidylate kinase; stru 96.4 0.0025 8.4E-08 61.5 4.5 31 162-192 8-38 (233)
184 2bbw_A Adenylate kinase 4, AK4 96.3 0.0026 9E-08 61.0 4.6 31 162-192 26-56 (246)
185 3hr8_A Protein RECA; alpha and 96.3 0.0071 2.4E-07 61.9 7.6 79 162-242 60-153 (356)
186 1vht_A Dephospho-COA kinase; s 96.3 0.0021 7E-08 60.4 3.3 31 164-195 5-35 (218)
187 3foz_A TRNA delta(2)-isopenten 96.3 0.0023 7.8E-08 64.3 3.8 37 163-199 10-46 (316)
188 1nn5_A Similar to deoxythymidy 96.3 0.0015 5E-08 60.8 2.2 27 163-189 9-35 (215)
189 1uj2_A Uridine-cytidine kinase 96.2 0.0034 1.2E-07 60.5 4.9 39 162-200 21-67 (252)
190 2yvu_A Probable adenylyl-sulfa 96.2 0.0041 1.4E-07 56.8 5.2 38 162-199 12-52 (186)
191 1u94_A RECA protein, recombina 96.2 0.0079 2.7E-07 61.6 7.7 81 162-242 62-155 (356)
192 2h92_A Cytidylate kinase; ross 96.2 0.0025 8.6E-08 59.7 3.6 32 164-195 4-35 (219)
193 4e22_A Cytidylate kinase; P-lo 96.2 0.0034 1.2E-07 60.8 4.6 31 162-192 26-56 (252)
194 1g5t_A COB(I)alamin adenosyltr 96.2 0.041 1.4E-06 51.5 11.7 34 162-195 27-63 (196)
195 1xp8_A RECA protein, recombina 96.2 0.0081 2.8E-07 61.7 7.3 81 162-242 73-166 (366)
196 2qor_A Guanylate kinase; phosp 96.1 0.0028 9.6E-08 59.0 3.5 27 162-188 11-37 (204)
197 1v5w_A DMC1, meiotic recombina 96.1 0.0086 2.9E-07 60.8 7.3 37 162-198 121-166 (343)
198 1kgd_A CASK, peripheral plasma 96.1 0.0036 1.2E-07 57.2 3.8 27 162-188 4-30 (180)
199 2qt1_A Nicotinamide riboside k 96.0 0.0022 7.6E-08 59.7 2.2 34 162-195 20-54 (207)
200 3exa_A TRNA delta(2)-isopenten 96.0 0.0031 1E-07 63.5 3.3 34 164-197 4-37 (322)
201 2fz4_A DNA repair protein RAD2 96.0 0.013 4.5E-07 56.1 7.7 35 163-197 108-142 (237)
202 3d3q_A TRNA delta(2)-isopenten 96.0 0.0034 1.2E-07 63.8 3.6 33 164-196 8-40 (340)
203 3jvv_A Twitching mobility prot 96.0 0.0084 2.9E-07 61.4 6.4 27 161-187 121-147 (356)
204 1pzn_A RAD51, DNA repair and r 95.9 0.013 4.4E-07 59.7 7.5 37 162-198 130-175 (349)
205 1vma_A Cell division protein F 95.9 0.013 4.6E-07 58.6 7.5 36 162-197 103-141 (306)
206 1m7g_A Adenylylsulfate kinase; 95.9 0.0054 1.8E-07 57.4 4.3 38 162-199 24-65 (211)
207 1ltq_A Polynucleotide kinase; 95.9 0.0027 9.3E-08 62.6 2.3 32 164-195 3-35 (301)
208 3eph_A TRNA isopentenyltransfe 95.8 0.0049 1.7E-07 64.1 3.9 33 164-196 3-35 (409)
209 3asz_A Uridine kinase; cytidin 95.8 0.0041 1.4E-07 57.8 3.1 27 162-188 5-31 (211)
210 3fdi_A Uncharacterized protein 95.8 0.0068 2.3E-07 56.8 4.5 30 164-193 7-36 (201)
211 2j41_A Guanylate kinase; GMP, 95.8 0.0042 1.4E-07 57.3 3.1 26 162-187 5-30 (207)
212 2f6r_A COA synthase, bifunctio 95.8 0.0045 1.5E-07 61.1 3.4 32 163-195 75-106 (281)
213 3e70_C DPA, signal recognition 95.8 0.04 1.4E-06 55.7 10.5 26 162-187 128-153 (328)
214 3tau_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 58.1 3.1 27 162-188 7-33 (208)
215 1w4r_A Thymidine kinase; type 95.8 0.017 5.8E-07 54.0 7.1 35 163-197 20-57 (195)
216 3tr0_A Guanylate kinase, GMP k 95.8 0.0056 1.9E-07 56.4 3.7 33 163-197 7-39 (205)
217 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0084 2.9E-07 60.7 5.2 73 162-239 170-251 (330)
218 2ga8_A Hypothetical 39.9 kDa p 95.7 0.0022 7.4E-08 65.6 0.5 30 164-193 25-54 (359)
219 2qmh_A HPR kinase/phosphorylas 95.7 0.0036 1.2E-07 58.9 2.0 38 161-199 32-69 (205)
220 1lvg_A Guanylate kinase, GMP k 95.6 0.0068 2.3E-07 56.4 3.5 26 163-188 4-29 (198)
221 3a00_A Guanylate kinase, GMP k 95.6 0.0067 2.3E-07 55.6 3.4 24 164-187 2-25 (186)
222 2dr3_A UPF0273 protein PH0284; 95.5 0.011 3.7E-07 55.9 4.9 36 162-197 22-60 (247)
223 2cvh_A DNA repair and recombin 95.5 0.013 4.4E-07 54.4 5.3 37 162-198 19-55 (220)
224 1rz3_A Hypothetical protein rb 95.5 0.014 4.7E-07 54.2 5.4 37 162-198 21-60 (201)
225 2bdt_A BH3686; alpha-beta prot 95.5 0.0067 2.3E-07 55.4 3.2 34 165-199 4-37 (189)
226 3c8u_A Fructokinase; YP_612366 95.5 0.0067 2.3E-07 56.6 3.2 27 162-188 21-47 (208)
227 1ex7_A Guanylate kinase; subst 95.5 0.01 3.6E-07 55.0 4.4 25 164-188 2-26 (186)
228 1svm_A Large T antigen; AAA+ f 95.4 0.0089 3E-07 61.7 4.0 31 162-192 168-198 (377)
229 3zvl_A Bifunctional polynucleo 95.4 0.0045 1.5E-07 64.7 1.7 36 162-199 257-292 (416)
230 1x6v_B Bifunctional 3'-phospho 95.3 0.012 4.1E-07 64.6 4.9 38 162-199 51-91 (630)
231 2i1q_A DNA repair and recombin 95.3 0.023 7.9E-07 56.7 6.6 25 162-186 97-121 (322)
232 3cmw_A Protein RECA, recombina 95.3 0.021 7.1E-07 69.1 7.2 80 162-241 731-823 (1706)
233 3ney_A 55 kDa erythrocyte memb 95.2 0.011 3.8E-07 55.4 3.7 27 162-188 18-44 (197)
234 2zts_A Putative uncharacterize 95.2 0.023 7.8E-07 53.7 5.8 36 162-197 29-68 (251)
235 1znw_A Guanylate kinase, GMP k 95.1 0.013 4.4E-07 54.7 3.8 27 162-188 19-45 (207)
236 2j37_W Signal recognition part 95.1 0.12 4.1E-06 55.2 11.6 36 162-197 100-138 (504)
237 1z6g_A Guanylate kinase; struc 95.0 0.013 4.4E-07 55.4 3.6 26 162-187 22-47 (218)
238 3cmu_A Protein RECA, recombina 95.0 0.028 9.5E-07 68.9 7.2 79 161-242 1079-1173(2050)
239 2v3c_C SRP54, signal recogniti 95.0 0.026 8.8E-07 59.3 6.0 38 162-199 98-138 (432)
240 1gtv_A TMK, thymidylate kinase 94.9 0.0077 2.6E-07 55.9 1.7 24 165-188 2-25 (214)
241 2yhs_A FTSY, cell division pro 94.8 0.055 1.9E-06 57.6 8.1 26 162-187 292-317 (503)
242 1htw_A HI0065; nucleotide-bind 94.8 0.017 6E-07 51.9 3.7 26 162-187 32-57 (158)
243 1sky_E F1-ATPase, F1-ATP synth 94.8 0.022 7.5E-07 60.3 4.9 26 162-187 150-175 (473)
244 3hdt_A Putative kinase; struct 94.8 0.019 6.5E-07 54.8 4.1 31 163-193 14-44 (223)
245 3gmt_A Adenylate kinase; ssgci 94.8 0.022 7.4E-07 54.7 4.5 31 164-194 9-39 (230)
246 2eyu_A Twitching motility prot 94.8 0.017 5.8E-07 56.4 3.7 26 162-187 24-49 (261)
247 1s96_A Guanylate kinase, GMP k 94.8 0.018 6E-07 54.7 3.7 27 162-188 15-41 (219)
248 1a7j_A Phosphoribulokinase; tr 94.7 0.013 4.4E-07 58.1 2.7 37 164-200 6-45 (290)
249 2j9r_A Thymidine kinase; TK1, 94.6 0.073 2.5E-06 50.4 7.5 32 164-195 29-63 (214)
250 2jeo_A Uridine-cytidine kinase 94.6 0.021 7.3E-07 54.6 3.9 29 162-190 24-52 (245)
251 4eaq_A DTMP kinase, thymidylat 94.5 0.022 7.4E-07 54.4 3.8 27 162-188 25-51 (229)
252 2px0_A Flagellar biosynthesis 94.5 0.038 1.3E-06 54.9 5.6 37 162-198 104-144 (296)
253 3lnc_A Guanylate kinase, GMP k 94.5 0.014 4.8E-07 55.2 2.3 26 162-187 26-52 (231)
254 4gp7_A Metallophosphoesterase; 94.4 0.024 8.3E-07 51.2 3.7 22 162-183 8-29 (171)
255 2q6t_A DNAB replication FORK h 94.4 0.079 2.7E-06 55.5 8.2 36 162-197 199-238 (444)
256 1tf7_A KAIC; homohexamer, hexa 94.4 0.071 2.4E-06 57.1 7.9 37 162-198 38-78 (525)
257 2v9p_A Replication protein E1; 94.4 0.025 8.5E-07 56.6 3.9 26 162-187 125-150 (305)
258 1m8p_A Sulfate adenylyltransfe 94.3 0.027 9.2E-07 61.3 4.4 37 163-199 396-436 (573)
259 2i3b_A HCR-ntpase, human cance 94.3 0.025 8.6E-07 52.4 3.6 23 165-187 3-25 (189)
260 2axn_A 6-phosphofructo-2-kinas 94.3 0.028 9.5E-07 60.4 4.4 38 162-199 34-74 (520)
261 1rj9_A FTSY, signal recognitio 94.2 0.028 9.4E-07 56.2 3.9 26 162-187 101-126 (304)
262 2xxa_A Signal recognition part 94.2 0.13 4.4E-06 53.9 9.0 38 162-199 99-140 (433)
263 1cr0_A DNA primase/helicase; R 94.1 0.05 1.7E-06 53.4 5.6 35 162-196 34-72 (296)
264 3kta_A Chromosome segregation 94.1 0.033 1.1E-06 50.3 3.8 27 162-188 25-51 (182)
265 1odf_A YGR205W, hypothetical 3 94.1 0.03 1E-06 55.6 3.7 27 162-188 30-56 (290)
266 1j8m_F SRP54, signal recogniti 94.0 0.12 4E-06 51.4 8.0 35 163-197 98-135 (297)
267 3aez_A Pantothenate kinase; tr 94.0 0.03 1E-06 56.1 3.7 26 162-187 89-114 (312)
268 1c9k_A COBU, adenosylcobinamid 94.0 0.03 1E-06 51.7 3.3 32 166-198 2-33 (180)
269 2ewv_A Twitching motility prot 93.9 0.032 1.1E-06 57.3 3.7 26 162-187 135-160 (372)
270 1g8f_A Sulfate adenylyltransfe 93.9 0.039 1.3E-06 59.1 4.4 28 162-189 394-421 (511)
271 1sq5_A Pantothenate kinase; P- 93.9 0.031 1.1E-06 55.7 3.5 27 162-188 79-105 (308)
272 3b9q_A Chloroplast SRP recepto 93.9 0.034 1.1E-06 55.5 3.7 26 162-187 99-124 (302)
273 1xjc_A MOBB protein homolog; s 93.8 0.069 2.3E-06 48.7 5.4 32 164-195 5-39 (169)
274 3tqc_A Pantothenate kinase; bi 93.8 0.059 2E-06 54.3 5.4 27 162-188 91-117 (321)
275 1bif_A 6-phosphofructo-2-kinas 93.8 0.021 7.2E-07 60.4 2.1 34 162-195 38-74 (469)
276 3cr8_A Sulfate adenylyltranfer 93.8 0.028 9.7E-07 60.8 3.1 38 162-199 368-409 (552)
277 1zu4_A FTSY; GTPase, signal re 93.7 0.063 2.1E-06 54.0 5.4 37 162-198 104-143 (320)
278 1nlf_A Regulatory protein REPA 93.7 0.04 1.4E-06 53.7 3.8 26 162-187 29-54 (279)
279 2f1r_A Molybdopterin-guanine d 93.6 0.028 9.7E-07 51.2 2.4 24 164-187 3-26 (171)
280 4edh_A DTMP kinase, thymidylat 93.5 0.071 2.4E-06 50.3 5.2 31 163-193 6-39 (213)
281 2iut_A DNA translocase FTSK; n 93.4 0.66 2.2E-05 50.2 13.1 36 163-198 214-256 (574)
282 3tif_A Uncharacterized ABC tra 93.4 0.036 1.2E-06 53.1 2.9 26 162-187 30-55 (235)
283 3ice_A Transcription terminati 93.4 0.15 5.3E-06 52.6 7.7 26 162-187 173-198 (422)
284 3tqf_A HPR(Ser) kinase; transf 93.4 0.042 1.4E-06 50.5 3.1 31 161-192 14-44 (181)
285 2pcj_A ABC transporter, lipopr 93.3 0.037 1.3E-06 52.6 2.9 26 162-187 29-54 (224)
286 4i1u_A Dephospho-COA kinase; s 93.3 0.042 1.4E-06 52.0 3.1 32 164-196 10-41 (210)
287 2og2_A Putative signal recogni 93.3 0.047 1.6E-06 55.8 3.7 26 162-187 156-181 (359)
288 2ocp_A DGK, deoxyguanosine kin 93.2 0.048 1.6E-06 51.9 3.5 25 164-188 3-27 (241)
289 4ag6_A VIRB4 ATPase, type IV s 93.2 0.084 2.9E-06 54.1 5.6 36 162-197 34-72 (392)
290 2gza_A Type IV secretion syste 93.2 0.033 1.1E-06 56.9 2.4 27 162-188 174-200 (361)
291 1p9r_A General secretion pathw 93.1 0.057 2E-06 56.3 4.1 27 162-188 166-192 (418)
292 2cbz_A Multidrug resistance-as 93.1 0.044 1.5E-06 52.6 2.9 26 162-187 30-55 (237)
293 1p5z_B DCK, deoxycytidine kina 93.1 0.021 7.3E-07 55.2 0.7 26 162-187 23-48 (263)
294 1np6_A Molybdopterin-guanine d 93.0 0.055 1.9E-06 49.5 3.4 24 164-187 7-30 (174)
295 3sop_A Neuronal-specific septi 93.0 0.053 1.8E-06 53.1 3.5 23 165-187 4-26 (270)
296 1lw7_A Transcriptional regulat 93.0 0.055 1.9E-06 55.1 3.7 27 163-189 170-196 (365)
297 3b85_A Phosphate starvation-in 92.9 0.04 1.4E-06 51.8 2.4 25 162-186 21-45 (208)
298 4a1f_A DNAB helicase, replicat 92.9 0.078 2.7E-06 53.8 4.6 36 162-197 45-83 (338)
299 3io5_A Recombination and repai 92.9 0.093 3.2E-06 52.8 5.1 37 162-198 27-68 (333)
300 2oap_1 GSPE-2, type II secreti 92.9 0.057 1.9E-06 57.9 3.8 35 162-196 259-295 (511)
301 1b0u_A Histidine permease; ABC 92.8 0.05 1.7E-06 53.0 2.9 26 162-187 31-56 (262)
302 2d2e_A SUFC protein; ABC-ATPas 92.8 0.06 2.1E-06 52.0 3.5 25 162-186 28-52 (250)
303 4b3f_X DNA-binding protein smu 92.8 0.098 3.3E-06 57.5 5.5 35 163-197 205-242 (646)
304 2onk_A Molybdate/tungstate ABC 92.7 0.06 2.1E-06 51.8 3.4 24 164-187 25-48 (240)
305 1g6h_A High-affinity branched- 92.7 0.054 1.8E-06 52.6 2.9 26 162-187 32-57 (257)
306 3tmk_A Thymidylate kinase; pho 92.7 0.11 3.8E-06 49.2 5.1 28 163-190 5-32 (216)
307 3fvq_A Fe(3+) IONS import ATP- 92.7 0.061 2.1E-06 55.0 3.4 26 162-187 29-54 (359)
308 1sgw_A Putative ABC transporte 92.6 0.053 1.8E-06 51.3 2.8 26 162-187 34-59 (214)
309 1mv5_A LMRA, multidrug resista 92.6 0.052 1.8E-06 52.2 2.8 26 162-187 27-52 (243)
310 2dyk_A GTP-binding protein; GT 92.6 0.066 2.3E-06 46.4 3.2 23 164-186 2-24 (161)
311 2ff7_A Alpha-hemolysin translo 92.6 0.055 1.9E-06 52.2 2.9 26 162-187 34-59 (247)
312 3bh0_A DNAB-like replicative h 92.6 0.11 3.8E-06 51.8 5.3 36 162-197 67-105 (315)
313 1ji0_A ABC transporter; ATP bi 92.6 0.056 1.9E-06 51.9 2.9 26 162-187 31-56 (240)
314 2pze_A Cystic fibrosis transme 92.6 0.057 1.9E-06 51.4 2.9 26 162-187 33-58 (229)
315 2wjg_A FEOB, ferrous iron tran 92.6 0.073 2.5E-06 47.7 3.6 24 162-185 6-29 (188)
316 2zu0_C Probable ATP-dependent 92.6 0.067 2.3E-06 52.3 3.5 26 162-187 45-70 (267)
317 3gfo_A Cobalt import ATP-bindi 92.5 0.058 2E-06 53.0 2.9 26 162-187 33-58 (275)
318 2f9l_A RAB11B, member RAS onco 92.5 0.07 2.4E-06 48.8 3.3 24 164-187 6-29 (199)
319 1nrj_B SR-beta, signal recogni 92.5 0.077 2.6E-06 49.0 3.6 26 162-187 11-36 (218)
320 4g1u_C Hemin import ATP-bindin 92.5 0.058 2E-06 52.7 2.9 26 162-187 36-61 (266)
321 2ghi_A Transport protein; mult 92.4 0.06 2E-06 52.4 2.9 26 162-187 45-70 (260)
322 2olj_A Amino acid ABC transpor 92.4 0.06 2.1E-06 52.6 2.9 26 162-187 49-74 (263)
323 1oix_A RAS-related protein RAB 92.4 0.071 2.4E-06 48.6 3.3 24 164-187 30-53 (191)
324 2ixe_A Antigen peptide transpo 92.4 0.061 2.1E-06 52.7 2.9 26 162-187 44-69 (271)
325 1ls1_A Signal recognition part 92.4 0.13 4.5E-06 50.9 5.4 36 162-197 97-135 (295)
326 2qi9_C Vitamin B12 import ATP- 92.4 0.062 2.1E-06 52.0 2.9 26 162-187 25-50 (249)
327 3bgw_A DNAB-like replicative h 92.4 0.091 3.1E-06 55.2 4.4 36 162-197 196-234 (444)
328 1z47_A CYSA, putative ABC-tran 92.4 0.071 2.4E-06 54.4 3.5 26 162-187 40-65 (355)
329 4f4c_A Multidrug resistance pr 92.2 0.48 1.6E-05 56.5 10.9 27 162-188 443-469 (1321)
330 2gks_A Bifunctional SAT/APS ki 92.2 0.11 3.8E-06 56.1 5.0 37 163-199 372-411 (546)
331 1vpl_A ABC transporter, ATP-bi 92.2 0.066 2.2E-06 52.0 2.9 26 162-187 40-65 (256)
332 1z2a_A RAS-related protein RAB 92.2 0.082 2.8E-06 46.1 3.3 23 164-186 6-28 (168)
333 2yyz_A Sugar ABC transporter, 92.2 0.075 2.6E-06 54.3 3.5 26 162-187 28-53 (359)
334 2it1_A 362AA long hypothetical 92.2 0.075 2.6E-06 54.4 3.5 26 162-187 28-53 (362)
335 2ihy_A ABC transporter, ATP-bi 92.2 0.066 2.3E-06 52.7 2.9 26 162-187 46-71 (279)
336 3d31_A Sulfate/molybdate ABC t 92.2 0.065 2.2E-06 54.5 3.0 26 162-187 25-50 (348)
337 2ce2_X GTPase HRAS; signaling 92.2 0.083 2.8E-06 45.6 3.3 23 164-186 4-26 (166)
338 3rlf_A Maltose/maltodextrin im 92.2 0.076 2.6E-06 54.7 3.5 26 162-187 28-53 (381)
339 3v9p_A DTMP kinase, thymidylat 92.1 0.069 2.4E-06 51.0 2.9 25 163-187 25-49 (227)
340 2yz2_A Putative ABC transporte 92.1 0.069 2.3E-06 52.1 2.9 26 162-187 32-57 (266)
341 1v43_A Sugar-binding transport 92.1 0.078 2.7E-06 54.5 3.5 26 162-187 36-61 (372)
342 3lv8_A DTMP kinase, thymidylat 92.1 0.093 3.2E-06 50.4 3.8 26 162-187 26-51 (236)
343 1u8z_A RAS-related protein RAL 92.1 0.082 2.8E-06 45.9 3.2 24 163-186 4-27 (168)
344 1g29_1 MALK, maltose transport 92.1 0.079 2.7E-06 54.4 3.5 26 162-187 28-53 (372)
345 1ek0_A Protein (GTP-binding pr 92.0 0.077 2.6E-06 46.2 2.9 23 164-186 4-26 (170)
346 2nq2_C Hypothetical ABC transp 92.0 0.071 2.4E-06 51.6 2.9 26 162-187 30-55 (253)
347 2ged_A SR-beta, signal recogni 92.0 0.099 3.4E-06 47.1 3.6 26 162-187 47-72 (193)
348 1kao_A RAP2A; GTP-binding prot 92.0 0.092 3.1E-06 45.5 3.3 23 164-186 4-26 (167)
349 2r6a_A DNAB helicase, replicat 91.8 0.17 5.7E-06 53.2 5.6 36 162-197 202-241 (454)
350 3ld9_A DTMP kinase, thymidylat 91.7 0.11 3.7E-06 49.5 3.7 27 162-188 20-46 (223)
351 2wji_A Ferrous iron transport 91.7 0.096 3.3E-06 46.3 3.2 22 164-185 4-25 (165)
352 1z0j_A RAB-22, RAS-related pro 91.7 0.1 3.5E-06 45.5 3.3 24 164-187 7-30 (170)
353 1q57_A DNA primase/helicase; d 91.7 0.12 4.2E-06 54.8 4.5 36 162-197 241-280 (503)
354 3p32_A Probable GTPase RV1496/ 91.7 0.16 5.5E-06 51.5 5.2 35 163-197 79-116 (355)
355 2ffh_A Protein (FFH); SRP54, s 91.6 0.16 5.6E-06 53.0 5.3 36 162-197 97-135 (425)
356 2zej_A Dardarin, leucine-rich 91.6 0.081 2.8E-06 47.6 2.6 21 165-185 4-24 (184)
357 2nzj_A GTP-binding protein REM 91.6 0.1 3.4E-06 45.9 3.2 22 164-185 5-26 (175)
358 1g16_A RAS-related protein SEC 91.6 0.11 3.6E-06 45.4 3.3 22 164-185 4-25 (170)
359 3gd7_A Fusion complex of cysti 91.5 0.098 3.4E-06 54.1 3.4 26 162-187 46-71 (390)
360 1wms_A RAB-9, RAB9, RAS-relate 91.5 0.11 3.8E-06 45.8 3.3 24 163-186 7-30 (177)
361 1oxx_K GLCV, glucose, ABC tran 91.5 0.07 2.4E-06 54.4 2.3 26 162-187 30-55 (353)
362 1ky3_A GTP-binding protein YPT 91.4 0.11 3.8E-06 45.8 3.3 25 162-186 7-31 (182)
363 1z08_A RAS-related protein RAB 91.4 0.11 3.9E-06 45.3 3.3 23 164-186 7-29 (170)
364 2lkc_A Translation initiation 91.3 0.13 4.5E-06 45.4 3.7 24 162-185 7-30 (178)
365 2pjz_A Hypothetical protein ST 91.3 0.093 3.2E-06 51.2 2.9 25 163-187 30-54 (263)
366 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.095 3.3E-06 55.4 3.2 26 162-187 137-162 (460)
367 1r8s_A ADP-ribosylation factor 91.3 0.12 4.1E-06 45.0 3.3 23 165-187 2-24 (164)
368 3nh6_A ATP-binding cassette SU 91.3 0.06 2E-06 53.8 1.5 26 162-187 79-104 (306)
369 1c1y_A RAS-related protein RAP 91.3 0.11 3.8E-06 45.1 3.2 23 164-186 4-26 (167)
370 4tmk_A Protein (thymidylate ki 91.3 0.13 4.6E-06 48.4 3.8 24 164-187 4-27 (213)
371 1r2q_A RAS-related protein RAB 91.2 0.12 4.2E-06 44.9 3.3 23 163-185 6-28 (170)
372 3q85_A GTP-binding protein REM 91.2 0.12 3.9E-06 45.3 3.2 20 165-184 4-23 (169)
373 1e9r_A Conjugal transfer prote 91.2 0.17 5.7E-06 52.6 4.8 36 162-197 52-90 (437)
374 3bc1_A RAS-related protein RAB 91.2 0.12 4.2E-06 46.0 3.3 24 163-186 11-34 (195)
375 2erx_A GTP-binding protein DI- 91.2 0.12 4E-06 45.1 3.2 22 164-185 4-25 (172)
376 3q72_A GTP-binding protein RAD 91.1 0.12 4.2E-06 45.0 3.2 21 164-184 3-23 (166)
377 1upt_A ARL1, ADP-ribosylation 91.1 0.13 4.6E-06 44.9 3.5 24 162-185 6-29 (171)
378 1w36_D RECD, exodeoxyribonucle 91.1 0.12 4.3E-06 56.4 3.9 27 161-187 162-188 (608)
379 2wsm_A Hydrogenase expression/ 91.1 0.13 4.6E-06 47.5 3.6 26 163-188 30-55 (221)
380 3llm_A ATP-dependent RNA helic 91.1 0.27 9.2E-06 46.4 5.8 22 162-183 75-96 (235)
381 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.14 4.8E-06 45.2 3.5 27 161-187 21-47 (149)
382 2bbs_A Cystic fibrosis transme 91.0 0.1 3.6E-06 51.6 2.9 26 162-187 63-88 (290)
383 1yrb_A ATP(GTP)binding protein 90.9 0.23 8E-06 47.2 5.3 36 162-197 13-50 (262)
384 2gj8_A MNME, tRNA modification 90.9 0.12 4.3E-06 46.0 3.1 24 163-186 4-27 (172)
385 2fn4_A P23, RAS-related protei 90.9 0.13 4.5E-06 45.3 3.3 24 163-186 9-32 (181)
386 2y8e_A RAB-protein 6, GH09086P 90.9 0.13 4.5E-06 45.2 3.3 24 163-186 14-37 (179)
387 2a9k_A RAS-related protein RAL 90.9 0.13 4.3E-06 45.7 3.1 25 162-186 17-41 (187)
388 1z0f_A RAB14, member RAS oncog 90.8 0.14 4.8E-06 45.1 3.3 25 163-187 15-39 (179)
389 1tf7_A KAIC; homohexamer, hexa 90.8 0.23 7.8E-06 53.1 5.6 34 162-195 280-316 (525)
390 3con_A GTPase NRAS; structural 90.8 0.14 4.8E-06 46.0 3.3 25 162-186 20-44 (190)
391 4dsu_A GTPase KRAS, isoform 2B 90.8 0.14 4.8E-06 45.6 3.3 23 164-186 5-27 (189)
392 1m7b_A RND3/RHOE small GTP-bin 90.8 0.14 4.7E-06 45.9 3.3 24 163-186 7-30 (184)
393 3hjn_A DTMP kinase, thymidylat 90.7 0.24 8.1E-06 45.9 4.9 30 166-195 3-35 (197)
394 1svi_A GTP-binding protein YSX 90.6 0.15 5.1E-06 45.9 3.4 24 162-185 22-45 (195)
395 2hxs_A RAB-26, RAS-related pro 90.6 0.14 4.8E-06 45.2 3.2 23 163-185 6-28 (178)
396 2bme_A RAB4A, RAS-related prot 90.6 0.14 5E-06 45.5 3.3 24 163-186 10-33 (186)
397 3tw8_B RAS-related protein RAB 90.6 0.13 4.5E-06 45.3 2.9 23 163-185 9-31 (181)
398 2www_A Methylmalonic aciduria 90.6 0.29 1E-05 49.5 5.9 25 163-187 74-98 (349)
399 1m2o_B GTP-binding protein SAR 90.6 0.15 5.1E-06 46.3 3.4 24 162-185 22-45 (190)
400 2oil_A CATX-8, RAS-related pro 90.6 0.15 5.1E-06 46.0 3.3 24 163-186 25-48 (193)
401 2gk6_A Regulator of nonsense t 90.5 0.14 4.9E-06 56.0 3.7 26 162-187 194-219 (624)
402 4hlc_A DTMP kinase, thymidylat 90.5 0.23 7.8E-06 46.4 4.6 28 166-193 5-34 (205)
403 2hf9_A Probable hydrogenase ni 90.5 0.16 5.6E-06 47.1 3.6 25 163-187 38-62 (226)
404 2vp4_A Deoxynucleoside kinase; 90.5 0.083 2.8E-06 50.0 1.6 25 162-186 19-43 (230)
405 3kkq_A RAS-related protein M-R 90.5 0.16 5.3E-06 45.2 3.3 25 162-186 17-41 (183)
406 2efe_B Small GTP-binding prote 90.4 0.16 5.3E-06 45.0 3.3 25 162-186 11-35 (181)
407 2g6b_A RAS-related protein RAB 90.4 0.16 5.4E-06 44.9 3.3 25 162-186 9-33 (180)
408 3e2i_A Thymidine kinase; Zn-bi 90.4 0.33 1.1E-05 46.0 5.6 33 163-195 28-63 (219)
409 2cxx_A Probable GTP-binding pr 90.4 0.15 5E-06 45.5 3.1 21 165-185 3-23 (190)
410 3clv_A RAB5 protein, putative; 90.4 0.17 5.7E-06 45.4 3.5 24 163-186 7-30 (208)
411 3pqc_A Probable GTP-binding pr 90.4 0.16 5.6E-06 45.4 3.4 25 162-186 22-46 (195)
412 3t1o_A Gliding protein MGLA; G 90.3 0.16 5.5E-06 45.4 3.3 25 163-187 14-38 (198)
413 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.16 5.6E-06 45.0 3.3 23 164-186 6-28 (186)
414 1pui_A ENGB, probable GTP-bind 90.3 0.088 3E-06 48.2 1.5 24 162-185 25-48 (210)
415 1x3s_A RAS-related protein RAB 90.2 0.14 4.8E-06 45.9 2.8 25 162-186 14-38 (195)
416 3tui_C Methionine import ATP-b 90.1 0.16 5.5E-06 52.0 3.5 26 162-187 53-78 (366)
417 2dpy_A FLII, flagellum-specifi 90.1 0.25 8.6E-06 51.7 5.0 28 162-189 156-183 (438)
418 2qm8_A GTPase/ATPase; G protei 90.0 0.18 6.1E-06 50.9 3.7 26 162-187 54-79 (337)
419 3bwd_D RAC-like GTP-binding pr 90.0 0.2 6.9E-06 44.3 3.6 25 162-186 7-31 (182)
420 2p5s_A RAS and EF-hand domain 90.0 0.18 6.1E-06 45.9 3.4 25 162-186 27-51 (199)
421 2gf9_A RAS-related protein RAB 90.0 0.18 6.1E-06 45.3 3.3 23 164-186 23-45 (189)
422 3tkl_A RAS-related protein RAB 89.9 0.18 6.2E-06 45.3 3.3 24 163-186 16-39 (196)
423 2atv_A RERG, RAS-like estrogen 89.9 0.19 6.4E-06 45.5 3.5 25 162-186 27-51 (196)
424 2bov_A RAla, RAS-related prote 89.9 0.18 6.2E-06 45.7 3.3 25 162-186 13-37 (206)
425 3thx_B DNA mismatch repair pro 89.9 0.19 6.3E-06 57.6 4.0 25 162-186 672-696 (918)
426 1moz_A ARL1, ADP-ribosylation 89.9 0.13 4.6E-06 45.6 2.4 23 162-184 17-39 (183)
427 2fg5_A RAB-22B, RAS-related pr 89.8 0.18 6.2E-06 45.5 3.3 24 163-186 23-46 (192)
428 3t5g_A GTP-binding protein RHE 89.8 0.19 6.4E-06 44.6 3.3 23 163-185 6-28 (181)
429 3c5c_A RAS-like protein 12; GD 89.8 0.19 6.4E-06 45.4 3.3 25 162-186 20-44 (187)
430 3ihw_A Centg3; RAS, centaurin, 89.8 0.19 6.4E-06 45.4 3.3 25 162-186 19-43 (184)
431 1z06_A RAS-related protein RAB 89.7 0.19 6.6E-06 45.1 3.3 25 162-186 19-43 (189)
432 3dz8_A RAS-related protein RAB 89.7 0.19 6.4E-06 45.3 3.3 26 162-187 22-47 (191)
433 2obl_A ESCN; ATPase, hydrolase 89.7 0.29 1E-05 49.6 5.0 28 162-189 70-97 (347)
434 2a5j_A RAS-related protein RAB 89.7 0.19 6.7E-06 45.2 3.3 25 162-186 20-44 (191)
435 3k53_A Ferrous iron transport 89.7 0.18 6.1E-06 48.8 3.2 24 163-186 3-26 (271)
436 2iwr_A Centaurin gamma 1; ANK 89.6 0.15 5.1E-06 45.1 2.5 25 162-186 6-30 (178)
437 1vg8_A RAS-related protein RAB 89.6 0.2 6.7E-06 45.5 3.3 26 162-187 7-32 (207)
438 1zd9_A ADP-ribosylation factor 89.6 0.2 6.8E-06 45.1 3.3 25 162-186 21-45 (188)
439 1f6b_A SAR1; gtpases, N-termin 89.6 0.18 6.1E-06 46.1 3.0 24 162-185 24-47 (198)
440 1ksh_A ARF-like protein 2; sma 89.6 0.19 6.4E-06 44.9 3.1 24 162-185 17-40 (186)
441 1ewq_A DNA mismatch repair pro 89.5 0.28 9.6E-06 55.0 5.1 25 163-187 576-600 (765)
442 2bcg_Y Protein YP2, GTP-bindin 89.5 0.2 6.8E-06 45.7 3.3 23 164-186 9-31 (206)
443 3reg_A RHO-like small GTPase; 89.5 0.21 7.1E-06 45.1 3.3 26 162-187 22-47 (194)
444 1fzq_A ADP-ribosylation factor 89.4 0.19 6.6E-06 45.0 3.1 25 162-186 15-39 (181)
445 2gf0_A GTP-binding protein DI- 89.4 0.21 7.3E-06 44.9 3.4 24 162-185 7-30 (199)
446 1zbd_A Rabphilin-3A; G protein 89.4 0.2 6.8E-06 45.5 3.2 23 164-186 9-31 (203)
447 3oes_A GTPase rhebl1; small GT 89.4 0.21 7.1E-06 45.5 3.3 26 162-187 23-48 (201)
448 1wb9_A DNA mismatch repair pro 89.3 0.26 9E-06 55.6 4.7 26 162-187 606-631 (800)
449 1gwn_A RHO-related GTP-binding 89.2 0.21 7.3E-06 46.0 3.3 24 163-186 28-51 (205)
450 4bas_A ADP-ribosylation factor 89.2 0.18 6.2E-06 45.4 2.7 24 162-185 16-39 (199)
451 2ew1_A RAS-related protein RAB 89.2 0.22 7.4E-06 45.9 3.3 23 164-186 27-49 (201)
452 3lxx_A GTPase IMAP family memb 89.1 0.19 6.5E-06 47.5 2.9 25 162-186 28-52 (239)
453 2fh5_B SR-beta, signal recogni 89.1 0.23 7.8E-06 45.6 3.4 26 162-187 6-31 (214)
454 3ch4_B Pmkase, phosphomevalona 89.1 0.37 1.3E-05 45.2 4.7 38 162-199 10-48 (202)
455 3qks_A DNA double-strand break 89.0 0.24 8.4E-06 46.0 3.5 28 161-188 21-48 (203)
456 2qnr_A Septin-2, protein NEDD5 89.0 0.19 6.5E-06 49.8 2.9 23 164-186 19-41 (301)
457 1zj6_A ADP-ribosylation factor 88.9 0.23 8E-06 44.5 3.2 24 162-185 15-38 (187)
458 2yv5_A YJEQ protein; hydrolase 88.9 0.23 8E-06 49.2 3.5 25 162-187 164-188 (302)
459 3cph_A RAS-related protein SEC 88.9 0.24 8.1E-06 45.2 3.3 24 162-185 19-42 (213)
460 2atx_A Small GTP binding prote 88.8 0.24 8.2E-06 44.6 3.3 24 163-186 18-41 (194)
461 2rcn_A Probable GTPase ENGC; Y 88.8 0.23 8E-06 50.6 3.5 26 162-187 214-239 (358)
462 3vkw_A Replicase large subunit 88.7 0.46 1.6E-05 49.8 5.8 24 162-185 160-183 (446)
463 3cbq_A GTP-binding protein REM 88.7 0.17 6E-06 46.1 2.2 22 163-184 23-44 (195)
464 2b6h_A ADP-ribosylation factor 88.7 0.24 8.3E-06 44.9 3.2 23 162-184 28-50 (192)
465 1ko7_A HPR kinase/phosphatase; 88.6 0.23 7.7E-06 49.8 3.1 30 162-192 143-172 (314)
466 2wjy_A Regulator of nonsense t 88.6 0.24 8.4E-06 55.9 3.8 26 162-187 370-395 (800)
467 2h17_A ADP-ribosylation factor 88.6 0.23 7.9E-06 44.3 2.9 24 162-185 20-43 (181)
468 2fv8_A H6, RHO-related GTP-bin 88.6 0.25 8.6E-06 45.2 3.3 24 162-185 24-47 (207)
469 2o52_A RAS-related protein RAB 88.5 0.24 8.2E-06 45.2 3.1 23 163-185 25-47 (200)
470 2il1_A RAB12; G-protein, GDP, 88.5 0.24 8.1E-06 44.8 3.0 23 163-185 26-48 (192)
471 2fu5_C RAS-related protein RAB 88.5 0.15 5.3E-06 45.3 1.7 22 164-185 9-30 (183)
472 1knx_A Probable HPR(Ser) kinas 88.4 0.2 6.8E-06 50.2 2.6 38 161-199 145-182 (312)
473 2q3h_A RAS homolog gene family 88.4 0.25 8.7E-06 44.7 3.2 24 162-185 19-42 (201)
474 3qf7_A RAD50; ABC-ATPase, ATPa 88.4 0.26 9E-06 50.2 3.5 26 162-187 22-47 (365)
475 3thx_A DNA mismatch repair pro 88.4 0.33 1.1E-05 55.7 4.6 24 163-186 662-685 (934)
476 2gco_A H9, RHO-related GTP-bin 88.4 0.27 9.1E-06 44.8 3.3 24 163-186 25-48 (201)
477 2p67_A LAO/AO transport system 88.3 0.42 1.4E-05 48.1 5.0 34 162-195 55-91 (341)
478 1z6t_A APAF-1, apoptotic prote 88.2 0.24 8.2E-06 53.3 3.3 24 162-185 146-169 (591)
479 1u0l_A Probable GTPase ENGC; p 88.2 0.21 7.3E-06 49.4 2.6 26 162-187 168-193 (301)
480 2hup_A RAS-related protein RAB 88.2 0.28 9.5E-06 44.8 3.3 23 163-185 29-51 (201)
481 2qag_B Septin-6, protein NEDD5 88.1 0.2 6.8E-06 52.4 2.5 21 166-186 45-65 (427)
482 3b6e_A Interferon-induced heli 88.1 0.37 1.3E-05 43.9 4.1 25 163-187 48-72 (216)
483 2f7s_A C25KG, RAS-related prot 88.0 0.27 9.3E-06 45.1 3.1 22 164-185 26-47 (217)
484 1qhl_A Protein (cell division 88.0 0.12 4.1E-06 49.3 0.6 24 164-187 28-51 (227)
485 2cjw_A GTP-binding protein GEM 88.0 0.3 1E-05 44.4 3.3 23 164-186 7-29 (192)
486 2j0v_A RAC-like GTP-binding pr 88.0 0.29 9.9E-06 44.8 3.3 24 163-186 9-32 (212)
487 2j1l_A RHO-related GTP-binding 87.9 0.28 9.4E-06 45.3 3.1 24 162-185 33-56 (214)
488 2h57_A ADP-ribosylation factor 87.7 0.23 7.9E-06 44.6 2.4 25 162-186 20-44 (190)
489 3euj_A Chromosome partition pr 87.7 0.29 9.8E-06 52.0 3.4 24 164-187 30-53 (483)
490 2x77_A ADP-ribosylation factor 87.7 0.23 7.9E-06 44.5 2.4 23 162-184 21-43 (189)
491 1dek_A Deoxynucleoside monopho 87.6 0.28 9.6E-06 47.2 3.0 27 165-191 3-29 (241)
492 4gzl_A RAS-related C3 botulinu 87.5 0.32 1.1E-05 44.5 3.3 25 162-186 29-53 (204)
493 3cpj_B GTP-binding protein YPT 87.5 0.33 1.1E-05 45.1 3.3 23 164-186 14-36 (223)
494 1xx6_A Thymidine kinase; NESG, 87.4 0.57 1.9E-05 43.3 4.9 32 164-195 9-43 (191)
495 3b5x_A Lipid A export ATP-bind 87.4 0.25 8.5E-06 53.6 2.8 26 162-187 368-393 (582)
496 1tq4_A IIGP1, interferon-induc 87.3 0.62 2.1E-05 48.4 5.6 26 162-187 68-93 (413)
497 2qu8_A Putative nucleolar GTP- 87.2 0.31 1.1E-05 45.4 3.1 24 162-185 28-51 (228)
498 3kjh_A CO dehydrogenase/acetyl 87.2 0.51 1.7E-05 44.2 4.5 33 166-198 3-38 (254)
499 2xzl_A ATP-dependent helicase 87.2 0.35 1.2E-05 54.6 3.9 24 162-185 374-397 (802)
500 1yqt_A RNAse L inhibitor; ATP- 87.1 0.32 1.1E-05 52.3 3.5 26 162-187 46-71 (538)
No 1
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=100.00 E-value=1.5e-43 Score=367.18 Aligned_cols=346 Identities=55% Similarity=0.921 Sum_probs=276.1
Q ss_pred CCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCC
Q 038067 71 DLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGN 150 (510)
Q Consensus 71 ~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 150 (510)
.+++|+++.+.|++.|+||+.+++. +..++.+|+++......
T Consensus 2 ~~~~~~~l~~~l~~~i~G~~~~~~~---------------l~~~i~~~~~~~~~~~~----------------------- 43 (363)
T 3hws_A 2 ALPTPHEIRNHLDDYVIGQEQAKKV---------------LAVAVYNHYKRLRNGDT----------------------- 43 (363)
T ss_dssp CCCCHHHHHHHHHHHCCSCHHHHHH---------------HHHHHHHHHHHHHTTSC-----------------------
T ss_pred CCCCHHHHHHHHHhhccCHHHHHHH---------------HHHHHHHHHhhhccccc-----------------------
Confidence 4688999999999999999999999 99999989887654211
Q ss_pred CCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 151 CNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 151 ~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
......++.++||+||||||||++|+++|+.++.||+.++++++...+|+|++..+.++.++..+.+.+..+.++
T Consensus 44 -----~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 118 (363)
T 3hws_A 44 -----SNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRG 118 (363)
T ss_dssp -----SSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHC
T ss_pred -----cccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCc
Confidence 011223668999999999999999999999999999999999998888999887888889988888777888899
Q ss_pred EEEEcchhhhhhhcc-CCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 231 IVYIDEVDKIVKAES-RNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 231 Vl~iDEidkl~~~~~-~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
||||||||++...+. .+.+++.+++.+|+.||++|||..+.++ +.+++.....+.++|.|+|++||++|++.+++++
T Consensus 119 vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~--~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~ 196 (363)
T 3hws_A 119 IVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVP--PQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKV 196 (363)
T ss_dssp EEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------------------CCCCCTTSSEEEEEECCTTHHHH
T ss_pred EEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeecc--CccccccCCCceEEEECCCceEEecCCcHHHHHH
Confidence 999999999986532 2334555666799999999998777766 7777777777888999999999999999999999
Q ss_pred HHhhccc-CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhH
Q 038067 310 ISERRQD-SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKN 388 (510)
Q Consensus 310 i~~~~~~-~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~ 388 (510)
+.++..+ ..+||........ .......+.+.+.+.++.+.+|+|+|++||+.++.|.|++.+++.+|+..+++
T Consensus 197 i~~~~~~~~~~gf~~~~~~~~------~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~ 270 (363)
T 3hws_A 197 ISHRVETGSGIGFGATVKAKS------DKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKN 270 (363)
T ss_dssp HHHHHCCCC------------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTT
T ss_pred HHHhhhccccCCccccccccc------cchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHH
Confidence 9998876 7899977643321 11234577888999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccCcC
Q 038067 389 ALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVD 468 (510)
Q Consensus 389 ~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~~~ 468 (510)
.+.++|.+.+...+..+.++++++++|++.+|.+++|+|+|+++|++.+.++++++|+.. .++.+.||++.+....
T Consensus 271 ~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 271 ALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME----DVEKVVIDESVIDGQS 346 (363)
T ss_dssp CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC----CSEEEECHHHHTTCCS
T ss_pred HHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccccc----CCceeEEcHHHHhCcC
Confidence 899999988888899999999999999999999999999999999999999999999774 4678999999998766
Q ss_pred CCC
Q 038067 469 APG 471 (510)
Q Consensus 469 ~~~ 471 (510)
.+-
T Consensus 347 ~~~ 349 (363)
T 3hws_A 347 EPL 349 (363)
T ss_dssp CCE
T ss_pred Cce
Confidence 543
No 2
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=100.00 E-value=3.4e-39 Score=335.75 Aligned_cols=352 Identities=49% Similarity=0.821 Sum_probs=264.5
Q ss_pred CCCCChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhh-------hhhhhhcccccccccc
Q 038067 70 IDLPTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSS-------LQKELVSDHLYVDSIL 142 (510)
Q Consensus 70 ~~~~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~-------~~~~~~~~~~~~~~~~ 142 (510)
..+++++++.+.|+++|+||+.||++ |..++++|+++..... .... .+
T Consensus 7 ~~~~~~~~l~~~L~~~viGq~~ak~~---------------l~~~~~~~~~~~~~g~~~~~~~~~~~~--~p-------- 61 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQEQAKKV---------------FSVAVYNHYKRLSFKEKLKKQDNQDSN--VE-------- 61 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHCSHHHH--HH--------
T ss_pred cCCCCHHHHHHHHhhHccCcHHHHHH---------------HHHHHHHHHHHHHhhhhhhhccccccc--cc--------
Confidence 45789999999999999999999999 9999999998876421 0000 00
Q ss_pred cCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhch
Q 038067 143 GSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADF 222 (510)
Q Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~ 222 (510)
......+..++.++||+||||||||++|+++|+.++.|++.++++.+...+|+|.+....+..++....+
T Consensus 62 ----------~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 131 (376)
T 1um8_A 62 ----------LEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131 (376)
T ss_dssp ----------HHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTT
T ss_pred ----------cccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccc
Confidence 0000112235678999999999999999999999999999999999988889998877888888877766
Q ss_pred hHHHhcCcEEEEcchhhhhhhc-cCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCC
Q 038067 223 DVEAAQRGIVYIDEVDKIVKAE-SRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGG 301 (510)
Q Consensus 223 ~~~~~~~~Vl~iDEidkl~~~~-~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg 301 (510)
.+..+.++||||||++++...+ ......+.+++.+++.|+++||++.+.++ +.|++.....+.++++|+|++||+++
T Consensus 132 ~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~--~~~~~~~~~~~~~~i~t~n~~~I~~~ 209 (376)
T 1um8_A 132 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIP--PKGGRKHPEGNFIQIDTSDILFICAG 209 (376)
T ss_dssp CHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC-----------------CEECTTCEEEEEE
T ss_pred hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecc--cccccccCCcceEEEecCCeEEEecC
Confidence 6777889999999999998652 23345566667799999999998887776 78888877888899999999999999
Q ss_pred CccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHH
Q 038067 302 AFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQ 381 (510)
Q Consensus 302 ~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~ 381 (510)
|+.+++..+.+|.....+||..+..... ....+++.+.+.++....|.|+|++||+.++.|+||+.+++.+
T Consensus 210 ~~~~l~~~l~~R~~~~~~g~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~ 280 (376)
T 1um8_A 210 AFDGLAEIIKKRTTQNVLGFTQEKMSKK---------EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVD 280 (376)
T ss_dssp CCTTHHHHTTTSCSSCCCSCCCSSCCTT---------TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred CHHHHHHHHHHHhcccccCCCchhhhcc---------chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHH
Confidence 9999999999988888889976543211 1134556677778888889999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEcc
Q 038067 382 VLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDK 461 (510)
Q Consensus 382 Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~ 461 (510)
|+...++.+.++|...+...+..+.++++++++|++++|...+|+|.|++++++++.+++++.+.. ....+.|+.
T Consensus 281 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~-----~~~~~~i~~ 355 (376)
T 1um8_A 281 ILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL-----KGSEVRITK 355 (376)
T ss_dssp HHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG-----TTSEEEECH
T ss_pred HHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC-----CCCEEEEeH
Confidence 999877778888888877788899999999999999999888999999999999999999998865 346788999
Q ss_pred ccccCcCCCCc
Q 038067 462 EAVGSVDAPGC 472 (510)
Q Consensus 462 ~~v~~~~~~~~ 472 (510)
+.+....++..
T Consensus 356 ~~v~~~~~~~~ 366 (376)
T 1um8_A 356 DCVLKQAEPLI 366 (376)
T ss_dssp HHHTTSSCCEE
T ss_pred HHhcCCCCcee
Confidence 99987665543
No 3
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=100.00 E-value=3e-38 Score=333.89 Aligned_cols=286 Identities=39% Similarity=0.648 Sum_probs=235.0
Q ss_pred CChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCC
Q 038067 73 PTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCN 152 (510)
Q Consensus 73 ~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (510)
++|++|.+.|+++|+||++||+. +..+++++|+|......
T Consensus 4 ~tP~~i~~~Ld~~IvGqe~ak~~---------------l~~av~~~~~r~~~~~~------------------------- 43 (444)
T 1g41_A 4 MTPREIVSELDQHIIGQADAKRA---------------VAIALRNRWRRMQLQEP------------------------- 43 (444)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHH---------------HHHHHHHHHHHHHSCTT-------------------------
T ss_pred CCHHHHHHHHHHHhCCHHHHHHH---------------HHHHHHHHHhhhccccc-------------------------
Confidence 68999999999999999999999 99999999998753110
Q ss_pred CCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhc-----------
Q 038067 153 VENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAAD----------- 221 (510)
Q Consensus 153 ~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~----------- 221 (510)
-....+++++||+||||||||++|+++|+.++.+|+.++++.+...+|+|.+.+..++.++..+.
T Consensus 44 ----~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~ 119 (444)
T 1g41_A 44 ----LRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKN 119 (444)
T ss_dssp ----TTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ----cccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhh
Confidence 01123668999999999999999999999999999999999999888999876666666554320
Q ss_pred -----------------------------------------------------------------hh-------------
Q 038067 222 -----------------------------------------------------------------FD------------- 223 (510)
Q Consensus 222 -----------------------------------------------------------------~~------------- 223 (510)
+.
T Consensus 120 ~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~ 199 (444)
T 1g41_A 120 RARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQ 199 (444)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHH
Confidence 00
Q ss_pred ---------------------------------------------HHHh-cCcEEEEcchhhhhhhccCCCCCCCchhhH
Q 038067 224 ---------------------------------------------VEAA-QRGIVYIDEVDKIVKAESRNNGRDVSGEGV 257 (510)
Q Consensus 224 ---------------------------------------------~~~~-~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v 257 (510)
+..+ .++|+++|||||+..... +.++|+++++|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~~DEidki~~~~~-~~~~D~s~egv 278 (444)
T 1g41_A 200 LQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE-YSGADVSREGV 278 (444)
T ss_dssp --------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEEEETGGGGSCCSS-CSSSHHHHHHH
T ss_pred HHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeeeHHHHHHHhhccC-CCCCCchHHHH
Confidence 1123 678999999999985432 46789999999
Q ss_pred HHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchh
Q 038067 258 QQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDA 337 (510)
Q Consensus 258 ~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~ 337 (510)
|++||++||+..+.. +...++|+|++|||||+|..
T Consensus 279 q~aLL~~le~~~~~~-------------~~~~~d~~~ilfI~~gaf~~-------------------------------- 313 (444)
T 1g41_A 279 QRDLLPLVEGSTVST-------------KHGMVKTDHILFIASGAFQV-------------------------------- 313 (444)
T ss_dssp HHHHHHHHHCCEEEE-------------TTEEEECTTCEEEEEECCSS--------------------------------
T ss_pred HHHHHHHhccccccc-------------ccceecCCcEEEEecccccc--------------------------------
Confidence 999999999876652 12689999999999999751
Q ss_pred hhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHH
Q 038067 338 LVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAK 417 (510)
Q Consensus 338 ~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~ 417 (510)
..|.| ++|||++||+.+|.|++|+.+++.+|++++.+.+++||.+++...++++.|+++|+++|++
T Consensus 314 ---------~~~~d-----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~ 379 (444)
T 1g41_A 314 ---------ARPSD-----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 379 (444)
T ss_dssp ---------CCGGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred ---------CChhh-----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHH
Confidence 01222 6799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCC-----CCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccCc
Q 038067 418 KAMA-----KNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSV 467 (510)
Q Consensus 418 ~~~~-----~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~~ 467 (510)
.++. .+.|||.|+++|++++.+.++++|+.. ...+.||.+.|...
T Consensus 380 ~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~-----~~~~~i~~~~v~~~ 429 (444)
T 1g41_A 380 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN-----GQTVNIDAAYVADA 429 (444)
T ss_dssp HHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCT-----TCEEEECHHHHHHH
T ss_pred HHHHhccCCccCCchHHHHHHHHHHHHHHhhccccC-----CCeEEEeHHHHHHh
Confidence 8654 899999999999999999999999753 35788998888643
No 4
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.96 E-value=3.2e-28 Score=244.22 Aligned_cols=285 Identities=39% Similarity=0.635 Sum_probs=217.1
Q ss_pred CChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCC
Q 038067 73 PTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCN 152 (510)
Q Consensus 73 ~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (510)
.+|.++.+.|++.|+||+.+++. +..++..++++.......
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~---------------l~~~l~~~~~~~~~~~~~------------------------ 44 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRA---------------VAIALRNRWRRMQLQEPL------------------------ 44 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHH---------------HHHHHHHHHHTTSSCHHH------------------------
T ss_pred CCHHHHHHHHhhhcCChHHHHHH---------------HHHHHHHHHhhhhhcccc------------------------
Confidence 58999999999999999999999 888887665543221100
Q ss_pred CCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHH-hcCcE
Q 038067 153 VENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEA-AQRGI 231 (510)
Q Consensus 153 ~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~-~~~~V 231 (510)
.....+.++||+||||||||++|+++|+.++.+++.++++.+...+|+|.+....+..++...++.+.. ..++|
T Consensus 45 -----~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (310)
T 1ofh_A 45 -----RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGI 119 (310)
T ss_dssp -----HHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCE
T ss_pred -----cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCE
Confidence 011256789999999999999999999999999999999999877899987777788877765444444 35789
Q ss_pred EEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHH
Q 038067 232 VYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTIS 311 (510)
Q Consensus 232 l~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~ 311 (510)
|||||+|++..... +.+.+.+.+.+++.|+++||+..+... . -.+...+++||+++++..
T Consensus 120 l~iDEi~~l~~~~~-~~~~~~~~~~~~~~Ll~~le~~~~~~~---~----------~~~~~~~~~~i~~~~~~~------ 179 (310)
T 1ofh_A 120 VFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVSTK---H----------GMVKTDHILFIASGAFQV------ 179 (310)
T ss_dssp EEEECGGGGSCCSS-CCSSHHHHHHHHHHHHHHHHCCEEEET---T----------EEEECTTCEEEEEECCSS------
T ss_pred EEEEChhhcCcccc-ccccchhHHHHHHHHHHHhcCCeEecc---c----------ccccCCcEEEEEcCCccc------
Confidence 99999999975532 223444455679999999997654421 1 145778899998876310
Q ss_pred hhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHH
Q 038067 312 ERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALG 391 (510)
Q Consensus 312 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~ 391 (510)
. .+ ..+.|+|++||+.++.|++++.+++.+|++.....+.
T Consensus 180 ------------~-----------------------~~-----~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~ 219 (310)
T 1ofh_A 180 ------------A-----------------------RP-----SDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 219 (310)
T ss_dssp ------------S-----------------------CG-----GGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHH
T ss_pred ------------C-----------------------Cc-----ccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHH
Confidence 0 00 1378999999998899999999999999997666677
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCC-----CCCChhHHHHHHHHHHHHHHhcCcCCCCCCCcccEEEEccccccC
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMA-----KNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGS 466 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~-----~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~~~i~~~~v~~~~v~~ 466 (510)
+++...+...+..+.++++++++|++.+|. ..+++|.+.+++++++..+.++.....+ ..+.|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~~v~~ 294 (310)
T 1ofh_A 220 EQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNG-----QTVNIDAAYVAD 294 (310)
T ss_dssp HHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTT-----CEEEECHHHHHH
T ss_pred HHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccC-----CEEEEeeHHHHH
Confidence 777777777788899999999999998765 3678999999999999888877654322 345566665543
No 5
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=2.7e-27 Score=267.46 Aligned_cols=277 Identities=19% Similarity=0.267 Sum_probs=198.6
Q ss_pred ccccCCCCCCCCCCCCCC----ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhh
Q 038067 56 ETENGNRNRNSEGNIDLP----TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKEL 131 (510)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~----~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~ 131 (510)
...+.| +++|...... ...++.+.|.+.|+||+.+++. +..++.........
T Consensus 428 ~~~~~~--~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~---------------l~~~i~~~~~g~~~------- 483 (758)
T 1r6b_X 428 SVVARI--ARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA---------------LTEAIKMARAGLGH------- 483 (758)
T ss_dssp HHHHHH--SCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHH---------------HHHHHHHHHTTCSC-------
T ss_pred HHHHHh--cCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHH---------------HHHHHHHHhcccCC-------
Confidence 346778 8887765433 3456888899999999999998 66665321110000
Q ss_pred hcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccccc----------
Q 038067 132 VSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQ---------- 201 (510)
Q Consensus 132 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~---------- 201 (510)
...+..++||+||||||||++|+++|+.++.+++.++|+++.+
T Consensus 484 ---------------------------~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 484 ---------------------------EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp ---------------------------TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred ---------------------------CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCC
Confidence 0114568999999999999999999999999999999998864
Q ss_pred -ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCC
Q 038067 202 -AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPR 280 (510)
Q Consensus 202 -~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~ 280 (510)
+||+|++..+.+...++ .++++|||||||+++.+. +++.|+++||.+.++. .+
T Consensus 537 ~~g~~g~~~~~~l~~~~~-------~~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~----~~-- 590 (758)
T 1r6b_X 537 PPGYVGFDQGGLLTDAVI-------KHPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTD----NN-- 590 (758)
T ss_dssp CSCSHHHHHTTHHHHHHH-------HCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEE----TT--
T ss_pred CCCCcCccccchHHHHHH-------hCCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEc----CC--
Confidence 35777665555555443 346799999999998654 8999999999666552 11
Q ss_pred CCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchh
Q 038067 281 KHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPE 360 (510)
Q Consensus 281 ~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pe 360 (510)
...++..|++||+|+|... +. +.+..+||...... .. ..+.++..|+|+
T Consensus 591 ------g~~~~~~~~~iI~tsN~~~-~~-----~~~~~~g~~~~~~~-------------~~------~~~~~~~~~~~~ 639 (758)
T 1r6b_X 591 ------GRKADFRNVVLVMTTNAGV-RE-----TERKSIGLIHQDNS-------------TD------AMEEIKKIFTPE 639 (758)
T ss_dssp ------TEEEECTTEEEEEEECSSC-C-----------------------------------------CHHHHHHHSCHH
T ss_pred ------CCEEecCCeEEEEecCcch-hh-----hhhcccCccccchH-------------HH------HHHHHHHhcCHH
Confidence 2357788899999888432 11 11234566432110 00 112234469999
Q ss_pred hhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 361 FIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 361 fl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
|++||+.+|.|+||+.+++.+|+...+.. +...+...++.+.++++++++|++++|..++|+|+|+++|++.+.++
T Consensus 640 l~~R~~~~i~~~~l~~~~~~~i~~~~l~~----~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 640 FRNRLDNIIWFDHLSTDVIHQVVDKFIVE----LQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HHTTCSEEEECCCCCHHHHHHHHHHHHHH----HHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHH
T ss_pred HHhhCCcceeeCCCCHHHHHHHHHHHHHH----HHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999975544 44444556788999999999999999999999999999999999987
Q ss_pred HhcC
Q 038067 441 MFEI 444 (510)
Q Consensus 441 l~~~ 444 (510)
+.+.
T Consensus 716 l~~~ 719 (758)
T 1r6b_X 716 LANE 719 (758)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=1.5e-25 Score=225.49 Aligned_cols=261 Identities=22% Similarity=0.328 Sum_probs=183.6
Q ss_pred hHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCCC
Q 038067 75 PKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNVE 154 (510)
Q Consensus 75 ~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 154 (510)
..++.+.|.+.++||+.+++. +..++......+..
T Consensus 8 l~~l~~~l~~~i~G~~~~~~~---------------l~~~i~~~~~~~~~------------------------------ 42 (311)
T 4fcw_A 8 LLRLEEELHKRVVGQDEAIRA---------------VADAIRRARAGLKD------------------------------ 42 (311)
T ss_dssp HHTHHHHHHTTCCSCHHHHHH---------------HHHHHHHHHHTCSC------------------------------
T ss_pred HHHHHHHHhhhcCCHHHHHHH---------------HHHHHHHHhcCCCC------------------------------
Confidence 456888999999999999999 77666433221110
Q ss_pred cchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc-----------cccccchhhHHHHHHHhh
Q 038067 155 NDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA-----------GYVGEDAESVLYKLLAAA 220 (510)
Q Consensus 155 ~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~-----------gy~G~~~~~~l~~l~~~~ 220 (510)
...+..+++|+||||||||++|+++|+.+ +.+++.++|+.+... +|.|....+.+...+.
T Consensus 43 ----~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-- 116 (311)
T 4fcw_A 43 ----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVR-- 116 (311)
T ss_dssp ----TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHH--
T ss_pred ----CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHH--
Confidence 01145689999999999999999999998 568999999877532 3344433234444333
Q ss_pred chhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecC
Q 038067 221 DFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICG 300 (510)
Q Consensus 221 ~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~t 300 (510)
.++++||||||++++... +++.|+++|+.+.+.. . ....++.+|++||+|
T Consensus 117 -----~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~----~--------~~~~~~~~~~iiI~t 166 (311)
T 4fcw_A 117 -----RRPYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTD----S--------HGRTVDFRNTVIIMT 166 (311)
T ss_dssp -----HCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEC----T--------TSCEEECTTEEEEEE
T ss_pred -----hCCCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEc----C--------CCCEEECCCcEEEEe
Confidence 345689999999998765 8999999999655541 1 123678889999999
Q ss_pred CCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHH
Q 038067 301 GAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLV 380 (510)
Q Consensus 301 g~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~ 380 (510)
+|... + .+.... +. ..........+. +.+...|.|+|++||+.++.|.|++.+++.
T Consensus 167 tn~~~-~-~i~~~~-----~~-----------~~~~~~l~~~~~------~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~ 222 (311)
T 4fcw_A 167 SNLGS-P-LILEGL-----QK-----------GWPYERIRDEVF------KVLQQHFRPEFLNRLDEIVVFRPLTKEQIR 222 (311)
T ss_dssp ESTTH-H-HHHTTT-----TS-----------CCCSSTHHHHTH------HHHHHHSCHHHHTTCSEEEECCCCCHHHHH
T ss_pred cccCH-H-HHHhhh-----cc-----------cccHHHHHHHHH------HHHHHhCCHHHHhcCCeEEEeCCCCHHHHH
Confidence 88421 1 111100 00 000000000000 112345899999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 381 QVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 381 ~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
+|+...+..+ ...+...+..+.++++++++|++++|.+.+|+|.|++++++.+..++.+.
T Consensus 223 ~i~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 223 QIVEIQMSYL----RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHHHHTHHH----HHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 9999755444 34444457789999999999999988888999999999999998887654
No 7
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.93 E-value=1.2e-25 Score=254.03 Aligned_cols=264 Identities=20% Similarity=0.238 Sum_probs=183.4
Q ss_pred ccccccCCCCCCCCCCCCC----CChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 038067 54 ESETENGNRNRNSEGNIDL----PTPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQK 129 (510)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~----~~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~ 129 (510)
.....++| ++.|..... .....+.+.|.+.|+||+.+++. +..++.. ......
T Consensus 459 i~~~v~~~--~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~---------------l~~~i~~----~~~~~~-- 515 (758)
T 3pxi_A 459 IAMVVSSW--TGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVA---------------VAKAVRR----ARAGLK-- 515 (758)
T ss_dssp HHHHHHTT--C-------CHHHHSCC-CHHHHHHTTSCSCHHHHHH---------------HHHHHHH----HTTTCS--
T ss_pred HHHHHHHH--hCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHH---------------HHHHHHH----HHcccC--
Confidence 45567889 888876632 23446888899999999999999 7766642 211000
Q ss_pred hhhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccc
Q 038067 130 ELVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVG 206 (510)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G 206 (510)
....+..++||+||||||||++|+++|+.+ +.|++.++|+++.+. +..
T Consensus 516 ----------------------------~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~ 566 (758)
T 3pxi_A 516 ----------------------------DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HST 566 (758)
T ss_dssp ----------------------------CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCC
T ss_pred ----------------------------CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-ccc
Confidence 001144589999999999999999999998 689999999998854 222
Q ss_pred cchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCC
Q 038067 207 EDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGD 286 (510)
Q Consensus 207 ~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~ 286 (510)
. .+.+...++ ..+++|||||||+++.+. +++.|+++||.+.++ +.+++
T Consensus 567 ~--~~~l~~~~~-------~~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~g~~~----~~~g~------ 614 (758)
T 3pxi_A 567 S--GGQLTEKVR-------RKPYSVVLLDAIEKAHPD-------------VFNILLQVLEDGRLT----DSKGR------ 614 (758)
T ss_dssp C-----CHHHHH-------HCSSSEEEEECGGGSCHH-------------HHHHHHHHHHHSBCC---------------
T ss_pred c--cchhhHHHH-------hCCCeEEEEeCccccCHH-------------HHHHHHHHhccCeEE----cCCCC------
Confidence 2 233333333 346789999999998665 899999999966554 22322
Q ss_pred cEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC
Q 038067 287 NIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP 366 (510)
Q Consensus 287 ~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~ 366 (510)
.++..|++||+|+|... .. ... ..+.++..|+|+|++||+
T Consensus 615 --~~~~~~~~iI~ttn~~~----------------~~----------------~~~------~~~~~~~~f~p~l~~Rl~ 654 (758)
T 3pxi_A 615 --TVDFRNTILIMTSNVGA----------------SE----------------KDK------VMGELKRAFRPEFINRID 654 (758)
T ss_dssp --CCBCTTCEEEEEESSST----------------TC----------------CHH------HHHHHHHHSCHHHHTTSS
T ss_pred --EeccCCeEEEEeCCCCh----------------hh----------------HHH------HHHHHHhhCCHHHHhhCC
Confidence 24567777777777221 00 000 011234459999999999
Q ss_pred ceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 367 ILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 367 ~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
.+|.|+||+.+++.+|+...+..+ ...+...+..+.++++++++|++.+|.+.+|+|+|+++|++.+..++.+..
T Consensus 655 ~~i~~~~l~~~~~~~i~~~~l~~~----~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 655 EIIVFHSLEKKHLTEIVSLMSDQL----TKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp EEEECC--CHHHHHHHHHHHHHHH----HHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHHHHHH----HHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999755444 444455688899999999999999999999999999999999999987653
No 8
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.93 E-value=1.9e-25 Score=255.61 Aligned_cols=279 Identities=22% Similarity=0.296 Sum_probs=190.9
Q ss_pred cccccCCCCCCCCCCCCCCChH----HHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhh
Q 038067 55 SETENGNRNRNSEGNIDLPTPK----EICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKE 130 (510)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~----el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~ 130 (510)
...+++| +++|......... .+.+.|.+.|+||+.+++. +..++. +......
T Consensus 527 ~~~v~~~--~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~---------------l~~~i~----~~~~g~~--- 582 (854)
T 1qvr_A 527 AEIVSRW--TGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRA---------------VADAIR----RARAGLK--- 582 (854)
T ss_dssp HHHHHTT--SSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHH---------------HHHHHH----HHGGGCS---
T ss_pred HHHHHHH--hCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHH---------------HHHHHH----HHhcccC---
Confidence 4457889 8877665433332 3566777889999999999 666663 2211000
Q ss_pred hhcccccccccccCCccCCCCCCCcchhhhccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc------
Q 038067 131 LVSDHLYVDSILGSGVKSGNCNVENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ------ 201 (510)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~------ 201 (510)
....+..++||+||||||||++|+++|+.+ +.+|+.++|+++..
T Consensus 583 ---------------------------~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 583 ---------------------------DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp ---------------------------CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGG
T ss_pred ---------------------------CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHH
Confidence 000144689999999999999999999999 78999999998764
Q ss_pred -----ccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCC
Q 038067 202 -----AGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPD 276 (510)
Q Consensus 202 -----~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~ 276 (510)
+||+|++..+.+...+.. .+++|||||||+++... +++.|+++|+.+.++ +
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~~-------~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~----~ 691 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVRR-------RPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLT----D 691 (854)
T ss_dssp C--------------CHHHHHHH-------CSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEEC----C
T ss_pred HcCCCCCCcCccccchHHHHHHh-------CCCeEEEEecccccCHH-------------HHHHHHHHhccCceE----C
Confidence 256676644555554433 45689999999998665 899999999866554 1
Q ss_pred CCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcC
Q 038067 277 NGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYG 356 (510)
Q Consensus 277 ~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~ 356 (510)
.. ...++..|++||+|+|.. .+.+.. .. +++. ........++ +..+..
T Consensus 692 ~~--------g~~vd~~~~iiI~tsn~~-~~~~~~-~~-----~~~~-----------~~~~l~~~v~------~~~~~~ 739 (854)
T 1qvr_A 692 SH--------GRTVDFRNTVIILTSNLG-SPLILE-GL-----QKGW-----------PYERIRDEVF------KVLQQH 739 (854)
T ss_dssp SS--------SCCEECTTEEEEEECCTT-HHHHHH-HH-----HTTC-----------CHHHHHHHHH------HHHHTT
T ss_pred CC--------CCEeccCCeEEEEecCcC-hHHHhh-hc-----cccc-----------chHHHHHHHH------HHHHhh
Confidence 11 235688889999988842 111111 00 0000 0001111111 113567
Q ss_pred CchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 357 LIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 357 ~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
|+|+|++||+.++.|.||+.+++..|+...+..+ ...+...++.+.++++++++|++++|.+.+|+|+|+++|++.
T Consensus 740 f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~----~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~ 815 (854)
T 1qvr_A 740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL----RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 815 (854)
T ss_dssp SCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH----HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHH
T ss_pred CCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH----HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999755444 444455577899999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 038067 437 LTEAMFEI 444 (510)
Q Consensus 437 l~~~l~~~ 444 (510)
+..++.+.
T Consensus 816 ~~~~~~~~ 823 (854)
T 1qvr_A 816 LETPLAQK 823 (854)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2e-21 Score=202.42 Aligned_cols=189 Identities=24% Similarity=0.364 Sum_probs=141.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++||+||||||||++|+++|..++.||+.++++++.. .|+|++ +..++.+|..+ +...++||||||||.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s-k~vGes-e~~vr~lF~~A----r~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-KYIGEG-SRMVRELFVMA----REHAPSIIFMDEIDSIG 254 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC-SSTTHH-HHHHHHHHHHH----HHTCSEEEEEESSSCCT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc-cccchH-HHHHHHHHHHH----HHhCCceEeeecchhhc
Confidence 6789999999999999999999999999999999999985 599987 77888998876 56789999999999998
Q ss_pred hhccCCCC-CCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNG-RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~-~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+.+ .+.....+...||..|||-. ...++++|+|+|..+
T Consensus 255 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------------------~~~~V~vIaATNrpd--------------- 298 (405)
T 4b4t_J 255 STRVEGSGGGDSEVQRTMLELLNQLDGFE---------------------TSKNIKIIMATNRLD--------------- 298 (405)
T ss_dssp TSCSCSSSGGGGHHHHHHHHHHHHHHTTT---------------------CCCCEEEEEEESCSS---------------
T ss_pred cCCCCCCCCCcHHHHHHHHHHHHhhhccC---------------------CCCCeEEEeccCChh---------------
Confidence 66543222 22222356778888887521 124566777776321
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+|+. |||..|.|+.++.++..+|++..+
T Consensus 299 -----------------------------------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~----------- 332 (405)
T 4b4t_J 299 -----------------------------------ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHS----------- 332 (405)
T ss_dssp -----------------------------------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHh-----------
Confidence 26788876 999999999999999999997421
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.+..+. ++--++.||+. ..++.+..|++++......++.+
T Consensus 333 --~~~~l~-~dvdl~~lA~~--t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 333 --RKMNLT-RGINLRKVAEK--MNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp --TTSBCC-SSCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHHHT
T ss_pred --cCCCCC-ccCCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHc
Confidence 122221 11136778875 35677889999998887777654
No 10
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=5.5e-21 Score=208.20 Aligned_cols=207 Identities=20% Similarity=0.269 Sum_probs=140.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccc--------cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQA--------GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~--------gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
++.+++|+||||||||++|+++|..++.++..+++..+... .|+|.. .+.+...+..+ ...++|+|
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~-~~~~~~~~~~a-----~~~~~vl~ 180 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM-PGRIIQGMKKA-----GKLNPVFL 180 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------------------CHHHHHHTT-----CSSSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC-chHHHHHHHHh-----hccCCEEE
Confidence 45689999999999999999999999999999998875431 244443 22233333332 12456999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
|||||++..... ..+++.||++||.... ......+....++.++++||+|+|..
T Consensus 181 lDEid~l~~~~~---------~~~~~~LL~~ld~~~~--------~~~~~~~~~~~~~~~~v~iI~ttN~~--------- 234 (543)
T 3m6a_A 181 LDEIDKMSSDFR---------GDPSSAMLEVLDPEQN--------SSFSDHYIEETFDLSKVLFIATANNL--------- 234 (543)
T ss_dssp EEESSSCC------------------CCGGGTCTTTT--------TBCCCSSSCCCCBCSSCEEEEECSST---------
T ss_pred Ehhhhhhhhhhc---------cCHHHHHHHHHhhhhc--------ceeecccCCeeecccceEEEeccCcc---------
Confidence 999999875531 1268899999974221 11112222234567889999998821
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQ 393 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~ 393 (510)
..++|+|++||+ +|.|++++.+++.+|+...+ ..+
T Consensus 235 -----------------------------------------~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l---~~~ 269 (543)
T 3m6a_A 235 -----------------------------------------ATIPGPLRDRME-IINIAGYTEIEKLEIVKDHL---LPK 269 (543)
T ss_dssp -----------------------------------------TTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTH---HHH
T ss_pred -----------------------------------------ccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHH---HHH
Confidence 137899999996 67999999999999998743 444
Q ss_pred HHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcC
Q 038067 394 YKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPE 446 (510)
Q Consensus 394 ~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~ 446 (510)
+.+........+.++++++..|++. |.+..|+|.|++.|++++..+...+..
T Consensus 270 ~~~~~~~~~~~i~i~~~~l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 270 QIKEHGLKKSNLQLRDQAILDIIRY-YTREAGVRSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp HHHHTTCCGGGCEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccccCCHHHHHHHHHh-CChhhchhHHHHHHHHHHHHHHHHHHh
Confidence 4333333334778999999999984 788899999999999999887766443
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-20 Score=196.77 Aligned_cols=188 Identities=23% Similarity=0.318 Sum_probs=139.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++||+||||||||++|+++|..++.+|+.++++++.. .|+|++ +..++.+|..+ +...++||||||||.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s-k~vGes-ek~ir~lF~~A----r~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-KYLGDG-PRLCRQIFKVA----GENAPSIVFIDEIDAIG 288 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC-SSSSHH-HHHHHHHHHHH----HHTCSEEEEEEEESSSS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh-ccCchH-HHHHHHHHHHH----HhcCCcEEEEehhhhhc
Confidence 6789999999999999999999999999999999999985 599987 67888888776 55788999999999998
Q ss_pred hhccCCCC-CCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNG-RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~-~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..... .+.....+...||..|||.. ...++++|+|+|..+
T Consensus 289 ~~R~~~~~~~~~~~~~~l~~LL~~lDg~~---------------------~~~~ViVIaATNrpd--------------- 332 (437)
T 4b4t_I 289 TKRYDSNSGGEREIQRTMLELLNQLDGFD---------------------DRGDVKVIMATNKIE--------------- 332 (437)
T ss_dssp CCCSCSSCSSCCHHHHHHHHHHHHHHHCC---------------------CSSSEEEEEEESCST---------------
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHhhCcC---------------------CCCCEEEEEeCCChh---------------
Confidence 76543322 22222346667777776410 224567777777321
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+|+. |||..|.|+.++.++..+|++..+
T Consensus 333 -----------------------------------~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l----------- 366 (437)
T 4b4t_I 333 -----------------------------------TLDPALIRPGRIDRKILFENPDLSTKKKILGIHT----------- 366 (437)
T ss_dssp -----------------------------------TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh-----------
Confidence 26778876 999999999999999999997421
Q ss_pred hcCCceeeeCHH-HHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 399 SMNNVKLHFTDD-ALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 399 ~~~~~~l~is~~-al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.+.. ++++ -++.||+. ..++.++.|++++......++.+
T Consensus 367 --~~~~--l~~dvdl~~LA~~--T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 367 --SKMN--LSEDVNLETLVTT--KDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp --TTSC--BCSCCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHHHT
T ss_pred --cCCC--CCCcCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHc
Confidence 1222 1222 26777775 45677889999998887777754
No 12
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=1.6e-20 Score=188.72 Aligned_cols=234 Identities=19% Similarity=0.261 Sum_probs=161.5
Q ss_pred ChHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHH-HHhhhhhhhhhhcccccccccccCCccCCCCC
Q 038067 74 TPKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYK-RIYHSSLQKELVSDHLYVDSILGSGVKSGNCN 152 (510)
Q Consensus 74 ~~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 152 (510)
...++.+.|++.|+||+.+|+. +...+..... +... +. |...
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~---------------l~~~~~~~~~~~~~~---~~---------------g~~~---- 63 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDR---------------IRETAALLLVERARQ---KL---------------GLAH---- 63 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHH---------------HHHHHHHHHHHHHHH---HH---------------TCCS----
T ss_pred cHHHHHHHHHHHccChHHHHHH---------------HHHHHHHHHhHHHHH---Hc---------------CCCC----
Confidence 5678888899889999999998 4433322111 0000 00 0000
Q ss_pred CCcchhhhccCceEEEEccCCChHHHHHHHHHHHh-------CCCeEEEeccccccccccccchhhHHHHHHHhhchhHH
Q 038067 153 VENDEIVELEKSNVLLMGPTGSGKTLLAKTLARIV-------NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVE 225 (510)
Q Consensus 153 ~~~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l-------~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~ 225 (510)
..+..++||+||||||||++|+++|+.+ ..+++.++++++.. .|+|.. ...+..++..
T Consensus 64 -------~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~-~~~g~~-~~~~~~~~~~------ 128 (309)
T 3syl_A 64 -------ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG-QYIGHT-APKTKEVLKR------ 128 (309)
T ss_dssp -------SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC-SSTTCH-HHHHHHHHHH------
T ss_pred -------CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh-hccccc-HHHHHHHHHh------
Confidence 1155689999999999999999999988 34899999999874 477765 3344444443
Q ss_pred HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccc
Q 038067 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVG 305 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~ 305 (510)
+.++||||||+|.+...+.. +.....+++.|+++|+.. ..++++|++++...
T Consensus 129 -~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~-----------------------~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 129 -AMGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN-----------------------RDDLVVILAGYADR 180 (309)
T ss_dssp -HTTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC-----------------------TTTCEEEEEECHHH
T ss_pred -cCCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC-----------------------CCCEEEEEeCChHH
Confidence 36789999999998643211 112345899999999821 24567777777322
Q ss_pred hHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 306 LEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 306 l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
++... .+.|+|++||+.++.|++++.+++.+|+..
T Consensus 181 ~~~~~---------------------------------------------~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 215 (309)
T 3syl_A 181 MENFF---------------------------------------------QSNPGFRSRIAHHIEFPDYSDEELFEIAGH 215 (309)
T ss_dssp HHHHH---------------------------------------------HHSTTHHHHEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHH---------------------------------------------hhCHHHHHhCCeEEEcCCcCHHHHHHHHHH
Confidence 11111 145899999999999999999999999975
Q ss_pred hhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhC-----CCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 386 PKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAM-----AKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 386 ~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~-----~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
.+ ++ ..+.+++++++.+++... .+.+++|.+++++++.+..+...+.
T Consensus 216 ~l----~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 216 ML----DD---------QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp HH----HH---------TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HH---------cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 22 11 235689999999988632 4555599999999999987766544
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.6e-20 Score=198.05 Aligned_cols=189 Identities=24% Similarity=0.310 Sum_probs=138.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++|||||||||||++|+++|..++.||+.++++++.. .|+|.+ +..++.+|..+ +...++||||||+|.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~-~~vGes-e~~ir~lF~~A----~~~aP~IifiDEiDal~ 287 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ-MYIGEG-AKLVRDAFALA----KEKAPTIIFIDELDAIG 287 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS-SCSSHH-HHHHHHHHHHH----HHHCSEEEEEECTHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh-cccchH-HHHHHHHHHHH----HhcCCeEEeecchhhhh
Confidence 6789999999999999999999999999999999999985 599987 67888888776 45788999999999998
Q ss_pred hhccCCCCC-CCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNGR-DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~~-~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+... +.....+...||..|+|-. ...++++|+|+|..+
T Consensus 288 ~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---------------------~~~~ViVIaaTNrp~--------------- 331 (434)
T 4b4t_M 288 TKRFDSEKSGDREVQRTMLELLNQLDGFS---------------------SDDRVKVLAATNRVD--------------- 331 (434)
T ss_dssp CCCSSGGGGTTHHHHHHHHHHHHHHTTSC---------------------SSCSSEEEEECSSCC---------------
T ss_pred hccCCCCCCCchHHHHHHHHHHHHhhccC---------------------CCCCEEEEEeCCCch---------------
Confidence 665322111 1111245667888887411 123566677766221
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+|+. |||..|.|+.++.++..+|++..+ +.
T Consensus 332 -----------------------------------~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~----~~----- 367 (434)
T 4b4t_M 332 -----------------------------------VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS----RK----- 367 (434)
T ss_dssp -----------------------------------CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH----HH-----
T ss_pred -----------------------------------hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh----cC-----
Confidence 26778866 999999999999999999997422 11
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
....-.+ -++.||+. ..++.++.|++++......++.+
T Consensus 368 --~~~~~dv---dl~~lA~~--t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 368 --MTTDDDI---NWQELARS--TDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp --SCBCSCC---CHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCcC---CHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHc
Confidence 1111112 25677775 35677889999999887777654
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.1e-20 Score=195.95 Aligned_cols=189 Identities=22% Similarity=0.293 Sum_probs=139.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++||+||||||||++|+++|..++.+|+.++++++.. .|+|++ +..++.+|..+ +...++||||||+|.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s-k~vGes-ek~ir~lF~~A----r~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGEG-ARMVRELFEMA----RTKKACIIFFDEIDAVG 315 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC-CSSSHH-HHHHHHHHHHH----HHTCSEEEEEECCTTTS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc-ccCCHH-HHHHHHHHHHH----HhcCCceEeeccccccc
Confidence 7889999999999999999999999999999999999985 499987 67888888776 55788999999999998
Q ss_pred hhccCCCCC-CCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNGR-DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~~-~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+... +.....+...||..|+|.. ...++++|+|+|..+
T Consensus 316 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------------------~~~~ViVIaATNrpd--------------- 359 (467)
T 4b4t_H 316 GARFDDGAGGDNEVQRTMLELITQLDGFD---------------------PRGNIKVMFATNRPN--------------- 359 (467)
T ss_dssp BCCSSSSCGGGGHHHHHHHHHHHHHHSSC---------------------CTTTEEEEEECSCTT---------------
T ss_pred ccccCcCCCccHHHHHHHHHHHHHhhccC---------------------CCCcEEEEeCCCCcc---------------
Confidence 765433221 1122245667777776411 224566777776221
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+|+. |||..|.|+.++.++..+|++..+
T Consensus 360 -----------------------------------~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l----------- 393 (467)
T 4b4t_H 360 -----------------------------------TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS----------- 393 (467)
T ss_dssp -----------------------------------SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH-----------
T ss_pred -----------------------------------cCChhhhccccccEEEEeCCcCHHHHHHHHHHHh-----------
Confidence 26778876 999999999999999999997421
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
......-.+ -++.|++. ..++.++.|++++......++.+
T Consensus 394 ~~~~l~~dv---dl~~LA~~--T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 394 KSMSVERGI---RWELISRL--CPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp TTSCBCSSC---CHHHHHHH--CCSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCC---CHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHc
Confidence 111111112 25667775 35677889999998887777664
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.1e-20 Score=196.07 Aligned_cols=189 Identities=23% Similarity=0.312 Sum_probs=139.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++|||||||||||++|+++|..++.||+.++++++.. .|+|.+ +..++.+|..+ +...++||||||||.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s-k~~Ges-e~~ir~~F~~A----~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-KYIGES-ARIIREMFAYA----KEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC-SSSSHH-HHHHHHHHHHH----HHSCSEEEEEECCCSSS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc-ccchHH-HHHHHHHHHHH----HhcCCceeeeecccccc
Confidence 7789999999999999999999999999999999999985 599987 67788888775 45789999999999998
Q ss_pred hhccCCCC-CCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNG-RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~-~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+.. .+.....+...||..|+|.. ...++++|+|+|..+
T Consensus 288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------------------~~~~vivI~ATNrp~--------------- 331 (437)
T 4b4t_L 288 GRRFSEGTSADREIQRTLMELLTQMDGFD---------------------NLGQTKIIMATNRPD--------------- 331 (437)
T ss_dssp CCCSSSCCSSTTHHHHHHHHHHHHHHSSS---------------------CTTSSEEEEEESSTT---------------
T ss_pred cccccCCCCcchHHHHHHHHHHHHhhccc---------------------CCCCeEEEEecCCch---------------
Confidence 76543322 22223356778888888521 124566777776221
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+|+ +|||..|.|+.++.++..+|++..+ +
T Consensus 332 -----------------------------------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~----~------ 366 (437)
T 4b4t_L 332 -----------------------------------TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHT----A------ 366 (437)
T ss_dssp -----------------------------------SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHH----H------
T ss_pred -----------------------------------hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHh----c------
Confidence 2667775 4699999999999999999997422 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.....-.+ -++.|++. ..++.++.|++++......++.+
T Consensus 367 -~~~~~~d~---dl~~lA~~--t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 367 -KVKKTGEF---DFEAAVKM--SDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp -TSCBCSCC---CHHHHHHT--CCSCCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCccc---CHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHc
Confidence 11111112 25677774 45677899999998877777654
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.2e-20 Score=194.73 Aligned_cols=189 Identities=20% Similarity=0.328 Sum_probs=140.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++||+||||||||++|+++|+.++.+|+.++++++.. .|+|.. +..++.+|..+ +...++||||||+|.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~-~~~Ge~-e~~ir~lF~~A----~~~aP~IifiDEiD~i~ 278 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH-KYLGEG-PRMVRDVFRLA----RENAPSIIFIDEVDSIA 278 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC-SSCSHH-HHHHHHHHHHH----HHTCSEEEEEECTHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc-cccchh-HHHHHHHHHHH----HHcCCCeeechhhhhhh
Confidence 6789999999999999999999999999999999999985 599987 67888888776 45788999999999998
Q ss_pred hhccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+.... +.+.....+.+.||..|+|-. ...++++|+|+|..+
T Consensus 279 ~~R~~~~~~~~~~~~r~l~~lL~~ldg~~---------------------~~~~v~vI~aTN~~~--------------- 322 (428)
T 4b4t_K 279 TKRFDAQTGSDREVQRILIELLTQMDGFD---------------------QSTNVKVIMATNRAD--------------- 322 (428)
T ss_dssp CSCSSSCSCCCCHHHHHHHHHHHHHHHSC---------------------SSCSEEEEEEESCSS---------------
T ss_pred ccccCCCCCCChHHHHHHHHHHHHhhCCC---------------------CCCCEEEEEecCChh---------------
Confidence 7654322 222233467888999998511 224567777777321
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecC-CCCHHHHHHHHhchhHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLS-ALNEDQLVQVLMEPKNALGRQYKKM 397 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~-~Ls~eel~~Il~~~~~~l~~~~~~~ 397 (510)
.+.|+|+. |||..|.|+ .++.++...|++..+
T Consensus 323 -----------------------------------~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~---------- 357 (428)
T 4b4t_K 323 -----------------------------------TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIA---------- 357 (428)
T ss_dssp -----------------------------------SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHH----------
T ss_pred -----------------------------------hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHh----------
Confidence 26778875 999999996 678898888886421
Q ss_pred HhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 398 FSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 398 ~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
. +..+. ++--++.||+. ..++.++.|++++......++.+
T Consensus 358 -~--~~~l~-~~~dl~~lA~~--t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 358 -S--KMSLA-PEADLDSLIIR--NDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp -H--SSCBC-TTCCHHHHHHH--TTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -c--CCCCC-cccCHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHC
Confidence 1 11111 11126777775 35677889999998887777654
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.82 E-value=7e-19 Score=179.40 Aligned_cols=191 Identities=20% Similarity=0.362 Sum_probs=144.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
+++++||+||||||||++|+++|+.+ +.+|+.++++++.. .|+|.. +..+..++..+ ....++||||||||.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~-~~~g~~-~~~~~~lf~~a----~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS-KWLGES-EKLVKNLFQLA----RENKPSIIFIDEIDSL 117 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC-SSCCSC-HHHHHHHHHHH----HHTSSEEEEEETTTGG
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh-hhhhHH-HHHHHHHHHHH----HhcCCcEEEeecHHHh
Confidence 56899999999999999999999999 89999999999874 477875 56677777654 3457899999999999
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
...+... .......+++.|+..|++... ...++++|+++|..
T Consensus 118 ~~~~~~~--~~~~~~~~~~~ll~~ld~~~~--------------------~~~~v~vI~atn~~---------------- 159 (322)
T 1xwi_A 118 CGSRSEN--ESEAARRIKTEFLVQMQGVGV--------------------DNDGILVLGATNIP---------------- 159 (322)
T ss_dssp GCCSSSC--CTTHHHHHHHHHHHHHHCSSS--------------------CCTTEEEEEEESCT----------------
T ss_pred ccccccc--cchHHHHHHHHHHHHHhcccc--------------------cCCCEEEEEecCCc----------------
Confidence 8654322 112234578889999984210 12456667666621
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhc
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSM 400 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~ 400 (510)
..+.|.+++||+..+.++.++.++..+|++..+
T Consensus 160 ----------------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l------------- 192 (322)
T 1xwi_A 160 ----------------------------------WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL------------- 192 (322)
T ss_dssp ----------------------------------TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-------------
T ss_pred ----------------------------------ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH-------------
Confidence 126788999999999999999999999987421
Q ss_pred CCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 401 NNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 401 ~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
......+++..++.|++. ..++..+.|+.++......++.+..
T Consensus 193 ~~~~~~l~~~~l~~la~~--t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 193 GTTQNSLTEADFRELGRK--TDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp TTCCBCCCHHHHHHHHHT--CTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 233455789999999985 4566789999999998888876543
No 18
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.81 E-value=2.8e-19 Score=182.04 Aligned_cols=190 Identities=20% Similarity=0.351 Sum_probs=141.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.++++++.. .|+|.. +..+..++..+ ....++||||||||.+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~ 123 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGES-EKLVKQLFAMA----RENKPSIIFIDQVDALT 123 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT-TTGGGH-HHHHHHHHHHH----HHTSSEEEEEECGGGGS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh-cccchH-HHHHHHHHHHH----HhcCCeEEEechhhhhh
Confidence 5689999999999999999999999999999999999874 477765 56667776654 34577999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+... .....+.+++.|+..|++... ...++++|+++|..
T Consensus 124 ~~~~~~--~~~~~~~~~~~ll~~l~~~~~--------------------~~~~v~vi~atn~~----------------- 164 (322)
T 3eie_A 124 GTRGEG--ESEASRRIKTELLVQMNGVGN--------------------DSQGVLVLGATNIP----------------- 164 (322)
T ss_dssp CC--------CCTHHHHHHHHHHHGGGGT--------------------SCCCEEEEEEESCG-----------------
T ss_pred ccCCCC--cchHHHHHHHHHHHHhccccc--------------------cCCceEEEEecCCh-----------------
Confidence 654221 122334588999999974210 11346667666621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.|++++||+..+.++.++.++..+|++..+ .
T Consensus 165 ---------------------------------~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~-------------~ 198 (322)
T 3eie_A 165 ---------------------------------WQLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------------G 198 (322)
T ss_dssp ---------------------------------GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------------T
T ss_pred ---------------------------------hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHh-------------c
Confidence 126789999999999999999999999987411 2
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
+....+++..++.|++. ..++..+.|+.+++.....++.+.
T Consensus 199 ~~~~~~~~~~l~~la~~--t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 199 DTPCVLTKEDYRTLGAM--TEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp TCCCCCCHHHHHHHHHT--TTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999985 345678999999998887777654
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.81 E-value=6.6e-19 Score=181.94 Aligned_cols=190 Identities=20% Similarity=0.349 Sum_probs=138.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.+++.++.. .|+|.. +..+..++..+ ....++||||||||.+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~ 156 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGES-EKLVKQLFAMA----RENKPSIIFIDQVDALT 156 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS-CC---C-HHHHHHHHHHH----HHTSSEEEEEECGGGGT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh-hhcchH-HHHHHHHHHHH----HHcCCeEEEEechHhhc
Confidence 5678999999999999999999999999999999998874 477765 55666666554 34578999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+... .......+++.|+..|++.. -...+++||+++|..
T Consensus 157 ~~r~~~--~~~~~~~~~~~ll~~l~~~~--------------------~~~~~v~vI~atn~~----------------- 197 (355)
T 2qp9_X 157 GTRGEG--ESEASRRIKTELLVQMNGVG--------------------NDSQGVLVLGATNIP----------------- 197 (355)
T ss_dssp C--------CTHHHHHHHHHHHHHHHCC-----------------------CCEEEEEEESCG-----------------
T ss_pred ccCCCC--cchHHHHHHHHHHHHhhccc--------------------ccCCCeEEEeecCCc-----------------
Confidence 654221 11223457889999997411 012456777776621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.|.+++||+..+.+++++.++..+|++..+ .
T Consensus 198 ---------------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------------~ 231 (355)
T 2qp9_X 198 ---------------------------------WQLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------------G 231 (355)
T ss_dssp ---------------------------------GGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-------------T
T ss_pred ---------------------------------ccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH-------------h
Confidence 126788999999999999999999999987421 2
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
.....+++..++.|++.+ .++..|.|+.++++.+..++.+.
T Consensus 232 ~~~~~~~~~~l~~la~~t--~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 232 DTPSVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp TSCBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 334457899999999864 45678999999999998888754
No 20
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.80 E-value=3.1e-19 Score=180.58 Aligned_cols=200 Identities=20% Similarity=0.305 Sum_probs=135.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
...++||+||||||||++|+++++.+ +.||+.++|+.+... .++|+. .+.++.........+..+.+++|||
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~-~g~~tg~~~~~~g~~~~a~~g~L~L 102 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHE-KGAFTGADKRREGRFVEADGGTLFL 102 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCC-SSCCC---CCCCCHHHHHTTSEEEE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCcc-ccccCchhhhhcCHHHhcCCCEEEE
Confidence 44689999999999999999999987 579999999987531 122322 1111111112233445567899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.++.. +|..|+++|+.+.+. ..|.... ...++.+|+++|.. +++.+.
T Consensus 103 DEi~~l~~~-------------~q~~Ll~~l~~~~~~----~~g~~~~--------~~~~~riI~atn~~-l~~~v~--- 153 (304)
T 1ojl_A 103 DEIGDISPL-------------MQVRLLRAIQEREVQ----RVGSNQT--------ISVDVRLIAATHRD-LAEEVS--- 153 (304)
T ss_dssp ESCTTCCHH-------------HHHHHHHHHHSSBCC----BTTBCCC--------CBCCCEEEEEESSC-HHHHHH---
T ss_pred eccccCCHH-------------HHHHHHHHHhcCEee----ecCCccc--------ccCCeEEEEecCcc-HHHHHH---
Confidence 999998765 799999999965543 2332221 12456677777622 222221
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCC--HHHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALN--EDQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls--~eel~~Il~~~~~~l~ 391 (510)
...|+++|..||..+ |.++||. .+|+..++...+
T Consensus 154 ---------------------------------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l---- 190 (304)
T 1ojl_A 154 ---------------------------------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFL---- 190 (304)
T ss_dssp ---------------------------------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHH----
T ss_pred ---------------------------------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHH----
Confidence 124889999999754 8899998 588888887533
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+++...+. .....+++++++.|..+ .|.++.|.|++++++.+.
T Consensus 191 ~~~~~~~~--~~~~~~s~~a~~~L~~~--~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 191 RRFAERNR--KVVKGFTPQAMDLLIHY--DWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHHHHHTT--CCCCCBCHHHHHHHHHC--CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--cCccCCCHHHHHHHHcC--CCCCCHHHHHHHHHHHHH
Confidence 33333221 22356899999999985 456779999999999875
No 21
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.79 E-value=1.4e-18 Score=171.27 Aligned_cols=199 Identities=20% Similarity=0.286 Sum_probs=131.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---CCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---VPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
.+.++||+||||||||++|+++++.+. .|++.++|+.+... ..+|.. .+.+..........+..+.+++|||
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~l 106 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE-AGAFTGAQKRHPGRFERADGGTLFL 106 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHTTTSEEEE
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCc-ccccccccccccchhhhcCCcEEEE
Confidence 346899999999999999999999884 69999999987421 112221 1111111111223344567899999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.+... +|+.|+++|+.+.+. +.|... ....++.+|+|+|.. ++
T Consensus 107 DEi~~l~~~-------------~q~~Ll~~l~~~~~~----~~g~~~--------~~~~~~~iI~atn~~-~~------- 153 (265)
T 2bjv_A 107 DELATAPMM-------------VQEKLLRVIEYGELE----RVGGSQ--------PLQVNVRLVCATNAD-LP------- 153 (265)
T ss_dssp ESGGGSCHH-------------HHHHHHHHHHHCEEC----CCCC----------CEECCCEEEEEESSC-HH-------
T ss_pred echHhcCHH-------------HHHHHHHHHHhCCee----cCCCcc--------cccCCeEEEEecCcC-HH-------
Confidence 999998765 799999999855443 222211 133567778877721 11
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhh-hcCCchhhhcccCc-eEecCCCCH--HHHHHHHhchhHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLV-AYGLIPEFIGRFPI-LVSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~-~~~~~Pefl~R~~~-iv~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+++ ...|+++|++||+. .+.++||++ +++..++...+
T Consensus 154 ------------------------------------~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l--- 194 (265)
T 2bjv_A 154 ------------------------------------AMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFA--- 194 (265)
T ss_dssp ------------------------------------HHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHH---
T ss_pred ------------------------------------HHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHH---
Confidence 122 23488999999974 589999986 77877776533
Q ss_pred HHHHHHHHhcCCcee--eeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVKL--HFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l--~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
+++... .+... .++++++++|..+ .+.++.|.|++++++.+..
T Consensus 195 -~~~~~~---~~~~~~~~~~~~a~~~L~~~--~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 195 -IQMCRE---IKLPLFPGFTERARETLLNY--RWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp -HHHHHH---TTCSSCCCBCHHHHHHHHHS--CCTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHH---hCCCcccCcCHHHHHHHHhC--CCCCCHHHHHHHHHHHHHh
Confidence 333222 23333 6899999999875 4566799999999997753
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.78 E-value=3.8e-18 Score=181.42 Aligned_cols=190 Identities=19% Similarity=0.357 Sum_probs=136.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKI 240 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl 240 (510)
+++++||+||||||||++|+++|+.+ +.+|+.++++++.. .|+|.. +..+..++..+ ....++||||||||.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l 239 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS-KWLGES-EKLVKNLFQLA----RENKPSIIFIDEIDSL 239 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----------C-CCTHHHHHHHH----HHSCSEEEEESCTTTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh-hhcchH-HHHHHHHHHHH----HHcCCeEEEEechHhh
Confidence 56899999999999999999999999 89999999999874 477765 45666776654 3457899999999999
Q ss_pred hhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 241 VKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 241 ~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
...+... . ......+++.||..|++.. ....+++||+|+|..
T Consensus 240 ~~~~~~~-~-~~~~~~~~~~lL~~l~~~~--------------------~~~~~v~vI~atn~~---------------- 281 (444)
T 2zan_A 240 CGSRSEN-E-SEAARRIKTEFLVQMQGVG--------------------VDNDGILVLGATNIP---------------- 281 (444)
T ss_dssp CCCSSCC-C-CGGGHHHHHHHHTTTTCSS--------------------CCCSSCEEEEEESCG----------------
T ss_pred ccCCCCc-c-ccHHHHHHHHHHHHHhCcc--------------------cCCCCEEEEecCCCc----------------
Confidence 7544322 1 1223458888998887411 012456777776621
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhc
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSM 400 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~ 400 (510)
..+.|.|++||+.++.++.++.++...|+...+
T Consensus 282 ----------------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l------------- 314 (444)
T 2zan_A 282 ----------------------------------WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL------------- 314 (444)
T ss_dssp ----------------------------------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-------------
T ss_pred ----------------------------------cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH-------------
Confidence 126789999999999999999999999987421
Q ss_pred CCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 401 NNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 401 ~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
......+++..++.|++.+ .++..+.|..++...+..++.+.
T Consensus 315 ~~~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 315 GSTQNSLTEADFQELGRKT--DGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp TTSCEECCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 2344567899999999863 56678999999999888887664
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=174.80 Aligned_cols=192 Identities=26% Similarity=0.354 Sum_probs=133.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+|+.++++++.. .|+|.. ...+..++..+ ....++||||||||.+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-~~~g~~-~~~~~~~~~~a----~~~~~~il~iDEid~l~ 220 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS-KYVGEG-EKLVRALFAVA----RELQPSIIFIDQVDSLL 220 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------C-HHHHHHHHHHH----HHSSSEEEEEETGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc-cccchH-HHHHHHHHHHH----HhcCCeEEEEECchhhc
Confidence 5679999999999999999999999999999999999875 477765 45556666544 34567899999999996
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+.. ........+++.|+..+++.... ...+++||+++|..
T Consensus 221 ~~~~~--~~~~~~~~~~~~ll~~l~~~~~~-------------------~~~~v~vI~atn~~----------------- 262 (389)
T 3vfd_A 221 CERRE--GEHDASRRLKTEFLIEFDGVQSA-------------------GDDRVLVMGATNRP----------------- 262 (389)
T ss_dssp ----------CTHHHHHHHHHHHHHHHC------------------------CEEEEEEESCG-----------------
T ss_pred ccCCC--ccchHHHHHHHHHHHHhhccccc-------------------CCCCEEEEEecCCc-----------------
Confidence 54321 11223346888999999853211 12456777776621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.+.+++||+.++.|..++.+++.+|+...+ .
T Consensus 263 ---------------------------------~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~-------------~ 296 (389)
T 3vfd_A 263 ---------------------------------QELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL-------------C 296 (389)
T ss_dssp ---------------------------------GGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-------------T
T ss_pred ---------------------------------hhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH-------------H
Confidence 126788999999989999999999999986411 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
.....++++++..|++.+ .++..+.|..++......++.++.
T Consensus 297 ~~~~~l~~~~~~~la~~~--~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 297 KQGSPLTQKELAQLARMT--DGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp TSCCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred hcCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 234567899999999864 445577898888887777777654
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=1.8e-17 Score=168.89 Aligned_cols=182 Identities=22% Similarity=0.299 Sum_probs=130.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+..++||+||||||||++|+++|+.++.+|+.+++..+.. .+.+...+.. .+.+++||||||+.+.
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--------SGDLAAILTN------LSEGDILFIDEIHRLS 119 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS--------HHHHHHHHHT------CCTTCEEEEETGGGCC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc--------hhHHHHHHHh------ccCCCEEEEechhhcC
Confidence 4568999999999999999999999999999999987642 2233344332 2467999999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.. +++.|++.|+.+.+.+.. .. ......+.++..++++|+++|..
T Consensus 120 ~~-------------~~~~Ll~~l~~~~~~~~~--~~---~~~~~~~~~~~~~~~~i~atn~~----------------- 164 (338)
T 3pfi_A 120 PA-------------IEEVLYPAMEDYRLDIII--GS---GPAAQTIKIDLPKFTLIGATTRA----------------- 164 (338)
T ss_dssp HH-------------HHHHHHHHHHTSCC--------------CCCCCCCCCCCEEEEEESCG-----------------
T ss_pred HH-------------HHHHHHHHHHhccchhhc--cc---CccccceecCCCCeEEEEeCCCc-----------------
Confidence 54 799999999965544320 00 00111122334467788877621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.|+|++|++.++.|.+++.+++..++.... . .
T Consensus 165 ---------------------------------~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~----~-------~- 199 (338)
T 3pfi_A 165 ---------------------------------GMLSNPLRDRFGMQFRLEFYKDSELALILQKAA----L-------K- 199 (338)
T ss_dssp ---------------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH----H-------H-
T ss_pred ---------------------------------cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHH----H-------h-
Confidence 127789999999999999999999998887421 1 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
..+.+++++++.|++. +.++.|.+.+++++.+..+.
T Consensus 200 -~~~~~~~~~~~~l~~~---~~G~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 200 -LNKTCEEKAALEIAKR---SRSTPRIALRLLKRVRDFAD 235 (338)
T ss_dssp -TTCEECHHHHHHHHHT---TTTCHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCHHHHHHHHHH---HCcCHHHHHHHHHHHHHHHH
Confidence 2356899999999984 25668999999998765443
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=171.12 Aligned_cols=192 Identities=20% Similarity=0.338 Sum_probs=138.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.++++++.. .|.|.. ...+..++..+ ....++||||||||.+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~-~~~g~~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~ 189 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALFAVA----RCQQPAVIFIDEIDSLL 189 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC-SSTTHH-HHHHHHHHHHH----HHTCSEEEEEETHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc-cccchH-HHHHHHHHHHH----HhcCCeEEEEeCchhhh
Confidence 5679999999999999999999999999999999999874 366654 44555555443 34567999999999997
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+.. +.......+++.|+..+++.... ...+++||+++|..
T Consensus 190 ~~~~~--~~~~~~~~~~~~lL~~l~~~~~~-------------------~~~~v~vI~atn~~----------------- 231 (357)
T 3d8b_A 190 SQRGD--GEHESSRRIKTEFLVQLDGATTS-------------------SEDRILVVGATNRP----------------- 231 (357)
T ss_dssp BC--------CHHHHHHHHHHHHHHC-----------------------CCCCEEEEEEESCG-----------------
T ss_pred ccCCC--CcchHHHHHHHHHHHHHhccccc-------------------CCCCEEEEEecCCh-----------------
Confidence 54321 11223345788999999842211 12356777776621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.+.+++||+..+.+..++.++..+|+... . .
T Consensus 232 ---------------------------------~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~----~-------~-- 265 (357)
T 3d8b_A 232 ---------------------------------QEIDEAARRRLVKRLYIPLPEASARKQIVINL----M-------S-- 265 (357)
T ss_dssp ---------------------------------GGBCHHHHTTCCEEEECCCCCHHHHHHHHHHH----H-------H--
T ss_pred ---------------------------------hhCCHHHHhhCceEEEeCCcCHHHHHHHHHHH----H-------h--
Confidence 01567889999999999999999999988641 1 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
...+.+++++++.|++.+ .++..+.|+.++......++.++.
T Consensus 266 ~~~~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 266 KEQCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp TSCBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred hcCCCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHhh
Confidence 223557899999999864 455678999999988877776553
No 26
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.75 E-value=2.3e-17 Score=166.38 Aligned_cols=190 Identities=24% Similarity=0.349 Sum_probs=132.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.+++.++.. .|+|.. +..+..++..+ ....++||||||||.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~-~~~g~~-~~~~~~~f~~a----~~~~p~il~iDEid~l~ 121 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGES-EANVREIFDKA----RQAAPCVLFFDELDSIA 121 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH-HHHTTC-TTHHHHHHHHH----HHTCSEEEEECSTTHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh-hhcCch-HHHHHHHHHHH----HhcCCeEEEEEChHHHh
Confidence 5678999999999999999999999999999999998864 377765 45566666654 33567999999999998
Q ss_pred hhccCCCC-CCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNG-RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~-~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+.. .......+++.||..|++.. ...++++|+++|..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~lL~~l~~~~---------------------~~~~v~vi~atn~~~--------------- 165 (301)
T 3cf0_A 122 KARGGNIGDGGGAADRVINQILTEMDGMS---------------------TKKNVFIIGATNRPD--------------- 165 (301)
T ss_dssp HHHTTTTCCSSCSCCHHHHHHHHHHHSSC---------------------TTSSEEEEEEESCGG---------------
T ss_pred hccCCCcCCcchHHHHHHHHHHHHhhccc---------------------CCCCEEEEEecCCcc---------------
Confidence 65432211 11122358899999998410 123566777766210
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|.+++ ||+..+.|++++.++..+|++..+
T Consensus 166 -----------------------------------~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l----------- 199 (301)
T 3cf0_A 166 -----------------------------------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL----------- 199 (301)
T ss_dssp -----------------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------
T ss_pred -----------------------------------ccChHHhcCCccceEEecCCcCHHHHHHHHHHHH-----------
Confidence 14566666 999999999999999999886421
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
...+....+ .++.++.. ..++..+.|++++++.+..++.+.
T Consensus 200 ~~~~~~~~~---~~~~la~~--~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 200 RKSPVAKDV---DLEFLAKM--TNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp TTSCBCSSC---CHHHHHHT--CSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCccc---hHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112222122 24566664 334556799999999888776543
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.75 E-value=3e-17 Score=164.20 Aligned_cols=193 Identities=27% Similarity=0.363 Sum_probs=136.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.++++++.. .|.|.. ...+..++..+ ....++||||||+|.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~~~~-~~~~~~~~~~~----~~~~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS-KYVGDG-EKLVRALFAVA----RHMQPSIIFIDEVDSLL 126 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS-SSCSCH-HHHHHHHHHHH----HHTCSEEEEEETGGGTS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh-cccchH-HHHHHHHHHHH----HHcCCcEEEeccHHHhc
Confidence 5679999999999999999999999999999999998874 366654 44555555443 34578999999999997
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+... . ......+++.|+..+++.... -...++++|+++|..
T Consensus 127 ~~~~~~-~-~~~~~~~~~~ll~~l~~~~~~------------------~~~~~v~vi~~tn~~----------------- 169 (297)
T 3b9p_A 127 SERSSS-E-HEASRRLKTEFLVEFDGLPGN------------------PDGDRIVVLAATNRP----------------- 169 (297)
T ss_dssp BCC-------CCSHHHHHHHHHHHHHCC------------------------CEEEEEEESCG-----------------
T ss_pred cccccC-c-chHHHHHHHHHHHHHhccccc------------------CCCCcEEEEeecCCh-----------------
Confidence 553221 1 112335788899988742110 012346677766621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.|.+++||+..+.++.++.++...|+...+ .
T Consensus 170 ---------------------------------~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~-----------~-- 203 (297)
T 3b9p_A 170 ---------------------------------QELDEAALRRFTKRVYVSLPDEQTRELLLNRLL-----------Q-- 203 (297)
T ss_dssp ---------------------------------GGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-----------G--
T ss_pred ---------------------------------hhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH-----------H--
Confidence 025678899999999999999999888886411 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
.....+++++++.|++.+ .++..+.|+.+++.....++.+..
T Consensus 204 ~~~~~~~~~~~~~la~~~--~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 204 KQGSPLDTEALRRLAKIT--DGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp GGSCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred hcCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 123457899999999864 455568999999888777776653
No 28
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.74 E-value=1.3e-18 Score=195.71 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=122.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++||+||||||||++|+++|..++.||+.++.+++.. .|+|++ +..++.+|..+ ++..++||||||||.+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s-~~vGes-e~~vr~lF~~A----r~~~P~IifiDEiDsl~ 583 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGES-EANVREIFDKA----RQAAPCVLFFDELDSIA 583 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT-TTCSSC-HHHHHHHHHHH----HTTCSEEEECSCGGGCC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc-cccchH-HHHHHHHHHHH----HHcCCceeechhhhHHh
Confidence 6788999999999999999999999999999999999984 599997 77889999876 45688999999999998
Q ss_pred hhccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+. ......+++.+.||..|||-. ...++++|+++|..+
T Consensus 584 ~~R~~~~~~~~~~~~rv~~~lL~~mdg~~---------------------~~~~V~vi~aTN~p~--------------- 627 (806)
T 3cf2_A 584 KARGGNIGDGGGAADRVINQILTEMDGMS---------------------TKKNVFIIGATNRPD--------------- 627 (806)
T ss_dssp --------------CHHHHHHHHHHHSSC---------------------SSSSEEEECC-CCSS---------------
T ss_pred hccCCCCCCCchHHHHHHHHHHHHHhCCC---------------------CCCCEEEEEeCCCch---------------
Confidence 7664332 122233469999999998521 123466666666221
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+++. |||.+|.|+.++.++..+|++..+
T Consensus 628 -----------------------------------~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l----------- 661 (806)
T 3cf2_A 628 -----------------------------------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL----------- 661 (806)
T ss_dssp -----------------------------------SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS-----------
T ss_pred -----------------------------------hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh-----------
Confidence 26778887 999999999999999999997532
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
.+..+. ++--++.|++. ..++....|.+++......++.+.
T Consensus 662 --~~~~~~-~~~dl~~la~~--t~g~SGadi~~l~~~A~~~a~r~~ 702 (806)
T 3cf2_A 662 --RKSPVA-KDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp --SCC--C-CC------------------CHHHHHHHHHHHHHHHH
T ss_pred --cCCCCC-CCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 122111 12235667764 345566788888888777777654
No 29
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.72 E-value=2.6e-17 Score=185.17 Aligned_cols=187 Identities=24% Similarity=0.367 Sum_probs=139.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
+++++||+||||||||++|+++|+.++.+++.++++++.. .|+|+. +..++.+|..+ +...++||||||||.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s-k~~ges-e~~lr~lF~~A----~~~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGES-ESNLRKAFEEA----EKNAPAIIFIDELDAIA 310 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS-SCTTHH-HHHHHHHHHHH----TTSCSEEEEEESGGGTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc-ccchHH-HHHHHHHHHHH----HHcCCeEEEEehhcccc
Confidence 7789999999999999999999999999999999999984 488876 67788888876 34678999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+.+..+ .....+.+.+.|+..|++-. ...++++|+++|..+
T Consensus 311 ~~r~~~--~~~~~~riv~~LL~~mdg~~---------------------~~~~V~VIaaTN~~d---------------- 351 (806)
T 3cf2_A 311 PKREKT--HGEVERRIVSQLLTLMDGLK---------------------QRAHVIVMAATNRPN---------------- 351 (806)
T ss_dssp CTTTTC--CCTTHHHHHHHHHTHHHHCC---------------------GGGCEEEEEECSSTT----------------
T ss_pred cccCCC--CChHHHHHHHHHHHHHhccc---------------------ccCCEEEEEecCChh----------------
Confidence 665432 22233468899999998411 123566777766211
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|+|++ ||+..|.+..++.++..+|++..+
T Consensus 352 ----------------------------------~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l------------ 385 (806)
T 3cf2_A 352 ----------------------------------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT------------ 385 (806)
T ss_dssp ----------------------------------TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC------------
T ss_pred ----------------------------------hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh------------
Confidence 25667776 999999999999999999997421
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.+..+. ++--+..|+.. ..++.+..|..++.+....++.+
T Consensus 386 -~~~~~~-~dvdl~~lA~~--T~GfsgaDL~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 386 -KNMKLA-DDVDLEQVANE--THGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp -SSSEEC-TTCCHHHHHHH--CCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCC-cccCHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 222222 22346777775 34566788888888877666543
No 30
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=2.3e-17 Score=171.31 Aligned_cols=201 Identities=21% Similarity=0.355 Sum_probs=142.0
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhCC--CeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVNV--PFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVYI 234 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~~--p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~i 234 (510)
....+++++|++||||+.+|+++++..+. +|+.+||+.+.+. ..+|+. .+.++...+...+.+..+.+|+|||
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~-~g~~tga~~~~~g~~~~a~~gtlfl 228 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHE-KGAFTGALTRKKGKLELADQGTLFL 228 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEEC-SCSSSSCCCCEECHHHHTTTSEEEE
T ss_pred ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcc-ccccCCcccccCChHhhcCCCeEEe
Confidence 35567999999999999999999998854 4999999987532 123332 1222222222345566778999999
Q ss_pred cchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhc
Q 038067 235 DEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERR 314 (510)
Q Consensus 235 DEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~ 314 (510)
|||+.++.. +|..||++|+.+.++ +.|+... ...++.+|+++| .++.+.+.
T Consensus 229 dei~~l~~~-------------~Q~~Ll~~l~~~~~~----~~g~~~~--------~~~~~rii~at~-~~l~~~v~--- 279 (368)
T 3dzd_A 229 DEVGELDQR-------------VQAKLLRVLETGSFT----RLGGNQK--------IEVDIRVISATN-KNLEEEIK--- 279 (368)
T ss_dssp ETGGGSCHH-------------HHHHHHHHHHHSEEC----CBTCCCB--------EECCCEEEEEES-SCHHHHHH---
T ss_pred cChhhCCHH-------------HHHHHHHHHHhCCcc----cCCCCcc--------eeeeeEEEEecC-CCHHHHHH---
Confidence 999999876 899999999966554 2332221 234566777666 23333222
Q ss_pred ccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHHHH
Q 038067 315 QDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNALG 391 (510)
Q Consensus 315 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~l~ 391 (510)
+..|+++|+.|+..+ |.++||.+ +|+..++.. ++
T Consensus 280 ---------------------------------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~----~l 316 (368)
T 3dzd_A 280 ---------------------------------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEY----FL 316 (368)
T ss_dssp ---------------------------------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHH----HH
T ss_pred ---------------------------------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHH----HH
Confidence 234899999999885 88999998 899888875 34
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+++...+ ......+++++++.|.. |.|.++.|+|+++|++.+.
T Consensus 317 ~~~~~~~--~~~~~~~~~~a~~~L~~--~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 317 KKFAKEY--KKNCFELSEETKEYLMK--QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHT--TCCCCCBCHHHHHHHHT--CCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCCCCcCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 4444332 22336799999999987 5667779999999999774
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.71 E-value=1.7e-17 Score=166.85 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=102.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.++++++.. .|+|.. ...+..++..+....+...++||||||||++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC-C---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh-ccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 5678999999999999999999999999999999999874 487775 56677777665333345578999999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
...............+++.|+++|++....- .+ +.......++++||+|+|..+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~----~~------~~~~~~~~~~v~vI~ttN~~~---------------- 166 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQ----LP------GMYNKQENARVPIIVTGNDFS---------------- 166 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC---------------------CCCCCCEEEECSSCC----------------
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccc----cc------cccccccCCCcEEEEecCCcc----------------
Confidence 6443222223334468999999998432210 00 000123456788888888221
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhc
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
.+.|+|+ +||+.++.+ | +.++..+|++.
T Consensus 167 ----------------------------------~ld~al~R~~R~d~~i~~-P-~~~~r~~Il~~ 196 (293)
T 3t15_A 167 ----------------------------------TLYAPLIRDGRMEKFYWA-P-TREDRIGVCTG 196 (293)
T ss_dssp ----------------------------------C--CHHHHHHHEEEEEEC-C-CHHHHHHHHHH
T ss_pred ----------------------------------cCCHHHhCCCCCceeEeC-c-CHHHHHHHHHH
Confidence 2566777 599988764 3 99999999874
No 32
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.71 E-value=6.1e-17 Score=169.15 Aligned_cols=200 Identities=16% Similarity=0.325 Sum_probs=140.8
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhC---CCeEEEeccccccc----cccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVN---VPFTITDATALTQA----GYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~s~l~~~----gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
....+++++|++|||||++|++++.... .||+.+||+.+.+. ..+|+. .+.++.......+.+..+.+|+||
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~-~g~~tga~~~~~g~~~~a~~gtlf 236 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYE-KGAFTGAVSSKEGFFELADGGTLF 236 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBC-TTSSTTCCSCBCCHHHHTTTSEEE
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCC-CCCCCCcccccCCceeeCCCcEEE
Confidence 3557899999999999999999999884 69999999987532 233333 122222222234556678899999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
||||+.++.. +|..|+++|+.+.++ +.|+... ...++.+|+++|. ++++.+.
T Consensus 237 ldei~~l~~~-------------~q~~Ll~~l~~~~~~----~~g~~~~--------~~~~~rii~at~~-~l~~~~~-- 288 (387)
T 1ny5_A 237 LDEIGELSLE-------------AQAKLLRVIESGKFY----RLGGRKE--------IEVNVRILAATNR-NIKELVK-- 288 (387)
T ss_dssp EESGGGCCHH-------------HHHHHHHHHHHSEEC----CBTCCSB--------EECCCEEEEEESS-CHHHHHH--
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEE----eCCCCce--------eeccEEEEEeCCC-CHHHHHH--
Confidence 9999999876 899999999966554 2333321 2345667776662 3333322
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCce-EecCCCCH--HHHHHHHhchhHHH
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPIL-VSLSALNE--DQLVQVLMEPKNAL 390 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~i-v~f~~Ls~--eel~~Il~~~~~~l 390 (510)
+..|+++|..|+..+ |.++||.+ +|+..++...
T Consensus 289 ----------------------------------------~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~---- 324 (387)
T 1ny5_A 289 ----------------------------------------EGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHF---- 324 (387)
T ss_dssp ----------------------------------------TTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHH----
T ss_pred ----------------------------------------cCCccHHHHHhhcCCeecCCcchhccccHHHHHHHH----
Confidence 234899999999764 88899975 8888888753
Q ss_pred HHHHHHHHhcCCce-eeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 391 GRQYKKMFSMNNVK-LHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 391 ~~~~~~~~~~~~~~-l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
++++...+ +.. ..+++++++.|.. |.|.++.|+|++++++.+.
T Consensus 325 l~~~~~~~---~~~~~~~~~~a~~~l~~--~~wpGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 325 LKKFSRKY---AKEVEGFTKSAQELLLS--YPWYGNVRELKNVIERAVL 368 (387)
T ss_dssp HHHHHHHT---TCCCCEECHHHHHHHHH--SCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CCCCCCCCHHHHHHHHh--CCCCcHHHHHHHHHHHHHH
Confidence 34443322 323 4699999999998 5667789999999999875
No 33
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.71 E-value=4.7e-16 Score=152.46 Aligned_cols=188 Identities=24% Similarity=0.334 Sum_probs=126.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.+++|+||||||||++|+++|+.++.|++.++++++... |.|.. ...+..+++.+ ....++++||||+|.+.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~~~a----~~~~~~il~iDeid~l~ 117 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVG-ASRVRDMFEQA----KKAAPCIIFIDEIDAVG 117 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCCCC-HHHHHHHHHHH----HTTCSEEEEETTHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhhhh-HHHHHHHHHHH----HHcCCeeehhhhhhhhc
Confidence 45689999999999999999999999999999999998753 66665 45566666554 22456899999999998
Q ss_pred hhccCCCCC-CCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNGR-DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~~-~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+...... ......+++.|+..+++.. ...++++|+++|..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------------~~~~~~vI~~tn~~~--------------- 161 (257)
T 1lv7_A 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFE---------------------GNEGIIVIAATNRPD--------------- 161 (257)
T ss_dssp CCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------------------SSSCEEEEEEESCTT---------------
T ss_pred cCCCCCcCCCchHHHHHHHHHHHHhhCcc---------------------cCCCEEEEEeeCCch---------------
Confidence 643321111 1112246778888887310 123456666655110
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|.+++ ||+..+.+..++.++..+|++..+
T Consensus 162 -----------------------------------~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~----------- 195 (257)
T 1lv7_A 162 -----------------------------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM----------- 195 (257)
T ss_dssp -----------------------------------TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH-----------
Confidence 14455555 999999999999999988886421
Q ss_pred hcCCceeeeCHHH-HHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 399 SMNNVKLHFTDDA-LRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 399 ~~~~~~l~is~~a-l~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
. .. .+++++ +..++.. ..++.+|.|++++++.+..+..+
T Consensus 196 ~--~~--~l~~~~~~~~la~~--~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 196 R--RV--PLAPDIDAAIIARG--TPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp T--TS--CBCTTCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred h--cC--CCCccccHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 1 11 123332 4555553 34457999999999988777654
No 34
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.70 E-value=2e-16 Score=169.01 Aligned_cols=187 Identities=26% Similarity=0.377 Sum_probs=127.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.++||+||||||||++|+++|..++.||+.++++++... |+|.. ...++.+|..+ ....++||||||||.+.
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~g~~-~~~~r~lf~~A----~~~~p~ILfIDEid~l~ 121 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVG-AARVRDLFAQA----KAHAPCIVFIDEIDAVG 121 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CTTHH-HHHHHHHHHHH----HHTCSEEEEEETGGGTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-Hhccc-HHHHHHHHHHH----HhcCCCEEEEechhhhh
Confidence 45679999999999999999999999999999999998754 77765 45566666654 33568999999999997
Q ss_pred hhccCC-CCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRN-NGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~-~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+... .+.+.....+++.|+..|++- + ...++++|+++|..+
T Consensus 122 ~~r~~~~~g~~~~~~~~l~~LL~~ld~~---------~------------~~~~viVIaaTn~~~--------------- 165 (476)
T 2ce7_A 122 RHRGAGLGGGHDEREQTLNQLLVEMDGF---------D------------SKEGIIVMAATNRPD--------------- 165 (476)
T ss_dssp CC---------CHHHHHHHHHHHHHHHS---------C------------GGGTEEEEEEESCGG---------------
T ss_pred hhcccccCcCcHHHHHHHHHHHHHHhcc---------C------------CCCCEEEEEecCChh---------------
Confidence 654321 122333346788999988731 0 123566777666211
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhh--cccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFI--GRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl--~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|.++ +||+..+.+++++.++..+|++..+
T Consensus 166 -----------------------------------~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~----------- 199 (476)
T 2ce7_A 166 -----------------------------------ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT----------- 199 (476)
T ss_dssp -----------------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH-----------
T ss_pred -----------------------------------hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH-----------
Confidence 1445555 4999999999999999998886321
Q ss_pred hcCCceeeeCHH-HHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 399 SMNNVKLHFTDD-ALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 399 ~~~~~~l~is~~-al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
. +.. +.++ .+..|+.. .+++.+|.|++++++....+..
T Consensus 200 ~--~~~--l~~~v~l~~la~~--t~G~sgadL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 200 R--NKP--LAEDVNLEIIAKR--TPGFVGADLENLVNEAALLAAR 238 (476)
T ss_dssp T--TSC--BCTTCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHHH
T ss_pred H--hCC--CcchhhHHHHHHh--cCCCcHHHHHHHHHHHHHHHHH
Confidence 1 111 2222 25667664 3444468999999987766653
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=155.42 Aligned_cols=188 Identities=22% Similarity=0.288 Sum_probs=115.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.++||+||||||||++|+++|+.++.+++.++++++... |.|.. ...+..++..+ ....++||||||+|.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~a----~~~~~~vl~iDeid~l~ 111 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGGLG-AARVRSLFKEA----RARAPCIVYIDEIDAVG 111 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS-STTHH-HHHHHHHHHHH----HHTCSEEEEEECC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh-ccChh-HHHHHHHHHHH----HhcCCeEEEEeCcchhh
Confidence 56789999999999999999999999999999999988643 54443 44555555543 23457899999999997
Q ss_pred hhccCCCC--CCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 242 KAESRNNG--RDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 242 ~~~~~~~~--~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
..+..... .+......+..|+..+++. + ...++++|+|+|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---------~------------~~~~~~vi~~tn~~~-------------- 156 (262)
T 2qz4_A 112 KKRSTTMSGFSNTEEEQTLNQLLVEMDGM---------G------------TTDHVIVLASTNRAD-------------- 156 (262)
T ss_dssp ---------------CHHHHHHHHHHHTC---------C------------TTCCEEEEEEESCGG--------------
T ss_pred ccccccccCccchhHHHHHHHHHHHhhCc---------C------------CCCCEEEEecCCChh--------------
Confidence 54321110 0111123456666666521 1 123566666665210
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKM 397 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~ 397 (510)
.+.|++++ ||+..+.|.+++.++..+|++..+ ++
T Consensus 157 ------------------------------------~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~----~~---- 192 (262)
T 2qz4_A 157 ------------------------------------ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL----KS---- 192 (262)
T ss_dssp ------------------------------------GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHH----HH----
T ss_pred ------------------------------------hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHH----Hh----
Confidence 13456666 999999999999999999887522 11
Q ss_pred HhcCCceeeeCHH-HHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 398 FSMNNVKLHFTDD-ALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 398 ~~~~~~~l~is~~-al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
.+ +..+.+ ....|+.. ..++..|.|+++++.....+.
T Consensus 193 ---~~--~~~~~~~~~~~l~~~--~~g~~~~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 193 ---LK--LTQSSTFYSQRLAEL--TPGFSGADIANICNEAALHAA 230 (262)
T ss_dssp ---TT--CCBTHHHHHHHHHHT--CTTCCHHHHHHHHHHHHTC--
T ss_pred ---CC--CCcchhhHHHHHHHH--CCCCCHHHHHHHHHHHHHHHH
Confidence 12 233444 34677764 344556888888887664443
No 36
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=4.4e-16 Score=154.61 Aligned_cols=190 Identities=26% Similarity=0.370 Sum_probs=126.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.+++.++... |.|.. ...+..++..+ ....++||||||+|.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~~~-~~~~~~~~~~~----~~~~~~vl~iDEid~l~ 123 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGEG-ASLVKDIFKLA----KEKAPSIIFIDEIDAIA 123 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-STTHH-HHHHHHHHHHH----HHTCSEEEEEETTHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-ccchH-HHHHHHHHHHH----HHcCCeEEEEECHHHhc
Confidence 56789999999999999999999999999999999988743 66654 44455555443 34567899999999997
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+.... .......+..|+.+++... +. . ...++++|+|+|..
T Consensus 124 ~~~~~~~--~~~~~~~~~~l~~ll~~~~--------~~--~--------~~~~~~vI~ttn~~----------------- 166 (285)
T 3h4m_A 124 AKRTDAL--TGGDREVQRTLMQLLAEMD--------GF--D--------ARGDVKIIGATNRP----------------- 166 (285)
T ss_dssp BCCSSSC--CGGGGHHHHHHHHHHHHHH--------TT--C--------SSSSEEEEEECSCG-----------------
T ss_pred ccCcccc--CCccHHHHHHHHHHHHHhh--------CC--C--------CCCCEEEEEeCCCc-----------------
Confidence 5432211 1112235666666664100 00 0 11346667766621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
..+.|.+++ ||+.++.|++++.++..+|++..+ .
T Consensus 167 ---------------------------------~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~-----------~ 202 (285)
T 3h4m_A 167 ---------------------------------DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT-----------R 202 (285)
T ss_dssp ---------------------------------GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH-----------T
T ss_pred ---------------------------------hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH-----------h
Confidence 014566776 999999999999999999986411 1
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
...+. .+..+..|+... .++..|.++.++......++.+
T Consensus 203 --~~~~~-~~~~~~~l~~~~--~g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 203 --KMNLA-EDVNLEEIAKMT--EGCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp --TSCBC-TTCCHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHT
T ss_pred --cCCCC-CcCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHh
Confidence 11121 222356666643 3556899999999888777765
No 37
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.69 E-value=2e-16 Score=161.19 Aligned_cols=204 Identities=21% Similarity=0.255 Sum_probs=126.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-------CeEEEecccccccc----------------c----cccchhhH----
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-------PFTITDATALTQAG----------------Y----VGEDAESV---- 212 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-------p~~~~~~s~l~~~g----------------y----~G~~~~~~---- 212 (510)
.++||+||||||||++|+++++.++. ++ +|....... + .+......
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 57999999999999999999999862 32 222211000 0 01110011
Q ss_pred -HHHHHHhh-----chhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCC
Q 038067 213 -LYKLLAAA-----DFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGD 286 (510)
Q Consensus 213 -l~~l~~~~-----~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~ 286 (510)
+...+... .+.+..+.++|||||||+++... +++.|+++|+.+...+. ..|..
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~--~~g~~------ 181 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVE--RDGLS------ 181 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEEC--CTTCC------
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEE--ecceE------
Confidence 11112111 23344566899999999998765 79999999996544433 22221
Q ss_pred cEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC
Q 038067 287 NIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP 366 (510)
Q Consensus 287 ~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~ 366 (510)
.-...++++|+|+|.. ...+.|+|++||+
T Consensus 182 --~~~~~~~~li~~~n~~-------------------------------------------------~~~l~~~L~~R~~ 210 (350)
T 1g8p_A 182 --IRHPARFVLVGSGNPE-------------------------------------------------EGDLRPQLLDRFG 210 (350)
T ss_dssp --EEEECCEEEEEEECSC-------------------------------------------------SCCCCHHHHTTCS
T ss_pred --EeeCCceEEEEEeCCC-------------------------------------------------CCCCCHHHHhhcc
Confidence 1223467777776611 0137889999999
Q ss_pred ceEecCCCC-HHHHHHHHhchhHH----------------HHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCC-ChhH
Q 038067 367 ILVSLSALN-EDQLVQVLMEPKNA----------------LGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNT-GARG 428 (510)
Q Consensus 367 ~iv~f~~Ls-~eel~~Il~~~~~~----------------l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~-gaR~ 428 (510)
..+.+.+++ .++..+|+...+.. ..+.+..........+.++++++++|++.++..+. ++|.
T Consensus 211 ~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~ 290 (350)
T 1g8p_A 211 LSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRG 290 (350)
T ss_dssp EEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHH
T ss_pred eEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccH
Confidence 988999994 66666888652110 00111100111123458999999999999877666 7899
Q ss_pred HHHHHHHHHHHHHh
Q 038067 429 LRALLENILTEAMF 442 (510)
Q Consensus 429 L~~~ie~~l~~~l~ 442 (510)
+.++++.....+..
T Consensus 291 ~~~ll~~a~~~A~~ 304 (350)
T 1g8p_A 291 ELTLLRSARALAAL 304 (350)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987665554
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.69 E-value=7.1e-16 Score=155.58 Aligned_cols=179 Identities=22% Similarity=0.360 Sum_probs=128.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.++||+||||||||++|+++++.++.+++.+++..+.. ...+...+.. ..+.+++||||||+.+.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--------~~~l~~~l~~-----~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--------PGDLAAILAN-----SLEEGDILFIDEIHRLS 103 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS--------HHHHHHHHTT-----TCCTTCEEEETTTTSCC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC--------hHHHHHHHHH-----hccCCCEEEEECCcccc
Confidence 4468999999999999999999999999999999887642 1222233322 01467899999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.. .++.|+++++...+.+. ++. ......+.....++.+|+++|..
T Consensus 104 ~~-------------~~~~L~~~l~~~~~~~v----~~~-~~~~~~~~~~~~~~~~i~~t~~~----------------- 148 (324)
T 1hqc_A 104 RQ-------------AEEHLYPAMEDFVMDIV----IGQ-GPAARTIRLELPRFTLIGATTRP----------------- 148 (324)
T ss_dssp HH-------------HHHHHHHHHHHSEEEEC----CSS-SSSCCCEEEECCCCEEEEEESCC-----------------
T ss_pred cc-------------hHHHHHHHHHhhhhHHh----ccc-cccccccccCCCCEEEEEeCCCc-----------------
Confidence 54 68999999996655543 111 11112344455678888877621
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
..+.++|++|++.++.|.+++.+++..++.... ..
T Consensus 149 ---------------------------------~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~-----------~~- 183 (324)
T 1hqc_A 149 ---------------------------------GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDA-----------RL- 183 (324)
T ss_dssp ---------------------------------SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH-----------HT-
T ss_pred ---------------------------------ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHH-----------Hh-
Confidence 126778999998889999999999888876421 11
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
..+.+++++++.|++++ .+..|.++++++.+.
T Consensus 184 -~~~~~~~~~~~~l~~~~---~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 184 -LGVRITEEAALEIGRRS---RGTMRVAKRLFRRVR 215 (324)
T ss_dssp -TTCCCCHHHHHHHHHHS---CSCHHHHHHHHHHHT
T ss_pred -cCCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHH
Confidence 23468999999999974 456899988887654
No 39
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.68 E-value=3.2e-16 Score=166.60 Aligned_cols=171 Identities=26% Similarity=0.360 Sum_probs=118.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhhh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
.++||+||||||||++|+++|+.++.+|+.+++.... ...+...+..+........++|||||||+.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~---------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG---------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS 121 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH
Confidence 5899999999999999999999999999999875432 1233444444332223456799999999998765
Q ss_pred ccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCcCc
Q 038067 244 ESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGFGA 323 (510)
Q Consensus 244 ~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf~~ 323 (510)
.|+.|++.+|.+ .++||++++..
T Consensus 122 -------------~q~~LL~~le~~-------------------------~v~lI~att~n------------------- 144 (447)
T 3pvs_A 122 -------------QQDAFLPHIEDG-------------------------TITFIGATTEN------------------- 144 (447)
T ss_dssp ----------------CCHHHHHTT-------------------------SCEEEEEESSC-------------------
T ss_pred -------------HHHHHHHHHhcC-------------------------ceEEEecCCCC-------------------
Confidence 588999999832 13344433200
Q ss_pred ccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCc
Q 038067 324 PVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNV 403 (510)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~ 403 (510)
+ ...+.++|++|+. ++.|.+++.+++..++...+ .++.. ...+.
T Consensus 145 -------------------------~----~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l----~~~~~--~~~~~ 188 (447)
T 3pvs_A 145 -------------------------P----SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAM----EDKTR--GYGGQ 188 (447)
T ss_dssp -------------------------G----GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHH----HCTTT--SSTTS
T ss_pred -------------------------c----ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHH----HHHhh--hhccc
Confidence 0 1237789999997 45799999999999997532 11100 01125
Q ss_pred eeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 404 KLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 404 ~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
.+.+++++++.|++.+ .+++|.+.++++.++..
T Consensus 189 ~~~i~~~al~~L~~~~---~Gd~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 189 DIVLPDETRRAIAELV---NGDARRALNTLEMMADM 221 (447)
T ss_dssp SEECCHHHHHHHHHHH---CSCHHHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHC---CCCHHHHHHHHHHHHHh
Confidence 6789999999999984 67799999999987753
No 40
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.67 E-value=4.1e-16 Score=167.53 Aligned_cols=189 Identities=23% Similarity=0.355 Sum_probs=135.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.||+.++|+++.. .|+|+. .+.+..+|..+ ....++||||||||.+.
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~-~~~g~~-~~~~~~~f~~A----~~~~p~iLfLDEId~l~ 310 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGES-ESNLRKAFEEA----EKNAPAIIFIDELDAIA 310 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT-SCTTHH-HHHHHHHHHHH----HHTCSEEEEEESHHHHC
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh-hhcchh-HHHHHHHHHHH----HhcCCcEEEecchhhhc
Confidence 5678999999999999999999999999999999999874 477765 45666676654 34567899999999998
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+... .......+++.|+.+|++.. ...++++|+++|..+
T Consensus 311 ~~~~~~--~~~~~~~~~~~LL~~ld~~~---------------------~~~~v~vIaaTn~~~---------------- 351 (489)
T 3hu3_A 311 PKREKT--HGEVERRIVSQLLTLMDGLK---------------------QRAHVIVMAATNRPN---------------- 351 (489)
T ss_dssp BCTTSC--CCHHHHHHHHHHHHHHHHSC---------------------TTSCEEEEEEESCGG----------------
T ss_pred cccccc--cchHHHHHHHHHHHHhhccc---------------------cCCceEEEEecCCcc----------------
Confidence 654211 11122368999999998421 123566777666210
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.+.|++++ ||+..+.|..++.++..+|++..+
T Consensus 352 ----------------------------------~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~------------ 385 (489)
T 3hu3_A 352 ----------------------------------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT------------ 385 (489)
T ss_dssp ----------------------------------GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT------------
T ss_pred ----------------------------------ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH------------
Confidence 14556666 999999999999999999987421
Q ss_pred cCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 400 MNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 400 ~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
....+. .+..+..++.. ..++..+.|..++......++.+..
T Consensus 386 -~~~~l~-~~~~l~~la~~--t~g~s~~dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 386 -KNMKLA-DDVDLEQVANE--THGHVGADLAALCSEAALQAIRKKM 427 (489)
T ss_dssp -TTSCBC-TTCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred -hcCCCc-chhhHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 122222 22235667764 4466689999999998888877654
No 41
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=2.3e-16 Score=160.37 Aligned_cols=231 Identities=19% Similarity=0.190 Sum_probs=145.6
Q ss_pred hHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCCC
Q 038067 75 PKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNVE 154 (510)
Q Consensus 75 ~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 154 (510)
...+...+.+.++||+.+++. +..++.
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~---------------l~~~l~-------------------------------------- 44 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINR---------------LLIGIC-------------------------------------- 44 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHH---------------HHHHHH--------------------------------------
T ss_pred HHHHHHHhccceeCcHHHHHH---------------HHHHHH--------------------------------------
Confidence 456777788889999999988 554442
Q ss_pred cchhhhccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc-cccccccchhhHHHHHHHhhchhHHHhcCcEEE
Q 038067 155 NDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT-QAGYVGEDAESVLYKLLAAADFDVEAAQRGIVY 233 (510)
Q Consensus 155 ~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~-~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~ 233 (510)
.+.++||+||||||||++|+++|+.++.++..++++... ...+.|..........+...++ .-..+|||
T Consensus 45 -------~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g---~l~~~vl~ 114 (331)
T 2r44_A 45 -------TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKG---PVFSNFIL 114 (331)
T ss_dssp -------HTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEEC---TTCSSEEE
T ss_pred -------cCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccC---cccccEEE
Confidence 235899999999999999999999999999999885221 1111221100000000000000 00237999
Q ss_pred EcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhh
Q 038067 234 IDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISER 313 (510)
Q Consensus 234 iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~ 313 (510)
|||++++... +++.|+++|+.+.+++. |.. .-...++++|+|.|..+
T Consensus 115 iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~----g~~--------~~~~~~~~viat~np~~-------- 161 (331)
T 2r44_A 115 ADEVNRSPAK-------------VQSALLECMQEKQVTIG----DTT--------YPLDNPFLVLATQNPVE-------- 161 (331)
T ss_dssp EETGGGSCHH-------------HHHHHHHHHHHSEEEET----TEE--------EECCSSCEEEEEECTTC--------
T ss_pred EEccccCCHH-------------HHHHHHHHHhcCceeeC----CEE--------EECCCCEEEEEecCCCc--------
Confidence 9999998655 79999999997666542 111 11223455666555210
Q ss_pred cccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHH----
Q 038067 314 RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNA---- 389 (510)
Q Consensus 314 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~---- 389 (510)
+ .-.+.+.|+|++||+..+.+.+++.++..+|++.....
T Consensus 162 -------~------------------------------~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~ 204 (331)
T 2r44_A 162 -------Q------------------------------EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNY 204 (331)
T ss_dssp -------C------------------------------SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCC
T ss_pred -------c------------------------------cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcch
Confidence 0 00123788999999988899999999999999763211
Q ss_pred ---------HHHHHHHHHhcCCceeeeCHHHHHHHHHhhC-----------------CCCCChhHHHHHHHHHHHHHHh
Q 038067 390 ---------LGRQYKKMFSMNNVKLHFTDDALRLIAKKAM-----------------AKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 390 ---------l~~~~~~~~~~~~~~l~is~~al~~La~~~~-----------------~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
-+...+.. ...+.+++++++++++... ....+.|.+.++++..-..+..
T Consensus 205 ~~~~~~~~~~i~~~~~~----~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l 279 (331)
T 2r44_A 205 QVQKIVSKNDVLEIRNE----INKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF 279 (331)
T ss_dssp CCCCCSCHHHHHHHHHH----HHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH
T ss_pred hccccCCHHHHHHHHHH----hccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH
Confidence 01111111 1246789999999987542 1133689998888866554444
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.67 E-value=1.6e-15 Score=155.85 Aligned_cols=189 Identities=22% Similarity=0.279 Sum_probs=123.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccccc-------------------------------------
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQA------------------------------------- 202 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~~~------------------------------------- 202 (510)
++.++||+||||||||++|+++|+.++ .|++.+++..+...
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~ 148 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVIN 148 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhh
Confidence 447899999999999999999999996 48888887664321
Q ss_pred -----------cccccchhhHHHHHHHhhchhHHH-----hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 203 -----------GYVGEDAESVLYKLLAAADFDVEA-----AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 203 -----------gy~G~~~~~~l~~l~~~~~~~~~~-----~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
++.|.. ...++..+......... ..++||||||+|.+... .++.|++.++
T Consensus 149 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~-------------~~~~L~~~le 214 (368)
T 3uk6_A 149 SRTQGFLALFSGDTGEI-KSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIE-------------SFSFLNRALE 214 (368)
T ss_dssp C----CCSCC--------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHH-------------HHHHHHHHTT
T ss_pred cccccchhhccCccccc-HHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChH-------------HHHHHHHHhh
Confidence 011110 11222333222111111 11479999999998755 7999999997
Q ss_pred CceeeeccCCCCCCCCCCCCcEEEEcCCc-eeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhh
Q 038067 267 GTVVNVPIPDNGPRKHPRGDNIPIDTKDI-LFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLE 345 (510)
Q Consensus 267 g~~~~i~~~~~g~~~~~~~~~i~i~tsni-lfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~ 345 (510)
.. ....+++.+.+- .+|.+++..
T Consensus 215 ~~---------------~~~~~ii~t~~~~~~i~~t~~~----------------------------------------- 238 (368)
T 3uk6_A 215 SD---------------MAPVLIMATNRGITRIRGTSYQ----------------------------------------- 238 (368)
T ss_dssp CT---------------TCCEEEEEESCSEEECBTSSCE-----------------------------------------
T ss_pred Cc---------------CCCeeeeecccceeeeeccCCC-----------------------------------------
Confidence 31 112234444433 223222100
Q ss_pred ccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCC
Q 038067 346 SVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTG 425 (510)
Q Consensus 346 ~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~g 425 (510)
+ ...+.|.|++|+.. +.|++++.+++.+|+...+ ... .+.++++++++|++.++. ++
T Consensus 239 ---~----~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~-----------~~~--~~~~~~~~l~~l~~~~~~--G~ 295 (368)
T 3uk6_A 239 ---S----PHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRC-----------EEE--DVEMSEDAYTVLTRIGLE--TS 295 (368)
T ss_dssp ---E----ETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHH-----------HHT--TCCBCHHHHHHHHHHHHH--SC
T ss_pred ---C----cccCCHHHHhhccE-EEecCCCHHHHHHHHHHHH-----------HHc--CCCCCHHHHHHHHHHhcC--CC
Confidence 0 02377899999987 6999999999999997521 112 345899999999998632 67
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 038067 426 ARGLRALLENILTEAMFE 443 (510)
Q Consensus 426 aR~L~~~ie~~l~~~l~~ 443 (510)
.|.+.+++++.+..+..+
T Consensus 296 ~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 296 LRYAIQLITAASLVCRKR 313 (368)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999988766543
No 43
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=5.9e-17 Score=178.15 Aligned_cols=218 Identities=20% Similarity=0.199 Sum_probs=126.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
...|+||+||||||||++|+++|+.++.++..... .....++.+..........+...++.+..+.++|+|||||+++.
T Consensus 326 ~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~-~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~ 404 (595)
T 3f9v_A 326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK-GSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMR 404 (595)
T ss_dssp CSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-CSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCC
T ss_pred CCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-ccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCC
Confidence 44589999999999999999999998765443211 11112222222111111111122344556778999999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC-
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG- 320 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g- 320 (510)
+. +++.|+++||.+.+++. ..|.... ...++.+|+|+|... |
T Consensus 405 ~~-------------~q~~Ll~~le~~~i~i~--~~g~~~~--------~~~~~~vIaatNp~~--------------G~ 447 (595)
T 3f9v_A 405 DE-------------DRVAIHEAMEQQTVSIA--KAGIVAK--------LNARAAVIAAGNPKF--------------GR 447 (595)
T ss_dssp SH-------------HHHHHHHHHHSSSEEEE--SSSSEEE--------ECCCCEEEEEECCTT--------------CC
T ss_pred Hh-------------HhhhhHHHHhCCEEEEe--cCCcEEE--------ecCceEEEEEcCCcC--------------Cc
Confidence 65 79999999998777764 3343222 234556666666210 1
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhH------------
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKN------------ 388 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~------------ 388 (510)
|... . ...+ ...+.++|++|||.++.+.++..++...|++..+.
T Consensus 448 ~~~~-~---------------~~~~--------ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~ 503 (595)
T 3f9v_A 448 YISE-R---------------PVSD--------NINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIID 503 (595)
T ss_dssp SCTT-S---------------CSCT--------TTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTC
T ss_pred cCcc-c---------------Cchh--------ccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCC
Confidence 1000 0 0000 11388899999998777777776654444432111
Q ss_pred -HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhC------------CCCCChhHHHHHHHHHHHHHHh
Q 038067 389 -ALGRQYKKMFSMNNVKLHFTDDALRLIAKKAM------------AKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 389 -~l~~~~~~~~~~~~~~l~is~~al~~La~~~~------------~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
..+++|.... ...+...+++++.+.|.+... ....++|.|.++++-.-..+..
T Consensus 504 ~~~l~~~i~~a-r~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l 569 (595)
T 3f9v_A 504 IDTLRKYIAYA-RKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKM 569 (595)
T ss_dssp CTTTHHHHHHH-HHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 1122222211 111233678888888888632 2456789999999865544443
No 44
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.61 E-value=6.5e-15 Score=158.28 Aligned_cols=187 Identities=25% Similarity=0.344 Sum_probs=123.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.+++|+||||||||+||+++|..++.+++.++++++... |+|.. ...+..+|+.+. ...++|+||||||.+.
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~-~~g~~-~~~v~~lfq~a~----~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVG-AARVRDLFETAK----RHAPCIVFIDEIDAVG 136 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS-CTTHH-HHHHHHHTTTSS----SSSSCEEEEECGGGTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh-hhhhH-HHHHHHHHHHHH----hcCCCEEEEehHHHHH
Confidence 34569999999999999999999999999999999998753 66654 344556665542 2346899999999987
Q ss_pred hhccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+.... ......+..++.|+..|+|... ...+++|+++|..+
T Consensus 137 ~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~---------------------~~~viviAatn~p~--------------- 180 (499)
T 2dhr_A 137 RKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------------------DTAIVVMAATNRPD--------------- 180 (499)
T ss_dssp CCSSSSTTTSSHHHHHHHHHHHHHGGGCCS---------------------SCCCEEEECCSCGG---------------
T ss_pred HhhccCcCCCcHHHHHHHHHHHHHhccccc---------------------CccEEEEEecCChh---------------
Confidence 5432111 1111123466778888874211 12355666655210
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|++++ ||+..|.++.++.++..+|++...
T Consensus 181 -----------------------------------~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~----------- 214 (499)
T 2dhr_A 181 -----------------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA----------- 214 (499)
T ss_dssp -----------------------------------GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT-----------
T ss_pred -----------------------------------hcCcccccccccceEEecCCCCHHHHHHHHHHHH-----------
Confidence 14556665 899999999999999999986421
Q ss_pred hcCCceeeeCHHH-HHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 399 SMNNVKLHFTDDA-LRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 399 ~~~~~~l~is~~a-l~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
.+ +.+++++ +..|+.. .+++..|.|++++++....+..
T Consensus 215 --~~--~~l~~dv~l~~lA~~--t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 215 --RG--KPLAEDVDLALLAKR--TPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp --SS--SCCCCSSTTHHHHTT--SCSCCHHHHHHHHHHHHHHHTT
T ss_pred --hc--CCCChHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHH
Confidence 12 2334433 5666653 2333459999999987765543
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.60 E-value=7e-15 Score=145.43 Aligned_cols=177 Identities=25% Similarity=0.324 Sum_probs=115.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchh---hHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAE---SVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~---~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
++.++||+||||||||++|+++|+.++.|++.+++.+. ++|.... ..+..++..+ ....++||||||||
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~g~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid 134 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MIGFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIE 134 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CTTCCHHHHHHHHHHHHHHH----HTSSEEEEEECCHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hcCCchHHHHHHHHHHHHHH----HhcCCcEEEEEChh
Confidence 55789999999999999999999999999999988753 3343321 2333444332 23457899999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+...... +.. ....+++.|+.++++.. . ...++++|+|+|..+
T Consensus 135 ~l~~~~~~--~~~-~~~~~l~~L~~~~~~~~------------~--------~~~~~~ii~ttn~~~------------- 178 (272)
T 1d2n_A 135 RLLDYVPI--GPR-FSNLVLQALLVLLKKAP------------P--------QGRKLLIIGTTSRKD------------- 178 (272)
T ss_dssp HHTTCBTT--TTB-CCHHHHHHHHHHTTCCC------------S--------TTCEEEEEEEESCHH-------------
T ss_pred hhhccCCC--Chh-HHHHHHHHHHHHhcCcc------------C--------CCCCEEEEEecCChh-------------
Confidence 98643221 111 12346777777775210 0 112355666655210
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCch-hhhcccCceEecCCCCH-HHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIP-EFIGRFPILVSLSALNE-DQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~P-efl~R~~~iv~f~~Ls~-eel~~Il~~~~~~l~~~~~~ 396 (510)
. +.+ .+.+||+..+.+++++. +++.+++..
T Consensus 179 --------------------------------~-----l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----------- 210 (272)
T 1d2n_A 179 --------------------------------V-----LQEMEMLNAFSTTIHVPNIATGEQLLEALEL----------- 210 (272)
T ss_dssp --------------------------------H-----HHHTTCTTTSSEEEECCCEEEHHHHHHHHHH-----------
T ss_pred --------------------------------h-----cchhhhhcccceEEcCCCccHHHHHHHHHHh-----------
Confidence 0 112 45679999999999987 777666642
Q ss_pred HHhcCCceeeeCHHHHHHHHHhh--CCCCCChhHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKA--MAKNTGARGLRALLENIL 437 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~--~~~~~gaR~L~~~ie~~l 437 (510)
. ..++++++..|++.+ +.+..++|.+.++++...
T Consensus 211 ---~----~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 211 ---L----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 246 (272)
T ss_dssp ---H----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHT
T ss_pred ---c----CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Confidence 0 136889999999875 223447899888888643
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.59 E-value=1.3e-14 Score=146.84 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=119.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+..+|++||||||||++|+++|+.++.+++.+++++... ......+.......+ ....+.||||||+|.+.
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~-----~~i~~~~~~~~~~~~---~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKI-----DFVRGPLTNFASAAS---FDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCH-----HHHHTHHHHHHHBCC---CSSCEEEEEEESCCCGG
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHHHHHHHhhcc---cCCCCeEEEEECCcccC
Confidence 3456788899999999999999999999999999876421 011111222111111 01256899999999987
Q ss_pred -hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 -KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 -~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
.. .++.|++.++. ...++.||+++|..
T Consensus 119 ~~~-------------~~~~L~~~le~-----------------------~~~~~~iI~~~n~~---------------- 146 (324)
T 3u61_B 119 LAE-------------SQRHLRSFMEA-----------------------YSSNCSIIITANNI---------------- 146 (324)
T ss_dssp GHH-------------HHHHHHHHHHH-----------------------HGGGCEEEEEESSG----------------
T ss_pred cHH-------------HHHHHHHHHHh-----------------------CCCCcEEEEEeCCc----------------
Confidence 44 69999999982 12345667766611
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhc
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSM 400 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~ 400 (510)
..+.|++.+|+. ++.|.+++.+++.+|+...+..+ ...+..
T Consensus 147 ----------------------------------~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l----~~~~~~ 187 (324)
T 3u61_B 147 ----------------------------------DGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRL----TEICKH 187 (324)
T ss_dssp ----------------------------------GGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHH----HHHHHH
T ss_pred ----------------------------------cccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHH----HHHHHH
Confidence 026788999996 57999999999988887543333 333333
Q ss_pred CCceeeeCH-HHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 401 NNVKLHFTD-DALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 401 ~~~~l~is~-~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
.+ +.+++ +++++|++.+ +++.|.+.+.++...
T Consensus 188 ~~--~~~~~~~~~~~l~~~~---~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 188 EG--IAIADMKVVAALVKKN---FPDFRKTIGELDSYS 220 (324)
T ss_dssp HT--CCBSCHHHHHHHHHHT---CSCTTHHHHHHHHHG
T ss_pred cC--CCCCcHHHHHHHHHhC---CCCHHHHHHHHHHHh
Confidence 34 45777 9999999874 567899888888765
No 47
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=144.50 Aligned_cols=193 Identities=23% Similarity=0.305 Sum_probs=127.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.+++|+||||||||++++++|..++.+++.+++.++... |.|.. ...+..+++.+ ....++++|+||++.+.
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~-~~~~~-~~~i~~vf~~a----~~~~p~i~~~Deid~~~ 116 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVGES-ERAVRQVFQRA----KNSAPCVIFFDEVDALC 116 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS-TTHHH-HHHHHHHHHHH----HHTCSEEEEEETCTTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh-hhhHH-HHHHHHHHHHH----HhcCCCeEeeehhhhhh
Confidence 34569999999999999999999999999999999888643 55553 45566666553 23467899999999876
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+.... .. ....+.+.++..|+|+... ..+++++++|..
T Consensus 117 ~~r~~~~-~~-~~~~~~~~~l~~Lsgg~~~---------------------~~~i~ia~tn~p----------------- 156 (274)
T 2x8a_A 117 PRRSDRE-TG-ASVRVVNQLLTEMDGLEAR---------------------QQVFIMAATNRP----------------- 156 (274)
T ss_dssp C-----------CTTHHHHHHHHHHTCCST---------------------TCEEEEEEESCG-----------------
T ss_pred cccCCCc-ch-HHHHHHHHHHHhhhccccc---------------------CCEEEEeecCCh-----------------
Confidence 4332111 11 1124788889989753210 123444444411
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
.-+.|+++. |||..|.++.++.++..+|++..+ .
T Consensus 157 ---------------------------------~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~-----------~ 192 (274)
T 2x8a_A 157 ---------------------------------DIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT-----------K 192 (274)
T ss_dssp ---------------------------------GGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT-----------T
T ss_pred ---------------------------------hhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH-----------h
Confidence 015677876 999999999999999999997411 1
Q ss_pred cCCceeee-CHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCc
Q 038067 400 MNNVKLHF-TDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIP 445 (510)
Q Consensus 400 ~~~~~l~i-s~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~ 445 (510)
.+....+ .+-.++.|+......++.+..|..++++....++.+..
T Consensus 193 -~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 193 -NGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp -TTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred -cccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 12235666664333467788999999998888876543
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.58 E-value=5.5e-16 Score=152.64 Aligned_cols=187 Identities=27% Similarity=0.385 Sum_probs=115.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
.+.++||+||||||||++|+++|+.++.|++.++++++... |.|... ..+..++..+ ....++||||||+|.+.
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~~~~-~~~~~~~~~a----~~~~~~vl~iDEid~l~ 116 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETA----KKQAPSIIFIDEIDAIG 116 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS-CSSSCS-SSSSTTHHHH----HHSCSCEEEESCGGGTT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh-hcchHH-HHHHHHHHHH----HhcCCeEEEEeChhhhc
Confidence 45679999999999999999999999999999999988743 555542 2233333332 22356899999999997
Q ss_pred hhccCCC--CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 242 KAESRNN--GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 242 ~~~~~~~--~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
..+..+. ..+.....+++.|+..+++. +. ...++++|+|+|..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~-----------~~~~v~vi~ttn~~~-------------- 162 (268)
T 2r62_A 117 KSRAAGGVVSGNDEREQTLNQLLAEMDGF---------GS-----------ENAPVIVLAATNRPE-------------- 162 (268)
T ss_dssp C----------CCCSCSSTTTTTTTTTCS---------SC-----------SCSCCEEEECBSCCT--------------
T ss_pred ccccccccCCCchhHHHHHHHHHHHhhCc---------cc-----------CCCCEEEEEecCCch--------------
Confidence 6532111 00111112466677766521 00 123466777666210
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKM 397 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~ 397 (510)
.+.|.+++ ||+..+.|.+++.++..+|++..+
T Consensus 163 ------------------------------------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~---------- 196 (268)
T 2r62_A 163 ------------------------------------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI---------- 196 (268)
T ss_dssp ------------------------------------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT----------
T ss_pred ------------------------------------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH----------
Confidence 14556666 999999999999999999986421
Q ss_pred HhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHH
Q 038067 398 FSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEA 440 (510)
Q Consensus 398 ~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~ 440 (510)
. +..+. ++..++.|++. ..++..|.|++++++....+
T Consensus 197 -~--~~~~~-~~~~~~~la~~--~~g~~g~dl~~l~~~a~~~a 233 (268)
T 2r62_A 197 -K--GVKLA-NDVNLQEVAKL--TAGLAGADLANIINEAALLA 233 (268)
T ss_dssp -S--SSCCC-SSCCTTTTTSS--SCSSCHHHHHHHHHHHHHTT
T ss_pred -h--cCCCC-CccCHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 1 11111 22224455554 23444688888888766443
No 49
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.58 E-value=3.6e-14 Score=152.56 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=141.9
Q ss_pred hHHHHhhhccccccchhhhhccchhhhhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhhcccccccccccCCccCCCCCCC
Q 038067 75 PKEICKGLDEFVIGQERAKKSHIFCILVDMLVYVIGACCAVYNHYKRIYHSSLQKELVSDHLYVDSILGSGVKSGNCNVE 154 (510)
Q Consensus 75 ~~el~~~L~~~ViGQ~~ak~~~~~~~~~~~~~~~~~l~~av~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 154 (510)
...+.+.|.+.|+||+.+++. +..++.
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~---------------l~~al~-------------------------------------- 39 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRL---------------CLLAAL-------------------------------------- 39 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHH---------------HHHHHH--------------------------------------
T ss_pred HHHHHHHHHhhhHHHHHHHHH---------------HHHHHh--------------------------------------
Confidence 356888899999999999998 555543
Q ss_pred cchhhhccCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccccccccccchhhHH--HHHHHhh-chhHHHhcC
Q 038067 155 NDEIVELEKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGEDAESVL--YKLLAAA-DFDVEAAQR 229 (510)
Q Consensus 155 ~~~~~~~~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~~~gy~G~~~~~~l--~~l~~~~-~~~~~~~~~ 229 (510)
.+.++||+||||||||++|+++|+.++ .+|....+.-.+...++|....... ...+... .+. ...+
T Consensus 40 -------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~ 110 (500)
T 3nbx_X 40 -------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEA 110 (500)
T ss_dssp -------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTS--GGGC
T ss_pred -------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcc
Confidence 446899999999999999999999884 4666666542222222231100000 1111111 000 1145
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
+|||||||+++.+. +++.|+.+|+.+.+++ .|.. ......++|+++|..
T Consensus 111 ~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i----~G~~---------~~~~~~~iI~ATN~l----- 159 (500)
T 3nbx_X 111 EIVFLDEIWKAGPA-------------ILNTLLTAINERQFRN----GAHV---------EKIPMRLLVAASNEL----- 159 (500)
T ss_dssp SEEEEESGGGCCHH-------------HHHHHHHHHHSSEEEC----SSSE---------EECCCCEEEEEESSC-----
T ss_pred eeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccC----CCCc---------CCcchhhhhhccccC-----
Confidence 79999999987654 8999999999777663 2211 122222335554410
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCH-HHHHHHHhchhH
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNE-DQLVQVLMEPKN 388 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~-eel~~Il~~~~~ 388 (510)
|+ ...+.+++++||...+.+++++. ++...|+.....
T Consensus 160 ---------------------------------------pe---~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 160 ---------------------------------------PE---ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp ---------------------------------------CC---TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred ---------------------------------------CC---ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 00 01256799999988899999987 778888876431
Q ss_pred --------------HHHHHHHHHHhcCCceeeeCHHHHHHHHHhhC-------CCCCChhHHHHHHHHHHHHHHh
Q 038067 389 --------------ALGRQYKKMFSMNNVKLHFTDDALRLIAKKAM-------AKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 389 --------------~l~~~~~~~~~~~~~~l~is~~al~~La~~~~-------~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
.-+..++... ..+.+++++++++++... ....+.|.+..++...-..+..
T Consensus 198 ~~~~~~~~~~~~~~e~l~~~~~~~----~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l 268 (500)
T 3nbx_X 198 ENDNPVPDALQVTDEEYERWQKEI----GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFF 268 (500)
T ss_dssp TTSCCSCTTTSBCHHHHHHHHHHH----TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccceecHHHHHHHHhcC----CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhh
Confidence 1112222211 246689999999987651 2345689988888765444444
No 50
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.56 E-value=4.9e-14 Score=137.78 Aligned_cols=187 Identities=26% Similarity=0.351 Sum_probs=118.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~ 242 (510)
+.+++|+||||||||+++++++..++.+++.+++.++... +.+.. ...+..+++.+. ...++++++||+|.+..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~~----~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVG-AARVRDLFETAK----RHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS-CTTHH-HHHHHHHHHHHT----TSSSEEEEEETHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH-HhhHH-HHHHHHHHHHHH----hcCCeEEEehhhhhhhc
Confidence 4569999999999999999999999999999998877543 34432 334455555431 12468999999999875
Q ss_pred hccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 243 AESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 243 ~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.+.... .........++.|+..|+|+.. . ..++++++++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-------------~--------~~~i~~a~t~~p----------------- 164 (254)
T 1ixz_A 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------D--------TAIVVMAATNRP----------------- 164 (254)
T ss_dssp ---------CHHHHHHHHHHHHHHHTCCT-------------T--------CCEEEEEEESCG-----------------
T ss_pred ccCccccccchHHHHHHHHHHHHHhCCCC-------------C--------CCEEEEEccCCc-----------------
Confidence 432110 0111122466778888874311 0 123344443311
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
..+.|++++ ||+..+.++.++.++..+|++...
T Consensus 165 ---------------------------------~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~------------ 199 (254)
T 1ixz_A 165 ---------------------------------DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA------------ 199 (254)
T ss_dssp ---------------------------------GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH------------
T ss_pred ---------------------------------hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH------------
Confidence 015566766 899999999999999999986311
Q ss_pred cCCceeeeCHHH-HHHHHHhhCCCCCChhHHHHHHHHHHHHHHhc
Q 038067 400 MNNVKLHFTDDA-LRLIAKKAMAKNTGARGLRALLENILTEAMFE 443 (510)
Q Consensus 400 ~~~~~l~is~~a-l~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~ 443 (510)
.+. .+++++ +..|+.. ..++.+|.|++++++....+..+
T Consensus 200 -~~~--~~~~~~~~~~la~~--~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 200 -RGK--PLAEDVDLALLAKR--TPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp -TTS--CBCTTCCHHHHHHT--CTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -cCC--CCCcccCHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 122 233333 6677774 23444699999999888776653
No 51
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.6e-14 Score=146.80 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=125.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccccc---------ccccc-----chhhHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQA---------GYVGE-----DAESVLYKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~~---------gy~G~-----~~~~~l~~l~ 217 (510)
.+.+++|+||||||||++++.+++.+ ...++.++|..+..+ .+.|+ .....+...+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 56799999999999999999999998 245788998876532 01121 1123344444
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
..... ......||+|||+|.+. .. .++..|+++.+ ...+++++
T Consensus 124 ~~~~~--~~~~~~ii~lDE~d~l~-~q-----------~~L~~l~~~~~-----------------------~~~s~~~v 166 (318)
T 3te6_A 124 TNVPK--AKKRKTLILIQNPENLL-SE-----------KILQYFEKWIS-----------------------SKNSKLSI 166 (318)
T ss_dssp HHSCG--GGSCEEEEEEECCSSSC-CT-----------HHHHHHHHHHH-----------------------CSSCCEEE
T ss_pred HHhhh--ccCCceEEEEecHHHhh-cc-----------hHHHHHHhccc-----------------------ccCCcEEE
Confidence 43210 12345799999999987 20 24444444332 12356777
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC-ceEecCCCCH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP-ILVSLSALNE 376 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~-~iv~f~~Ls~ 376 (510)
|+.+|..++ + ...+.|.+.+|+. .++.|.|++.
T Consensus 167 I~i~n~~d~----------------------------~------------------~~~L~~~v~SR~~~~~i~F~pYt~ 200 (318)
T 3te6_A 167 ICVGGHNVT----------------------------I------------------REQINIMPSLKAHFTEIKLNKVDK 200 (318)
T ss_dssp EEECCSSCC----------------------------C------------------HHHHHTCHHHHTTEEEEECCCCCH
T ss_pred EEEecCccc----------------------------c------------------hhhcchhhhccCCceEEEeCCCCH
Confidence 777772211 0 0113456778887 5789999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHH-------------------------hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHH
Q 038067 377 DQLVQVLMEPKNALGRQYKKMF-------------------------SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRA 431 (510)
Q Consensus 377 eel~~Il~~~~~~l~~~~~~~~-------------------------~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~ 431 (510)
+++.+|++..+..+.+. .| ......+.++++|++.+|++.....+.+|..-.
T Consensus 201 ~el~~Il~~Rl~~~~~~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ 277 (318)
T 3te6_A 201 NELQQMIITRLKSLLKP---FHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFK 277 (318)
T ss_dssp HHHHHHHHHHHHHHCCC---EEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHHhhhcc---ccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHH
Confidence 99999998744332110 00 000123468999999999976555778999888
Q ss_pred HHHHHHHHHHhc
Q 038067 432 LLENILTEAMFE 443 (510)
Q Consensus 432 ~ie~~l~~~l~~ 443 (510)
++++.+.-+-.+
T Consensus 278 ilr~A~~~ae~e 289 (318)
T 3te6_A 278 ICEAAVEISKKD 289 (318)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877766554
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.55 E-value=4.8e-14 Score=132.47 Aligned_cols=164 Identities=22% Similarity=0.297 Sum_probs=111.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhch--hHHHhcCcEEEEcc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADF--DVEAAQRGIVYIDE 236 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~--~~~~~~~~Vl~iDE 236 (510)
.+++|+||||||||++|+.+++.+ ..+++.++++..... ..+...+..... ......+.||+|||
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vliiDe 110 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--------DVVRHKIKEFARTAPIGGAPFKIIFLDE 110 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH--------HHHHHHHHHHHTSCCSTTCSCEEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh--------HHHHHHHHHHhcccCCCccCceEEEEeC
Confidence 469999999999999999999986 356777877654321 111222111100 01124578999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
++.+... .++.|+++++. . ..++.+|++++..
T Consensus 111 ~~~l~~~-------------~~~~l~~~l~~---------~--------------~~~~~~i~~~~~~------------ 142 (226)
T 2chg_A 111 ADALTAD-------------AQAALRRTMEM---------Y--------------SKSCRFILSCNYV------------ 142 (226)
T ss_dssp GGGSCHH-------------HHHHHHHHHHH---------T--------------TTTEEEEEEESCG------------
T ss_pred hhhcCHH-------------HHHHHHHHHHh---------c--------------CCCCeEEEEeCCh------------
Confidence 9998654 58889999972 0 1234555555411
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
..+.+.+.+|+. ++.|.+++.+++.+++.... .
T Consensus 143 --------------------------------------~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~----~---- 175 (226)
T 2chg_A 143 --------------------------------------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEIC----E---- 175 (226)
T ss_dssp --------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH----H----
T ss_pred --------------------------------------hhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHH----H----
Confidence 125678889998 77999999999988887421 1
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
..+ +.+++++++.|++.+ .++.|.+.+.+++...
T Consensus 176 ---~~~--~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~ 209 (226)
T 2chg_A 176 ---KEG--VKITEDGLEALIYIS---GGDFRKAINALQGAAA 209 (226)
T ss_dssp ---HHT--CCBCHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred ---HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 112 348899999999875 5678999998887664
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.55 E-value=1.6e-14 Score=146.51 Aligned_cols=173 Identities=15% Similarity=0.246 Sum_probs=114.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidk 239 (510)
..+++|+||||||||++|+++++.+ +.+++.+++.++... +.+......... +.. ....+.||||||++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-~~~-----~~~~~~vL~iDEi~~ 109 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHLKKGTINE-FRN-----MYKSVDLLLLDDVQF 109 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHHHHTCHHH-HHH-----HHHTCSEEEEECGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH-HHHHHHcCcHHH-HHH-----HhcCCCEEEEcCccc
Confidence 4689999999999999999999998 889999998876421 111110000111 110 113478999999999
Q ss_pred hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCC
Q 038067 240 IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSI 319 (510)
Q Consensus 240 l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~ 319 (510)
+.... ..++.|+.+++... ..+..+|++++..
T Consensus 110 l~~~~-----------~~~~~l~~~l~~~~----------------------~~~~~iii~~~~~--------------- 141 (324)
T 1l8q_A 110 LSGKE-----------RTQIEFFHIFNTLY----------------------LLEKQIILASDRH--------------- 141 (324)
T ss_dssp GTTCH-----------HHHHHHHHHHHHHH----------------------HTTCEEEEEESSC---------------
T ss_pred ccCCh-----------HHHHHHHHHHHHHH----------------------HCCCeEEEEecCC---------------
Confidence 87431 15777777765210 0112233333300
Q ss_pred CcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHHH
Q 038067 320 GFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKKM 397 (510)
Q Consensus 320 gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~ 397 (510)
+.++ ..+.+.|++|++ .++.|+| +.+++.+|+...+
T Consensus 142 -----------------------------~~~l--~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~---------- 179 (324)
T 1l8q_A 142 -----------------------------PQKL--DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKL---------- 179 (324)
T ss_dssp -----------------------------GGGC--TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHH----------
T ss_pred -----------------------------hHHH--HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHH----------
Confidence 0000 126789999996 6789999 9999999987522
Q ss_pred HhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 398 FSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 398 ~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
... .+.++++++++|++.+ +++|.|.+++++++..
T Consensus 180 -~~~--~~~l~~~~l~~l~~~~----g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 180 -KEF--NLELRKEVIDYLLENT----KNVREIEGKIKLIKLK 214 (324)
T ss_dssp -HHT--TCCCCHHHHHHHHHHC----SSHHHHHHHHHHHHHH
T ss_pred -Hhc--CCCCCHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Confidence 112 3568999999999974 5689999999987765
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.54 E-value=1.1e-14 Score=130.95 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=60.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
...++||+||||||||++|+++++.. +.||+ ++|+.+... ......+ ..+.+++|||||||
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--------~~~~~~~-------~~a~~g~l~ldei~ 86 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--------PQLNDFI-------ALAQGGTLVLSHPE 86 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------SCHHHHH-------HHHTTSCEEEECGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------hhhhcHH-------HHcCCcEEEEcChH
Confidence 45689999999999999999999987 67999 999887643 1112222 33467899999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.+... +|..|+.+|+
T Consensus 87 ~l~~~-------------~q~~Ll~~l~ 101 (145)
T 3n70_A 87 HLTRE-------------QQYHLVQLQS 101 (145)
T ss_dssp GSCHH-------------HHHHHHHHHH
T ss_pred HCCHH-------------HHHHHHHHHh
Confidence 98765 7999999995
No 55
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.53 E-value=5.6e-14 Score=149.70 Aligned_cols=76 Identities=29% Similarity=0.368 Sum_probs=53.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidk 239 (510)
+++++||+||||||||++|+++|+.++ .+|+.++++++.. .|+|.. +. +..+|+.+.. .+...++||||||+|.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~ 137 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS-TEIKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTE 137 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC-SSSCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH-Hhhhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhh
Confidence 567899999999999999999999998 8999999998873 366654 22 5555554411 0123445555555555
Q ss_pred hh
Q 038067 240 IV 241 (510)
Q Consensus 240 l~ 241 (510)
+.
T Consensus 138 l~ 139 (456)
T 2c9o_A 138 LT 139 (456)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 56
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.53 E-value=7.4e-14 Score=138.69 Aligned_cols=186 Identities=25% Similarity=0.344 Sum_probs=115.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~ 242 (510)
+.+++|+||||||||+++++++..++.+++.+++.++... +.+.. ...+..+++.+ ....++++++||++.+..
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~-~~~~~-~~~i~~~~~~~----~~~~~~i~~iDeid~l~~ 146 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGVG-AARVRDLFETA----KRHAPCIVFIDEIDAVGR 146 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS-TTTHH-HHHHHHHHHHH----HTSCSEEEEEETHHHHHC
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH-HhhHH-HHHHHHHHHHH----HhcCCcEEehhhhHhhhc
Confidence 3459999999999999999999999999999998877543 33332 23344555443 123468999999999874
Q ss_pred hccCCC-CCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 243 AESRNN-GRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 243 ~~~~~~-~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
.+.... ..........+.++..|+|+.. . ..++++++++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-------------~--------~~~i~~a~t~~p----------------- 188 (278)
T 1iy2_A 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------D--------TAIVVMAATNRP----------------- 188 (278)
T ss_dssp C--------CHHHHHHHHHHHHHHTTCCT-------------T--------CCEEEEEEESCT-----------------
T ss_pred ccccccCCcchHHHHHHHHHHHHHhCCCC-------------C--------CCEEEEEecCCc-----------------
Confidence 322110 0011112345566666653210 0 123344443311
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHh
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFS 399 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~ 399 (510)
..+.|+++. ||+..+.|.+++.++..+|++...
T Consensus 189 ---------------------------------~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~------------ 223 (278)
T 1iy2_A 189 ---------------------------------DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA------------ 223 (278)
T ss_dssp ---------------------------------TSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH------------
T ss_pred ---------------------------------hhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH------------
Confidence 015567765 899999999999999999986311
Q ss_pred cCCceeeeCHHH-HHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 400 MNNVKLHFTDDA-LRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 400 ~~~~~l~is~~a-l~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
.+ +.+++++ +..|+.. + .++..|.|++++++....+..
T Consensus 224 -~~--~~~~~~~~~~~la~~-~-~G~~~~dl~~l~~~a~~~a~~ 262 (278)
T 1iy2_A 224 -RG--KPLAEDVDLALLAKR-T-PGFVGADLENLLNEAALLAAR 262 (278)
T ss_dssp -TT--SCBCTTCCHHHHHHT-C-TTCCHHHHHHHHHHHHHHHHH
T ss_pred -cc--CCCCcccCHHHHHHH-c-CCCCHHHHHHHHHHHHHHHHH
Confidence 12 2233333 6667764 2 333459999999988776654
No 57
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.52 E-value=1.9e-15 Score=171.62 Aligned_cols=190 Identities=24% Similarity=0.350 Sum_probs=130.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|+.++.+++.++++++.. .|+|+. +..+..+|+.+ ....++||||||||++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a----~~~~p~vl~iDEid~l~ 583 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGES-EANVREIFDKA----RQAAPCVLFFDELDSIA 583 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT-CCTTTS-SHHHHHHHHHH----HHHCSBCCCCSSHHHHC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh-hhcCcc-HHHHHHHHHHH----HhcCCeEEEEEChhhhh
Confidence 6678999999999999999999999999999999999874 488886 56677777765 34567899999999997
Q ss_pred hhccCCCCC-CCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCC
Q 038067 242 KAESRNNGR-DVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIG 320 (510)
Q Consensus 242 ~~~~~~~~~-~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~g 320 (510)
..+..+.+. ......+++.||..|++. ....++++|+|+|..+
T Consensus 584 ~~r~~~~~~~~~~~~~v~~~LL~~ld~~---------------------~~~~~v~vI~tTN~~~--------------- 627 (806)
T 1ypw_A 584 KARGGNIGDGGGAADRVINQILTEMDGM---------------------STKKNVFIIGATNRPD--------------- 627 (806)
T ss_dssp CTTTTCCSHHHHHHHHHHHHHHTTCC---------------------------CCBCCCCCBSCG---------------
T ss_pred hhccCCCCCcchhHHHHHHHHHHHHhcc---------------------cccCCeEEEEecCCcc---------------
Confidence 654321110 112346888888888741 1346788888888321
Q ss_pred cCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 321 FGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
.+.|+|++ ||+.+|.|+.++.++..+|++..+...
T Consensus 628 -----------------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------- 664 (806)
T 1ypw_A 628 -----------------------------------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------- 664 (806)
T ss_dssp -----------------------------------GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC--------
T ss_pred -----------------------------------cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC--------
Confidence 15677877 999999999999999999998643211
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcC
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEI 444 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~ 444 (510)
.+. .+..++.|++. ..++..+.|+.++......++.+.
T Consensus 665 -----~~~-~~~~l~~la~~--t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 665 -----PVA-KDVDLEFLAKM--TNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp ----------CCCCSCSCGG--GSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred -----CCC-cccCHHHHHHh--ccccCHHHHHHHHHHHHHHHHHHH
Confidence 000 01112233332 234456777777777777776654
No 58
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.4e-13 Score=138.23 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=111.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC-----CCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN-----VPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~-----~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+++|+||||||||++|+++++.+. .+++.+++++..... .....+.......+ +....+.||+|||++
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~vliiDe~~ 120 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN----VIREKVKEFARTKP--IGGASFKIIFLDEAD 120 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH----TTHHHHHHHHHSCC--GGGCSCEEEEEETGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH----HHHHHHHHHHhhCC--cCCCCCeEEEEeCCC
Confidence 4699999999999999999999873 347777776543110 01112222221111 112457899999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+... .++.|++.++.. ..++.||++++..
T Consensus 121 ~l~~~-------------~~~~L~~~le~~-----------------------~~~~~~i~~~~~~-------------- 150 (327)
T 1iqp_A 121 ALTQD-------------AQQALRRTMEMF-----------------------SSNVRFILSCNYS-------------- 150 (327)
T ss_dssp GSCHH-------------HHHHHHHHHHHT-----------------------TTTEEEEEEESCG--------------
T ss_pred cCCHH-------------HHHHHHHHHHhc-----------------------CCCCeEEEEeCCc--------------
Confidence 98654 689999999721 1234556555411
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
..+.|.+.+|+. ++.|.|++.+++.+++... +
T Consensus 151 ------------------------------------~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~-----------~ 182 (327)
T 1iqp_A 151 ------------------------------------SKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYI-----------A 182 (327)
T ss_dssp ------------------------------------GGSCHHHHHTEE-EEECCCCCHHHHHHHHHHH-----------H
T ss_pred ------------------------------------cccCHHHHhhCc-EEEecCCCHHHHHHHHHHH-----------H
Confidence 115678888987 6799999999998887641 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
... .+.++++++++|++.+ +++.|.+.+.++...
T Consensus 183 ~~~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 183 ENE--GLELTEEGLQAILYIA---EGDMRRAINILQAAA 216 (327)
T ss_dssp HTT--TCEECHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred Hhc--CCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 222 3458999999999976 667888888887654
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.9e-13 Score=140.79 Aligned_cols=179 Identities=23% Similarity=0.277 Sum_probs=117.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-----------CCCeEEEeccccc-cc----------------cccccchhhHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-----------NVPFTITDATALT-QA----------------GYVGEDAESVL 213 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-----------~~p~~~~~~s~l~-~~----------------gy~G~~~~~~l 213 (510)
.+.+++|+||||||||++|+.+++.+ +.+++.++|.... .. ++.|......+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 44689999999999999999999988 8899999987643 11 11122212222
Q ss_pred HHHHHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHH-HHHHhhCceeeeccCCCCCCCCCCCCcEEEEc
Q 038067 214 YKLLAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQA-LLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDT 292 (510)
Q Consensus 214 ~~l~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~-LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~t 292 (510)
..+.... ...+.||+|||+|.+.... .++. |..+++- .
T Consensus 124 ~~l~~~l-----~~~~~vlilDEi~~l~~~~------------~~~~~l~~l~~~-----------------------~- 162 (384)
T 2qby_B 124 DKIKNGT-----RNIRAIIYLDEVDTLVKRR------------GGDIVLYQLLRS-----------------------D- 162 (384)
T ss_dssp HHHHHHH-----SSSCEEEEEETTHHHHHST------------TSHHHHHHHHTS-----------------------S-
T ss_pred HHHHHHh-----ccCCCEEEEECHHHhccCC------------CCceeHHHHhcC-----------------------C-
Confidence 2222211 1223399999999987542 1344 5555530 0
Q ss_pred CCceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecC
Q 038067 293 KDILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLS 372 (510)
Q Consensus 293 snilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~ 372 (510)
.++.||++++..+ ....+.|.+.+|+...+.|+
T Consensus 163 ~~~~iI~~t~~~~-----------------------------------------------~~~~l~~~l~sr~~~~i~l~ 195 (384)
T 2qby_B 163 ANISVIMISNDIN-----------------------------------------------VRDYMEPRVLSSLGPSVIFK 195 (384)
T ss_dssp SCEEEEEECSSTT-----------------------------------------------TTTTSCHHHHHTCCCEEEEC
T ss_pred cceEEEEEECCCc-----------------------------------------------hHhhhCHHHHhcCCCeEEEC
Confidence 4667777766210 00126778889998899999
Q ss_pred CCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 373 ALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 373 ~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
||+.+++.+|+...+. . .-....+++++++.+++.+....+++|.+.++++..+..
T Consensus 196 ~l~~~~~~~il~~~~~-------~----~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 196 PYDAEQLKFILSKYAE-------Y----GLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp CCCHHHHHHHHHHHHH-------H----TSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-------h----hcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 9999999999975321 0 011235789999999998754446789888888876543
No 60
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=9.2e-13 Score=134.56 Aligned_cols=183 Identities=23% Similarity=0.377 Sum_probs=115.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.+++|+||||+|||++++++|..++.++...++..+.. ...+...+.. .....|+||||++.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--------~~~l~~~~~~------~~~~~v~~iDE~~~l~ 115 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--------QGDMAAILTS------LERGDVLFIDEIHRLN 115 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS--------HHHHHHHHHH------CCTTCEEEEETGGGCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC--------HHHHHHHHHH------ccCCCEEEEcchhhcC
Confidence 3468999999999999999999999998877665544321 1112222211 1245799999999986
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+. +++.|+..++.....+.+ ..+ ...+.+......+.++.+.+.
T Consensus 116 ~~-------------~~e~L~~~~~~~~~~i~~-~~~----~~~~~i~~~l~~~~li~at~~------------------ 159 (334)
T 1in4_A 116 KA-------------VEELLYSAIEDFQIDIMI-GKG----PSAKSIRIDIQPFTLVGATTR------------------ 159 (334)
T ss_dssp HH-------------HHHHHHHHHHTSCCCC--------------------CCCEEEEEESC------------------
T ss_pred HH-------------HHHHHHHHHHhcccceee-ccC----cccccccccCCCeEEEEecCC------------------
Confidence 53 688888888732211100 000 000111111222333322110
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcC
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMN 401 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~ 401 (510)
+ ..+.+.+++|+...+.|++++.+++.+|+++.. + .
T Consensus 160 ---------------------------~-----~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~----~-------~- 195 (334)
T 1in4_A 160 ---------------------------S-----GLLSSPLRSRFGIILELDFYTVKELKEIIKRAA----S-------L- 195 (334)
T ss_dssp ---------------------------G-----GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH----H-------H-
T ss_pred ---------------------------c-----ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHH----H-------H-
Confidence 0 126788999999889999999999999997521 1 1
Q ss_pred CceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 402 NVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 402 ~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
..+.++++++.+|++.+ .+.+|.+.++++++...+..
T Consensus 196 -~~~~~~~~~~~~ia~~~---~G~~R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 196 -MDVEIEDAAAEMIAKRS---RGTPRIAIRLTKRVRDMLTV 232 (334)
T ss_dssp -TTCCBCHHHHHHHHHTS---TTCHHHHHHHHHHHHHHHHH
T ss_pred -cCCCcCHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHH
Confidence 23468999999999975 56689999999887655543
No 61
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.49 E-value=1.4e-13 Score=151.64 Aligned_cols=142 Identities=16% Similarity=0.247 Sum_probs=87.9
Q ss_pred hhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCC---CCCCcEEEEcCCceee
Q 038067 222 FDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKH---PRGDNIPIDTKDILFI 298 (510)
Q Consensus 222 ~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~---~~~~~i~i~tsnilfI 298 (510)
+.+..+.+++|||||++.+.+. +|+.|+++|+.+.+++. ..+.... .... -...++.+|
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~~-------------~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~---~~p~~~~vI 256 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSLK-------------MQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTE---PVPCDFVLV 256 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCHH-------------HHHHHHHHHHHSEECCB--CSCTTSGGGGCBCS---CEECCCEEE
T ss_pred ceeeecCCCEEEEechhhCCHH-------------HHHHHHHHHHcCcEEec--ccccccccccCCCC---ccceeEEEE
Confidence 3456678899999999998654 89999999997776643 1110000 0000 123467788
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC---ceEecCCCC
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP---ILVSLSALN 375 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~---~iv~f~~Ls 375 (510)
+++|.. + ...++|+|++||+ ..+.|++..
T Consensus 257 ~atn~~-----------------------------------------------~-~~~l~~~l~~R~~v~~i~i~l~~~~ 288 (604)
T 3k1j_A 257 AAGNLD-----------------------------------------------T-VDKMHPALRSRIRGYGYEVYMRTTM 288 (604)
T ss_dssp EEECHH-----------------------------------------------H-HHHSCHHHHHHHHHHSEEEECCSEE
T ss_pred EecCHH-----------------------------------------------H-HhhcCHHHHHHhhccceEeeccccc
Confidence 887721 0 0127899999997 466776543
Q ss_pred ---HHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCC-------ChhHHHHHHHHHH
Q 038067 376 ---EDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNT-------GARGLRALLENIL 437 (510)
Q Consensus 376 ---~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~-------gaR~L~~~ie~~l 437 (510)
.+.+..++.. +.+++ ...+....+++++++.|+++++.+.. ..|.|.++++...
T Consensus 289 ~~~~~~~~~~l~~----~~~~~----~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~ 352 (604)
T 3k1j_A 289 PDTIENRRKLVQF----VAQEV----KRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAG 352 (604)
T ss_dssp ECCHHHHHHHHHH----HHHHH----HHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----HHHHH----hhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHH
Confidence 3444444431 22222 22234457999999999997653222 4788888887643
No 62
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.49 E-value=9.5e-15 Score=131.07 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=60.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
...+++|+||||||||++|+++++... |++.++|+.+... + ....+ ..+.+++||||||+.+.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~--------~~~~~-------~~a~~~~l~lDei~~l~ 88 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-M--------PMELL-------QKAEGGVLYVGDIAQYS 88 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-C--------HHHHH-------HHTTTSEEEEEECTTCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-h--------hhhHH-------HhCCCCeEEEeChHHCC
Confidence 446899999999999999999999888 9999999876532 1 22233 23467899999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhh
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.. .|..|+++++
T Consensus 89 ~~-------------~q~~Ll~~l~ 100 (143)
T 3co5_A 89 RN-------------IQTGITFIIG 100 (143)
T ss_dssp HH-------------HHHHHHHHHH
T ss_pred HH-------------HHHHHHHHHH
Confidence 65 7999999998
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=8.9e-14 Score=141.56 Aligned_cols=169 Identities=18% Similarity=0.191 Sum_probs=112.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC------CCeEEEeccccccccccccchhhHHHHHHHhhch--------hHHHhcC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN------VPFTITDATALTQAGYVGEDAESVLYKLLAAADF--------DVEAAQR 229 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~------~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~--------~~~~~~~ 229 (510)
.+++|+||||||||++|+++++.++ ..++.+++++....+++ ...+......... .......
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV----REKVKNFARLTVSKPSKHDLENYPCPPY 134 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH----TTHHHHHHHSCCCCCCTTHHHHSCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH----HHHHHHHhhhcccccchhhcccCCCCCc
Confidence 4599999999999999999999863 46788887765321111 1111111111000 0001244
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
.||+|||++.+... .++.|+++|+.. ..+..||++++..
T Consensus 135 ~vliiDE~~~l~~~-------------~~~~Ll~~le~~-----------------------~~~~~~il~~~~~----- 173 (353)
T 1sxj_D 135 KIIILDEADSMTAD-------------AQSALRRTMETY-----------------------SGVTRFCLICNYV----- 173 (353)
T ss_dssp EEEEETTGGGSCHH-------------HHHHHHHHHHHT-----------------------TTTEEEEEEESCG-----
T ss_pred eEEEEECCCccCHH-------------HHHHHHHHHHhc-----------------------CCCceEEEEeCch-----
Confidence 69999999998765 689999999831 1233445544411
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHH
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNA 389 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~ 389 (510)
..+.|.+.+|+. .+.|.+++.+++.+++...+
T Consensus 174 ---------------------------------------------~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~-- 205 (353)
T 1sxj_D 174 ---------------------------------------------TRIIDPLASQCS-KFRFKALDASNAIDRLRFIS-- 205 (353)
T ss_dssp ---------------------------------------------GGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH--
T ss_pred ---------------------------------------------hhCcchhhccCc-eEEeCCCCHHHHHHHHHHHH--
Confidence 015678899997 67999999999988886411
Q ss_pred HHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHH
Q 038067 390 LGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTE 439 (510)
Q Consensus 390 l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~ 439 (510)
... .+.++++++++|++.+ .++.|.+.+.++.....
T Consensus 206 ---------~~~--~~~i~~~~l~~l~~~~---~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 206 ---------EQE--NVKCDDGVLERILDIS---AGDLRRGITLLQSASKG 241 (353)
T ss_dssp ---------HTT--TCCCCHHHHHHHHHHT---SSCHHHHHHHHHHTHHH
T ss_pred ---------HHh--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHh
Confidence 122 3468999999999986 35689988888876543
No 64
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=7.5e-14 Score=139.77 Aligned_cols=165 Identities=22% Similarity=0.301 Sum_probs=113.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+++|+||||||||++|+++++.+ +.+++.+++++.... ......+.......+ +....+.||+|||+|
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~vliiDe~~ 112 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI----DVVRHKIKEFARTAP--IGGAPFKIIFLDEAD 112 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT----TTSSHHHHHHHHSCC--SSSCCCEEEEEETGG
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh----HHHHHHHHHHHhcCC--CCCCCceEEEEeCCC
Confidence 359999999999999999999987 346788888765321 111222222221111 112356899999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+... .++.|++.++. ...++.||++++..
T Consensus 113 ~l~~~-------------~~~~L~~~le~-----------------------~~~~~~~i~~~~~~-------------- 142 (319)
T 2chq_A 113 ALTAD-------------AQAALRRTMEM-----------------------YSKSCRFILSCNYV-------------- 142 (319)
T ss_dssp GSCHH-------------HHHTTGGGTSS-----------------------SSSSEEEEEEESCG--------------
T ss_pred cCCHH-------------HHHHHHHHHHh-----------------------cCCCCeEEEEeCCh--------------
Confidence 98754 68889999872 12345566665511
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMF 398 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~ 398 (510)
..+.|.+.+|+. ++.|.+++.+++.+++... +
T Consensus 143 ------------------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~-----------~ 174 (319)
T 2chq_A 143 ------------------------------------SRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEI-----------C 174 (319)
T ss_dssp ------------------------------------GGSCHHHHTTCE-EEECCCCCHHHHHHHHHHH-----------H
T ss_pred ------------------------------------hhcchHHHhhCe-EEEecCCCHHHHHHHHHHH-----------H
Confidence 126778899987 6799999999998888641 1
Q ss_pred hcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 399 SMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 399 ~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
... .+.+++++++.|++.+ +++.|.+.+.++...
T Consensus 175 ~~~--~~~i~~~~l~~l~~~~---~G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 175 EKE--GVKITEDGLEALIYIS---GGDFRKAINALQGAA 208 (319)
T ss_dssp HTT--CCCBCHHHHHHHHHTT---TTCHHHHHHHHHHHH
T ss_pred HHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 222 3458999999999764 667898888888765
No 65
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.48 E-value=5e-13 Score=126.82 Aligned_cols=172 Identities=23% Similarity=0.268 Sum_probs=106.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeE--EEecc--------------ccccccccccchhhHHHHHHHhhchhHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFT--ITDAT--------------ALTQAGYVGEDAESVLYKLLAAADFDVEA 226 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~--~~~~s--------------~l~~~gy~G~~~~~~l~~l~~~~~~~~~~ 226 (510)
+..++|+||+|+|||++++.+++.++.... ...+. ++.............+..++.........
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR 124 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhc
Confidence 357999999999999999999998843211 00000 00000000001112233444332111112
Q ss_pred hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccch
Q 038067 227 AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGL 306 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l 306 (510)
..+.+|+|||++.+... .++.|++.++. . ..++.+|++++..
T Consensus 125 ~~~~vlviDe~~~l~~~-------------~~~~l~~~l~~---------~--------------~~~~~~i~~t~~~-- 166 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-------------SFNALLKTLEE---------P--------------PEHVKFLLATTDP-- 166 (250)
T ss_dssp SSSEEEEEETGGGSCHH-------------HHHHHHHHHHS---------C--------------CTTEEEEEEESCG--
T ss_pred CCceEEEEECcccccHH-------------HHHHHHHHHhc---------C--------------CCceEEEEEeCCh--
Confidence 34679999999997654 68899999972 0 1345556555411
Q ss_pred HHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhch
Q 038067 307 EKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEP 386 (510)
Q Consensus 307 ~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~ 386 (510)
..+.+.+.+|+ ..+.|.+++.+++.+++...
T Consensus 167 ------------------------------------------------~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~ 197 (250)
T 1njg_A 167 ------------------------------------------------QKLPVTILSRC-LQFHLKALDVEQIRHQLEHI 197 (250)
T ss_dssp ------------------------------------------------GGSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred ------------------------------------------------HhCCHHHHHHh-hhccCCCCCHHHHHHHHHHH
Confidence 01455677885 56799999999999988742
Q ss_pred hHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 387 KNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 387 ~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+ ...+ +.+++++++.|++.+ .+..|.+.+++++++
T Consensus 198 ~-----------~~~~--~~~~~~~~~~l~~~~---~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 198 L-----------NEEH--IAHEPRALQLLARAA---EGSLRDALSLTDQAI 232 (250)
T ss_dssp H-----------HHTT--CCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred H-----------HhcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 1 1123 467899999999986 557899998888764
No 66
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.48 E-value=8.8e-14 Score=127.61 Aligned_cols=142 Identities=22% Similarity=0.275 Sum_probs=90.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccccc-cccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQA-GYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~~-gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.+++|+||||||||++|+++++.+ +.+++.+++..+... .+.+.. ...+..++... .....+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHH-HHHHHHHHHHH---HHSTTTE
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccH-HHHHHHHHHHH---hhcCCCe
Confidence 44689999999999999999999987 678888888776421 222221 23333333321 0123456
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
||+|||++.+.......... .+++.|..+++. .++.+|++++...+...
T Consensus 118 vl~iDe~~~l~~~~~~~~~~-----~~~~~l~~~~~~-------------------------~~~~~i~~~~~~~~~~~- 166 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAM-----DAGNMLKPALAR-------------------------GELHCVGATTLDEYRQY- 166 (195)
T ss_dssp EEEEETGGGGTT------CC-----CCHHHHHHHHHT-------------------------TSCCEEEEECHHHHHHH-
T ss_pred EEEEeCHHHHhccCcccchH-----HHHHHHHHhhcc-------------------------CCeEEEEeCCHHHHHHH-
Confidence 99999999997543211111 267788888752 24456666552111000
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVL 383 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il 383 (510)
..+.|.|++||+ .+.|.+++.+++.+|+
T Consensus 167 --------------------------------------------~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 167 --------------------------------------------IEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --------------------------------------------TTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --------------------------------------------HhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 125788999998 4799999999988775
No 67
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.47 E-value=1.8e-13 Score=145.28 Aligned_cols=178 Identities=17% Similarity=0.267 Sum_probs=116.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHh-cCcEEEEcc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAA-QRGIVYIDE 236 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~-~~~Vl~iDE 236 (510)
..+++|+||||||||++|+++++.+ +.+++.+++..+... +...-....... +.. ... .+.||||||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~-~~~~~~~~~~~~-~~~-----~~~~~~~vL~IDE 202 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNE-FRE-----KYRKKVDILLIDD 202 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH-HHHHHHTTCHHH-HHH-----HHTTTCSEEEEEC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHcccHHH-HHH-----HhcCCCCEEEEeC
Confidence 3589999999999999999999988 788999998776421 111000000001 100 112 568999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
++.+.... ..++.|+..++... + .+..+|++++..
T Consensus 203 i~~l~~~~-----------~~q~~l~~~l~~l~------~----------------~~~~iIitt~~~------------ 237 (440)
T 2z4s_A 203 VQFLIGKT-----------GVQTELFHTFNELH------D----------------SGKQIVICSDRE------------ 237 (440)
T ss_dssp GGGGSSCH-----------HHHHHHHHHHHHHH------T----------------TTCEEEEEESSC------------
T ss_pred cccccCCh-----------HHHHHHHHHHHHHH------H----------------CCCeEEEEECCC------------
Confidence 99987531 25778888875210 0 111222232200
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQY 394 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~ 394 (510)
+.++ ..+.+.+++||. .++.+.+++.+++.+|+...+ .
T Consensus 238 --------------------------------~~~l--~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~----~-- 277 (440)
T 2z4s_A 238 --------------------------------PQKL--SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML----E-- 277 (440)
T ss_dssp --------------------------------GGGC--SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH----H--
T ss_pred --------------------------------HHHH--HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH----H--
Confidence 0000 126788999996 678999999999999987522 1
Q ss_pred HHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 395 KKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 395 ~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
. ..+.++++++++|+..+ .+++|.+.+++++++..+..
T Consensus 278 -----~--~~~~i~~e~l~~la~~~---~gn~R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 278 -----I--EHGELPEEVLNFVAENV---DDNLRRLRGAIIKLLVYKET 315 (440)
T ss_dssp -----H--HTCCCCTTHHHHHHHHC---CSCHHHHHHHHHHHHHHHHH
T ss_pred -----H--cCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 1 12457899999999875 56799999999998866543
No 68
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=1.2e-13 Score=141.66 Aligned_cols=189 Identities=21% Similarity=0.176 Sum_probs=119.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---------CCCeEEEecccccccc---------------ccccchhhHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---------NVPFTITDATALTQAG---------------YVGEDAESVLYKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---------~~p~~~~~~s~l~~~g---------------y~G~~~~~~l~~l~ 217 (510)
.+.+++|+||||||||++++.+++.+ +.+++.++|....... +.|......+..+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 122 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLV 122 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 45689999999999999999999988 7889999987654210 11222222222222
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEE-cCCce
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPID-TKDIL 296 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~-tsnil 296 (510)
.... ....+.||+|||++.+...+. .++.|+.+++-. ... . ..++.
T Consensus 123 ~~l~---~~~~~~vlilDEi~~l~~~~~-----------~~~~l~~l~~~~-------~~~------------~~~~~~~ 169 (387)
T 2v1u_A 123 KRLS---RLRGIYIIVLDEIDFLPKRPG-----------GQDLLYRITRIN-------QEL------------GDRVWVS 169 (387)
T ss_dssp HHHT---TSCSEEEEEEETTTHHHHSTT-----------HHHHHHHHHHGG-------GCC-----------------CE
T ss_pred HHHh---ccCCeEEEEEccHhhhcccCC-----------CChHHHhHhhch-------hhc------------CCCceEE
Confidence 2110 012245999999999975420 245555555310 000 0 24566
Q ss_pred eecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCC
Q 038067 297 FICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALN 375 (510)
Q Consensus 297 fI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls 375 (510)
+|++++..+ ....+.+.+.+|+.. .+.|+|++
T Consensus 170 ~I~~t~~~~-----------------------------------------------~~~~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 170 LVGITNSLG-----------------------------------------------FVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp EEEECSCST-----------------------------------------------TSSSSCHHHHTTTTSEECCBCCCC
T ss_pred EEEEECCCc-----------------------------------------------hHhhhCHHHHhcCCCeEEeeCCCC
Confidence 777766210 001267788899986 78999999
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 376 EDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 376 ~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
.+++.+|+...+. ..+ ....+++++++.+++.+....+.+|.+.++++..+..+.
T Consensus 203 ~~~~~~il~~~~~-------~~~----~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 203 APQLRDILETRAE-------EAF----NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHHHH-------HHB----CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------hhc----cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999975321 101 124578899999999875555779999999988775544
No 69
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=9.3e-13 Score=135.48 Aligned_cols=185 Identities=17% Similarity=0.215 Sum_probs=119.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccccccc-----------cc----cccchhhHHHHHHHhhchhHH
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATALTQA-----------GY----VGEDAESVLYKLLAAADFDVE 225 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l~~~-----------gy----~G~~~~~~l~~l~~~~~~~~~ 225 (510)
+++|+||||||||++++.+++.+ +.+++.++|...... +. .+......+..+.... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~ 122 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RE 122 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hh
Confidence 89999999999999999999998 567889997764321 00 1111111111111110 01
Q ss_pred HhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccc
Q 038067 226 AAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVG 305 (510)
Q Consensus 226 ~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~ 305 (510)
...+.||+|||++.+... ++..|+++++...- -...++.+|++++..+
T Consensus 123 ~~~~~vlilDE~~~l~~~-------------~~~~L~~~~~~~~~-------------------~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLAPD-------------ILSTFIRLGQEADK-------------------LGAFRIALVIVGHNDA 170 (389)
T ss_dssp TTCCEEEEEETGGGSCHH-------------HHHHHHHHTTCHHH-------------------HSSCCEEEEEEESSTH
T ss_pred cCCeEEEEEECccccchH-------------HHHHHHHHHHhCCC-------------------CCcCCEEEEEEECCch
Confidence 123569999999998332 78999999862100 0013556666655211
Q ss_pred hHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCHHHHHHHHh
Q 038067 306 LEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNEDQLVQVLM 384 (510)
Q Consensus 306 l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~eel~~Il~ 384 (510)
+ ...+.+.+.+|+.. .+.|+|++.+++.+++.
T Consensus 171 ----------------------------------------------~-~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~ 203 (389)
T 1fnn_A 171 ----------------------------------------------V-LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203 (389)
T ss_dssp ----------------------------------------------H-HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHH
T ss_pred ----------------------------------------------H-HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 0 01256778888876 78999999999999987
Q ss_pred chhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCC------CCChhHHHHHHHHHHHHHHh
Q 038067 385 EPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAK------NTGARGLRALLENILTEAMF 442 (510)
Q Consensus 385 ~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~------~~gaR~L~~~ie~~l~~~l~ 442 (510)
..+. ..+ ....+++++++.+++.++.. .+++|.+.++++..+..+..
T Consensus 204 ~~~~-------~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 204 DRAK-------AGL----AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHH-------HHB----CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------hhc----CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5321 111 12258999999999987654 56789999999887765543
No 70
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.43 E-value=3.8e-13 Score=128.68 Aligned_cols=171 Identities=17% Similarity=0.247 Sum_probs=115.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
.+.+++|+||||||||++|+++++.+ +.+++.+++.++... + ...+. ....+.+|+|||++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~----------~~~~~~vliiDe~~ 114 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-S-----TALLE----------GLEQFDLICIDDVD 114 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-C-----GGGGT----------TGGGSSEEEEETGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-H-----HHHHH----------hccCCCEEEEeccc
Confidence 34689999999999999999999988 478888988876532 1 11110 01356899999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCC
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSS 318 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~ 318 (510)
.+.... ..++.|+.+++... ....+.+|++++..
T Consensus 115 ~~~~~~-----------~~~~~l~~~l~~~~---------------------~~~~~~ii~~~~~~-------------- 148 (242)
T 3bos_A 115 AVAGHP-----------LWEEAIFDLYNRVA---------------------EQKRGSLIVSASAS-------------- 148 (242)
T ss_dssp GGTTCH-----------HHHHHHHHHHHHHH---------------------HHCSCEEEEEESSC--------------
T ss_pred cccCCH-----------HHHHHHHHHHHHHH---------------------HcCCCeEEEEcCCC--------------
Confidence 986532 14777877775210 01112133333310
Q ss_pred CCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccC--ceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 319 IGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFP--ILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 319 ~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~--~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
+.++ ..+.+.+.+|+. .++.|.+++.+++.+++...+
T Consensus 149 ------------------------------~~~~--~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~--------- 187 (242)
T 3bos_A 149 ------------------------------PMEA--GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA--------- 187 (242)
T ss_dssp ------------------------------TTTT--TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH---------
T ss_pred ------------------------------HHHH--HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH---------
Confidence 0000 013468888996 788999999999999887421
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHh
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMF 442 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~ 442 (510)
...+ +.++++++++|++.+ .++.|.+.+++++++..+..
T Consensus 188 --~~~~--~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 188 --AMRG--LQLPEDVGRFLLNRM---ARDLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp --HHTT--CCCCHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHH
T ss_pred --HHcC--CCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Confidence 1123 468999999999874 56799999999998876643
No 71
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.41 E-value=2e-12 Score=132.47 Aligned_cols=164 Identities=24% Similarity=0.290 Sum_probs=108.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLLA 218 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~~ 218 (510)
+..++|+||+|||||++|+++++.++.. ++.++... ..+ ...++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~l~~ 109 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRDLLD 109 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-----SCC---SSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc-----cCC---HHHHHHHHH
Confidence 3468999999999999999999988531 12222211 001 112334443
Q ss_pred hhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceee
Q 038067 219 AADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFI 298 (510)
Q Consensus 219 ~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI 298 (510)
..........+.||+|||+|.+... .++.|++.++. ...+++||
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le~-----------------------~~~~~~~I 153 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLEE-----------------------PPEHVKFL 153 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHHS-----------------------CCSSEEEE
T ss_pred HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHhc-----------------------CCCceEEE
Confidence 3211111234579999999998654 68999999973 12345566
Q ss_pred cCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHH
Q 038067 299 CGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQ 378 (510)
Q Consensus 299 ~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~ee 378 (510)
++++.. ..+.+.+.+|+ .++.|.+++.++
T Consensus 154 l~~~~~--------------------------------------------------~~l~~~l~sr~-~~i~~~~l~~~~ 182 (373)
T 1jr3_A 154 LATTDP--------------------------------------------------QKLPVTILSRC-LQFHLKALDVEQ 182 (373)
T ss_dssp EEESCG--------------------------------------------------GGSCHHHHTTS-EEEECCCCCHHH
T ss_pred EEeCCh--------------------------------------------------HhCcHHHHhhe-eEeeCCCCCHHH
Confidence 554410 12566788887 567999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
+.+++...+ + ..+ +.+++++++.|++.+ +++.|.+.+.+++.+
T Consensus 183 ~~~~l~~~~----~-------~~~--~~~~~~a~~~l~~~~---~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 183 IRHQLEHIL----N-------EEH--IAHEPRALQLLARAA---EGSLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHH----H-------HHT--CCBCHHHHHHHHHHS---SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH----H-------HcC--CCCCHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 998887421 1 113 457899999999875 567899999988765
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=8.7e-13 Score=132.21 Aligned_cols=163 Identities=19% Similarity=0.263 Sum_probs=111.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccccccccccccchhhHHHHHHHhhc---hhHHHhcCcEEEEc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATALTQAGYVGEDAESVLYKLLAAAD---FDVEAAQRGIVYID 235 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~---~~~~~~~~~Vl~iD 235 (510)
.+++|+||+|+|||++|+.+++.+ +.+++.+++++... ...+...+.... .......+.||+||
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~viiiD 114 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG--------IDVVRNQIKHFAQKKLHLPPGKHKIVILD 114 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS--------HHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC--------hHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence 359999999999999999999986 34577777765321 112222222110 00002246799999
Q ss_pred chhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcc
Q 038067 236 EVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQ 315 (510)
Q Consensus 236 Eidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~ 315 (510)
|++.+... .++.|++.++. ...++.||++++..
T Consensus 115 e~~~l~~~-------------~~~~L~~~le~-----------------------~~~~~~~il~~~~~----------- 147 (323)
T 1sxj_B 115 EADSMTAG-------------AQQALRRTMEL-----------------------YSNSTRFAFACNQS----------- 147 (323)
T ss_dssp SGGGSCHH-------------HHHTTHHHHHH-----------------------TTTTEEEEEEESCG-----------
T ss_pred CcccCCHH-------------HHHHHHHHHhc-----------------------cCCCceEEEEeCCh-----------
Confidence 99998754 58899999972 01334555555410
Q ss_pred cCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHH
Q 038067 316 DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYK 395 (510)
Q Consensus 316 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~ 395 (510)
..+.|.+.+|+. ++.|.+++.+++.+++...+ +
T Consensus 148 ---------------------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~----~--- 180 (323)
T 1sxj_B 148 ---------------------------------------NKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQII----K--- 180 (323)
T ss_dssp ---------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH----H---
T ss_pred ---------------------------------------hhchhHHHhhce-EEeecCCCHHHHHHHHHHHH----H---
Confidence 125678888987 67999999999999887421 1
Q ss_pred HHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 396 KMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 396 ~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
..+ +.+++++++.|++.+ +++.|.+.+.++...
T Consensus 181 ----~~~--~~~~~~~~~~l~~~~---~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 181 ----LED--VKYTNDGLEAIIFTA---EGDMRQAINNLQSTV 213 (323)
T ss_dssp ----HHT--CCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred ----HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 112 357899999999986 667888888888765
No 73
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.40 E-value=1.5e-12 Score=137.44 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=118.2
Q ss_pred CceEEEEccCCChHHHHHHHH-HHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTL-ARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~l-A~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
..|+||.|+||| ||++|+++ ++.+.. .+......-...|..+. .... .. +.-.++.+..+.+||+|||||+++.
T Consensus 239 dihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~ 313 (506)
T 3f8t_A 239 RLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAP 313 (506)
T ss_dssp CCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCC
T ss_pred ceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCC
Confidence 348999999999 99999999 877633 22221110000111111 0000 11 2223455667789999999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
+. +|.+|+++||.+.+++. |. -...++.+|+|.|..+ .|
T Consensus 314 ~~-------------~qsaLlEaMEe~~VtI~----G~----------~lparf~VIAA~NP~~--------------~y 352 (506)
T 3f8t_A 314 EP-------------HRWALMEAMDKGTVTVD----GI----------ALNARCAVLAAINPGE--------------QW 352 (506)
T ss_dssp HH-------------HHHHHHHHHHHSEEEET----TE----------EEECCCEEEEEECCCC----------------
T ss_pred HH-------------HHHHHHHHHhCCcEEEC----CE----------EcCCCeEEEEEeCccc--------------cc
Confidence 65 79999999998888762 21 2234566666666321 11
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHH-----HHHHhchhHHHHHHHHH
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQL-----VQVLMEPKNALGRQYKK 396 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel-----~~Il~~~~~~l~~~~~~ 396 (510)
... . .+ + ...+.+++++|||.++........+. ..++. ...++.|..
T Consensus 353 d~~---------~-------s~-~--------~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~ 404 (506)
T 3f8t_A 353 PSD---------P-------PI-A--------RIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLL 404 (506)
T ss_dssp CCS---------C-------GG-G--------GCCSCHHHHTTCSEEEETTC--------------CC---HHHHHHHHH
T ss_pred CCC---------C-------Cc-c--------ccCCChHHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHH
Confidence 100 0 00 1 23488999999999766555443222 11221 134445554
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhC---------------CCCCChhHHHHHHHHHHHHHHhcCcC
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAM---------------AKNTGARGLRALLENILTEAMFEIPE 446 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~---------------~~~~gaR~L~~~ie~~l~~~l~~~~~ 446 (510)
..........+++++.++|.+... .....+|.+..++.- ..+...+-.
T Consensus 405 ~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl--A~A~A~L~g 467 (506)
T 3f8t_A 405 YAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL--AKAHARMRL 467 (506)
T ss_dssp HHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH--HHHHHHHTT
T ss_pred HHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH--HHHHHHHcC
Confidence 433235578899999988875411 123456988888874 444444443
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=5.7e-12 Score=144.09 Aligned_cols=168 Identities=21% Similarity=0.290 Sum_probs=98.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccccc-ccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQ-AGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~-~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.+++|+||||||||++|+.+|+.+ +.+++.++++.+.. ..|.|.. ...+..++.... ....+.
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~-~~~l~~~~~~~~---~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF-EERLKAVIQEVV---QSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CH-HHHHHHHHHHHH---TTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHH-HHHHHHHHHHHH---hcCCCe
Confidence 44689999999999999999999988 78899999988763 2355543 445555554431 112457
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
||||||++.+.......+ ...+.+.|..+++. .++.+|++++.....+
T Consensus 266 iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~~-------------------------~~i~~I~at~~~~~~~-- 313 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEG-----AVDAGNMLKPALAR-------------------------GELRLIGATTLDEYRE-- 313 (854)
T ss_dssp EEEECCC------------------------HHHHHT-------------------------TCCCEEEEECHHHHHH--
T ss_pred EEEEecHHHHhccCCccc-----hHHHHHHHHHHHhC-------------------------CCeEEEEecCchHHhh--
Confidence 999999999975432221 12367788888862 1234555555211100
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
....|.|.+||+. |.|++++.++..+|++. +
T Consensus 314 --------------------------------------------~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~----~ 344 (854)
T 1qvr_A 314 --------------------------------------------IEKDPALERRFQP-VYVDEPTVEETISILRG----L 344 (854)
T ss_dssp --------------------------------------------HTTCTTTCSCCCC-EEECCCCHHHHHHHHHH----H
T ss_pred --------------------------------------------hccCHHHHhCCce-EEeCCCCHHHHHHHHHh----h
Confidence 1256789999986 79999999999999974 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|.. ...+.++++++..+++.+
T Consensus 345 ~~~~~~-----~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 345 KEKYEV-----HHGVRISDSAIIAAATLS 368 (854)
T ss_dssp HHHHHH-----HTTCEECHHHHHHHHHHH
T ss_pred hhhhhh-----hcCCCCCHHHHHHHHHHH
Confidence 343332 124568899999888865
No 75
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.37 E-value=6e-12 Score=142.92 Aligned_cols=145 Identities=23% Similarity=0.386 Sum_probs=104.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
++.++||+||||||||++|+++|..++.+++.+++.++.. .|.|.. ...+..+++.+ ....++++||||++.+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~-~~~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~ 310 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGES-ESNLRKAFEEA----EKNAPAIIFIDELDAIA 310 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS-SSTTHH-HHHHHHHHHHH----HHHCSEEEEEESGGGTS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh-hhhhhH-HHHHHHHHHHH----HhcCCcEEEeccHHHhh
Confidence 5678999999999999999999999999999999998874 355554 45566666654 34567899999999987
Q ss_pred hhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccCCCCc
Q 038067 242 KAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDSSIGF 321 (510)
Q Consensus 242 ~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~~~gf 321 (510)
..+.. ........+++.|+.++++... ..++++|+++|..
T Consensus 311 ~~~~~--~~~~~~~~~~~~Ll~ll~g~~~---------------------~~~v~vI~atn~~----------------- 350 (806)
T 1ypw_A 311 PKREK--THGEVERRIVSQLLTLMDGLKQ---------------------RAHVIVMAATNRP----------------- 350 (806)
T ss_dssp CTTSC--CCSHHHHHHHHHHHHHHHSSCT---------------------TSCCEEEEECSCT-----------------
T ss_pred hcccc--ccchHHHHHHHHHHHHhhhhcc---------------------cccEEEecccCCc-----------------
Confidence 65321 1122224588899999984210 1345666666521
Q ss_pred CcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhc--ccCceEecCCCCHHHHHHHHhc
Q 038067 322 GAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIG--RFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~--R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
..+.|.+.. ||+..+.+..++.++..+|+..
T Consensus 351 ---------------------------------~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~ 383 (806)
T 1ypw_A 351 ---------------------------------NSIDPALRRFGRFDREVDIGIPDATGRLEILQI 383 (806)
T ss_dssp ---------------------------------TTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHH
T ss_pred ---------------------------------hhcCHHHhcccccccccccCCCCHHHHHHHHHH
Confidence 013444444 9999999999999999999864
No 76
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=9.1e-13 Score=142.47 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=108.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhH-----HHHHHHhhc-hhHHHhcCcEEEEc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESV-----LYKLLAAAD-FDVEAAQRGIVYID 235 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~-----l~~l~~~~~-~~~~~~~~~Vl~iD 235 (510)
...++||+||||||||++|+++|+.++.+++.++++++............. +..++.... .......+.|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 457899999999999999999999999999999998865321100000000 001111000 00012456899999
Q ss_pred chhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcc
Q 038067 236 EVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQ 315 (510)
Q Consensus 236 Eidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~ 315 (510)
|+|.+..... +..+.|+++++. .+..+|++++...
T Consensus 156 Eid~l~~~~~----------~~l~~L~~~l~~-------------------------~~~~iIli~~~~~---------- 190 (516)
T 1sxj_A 156 EVDGMSGGDR----------GGVGQLAQFCRK-------------------------TSTPLILICNERN---------- 190 (516)
T ss_dssp SGGGCCTTST----------THHHHHHHHHHH-------------------------CSSCEEEEESCTT----------
T ss_pred CCCccchhhH----------HHHHHHHHHHHh-------------------------cCCCEEEEEcCCC----------
Confidence 9999875321 256888888862 1222333333000
Q ss_pred cCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHH
Q 038067 316 DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYK 395 (510)
Q Consensus 316 ~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~ 395 (510)
....++|. |....+.|.+++.+++.+++... ..
T Consensus 191 ---------------------------------------~~~l~~l~-~r~~~i~f~~~~~~~~~~~L~~i----~~--- 223 (516)
T 1sxj_A 191 ---------------------------------------LPKMRPFD-RVCLDIQFRRPDANSIKSRLMTI----AI--- 223 (516)
T ss_dssp ---------------------------------------SSTTGGGT-TTSEEEECCCCCHHHHHHHHHHH----HH---
T ss_pred ---------------------------------------CccchhhH-hceEEEEeCCCCHHHHHHHHHHH----HH---
Confidence 00123344 44457899999999999888641 11
Q ss_pred HHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 038067 396 KMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENIL 437 (510)
Q Consensus 396 ~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l 437 (510)
..+ +.+++++++.|++.+ .++.|.+.++++.+.
T Consensus 224 ----~~~--~~i~~~~l~~la~~s---~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 224 ----REK--FKLDPNVIDRLIQTT---RGDIRQVINLLSTIS 256 (516)
T ss_dssp ----HHT--CCCCTTHHHHHHHHT---TTCHHHHHHHHTHHH
T ss_pred ----HcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 113 447899999999875 556898888887654
No 77
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.36 E-value=4.2e-12 Score=135.65 Aligned_cols=152 Identities=26% Similarity=0.335 Sum_probs=93.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGI 231 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~V 231 (510)
.+.|+||+||||||||++|+++|+.+ +.+++.++++ ..|.|.. +..+..++... ....++|
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~~~~g~~-e~~~~~~~~~~----~~~~~~i 270 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----TKYRGEF-EDRLKKVMDEI----RQAGNII 270 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHH----HTCCCCE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----ccccchH-HHHHHHHHHHH----HhcCCeE
Confidence 45689999999999999999999997 6788888887 3355553 34455555443 2346789
Q ss_pred EEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHH
Q 038067 232 VYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTIS 311 (510)
Q Consensus 232 l~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~ 311 (510)
|||| . .. ..++.|+++|+. .++.+|+++|.....+.+
T Consensus 271 LfiD-----~-~~-----------~a~~~L~~~L~~-------------------------g~v~vI~at~~~e~~~~~- 307 (468)
T 3pxg_A 271 LFID-----A-AI-----------DASNILKPSLAR-------------------------GELQCIGATTLDEYRKYI- 307 (468)
T ss_dssp EEEC-----C--------------------CCCTTS-------------------------SSCEEEEECCTTTTHHHH-
T ss_pred EEEe-----C-ch-----------hHHHHHHHhhcC-------------------------CCEEEEecCCHHHHHHHh-
Confidence 9999 1 11 267888888862 134566666533211111
Q ss_pred hhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHH
Q 038067 312 ERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALG 391 (510)
Q Consensus 312 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~ 391 (510)
.+.|.|.+||.. |.|.+++.+++.+|++..+
T Consensus 308 --------------------------------------------~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~---- 338 (468)
T 3pxg_A 308 --------------------------------------------EKDAALERRFQP-IQVDQPSVDESIQILQGLR---- 338 (468)
T ss_dssp --------------------------------------------TTCSHHHHSEEE-EECCCCCHHHHHHHHHHTT----
T ss_pred --------------------------------------------hcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHH----
Confidence 257889999985 7999999999999997422
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
..|. ....+.++++++.+++..+
T Consensus 339 ~~~~-----~~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 339 DRYE-----AHHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp TTSG-----GGSSCSCCHHHHHHHHHHH
T ss_pred HHHH-----HhcCCCCCHHHHHHHHHHH
Confidence 1111 1234567888888887754
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=3.8e-12 Score=129.91 Aligned_cols=162 Identities=20% Similarity=0.291 Sum_probs=105.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCC-----CeEEEeccccccccccccchhhHHHHHHHhhc--hhHHHhcCcEEEEcc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNV-----PFTITDATALTQAGYVGEDAESVLYKLLAAAD--FDVEAAQRGIVYIDE 236 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~-----p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~--~~~~~~~~~Vl~iDE 236 (510)
.|++|+||||||||++|+++|+.+.. .+..+++++.. | ...++..+.... .........|++|||
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~-----~---~~~ir~~i~~~~~~~~~~~~~~~viiiDe 118 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR-----G---IDVVRNQIKDFASTRQIFSKGFKLIILDE 118 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC-----S---HHHHHTHHHHHHHBCCSSSCSCEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc-----c---HHHHHHHHHHHHhhcccCCCCceEEEEeC
Confidence 35999999999999999999998732 35556655421 1 112222221110 000012367999999
Q ss_pred hhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 237 VDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 237 idkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
+|.+... .++.|++.+|. ...++.||+++|..
T Consensus 119 ~~~l~~~-------------~~~~L~~~le~-----------------------~~~~~~~il~~n~~------------ 150 (340)
T 1sxj_C 119 ADAMTNA-------------AQNALRRVIER-----------------------YTKNTRFCVLANYA------------ 150 (340)
T ss_dssp GGGSCHH-------------HHHHHHHHHHH-----------------------TTTTEEEEEEESCG------------
T ss_pred CCCCCHH-------------HHHHHHHHHhc-----------------------CCCCeEEEEEecCc------------
Confidence 9998754 69999999982 01234455554411
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
..+.|.+.+|+. ++.|.+++.+++.+++...
T Consensus 151 --------------------------------------~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~---------- 181 (340)
T 1sxj_C 151 --------------------------------------HKLTPALLSQCT-RFRFQPLPQEAIERRIANV---------- 181 (340)
T ss_dssp --------------------------------------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHH----------
T ss_pred --------------------------------------cccchhHHhhce-eEeccCCCHHHHHHHHHHH----------
Confidence 126788999987 5799999999988887641
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENI 436 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~ 436 (510)
+...+ +.+++++++.+++.+ ++..|.+.+.++..
T Consensus 182 -~~~~~--~~i~~~~~~~i~~~s---~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 182 -LVHEK--LKLSPNAEKALIELS---NGDMRRVLNVLQSC 215 (340)
T ss_dssp -HHTTT--CCBCHHHHHHHHHHH---TTCHHHHHHHTTTT
T ss_pred -HHHcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 11223 457899999999986 55567766666643
No 79
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=3.8e-12 Score=129.93 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=51.1
Q ss_pred CchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeC-HHHHHHHHHhhCCCCCChhHHHHHHHH
Q 038067 357 LIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFT-DDALRLIAKKAMAKNTGARGLRALLEN 435 (510)
Q Consensus 357 ~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is-~~al~~La~~~~~~~~gaR~L~~~ie~ 435 (510)
+.|.+.+|+ .++.|.+++.+++.+++.... + ..+ +.++ +++++.|++.+ .++.|.+.+.++.
T Consensus 177 l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~----~-------~~~--~~~~~~~~l~~i~~~~---~G~~r~a~~~l~~ 239 (354)
T 1sxj_E 177 IIAPIKSQC-LLIRCPAPSDSEISTILSDVV----T-------NER--IQLETKDILKRIAQAS---NGNLRVSLLMLES 239 (354)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHH----H-------HHT--CEECCSHHHHHHHHHH---TTCHHHHHHHHTH
T ss_pred HHHHHHhhc-eEEecCCcCHHHHHHHHHHHH----H-------HcC--CCCCcHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 567889999 678999999999999887421 1 123 4578 99999999986 6778999999997
Q ss_pred HHH
Q 038067 436 ILT 438 (510)
Q Consensus 436 ~l~ 438 (510)
...
T Consensus 240 ~~~ 242 (354)
T 1sxj_E 240 MAL 242 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=8.7e-12 Score=127.57 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=118.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh------CCCeEEEeccccccc-----------c----ccccchhhHHHHHHHhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV------NVPFTITDATALTQA-----------G----YVGEDAESVLYKLLAAA 220 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l------~~p~~~~~~s~l~~~-----------g----y~G~~~~~~l~~l~~~~ 220 (510)
.+.+++|+||+|||||++++.+++.+ +.+++.+++...... + ..+......+..+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~- 122 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKA- 122 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHH-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH-
Confidence 45689999999999999999999988 788999997643211 0 1111112222222211
Q ss_pred chhHHH-hcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeec
Q 038067 221 DFDVEA-AQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFIC 299 (510)
Q Consensus 221 ~~~~~~-~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~ 299 (510)
+.. ..+.||+|||++.+..... ..++..|+..++.. ...++.+|+
T Consensus 123 ---l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~----------------------~~~~~~~I~ 168 (386)
T 2qby_A 123 ---VRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEV----------------------NKSKISFIG 168 (386)
T ss_dssp ---HHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSC----------------------CC--EEEEE
T ss_pred ---HhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhc----------------------CCCeEEEEE
Confidence 111 2367999999999875421 12778888888520 123556666
Q ss_pred CCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCc-eEecCCCCHHH
Q 038067 300 GGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPI-LVSLSALNEDQ 378 (510)
Q Consensus 300 tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~-iv~f~~Ls~ee 378 (510)
+++..+ + ...+.+.+.+|+.. .+.|+|++.++
T Consensus 169 ~~~~~~-------------------------------------~----------~~~~~~~~~~r~~~~~i~l~~l~~~~ 201 (386)
T 2qby_A 169 ITNDVK-------------------------------------F----------VDLLDPRVKSSLSEEEIIFPPYNAEE 201 (386)
T ss_dssp EESCGG-------------------------------------G----------GGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred EECCCC-------------------------------------h----------HhhhCHHHhccCCCeeEEeCCCCHHH
Confidence 665211 0 01145567778864 78999999999
Q ss_pred HHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHH
Q 038067 379 LVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAM 441 (510)
Q Consensus 379 l~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l 441 (510)
+.+++...+ ... .....+++++++++++.+....+.+|.+.++++.....+.
T Consensus 202 ~~~il~~~~-------~~~----~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 202 LEDILTKRA-------QMA----FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHH-------HHH----BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------Hhh----ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999997522 111 1134578999999999864333668888888877654433
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.31 E-value=3.7e-12 Score=116.65 Aligned_cols=95 Identities=26% Similarity=0.395 Sum_probs=61.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccccc-cccccchhhHHHHHHHhhchhHHH-hcC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQA-GYVGEDAESVLYKLLAAADFDVEA-AQR 229 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~~-gy~G~~~~~~l~~l~~~~~~~~~~-~~~ 229 (510)
.+.+++|+||||||||++|+.+++.+ +.+++.+++..+... .+.+.. ...+..++... .. ..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~ 116 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF-EERLKSILKEV----QDAEGQ 116 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHH-HHHHHHHHHHH----HHTTTS
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHH-HHHHHHHHHHH----HhcCCc
Confidence 34689999999999999999999987 677888887766421 122221 22333333322 22 245
Q ss_pred cEEEEcchhhhhhhcc-CCCCCCCchhhHHHHHHHHhh
Q 038067 230 GIVYIDEVDKIVKAES-RNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~-~~~~~~~~~~~v~~~LL~~le 266 (510)
.||+|||++.+..... .... ..+++.|+.+++
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~-----~~~~~~l~~~~~ 149 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGA-----LDAGNILKPMLA 149 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTS-----CCTHHHHHHHHH
T ss_pred eEEEEeCHHHhcccccccccc-----hHHHHHHHHHHh
Confidence 6999999999874322 1111 236888888886
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.29 E-value=3.1e-11 Score=123.15 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=103.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC------------------------eEEEeccccccccccccchhhHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP------------------------FTITDATALTQAGYVGEDAESVLYKLL 217 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p------------------------~~~~~~s~l~~~gy~G~~~~~~l~~l~ 217 (510)
.++.+||+||+|+|||++|+++|+.+..+ +..++...- .... . ...++.++
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~~~~--~-i~~ir~l~ 97 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--KNTL--G-VDAVREVT 97 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--CSSB--C-HHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--CCCC--C-HHHHHHHH
Confidence 34569999999999999999999988432 222222100 0000 1 12344554
Q ss_pred HhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCcee
Q 038067 218 AAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILF 297 (510)
Q Consensus 218 ~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilf 297 (510)
+.....-......|++|||+|++... .++.|++.||. ...+++|
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe-----------------------p~~~~~~ 141 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE-----------------------PPAETWF 141 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS-----------------------CCTTEEE
T ss_pred HHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC-----------------------CCCCeEE
Confidence 44321111245679999999998765 68999999983 1235566
Q ss_pred ecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHH
Q 038067 298 ICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNED 377 (510)
Q Consensus 298 I~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~e 377 (510)
|++++.. ..+.|.+++|+. ++.|.+++.+
T Consensus 142 Il~t~~~--------------------------------------------------~~l~~ti~SRc~-~~~~~~~~~~ 170 (334)
T 1a5t_A 142 FLATREP--------------------------------------------------ERLLATLRSRCR-LHYLAPPPEQ 170 (334)
T ss_dssp EEEESCG--------------------------------------------------GGSCHHHHTTSE-EEECCCCCHH
T ss_pred EEEeCCh--------------------------------------------------HhCcHHHhhcce-eeeCCCCCHH
Confidence 6665510 126788999996 5799999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHH
Q 038067 378 QLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALL 433 (510)
Q Consensus 378 el~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~i 433 (510)
++.+++... . .+++++++.+++.+ +++.|.+.+.+
T Consensus 171 ~~~~~L~~~---------------~---~~~~~~~~~l~~~s---~G~~r~a~~~l 205 (334)
T 1a5t_A 171 YAVTWLSRE---------------V---TMSQDALLAALRLS---AGSPGAALALF 205 (334)
T ss_dssp HHHHHHHHH---------------C---CCCHHHHHHHHHHT---TTCHHHHHHTT
T ss_pred HHHHHHHHh---------------c---CCCHHHHHHHHHHc---CCCHHHHHHHh
Confidence 998888631 0 46888988888875 45566655544
No 83
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.27 E-value=1.3e-11 Score=139.32 Aligned_cols=152 Identities=26% Similarity=0.336 Sum_probs=93.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGI 231 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~V 231 (510)
.+.|+||+||||||||++|+++|+.+ +.+++.+++ ...|.|.. +..+..++... ....++|
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----g~~~~G~~-e~~l~~~~~~~----~~~~~~i 270 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----GTKYRGEF-EDRLKKVMDEI----RQAGNII 270 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHH----HTCCCCE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----cccccchH-HHHHHHHHHHH----HhcCCEE
Confidence 45789999999999999999999997 678888887 23366654 45566666554 3356789
Q ss_pred EEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHH
Q 038067 232 VYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTIS 311 (510)
Q Consensus 232 l~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~ 311 (510)
|||| . . ...++.|+.+|+. .++.+|+++|..++.+.+
T Consensus 271 LfiD-----~-~-----------~~~~~~L~~~l~~-------------------------~~v~~I~at~~~~~~~~~- 307 (758)
T 3pxi_A 271 LFID-----A-A-----------IDASNILKPSLAR-------------------------GELQCIGATTLDEYRKYI- 307 (758)
T ss_dssp EEEC-----C--------------------CCCTTS-------------------------SSCEEEEECCTTTTHHHH-
T ss_pred EEEc-----C-c-----------hhHHHHHHHHHhc-------------------------CCEEEEeCCChHHHHHHh-
Confidence 9999 1 1 0267888888862 134556666533221111
Q ss_pred hhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHH
Q 038067 312 ERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALG 391 (510)
Q Consensus 312 ~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~ 391 (510)
.+.|.|.+||. +|.|.+++.+++.+|++..+
T Consensus 308 --------------------------------------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~---- 338 (758)
T 3pxi_A 308 --------------------------------------------EKDAALERRFQ-PIQVDQPSVDESIQILQGLR---- 338 (758)
T ss_dssp --------------------------------------------TTCSHHHHSEE-EEECCCCCHHHHHHHHHHTT----
T ss_pred --------------------------------------------hccHHHHhhCc-EEEeCCCCHHHHHHHHHHHH----
Confidence 26789999995 58999999999999997422
Q ss_pred HHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 392 RQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 392 ~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
..|. ....+.++++++..+++.+
T Consensus 339 ~~~~-----~~~~~~i~~~al~~~~~~s 361 (758)
T 3pxi_A 339 DRYE-----AHHRVSITDDAIEAAVKLS 361 (758)
T ss_dssp TTSG-----GGSSCSCCHHHHHHHHHHH
T ss_pred HHHH-----HhcCCCCCHHHHHHHHHHh
Confidence 1111 1234457888888777654
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.25 E-value=1.1e-11 Score=139.87 Aligned_cols=169 Identities=23% Similarity=0.344 Sum_probs=108.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----------CCCeEEEecccccc-ccccccchhhHHHHHHHhhchhHHHhcCc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----------NVPFTITDATALTQ-AGYVGEDAESVLYKLLAAADFDVEAAQRG 230 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----------~~p~~~~~~s~l~~-~gy~G~~~~~~l~~l~~~~~~~~~~~~~~ 230 (510)
.+.++||+||||||||++|+++|+.+ +.+++.+++..+.. ..|.|.. +..+..++... ....++
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~-e~~l~~~~~~~----~~~~~~ 280 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQL----EQDTNS 280 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCH-HHHHHHHHHHH----SSSSCE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchH-HHHHHHHHHHH----HhcCCe
Confidence 45789999999999999999999987 55677788777653 2355543 45555555443 234578
Q ss_pred EEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHH
Q 038067 231 IVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTI 310 (510)
Q Consensus 231 Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i 310 (510)
||||||++.+....... .....+++.|..+++. .++.+|++++..++
T Consensus 281 iL~IDEi~~l~~~~~~~----~~~~~~~~~L~~~l~~-------------------------~~~~~I~at~~~~~---- 327 (758)
T 1r6b_X 281 ILFIDEIHTIIGAGAAS----GGQVDAANLIKPLLSS-------------------------GKIRVIGSTTYQEF---- 327 (758)
T ss_dssp EEEETTTTTTTTSCCSS----SCHHHHHHHHSSCSSS-------------------------CCCEEEEEECHHHH----
T ss_pred EEEEechHHHhhcCCCC----cchHHHHHHHHHHHhC-------------------------CCeEEEEEeCchHH----
Confidence 99999999987543211 1122355666666541 23455555552110
Q ss_pred HhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHH
Q 038067 311 SERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNAL 390 (510)
Q Consensus 311 ~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l 390 (510)
.. .....|.|.+||+ .+.|.+++.++..+|+.. +
T Consensus 328 ---------------------------------~~--------~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~----l 361 (758)
T 1r6b_X 328 ---------------------------------SN--------IFEKDRALARRFQ-KIDITEPSIEETVQIING----L 361 (758)
T ss_dssp ---------------------------------HC--------CCCCTTSSGGGEE-EEECCCCCHHHHHHHHHH----H
T ss_pred ---------------------------------hh--------hhhcCHHHHhCce-EEEcCCCCHHHHHHHHHH----H
Confidence 00 0114578999998 579999999999999975 3
Q ss_pred HHHHHHHHhcCCceeeeCHHHHHHHHHhh
Q 038067 391 GRQYKKMFSMNNVKLHFTDDALRLIAKKA 419 (510)
Q Consensus 391 ~~~~~~~~~~~~~~l~is~~al~~La~~~ 419 (510)
...|.. ...+.++++++..++..+
T Consensus 362 ~~~~~~-----~~~v~~~~~al~~~~~~s 385 (758)
T 1r6b_X 362 KPKYEA-----HHDVRYTAKAVRAAVELA 385 (758)
T ss_dssp HHHHHH-----HHTCCCCHHHHHHHHHHH
T ss_pred HHHHHH-----hcCCCCCHHHHHHHHHHh
Confidence 333332 123557899998888764
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=3.6e-11 Score=121.52 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=87.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh------CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV------NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l------~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
.++||+||||+|||++|+++|+.+ ...+..++++.- ..+ -..++.++..+...-......|++|||+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~---id~ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIG---IDDIRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBC---HHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CCC---HHHHHHHHHHHhhccccCCceEEEeccH
Confidence 589999999999999999999864 345666665421 111 1224444443321111234579999999
Q ss_pred hhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhcccC
Q 038067 238 DKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQDS 317 (510)
Q Consensus 238 dkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~~ 317 (510)
|.|... .+++||+.||. ...+++||++++..
T Consensus 92 d~lt~~-------------a~naLLk~LEe-----------------------p~~~t~fIl~t~~~------------- 122 (305)
T 2gno_A 92 ERMTQQ-------------AANAFLKALEE-----------------------PPEYAVIVLNTRRW------------- 122 (305)
T ss_dssp GGBCHH-------------HHHHTHHHHHS-----------------------CCTTEEEEEEESCG-------------
T ss_pred HHhCHH-------------HHHHHHHHHhC-----------------------CCCCeEEEEEECCh-------------
Confidence 999765 69999999983 12455666655410
Q ss_pred CCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 318 SIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 318 ~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
..+.|.+.+| ++.|.+++.+++.+.+..
T Consensus 123 -------------------------------------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~ 150 (305)
T 2gno_A 123 -------------------------------------HYLLPTIKSR---VFRVVVNVPKEFRDLVKE 150 (305)
T ss_dssp -------------------------------------GGSCHHHHTT---SEEEECCCCHHHHHHHHH
T ss_pred -------------------------------------HhChHHHHce---eEeCCCCCHHHHHHHHHH
Confidence 1377899999 789999999999998875
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.98 E-value=3.3e-09 Score=109.84 Aligned_cols=193 Identities=21% Similarity=0.192 Sum_probs=109.6
Q ss_pred CceEEE--EccCCChHHHHHHHHHHHh---------CCCeEEEeccccccc-----------cc----cccchhhHHHHH
Q 038067 163 KSNVLL--MGPTGSGKTLLAKTLARIV---------NVPFTITDATALTQA-----------GY----VGEDAESVLYKL 216 (510)
Q Consensus 163 ~~~vLL--~GPpGtGKT~lAr~lA~~l---------~~p~~~~~~s~l~~~-----------gy----~G~~~~~~l~~l 216 (510)
+.++++ +||+|+|||++++.+++.+ +.+++.+++...... |. .+.+....+..+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 129 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL 129 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 457999 9999999999999999876 456778887532211 00 011111111111
Q ss_pred HHhhchhHHHhcCcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEc--CC
Q 038067 217 LAAADFDVEAAQRGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDT--KD 294 (510)
Q Consensus 217 ~~~~~~~~~~~~~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~t--sn 294 (510)
.... .....+.||+|||++.+..... ....++..|+++++... .+. ++
T Consensus 130 ~~~l---~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~~~~~~~--------------------~~~~~~~ 179 (412)
T 1w5s_A 130 VDNL---YVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLRVHEEIP--------------------SRDGVNR 179 (412)
T ss_dssp HHHH---HHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHTHHHHSC--------------------CTTSCCB
T ss_pred HHHH---HhcCCeEEEEEeCHHHHhhccC-------cchHHHHHHHHHHHhcc--------------------cCCCCce
Confidence 1110 0123467999999999864210 01136666777765100 001 45
Q ss_pred ceeecCCCccchHHHHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCC
Q 038067 295 ILFICGGAFVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSAL 374 (510)
Q Consensus 295 ilfI~tg~~~~l~~~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~L 374 (510)
+.+|++++..++.+.+. . ..+.+.+|+...+.|.||
T Consensus 180 v~lI~~~~~~~~~~~l~-------------------------------------------~-~~~~~~~~~~~~i~l~~l 215 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMR-------------------------------------------E-KIPQVESQIGFKLHLPAY 215 (412)
T ss_dssp EEEEEEEEETHHHHHHH-------------------------------------------H-HCHHHHTTCSEEEECCCC
T ss_pred EEEEEEeccccHHHHHh-------------------------------------------h-hcchhhhhcCCeeeeCCC
Confidence 56666655222111110 0 013455566555899999
Q ss_pred CHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCC---CChhHHHHHHHHHHHHH
Q 038067 375 NEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKN---TGARGLRALLENILTEA 440 (510)
Q Consensus 375 s~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~---~gaR~L~~~ie~~l~~~ 440 (510)
+.+++.+++...+. .. .....+++++++.+++.+.... +.+|.+..++...+..+
T Consensus 216 ~~~e~~~ll~~~~~-------~~----~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 216 KSRELYTILEQRAE-------LG----LRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CHHHHHHHHHHHHH-------HH----BCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-------hc----CCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 99999999874221 11 1123478999999999863222 56888888877655433
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.73 E-value=1.4e-08 Score=126.48 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=96.5
Q ss_pred cCceEEEEccCCChHHHHHHH-HHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhc-------hhH----HHhcC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKT-LARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAAD-------FDV----EAAQR 229 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~-lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~-------~~~----~~~~~ 229 (510)
.+.++||+||||||||++|+. +++..+.+++.++++..+.+ ..+...+...- +.+ .....
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~ 1337 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTLLPKSDIKN 1337 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEEEEBSSSSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccccCCCCCce
Confidence 568999999999999999954 55544778888888776632 22333332210 000 01234
Q ss_pred cEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHH
Q 038067 230 GIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKT 309 (510)
Q Consensus 230 ~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~ 309 (510)
.||||||++.....+ . +...+.+.|.+++|.+.+... ... ..+...++.||+|.|..+
T Consensus 1338 ~VlFiDEinmp~~d~---y----g~q~~lelLRq~le~gg~yd~----------~~~-~~~~~~~i~lIaA~Npp~---- 1395 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDK---Y----GSQNVVLFLRQLMEKQGFWKT----------PEN-KWVTIERIHIVGACNPPT---- 1395 (2695)
T ss_dssp EEEEEETTTCSCCCS---S----SCCHHHHHHHHHHHTSSEECT----------TTC-CEEEEESEEEEEEECCTT----
T ss_pred EEEEecccccccccc---c----CchhHHHHHHHHHhcCCEEEc----------CCC-cEEEecCEEEEEecCCCc----
Confidence 699999998632221 0 112478899999983222211 111 123347888888877321
Q ss_pred HHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchh
Q 038067 310 ISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPK 387 (510)
Q Consensus 310 i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~ 387 (510)
+. -+..+.|.|++|| .++.++.++.+++.+|+...+
T Consensus 1396 ----------~g-------------------------------GR~~l~~rllRrf-~vi~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1396 ----------DP-------------------------------GRIPMSERFTRHA-AILYLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp ----------ST-------------------------------TCCCCCHHHHTTE-EEEECCCCTTTHHHHHHHHHH
T ss_pred ----------cC-------------------------------CCccCChhhhhee-eEEEeCCCCHHHHHHHHHHHH
Confidence 00 0123788999999 667999999999999998643
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.66 E-value=8.6e-07 Score=89.07 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=28.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
..++++||+|+|||++++.+++..+ ++.+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 4799999999999999999999875 67777654
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.54 E-value=2.3e-08 Score=92.14 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=44.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccccccccccccchhhHHHHHHHhhc---hhHHHhcCcEEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATALTQAGYVGEDAESVLYKLLAAAD---FDVEAAQRGIVYI 234 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~---~~~~~~~~~Vl~i 234 (510)
.+.+++|+||+|||||+++++++..+ +..++.+++.++... +...+.... ..-....+.+|+|
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~llil 106 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR----------LKHLMDEGKDTKFLKTVLNSPVLVL 106 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH----------HHHHHHHTCCSHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH----------HHHHhcCchHHHHHHHhcCCCEEEE
Confidence 34689999999999999999999887 556666666554321 011111000 0001235689999
Q ss_pred cchhhh
Q 038067 235 DEVDKI 240 (510)
Q Consensus 235 DEidkl 240 (510)
||++..
T Consensus 107 DE~~~~ 112 (180)
T 3ec2_A 107 DDLGSE 112 (180)
T ss_dssp ETCSSS
T ss_pred eCCCCC
Confidence 999853
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.42 E-value=1.8e-06 Score=107.88 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=53.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
...+.++.||+|||||++++.+|+.+|.+++.++|++-... ..+...+..+ ...+++++||||+++.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~--------~~lg~~~~g~-----~~~Gaw~~~DE~nr~~ 710 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY--------QVLSRLLVGI-----TQIGAWGCFDEFNRLD 710 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSC
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh--------hHhhHHHHHH-----HhcCCEeeehhhhhcC
Confidence 45689999999999999999999999999999999976542 1222222221 1346899999999977
Q ss_pred hh
Q 038067 242 KA 243 (510)
Q Consensus 242 ~~ 243 (510)
..
T Consensus 711 ~e 712 (2695)
T 4akg_A 711 EK 712 (2695)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 91
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.32 E-value=1.3e-06 Score=88.86 Aligned_cols=169 Identities=14% Similarity=0.105 Sum_probs=104.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CC-CeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcch
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NV-PFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEV 237 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~-p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEi 237 (510)
..+.+||+||.|+||++.++.+++.+ +. ++..+... + ..+. +.+.......-..+..-|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~--~~~~----~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-----P--NTDW----NAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-----T--TCCH----HHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-----C--CCCH----HHHHHHhcCcCCccCCeEEEEECC
Confidence 34689999999999999999999876 21 22111110 0 0122 233322211111245679999999
Q ss_pred hh-hhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHHHHHhhccc
Q 038067 238 DK-IVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEKTISERRQD 316 (510)
Q Consensus 238 dk-l~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~~i~~~~~~ 316 (510)
+. +... .++.|++.+|. ...+++||++++..+
T Consensus 86 ~~kl~~~-------------~~~aLl~~le~-----------------------p~~~~~~il~~~~~~----------- 118 (343)
T 1jr3_D 86 ENGPNAA-------------INEQLLTLTGL-----------------------LHDDLLLIVRGNKLS----------- 118 (343)
T ss_dssp SSCCCTT-------------HHHHHHHHHTT-----------------------CBTTEEEEEEESCCC-----------
T ss_pred CCCCChH-------------HHHHHHHHHhc-----------------------CCCCeEEEEEcCCCC-----------
Confidence 98 7543 69999999983 112333444332000
Q ss_pred CCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhchhHHHHHHHHH
Q 038067 317 SSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLMEPKNALGRQYKK 396 (510)
Q Consensus 317 ~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~~~~~l~~~~~~ 396 (510)
+.+ ....+.+.+.+|. .++.|.+++.+++.+.+...
T Consensus 119 --------------------------------~~~-~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~---------- 154 (343)
T 1jr3_D 119 --------------------------------KAQ-ENAAWFTALANRS-VQVTCQTPEQAQLPRWVAAR---------- 154 (343)
T ss_dssp --------------------------------TTT-TTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHH----------
T ss_pred --------------------------------hhh-HhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHH----------
Confidence 000 0011445667777 45799999999988877641
Q ss_pred HHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 038067 397 MFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILT 438 (510)
Q Consensus 397 ~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~ 438 (510)
+...| +.+++++++.|++.+ +++.|.+.+.++++..
T Consensus 155 -~~~~g--~~i~~~a~~~l~~~~---~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 155 -AKQLN--LELDDAANQVLCYCY---EGNLLALAQALERLSL 190 (343)
T ss_dssp -HHHTT--CEECHHHHHHHHHSS---TTCHHHHHHHHHHHHH
T ss_pred -HHHcC--CCCCHHHHHHHHHHh---chHHHHHHHHHHHHHH
Confidence 12234 568999999999975 6678999999998764
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.29 E-value=9.8e-07 Score=79.38 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=52.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVD 238 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEid 238 (510)
+...++|+||+|+|||+|+++++..+ +.+.+.++..++... . + .....+|+|||++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------~----~---------~~~~~lLilDE~~ 93 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------D----A---------AFEAEYLAVDQVE 93 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------G----G---------GGGCSEEEEESTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------H----H---------HhCCCEEEEeCcc
Confidence 44689999999999999999999988 666888887776532 0 0 1245799999999
Q ss_pred hhhhhccCCCCCCCchhhHHHHHHHHhh
Q 038067 239 KIVKAESRNNGRDVSGEGVQQALLKMLE 266 (510)
Q Consensus 239 kl~~~~~~~~~~~~~~~~v~~~LL~~le 266 (510)
.+... .++.|+.+++
T Consensus 94 ~~~~~-------------~~~~l~~li~ 108 (149)
T 2kjq_A 94 KLGNE-------------EQALLFSIFN 108 (149)
T ss_dssp CCCSH-------------HHHHHHHHHH
T ss_pred ccChH-------------HHHHHHHHHH
Confidence 86543 2666667665
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=4.4e-06 Score=83.92 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=31.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
..++++||+|+|||++++.+++.++.+++.+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 479999999999999999999998777888887653
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.24 E-value=5.7e-07 Score=84.05 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=32.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALT 200 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~ 200 (510)
.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 689999999999999999999988 6788888887654
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.22 E-value=1.5e-06 Score=109.37 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=94.9
Q ss_pred cCceEEEEccCCChHHHHHHH-HHHHhCCCeEEEeccccccccccccchhhHHHHHHHhh-c-------hhHH----Hhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKT-LARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAA-D-------FDVE----AAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~-lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~-~-------~~~~----~~~ 228 (510)
...++||+||||||||++++. +++..+.+++.++++.-+.+ ..+...+... . +.+- ...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk 1374 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETVLRPTQLGK 1374 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEEEEESSTTC
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcccCCCcCCc
Confidence 568999999999999977654 44444667888888876643 2222332210 0 1000 122
Q ss_pred CcEEEEcchhhhhhhccCCCCCCCchhhHHHHHHHHhhCceeeeccCCCCCCCCCCCCcEEEEcCCceeecCCCccchHH
Q 038067 229 RGIVYIDEVDKIVKAESRNNGRDVSGEGVQQALLKMLEGTVVNVPIPDNGPRKHPRGDNIPIDTKDILFICGGAFVGLEK 308 (510)
Q Consensus 229 ~~Vl~iDEidkl~~~~~~~~~~~~~~~~v~~~LL~~leg~~~~i~~~~~g~~~~~~~~~i~i~tsnilfI~tg~~~~l~~ 308 (510)
..|+||||++.-.... . +...+...|.++||.+.+..+ . +.-.+...++.||+|.|..+
T Consensus 1375 ~~VlFiDDiNmp~~D~---y----GtQ~~ielLrqlld~~g~yd~--~---------~~~~~~i~d~~~vaamnPp~--- 1433 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDK---Y----GTQRVITFIRQMVEKGGFWRT--S---------DHTWIKLDKIQFVGACNPPT--- 1433 (3245)
T ss_dssp EEEEEETTTTCCCCCT---T----SCCHHHHHHHHHHHHSEEEET--T---------TTEEEEESSEEEEEEECCTT---
T ss_pred eEEEEecccCCCCccc---c----ccccHHHHHHHHHHcCCeEEC--C---------CCeEEEecCeEEEEEcCCCC---
Confidence 3599999999632211 1 112488999999993333322 1 11234557888888866321
Q ss_pred HHHhhcccCCCCcCcccccccccCCCchhhhhhhhhhccCchhhhhcCCchhhhcccCceEecCCCCHHHHHHHHhc
Q 038067 309 TISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLME 385 (510)
Q Consensus 309 ~i~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dl~~~~~~Pefl~R~~~iv~f~~Ls~eel~~Il~~ 385 (510)
.+ -+..+.|.|++||.. +.++.++.+++..|...
T Consensus 1434 ------------~g------------------------------Gr~~l~~Rf~r~F~v-i~i~~ps~esL~~If~t 1467 (3245)
T 3vkg_A 1434 ------------DA------------------------------GRVQLTHRFLRHAPI-LLVDFPSTSSLTQIYGT 1467 (3245)
T ss_dssp ------------ST------------------------------TCCCCCHHHHTTCCE-EECCCCCHHHHHHHHHH
T ss_pred ------------CC------------------------------CCccCCHHHHhhceE-EEeCCCCHHHHHHHHHH
Confidence 00 012378899999987 59999999999999864
No 96
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.17 E-value=5.1e-06 Score=81.89 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=23.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+.+++|+||||||||++|++||+.+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 46799999999999999999999863
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.04 E-value=3.2e-06 Score=80.18 Aligned_cols=78 Identities=12% Similarity=0.290 Sum_probs=49.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhhh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~~ 242 (510)
+.+++|+||||||||++|.++|+.+...++.+..+. ..+ .++. .....|++|||++....
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~---s~f-----------~l~~------l~~~kIiiLDEad~~~~ 117 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---SHF-----------WLEP------LTDTKVAMLDDATTTCW 117 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---SCG-----------GGGG------GTTCSSEEEEEECHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc---chh-----------hhcc------cCCCCEEEEECCCchhH
Confidence 357999999999999999999999854332211110 000 0000 01235999999986432
Q ss_pred hccCCCCCCCchhhHHHHHHHHhhCceeee
Q 038067 243 AESRNNGRDVSGEGVQQALLKMLEGTVVNV 272 (510)
Q Consensus 243 ~~~~~~~~~~~~~~v~~~LL~~leg~~~~i 272 (510)
. .+...+..+|+|..+.+
T Consensus 118 ~------------~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 118 T------------YFDTYMRNALDGNPISI 135 (212)
T ss_dssp H------------HHHHHCHHHHHTCCEEE
T ss_pred H------------HHHHHHHHHhCCCcccH
Confidence 2 25678888999876554
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.94 E-value=2.8e-06 Score=85.52 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=32.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC----CCeEEEeccccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN----VPFTITDATALT 200 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~----~p~~~~~~s~l~ 200 (510)
..+++|+||||||||+||.++|+.+. .+++.+++.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 47899999999999999999998763 678778776654
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.85 E-value=1.2e-05 Score=81.31 Aligned_cols=74 Identities=20% Similarity=0.314 Sum_probs=43.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC--eEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP--FTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDK 239 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p--~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidk 239 (510)
+++.++|+||||||||++|..+|...+.+ |+.+...+.... |. .+.+..+..+.+. +.. .+ +|+|||++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~-~~-~~le~~l~~i~~~----l~~-~~-LLVIDsI~a 193 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG-YN-TDFNVFVDDIARA----MLQ-HR-VIVIDSLKN 193 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTT-CB-CCHHHHHHHHHHH----HHH-CS-EEEEECCTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhh-hh-cCHHHHHHHHHHH----Hhh-CC-EEEEecccc
Confidence 44568999999999999999999876544 555522222111 21 2223333333222 122 23 999999999
Q ss_pred hhhh
Q 038067 240 IVKA 243 (510)
Q Consensus 240 l~~~ 243 (510)
+...
T Consensus 194 L~~~ 197 (331)
T 2vhj_A 194 VIGA 197 (331)
T ss_dssp TC--
T ss_pred cccc
Confidence 8643
No 100
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.76 E-value=0.00028 Score=89.26 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=51.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccccccccccchhhHHHHHHHhhchhHHHhcCcEEEEcchhhhh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALTQAGYVGEDAESVLYKLLAAADFDVEAAQRGIVYIDEVDKIV 241 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~~~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl~iDEidkl~ 241 (510)
...+..+.||+|||||++++.+|+.+|.+++.++|++-... ..+...+.-. ...++..++|||+++.
T Consensus 603 ~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~--------~~~g~i~~G~-----~~~GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 603 SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL--------QAMSRIFVGL-----CQCGAWGCFDEFNRLE 669 (3245)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH--------HHHHHHHHHH-----HHHTCEEEEETTTSSC
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH--------HHHHHHHhhH-----hhcCcEEEehhhhcCC
Confidence 34567899999999999999999999999999999876532 1222222211 1346889999999986
Q ss_pred hh
Q 038067 242 KA 243 (510)
Q Consensus 242 ~~ 243 (510)
..
T Consensus 670 ~~ 671 (3245)
T 3vkg_A 670 ER 671 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.74 E-value=4.5e-05 Score=91.81 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=65.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccccc-----------ccccccc---hhhHHHHHHHhhchhH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQ-----------AGYVGED---AESVLYKLLAAADFDV 224 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~-----------~gy~G~~---~~~~l~~l~~~~~~~~ 224 (510)
.++.+|++||||||||++|++++... +-|.+.++.....+ ..|+++. .+..++.++..+
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a---- 1156 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA---- 1156 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH----
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH----
Confidence 34569999999999999999998766 56777777665331 1244441 245565555443
Q ss_pred HHhcCcEEEEcchhhhhhhcc---CCCCCCC-chhhHHHHHHHHhhC
Q 038067 225 EAAQRGIVYIDEVDKIVKAES---RNNGRDV-SGEGVQQALLKMLEG 267 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~~~~---~~~~~~~-~~~~v~~~LL~~leg 267 (510)
++..+++||+||++.+.+.+. ....++. ...++.+.+|.-|++
T Consensus 1157 r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A 1157 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHh
Confidence 567889999999999986632 1122221 112356666666653
No 102
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.53 E-value=5.1e-05 Score=69.49 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=30.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
+.+++|+||||||||++|+.||+.++.+++..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH
Confidence 4689999999999999999999999988876543
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.53 E-value=5.5e-05 Score=68.69 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=31.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
+..++|+|+||+||||+|+.|++.++.+++.++...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 3579999999999999999999999989887665433
No 104
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.45 E-value=0.00034 Score=64.50 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPF 191 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~ 191 (510)
++.|+||+|+||||+++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 588999999999999999999986443
No 105
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=9.2e-05 Score=69.03 Aligned_cols=34 Identities=44% Similarity=0.646 Sum_probs=30.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+...++|+||||+||||+++.||+.++.+++..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 4468999999999999999999999998886554
No 106
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.33 E-value=0.00015 Score=65.11 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=28.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.++|.||||+||||+++.|++.++.+++..|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998876555
No 107
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.33 E-value=0.00012 Score=66.06 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=29.0
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+++|+|++|||||++++.||+.++.|++..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 58999999999999999999999999887544
No 108
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.29 E-value=0.00014 Score=66.60 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=28.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
..++|+|+||+|||++|+.|++.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999998876544
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.27 E-value=0.00013 Score=66.36 Aligned_cols=30 Identities=37% Similarity=0.629 Sum_probs=27.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
+++|.||||+|||++|+.||+.++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 699999999999999999999998877543
No 110
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.26 E-value=0.00058 Score=83.36 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=50.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cc-----------cchhhHHHHHHHhhchhH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VG-----------EDAESVLYKLLAAADFDV 224 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G-----------~~~~~~l~~l~~~~~~~~ 224 (510)
++.+++|+||||||||+||.+++... |.....++......+-+ .| ...+. +.+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~----~l~~~~~lv 1501 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ----ALEICDALA 1501 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHH----HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHH----HHHHHHHHH
Confidence 57899999999999999999998766 56777777665432111 11 01112 222222234
Q ss_pred HHhcCcEEEEcchhhhhh
Q 038067 225 EAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~ 242 (510)
+.....+|+|||++.+.+
T Consensus 1502 r~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHTCCSEEEESCGGGCCC
T ss_pred hcCCCCEEEEcChhHhcc
Confidence 556789999999987764
No 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.25 E-value=0.00015 Score=66.07 Aligned_cols=34 Identities=35% Similarity=0.465 Sum_probs=29.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+.+++|+|+||+|||++++.|++.++.+++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 3467999999999999999999999987765443
No 112
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00019 Score=65.85 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=29.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..++|.|+||+||||+++.|++.++.+++..|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 3467999999999999999999999988776543
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.20 E-value=0.00017 Score=65.00 Aligned_cols=30 Identities=37% Similarity=0.729 Sum_probs=26.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
..+.|+||+|+||||+++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 579999999999999999999999875543
No 114
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.18 E-value=0.00017 Score=66.38 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=28.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH-hCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI-VNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~-l~~p~~~~~ 195 (510)
.+.+++|+|+||||||++++.|++. ++.+++..|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3468999999999999999999999 676665544
No 115
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.00026 Score=65.82 Aligned_cols=34 Identities=38% Similarity=0.566 Sum_probs=29.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..++|+|+||+|||++|+.|++.++.+++..|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4457999999999999999999999998876543
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.12 E-value=0.00056 Score=63.36 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=22.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTIT 194 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~ 194 (510)
.-++++||+|+|||+++..++..+ +.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999986665443 5554443
No 117
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.11 E-value=0.0041 Score=59.60 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=29.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
.+.++++.|++|||||+++-.+|..+ |..++.++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 44689999999999999999998777 6777666653
No 118
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.10 E-value=0.00027 Score=64.91 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=29.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..++|.|+||+||||+|+.|++.++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 3457999999999999999999999987765544
No 119
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.09 E-value=0.00026 Score=64.70 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
+..++|.|+|||||||+|+.|++.++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45799999999999999999999998766443
No 120
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.08 E-value=0.00082 Score=63.22 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=45.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh--------C-CCeEEEecccccccccc----------c---cch-hhHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV--------N-VPFTITDATALTQAGYV----------G---EDA-ESVLYKLLAA 219 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l--------~-~p~~~~~~s~l~~~gy~----------G---~~~-~~~l~~l~~~ 219 (510)
+.-.|++|+||||||++|..++... | .+++..++.++.. ++. . +.. ...+.+.+.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKI-PHTYIETDAKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCS-CCEEEECCTTTCSSCCSSCEEGGGHHHHTT-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccc-cccccchhhhhccccCcccccHHHHHHHhh-
Confidence 3578999999999999998865432 4 6776677665542 121 0 000 011111110
Q ss_pred hchhHHHhcCcEEEEcchhhhhhh
Q 038067 220 ADFDVEAAQRGIVYIDEVDKIVKA 243 (510)
Q Consensus 220 ~~~~~~~~~~~Vl~iDEidkl~~~ 243 (510)
.....+.||+|||++.+.+.
T Consensus 83 ----~~~~~~~vliIDEAq~l~~~ 102 (199)
T 2r2a_A 83 ----KPENIGSIVIVDEAQDVWPA 102 (199)
T ss_dssp ----SGGGTTCEEEETTGGGTSBC
T ss_pred ----ccccCceEEEEEChhhhccC
Confidence 01234789999999998543
No 121
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.07 E-value=0.00027 Score=63.60 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
..++|+|+||+|||++|+.|++.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35999999999999999999999988766433
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.07 E-value=0.0029 Score=60.08 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=27.1
Q ss_pred cCceEEEEccCCChHHHHHHHHH--HH--hCCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLA--RI--VNVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA--~~--l~~p~~~~~~s 197 (510)
++..+.|+||+|+|||++++.++ .. .+...+.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 45679999999999999999998 43 24555555543
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.05 E-value=0.00028 Score=62.96 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=25.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
..++|.||||+||||+|+.| +.++.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36899999999999999999 8888876554
No 124
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00037 Score=64.78 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=28.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+..++|.|++|+||||+|+.|++.++.+++..|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 457999999999999999999999987766544
No 125
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.05 E-value=0.00035 Score=62.68 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=27.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.++|+|++|+|||++|+.|++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999998876544
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.05 E-value=0.00032 Score=66.19 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=28.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.+..++|.|+||+||||+|+.||+.++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 346799999999999999999999998776554
No 127
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.04 E-value=0.00037 Score=67.79 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=29.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
.++++||||||||++|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 589999999999999999999999888777653
No 128
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.02 E-value=0.00025 Score=64.77 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=26.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
+..++|+|+||+||||+++.|++.++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3579999999999999999999999866543
No 129
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.00 E-value=0.00037 Score=64.12 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.+..++|.|+||+|||++|+.|++.++.+++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345799999999999999999999998655443
No 130
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.99 E-value=0.00036 Score=65.91 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=28.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
...++|.|+||+||||+|+.||+.++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35799999999999999999999998877655
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.99 E-value=0.00033 Score=64.23 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=32.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
++..+.|+||||+||||+++.|+..++.+.+.++..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34579999999999999999999988778778876654
No 132
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=96.98 E-value=0.0034 Score=51.76 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHhchhHHHHHHHHHHHhcCCceeeeCHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHHHhcCcCCCCCC
Q 038067 372 SALNEDQLVQVLMEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGT 451 (510)
Q Consensus 372 ~~Ls~eel~~Il~~~~~~l~~~~~~~~~~~~~~l~is~~al~~La~~~~~~~~gaR~L~~~ie~~l~~~l~~~~~~~~~~ 451 (510)
+.++++|...|.+++ |+.+..+........+.++++++..|.+. |+.+.|.|+|.+.|.+++..+..++....
T Consensus 1 sGYt~~EK~~IAk~~---LiPkql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~~~--- 73 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRH---LLPKQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLLDK--- 73 (94)
T ss_dssp CCCCHHHHHHHHHHT---HHHHHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTCT---
T ss_pred CCCCHHHHHHHHHHh---ccHHHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHHcC---
Confidence 357899999999985 44433333344556799999999999997 99999999999999999999988876411
Q ss_pred CcccEEEEcccccc
Q 038067 452 SSVNAVLVDKEAVG 465 (510)
Q Consensus 452 ~~i~~~~v~~~~v~ 465 (510)
....+.|+.+.+.
T Consensus 74 -~~~~v~v~~~~l~ 86 (94)
T 1qzm_A 74 -SLKHIEINGDNLH 86 (94)
T ss_dssp -TCCCEEECTTTTH
T ss_pred -CCCCeeECHHHHH
Confidence 1234667766554
No 133
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.96 E-value=0.00042 Score=65.04 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.3
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+++|+||||+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 5899999999999999999999987776553
No 134
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00034 Score=63.85 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=23.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
..++|.||||+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999886
No 135
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.96 E-value=0.0004 Score=63.32 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
+..++|.|+||+|||++|+.|++.++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35799999999999999999999998766544
No 136
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.00046 Score=64.68 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=27.3
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.++|+||||+||||+|+.|++.++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHH
Confidence 5899999999999999999999988776553
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.95 E-value=0.00049 Score=62.28 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=27.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
++..++|+||+|+|||++++.|++.+|.+++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34579999999999999999999998765543
No 138
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.93 E-value=0.00047 Score=65.89 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.+..++|.|+||+|||++|+.||+.++.+++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346899999999999999999999998776654
No 139
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00044 Score=62.81 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=23.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
+..++|.|+||+||||+|+.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999998876
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.0012 Score=62.50 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=29.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH--h-------CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI--V-------NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~--l-------~~p~~~~~~s~ 198 (510)
++..++|+||||+|||++++.++.. + +.+.+.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4467999999999999999999985 3 34567777655
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.90 E-value=0.0041 Score=58.10 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++..++|+||+|+|||++++.++..+ +.+++.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 44579999999999999999999655 5566665543
No 142
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.90 E-value=0.00046 Score=65.53 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=27.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
+..++|.|+||+||||+|+.|++.++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46799999999999999999999998766544
No 143
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.86 E-value=0.00029 Score=63.59 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=22.5
Q ss_pred ceEEEEccCCChHHHHHHHHHH-HhCC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR-IVNV 189 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~-~l~~ 189 (510)
..++|.||||+||||+|+.|++ .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 4699999999999999999998 4543
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.86 E-value=0.00053 Score=63.64 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=28.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..++|+|++|+|||++++.|++.++.+++..|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 3457999999999999999999999987665544
No 145
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.86 E-value=0.00054 Score=66.14 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=29.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..++|+||||+||||+|+.|++.++.+++..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~ 61 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTG 61 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecH
Confidence 4568999999999999999999999987665543
No 146
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.85 E-value=0.00098 Score=60.64 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=33.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..+.|+|++|+||||+++.|++.+ |.|++.+|...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 44679999999999999999999998 899998886544
No 147
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.85 E-value=0.003 Score=60.42 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
+..-++++||+|+|||+++..++..+ +...+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34568999999999999998887666 55666553
No 148
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.84 E-value=0.0021 Score=62.47 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=31.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHH---hCCCeEEEeccccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI---VNVPFTITDATALT 200 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~---l~~p~~~~~~s~l~ 200 (510)
+..++|+|+||+|||++|+.|++. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 357999999999999999999998 57888866665543
No 149
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.84 E-value=0.0004 Score=65.62 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=26.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
+..++|.||||+||||+++.||+.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999865543
No 150
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.83 E-value=0.00067 Score=63.76 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=27.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
+++|.|+||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999999998877665
No 151
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.82 E-value=0.0025 Score=67.31 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=22.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.++++.|++|||||+++..++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999887
No 152
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.81 E-value=0.0008 Score=63.61 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=25.4
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.++|.||||+||+|.|+.||+.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 5899999999999999999999987654
No 153
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.81 E-value=0.00075 Score=62.80 Aligned_cols=36 Identities=36% Similarity=0.581 Sum_probs=28.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
++..+.|+||+|+||||+++.|+..+|..+ ++...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 456799999999999999999999996544 444443
No 154
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.80 E-value=0.00064 Score=65.93 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=33.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l~ 200 (510)
.+..++|.||||+|||++|+.|++.++.+++.++...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 456899999999999999999999998777777776654
No 155
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.74 E-value=0.0013 Score=60.00 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=28.1
Q ss_pred eEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
.+.|+|++|+||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999998 88888766
No 156
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.73 E-value=0.00093 Score=63.75 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.++.++|.||||+||+|.|+.|++.++.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 4467889999999999999999999976543
No 157
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.72 E-value=0.00083 Score=63.26 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=26.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
..+.|+||+|+||||+++.|++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 479999999999999999999999876543
No 158
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.69 E-value=0.00091 Score=67.61 Aligned_cols=35 Identities=37% Similarity=0.536 Sum_probs=30.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
..++|+||||||||++|+.||+.++.+++.+|.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 47999999999999999999999998887777543
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.66 E-value=0.0011 Score=60.33 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=26.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhC---CCeEEEec
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVN---VPFTITDA 196 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~ 196 (510)
.++|.|+||+||||+|+.|++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 589999999999999999999885 33544443
No 160
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.65 E-value=0.00089 Score=62.12 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
.+.|+|++|+||||+++.|++ +|.+++..|.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~ 33 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDADK 33 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEccH
Confidence 589999999999999999999 8877665543
No 161
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.65 E-value=0.0033 Score=64.15 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=47.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccchh-------hHHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDAE-------SVLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~~-------~~l~~l~~~~~~~~~~~~ 228 (510)
+...++++||||+|||++|..++... +.+.+.++...-...-+ .|.+.. ..+..++......+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 45679999999999999999998655 56777777654221100 111100 011122221111122345
Q ss_pred CcEEEEcchhhhh
Q 038067 229 RGIVYIDEVDKIV 241 (510)
Q Consensus 229 ~~Vl~iDEidkl~ 241 (510)
..+|+||++..+.
T Consensus 140 ~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 140 LDIIVIDSVAALV 152 (349)
T ss_dssp CSEEEEECGGGCC
T ss_pred CCEEEEcChHhhc
Confidence 7899999999886
No 162
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.63 E-value=0.0012 Score=60.69 Aligned_cols=28 Identities=14% Similarity=0.463 Sum_probs=25.4
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.++|.|++|+||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5899999999999999999999987654
No 163
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.62 E-value=0.001 Score=66.08 Aligned_cols=38 Identities=26% Similarity=0.341 Sum_probs=30.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.+..++|.||||+||||+|+.|++.++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 45679999999999999999999988555667776444
No 164
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.61 E-value=0.0014 Score=60.95 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=30.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
++..+.|.||+|+||||+++.|+..+ |...+.++...+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 45679999999999999999999998 555446665554
No 165
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.61 E-value=0.001 Score=64.76 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=29.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+..+.|+|++|+|||++++.||+.++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 568999999999999999999999998776544
No 166
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.59 E-value=0.0011 Score=62.93 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=26.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
.++|.||||+||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998765544
No 167
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.58 E-value=0.0014 Score=60.72 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=27.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+.|.|++|+|||++++.||+.++.+++..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6999999999999999999999998776544
No 168
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.58 E-value=0.0013 Score=60.80 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=29.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh-CCCeEEEec
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV-NVPFTITDA 196 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~~ 196 (510)
+..++|.|++|+||||+++.|++.+ +.+++.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 3579999999999999999999998 577776553
No 169
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.54 E-value=0.0019 Score=59.11 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.7
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEec
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDA 196 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~ 196 (510)
+.|.|++||||||+++.|++.+ +.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 8899999999999999999999 888875543
No 170
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.49 E-value=0.0041 Score=67.74 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
....+++.||||||||+++.+++..+ +.+++.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 46789999999999999999998876 55555443
No 171
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.48 E-value=0.0014 Score=61.12 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
..+.|+|++||||||+++.|++.+|.+++..|
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 46899999999999999999999887776544
No 172
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.48 E-value=0.0046 Score=62.23 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=30.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---------CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---------NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---------~~p~~~~~~s~ 198 (510)
++..++++||||+|||++|..++... +.+.++++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44679999999999999999999765 45677777665
No 173
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.48 E-value=0.001 Score=67.61 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=30.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
..++|.||||||||+|+..||+.++.+++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 47999999999999999999999987777766554
No 174
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.48 E-value=0.0014 Score=60.36 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=27.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+..+.|+|++|+|||++++.|++. |.+++..|
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 4467999999999999999999998 77765443
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.47 E-value=0.0013 Score=61.23 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=26.0
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
.+.|+||+|+||||+++.|++ +|.+++..|
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~d 33 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDAD 33 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccchH
Confidence 589999999999999999998 888776443
No 176
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.45 E-value=0.0017 Score=62.08 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
.+..+.|+|++|+|||++++.|++.+|.+++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 55689999999999999999999999876644
No 177
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.44 E-value=0.001 Score=61.89 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=26.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.+..++|+|++||||||+++.|++.++.+.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3467999999999999999999998865443
No 178
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.42 E-value=0.0063 Score=63.28 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=28.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---------CCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---------VPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---------~p~~~~~~s~ 198 (510)
+...++|+||||+|||+|++.++-..- .+.++++...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 446799999999999999998774432 3467777654
No 179
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.41 E-value=0.0078 Score=56.29 Aligned_cols=26 Identities=46% Similarity=0.558 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+...+.|+||+|+|||++++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999865
No 180
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.0031 Score=58.34 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=24.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
+..++|.|+||+||||+|+.|++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3569999999999999999999998763
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.36 E-value=0.0095 Score=62.54 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=30.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
++..++++||+|+||||++..||..+ +..+..+++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 46789999999999999999999887 66666666553
No 182
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.36 E-value=0.01 Score=62.47 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=32.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
++..++++|++|+||||++..||..+ +..+..+++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46789999999999999999999887 667777776654
No 183
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.36 E-value=0.0025 Score=61.47 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=26.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.+..+.+.||||+|||++++.|++.++.+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 3457999999999999999999999986654
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.34 E-value=0.0026 Score=61.02 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=26.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.+..++|+||+|+||||+++.|++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3468999999999999999999999976543
No 185
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.27 E-value=0.0071 Score=61.91 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=48.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc------cc------cccchhhHHHHHHHhhchhHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA------GY------VGEDAESVLYKLLAAADFDVEA 226 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~------gy------~G~~~~~~l~~l~~~~~~~~~~ 226 (510)
+...++++||||+|||+|+..++..+ +.++++++....... |+ +-. ...+..++......+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~--~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQ--PDHGEQALEIVDELVRS 137 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEEC--CSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhh--ccCHHHHHHHHHHHhhh
Confidence 45679999999999999999998775 567778876653211 11 000 00111222222112233
Q ss_pred hcCcEEEEcchhhhhh
Q 038067 227 AQRGIVYIDEVDKIVK 242 (510)
Q Consensus 227 ~~~~Vl~iDEidkl~~ 242 (510)
....+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 4567999999988764
No 186
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0021 Score=60.40 Aligned_cols=31 Identities=32% Similarity=0.423 Sum_probs=26.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
..+.|.|++|+||||+++.|++ +|.+++..|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEcc
Confidence 5799999999999999999998 887665543
No 187
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.26 E-value=0.0023 Score=64.27 Aligned_cols=37 Identities=41% Similarity=0.620 Sum_probs=30.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
+..+++.||||+|||+||..||+.++.+++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568999999999999999999999877776665443
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.26 E-value=0.0015 Score=60.84 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
+..++|.|++|+||||+++.|++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999998753
No 189
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.25 E-value=0.0034 Score=60.55 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCe--------EEEeccccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPF--------TITDATALT 200 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~--------~~~~~s~l~ 200 (510)
.+..|.|.|++|+|||++|+.|++.++.++ +.+++.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 345799999999999999999999998763 356666654
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.25 E-value=0.0041 Score=56.81 Aligned_cols=38 Identities=32% Similarity=0.377 Sum_probs=30.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..++|.|++|+|||++++.|++.+ +.++..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 45679999999999999999999988 445656665443
No 191
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.22 E-value=0.0079 Score=61.55 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=48.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccchh-------hHHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDAE-------SVLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~~-------~~l~~l~~~~~~~~~~~~ 228 (510)
+...++++||||+|||++|..++..+ +.+.+.++...-...-+ .|.+.. .....+.......++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 45679999999999999999998765 66888888754221100 011000 001112211111223456
Q ss_pred CcEEEEcchhhhhh
Q 038067 229 RGIVYIDEVDKIVK 242 (510)
Q Consensus 229 ~~Vl~iDEidkl~~ 242 (510)
..+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 78999999998863
No 192
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.21 E-value=0.0025 Score=59.71 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
..+.|+|++|+|||++++.|++.+|.+++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46999999999999999999999987765443
No 193
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.20 E-value=0.0034 Score=60.81 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=27.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
++..+.|.||+|+||||+++.||+.+|.+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3457999999999999999999999987654
No 194
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.18 E-value=0.041 Score=51.47 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=27.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
.+..+++++++|.|||++|-.+|-.. |.++..+.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45789999999999999999988655 66766663
No 195
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.16 E-value=0.0081 Score=61.73 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=48.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccchh-------hHHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDAE-------SVLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~~-------~~l~~l~~~~~~~~~~~~ 228 (510)
+...++++||||+|||++|..++..+ +.+++.++...-...-+ .|.+.. ..+..++......++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 45679999999999999999988765 66888888764321100 111100 011122222111122345
Q ss_pred CcEEEEcchhhhhh
Q 038067 229 RGIVYIDEVDKIVK 242 (510)
Q Consensus 229 ~~Vl~iDEidkl~~ 242 (510)
..+|+||.+..+..
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 68999999998863
No 196
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.14 E-value=0.0028 Score=59.01 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..++|+||||+|||++++.|++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456799999999999999999999884
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.12 E-value=0.0086 Score=60.80 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=29.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---------CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---------NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---------~~p~~~~~~s~ 198 (510)
++..++++||||+|||++|..++... +.+.++++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44578999999999999999999863 45677777655
No 198
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.0036 Score=57.20 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..+.|+||+|+|||||++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446799999999999999999998763
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.03 E-value=0.0022 Score=59.66 Aligned_cols=34 Identities=35% Similarity=0.389 Sum_probs=26.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-CCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-NVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~ 195 (510)
++..+.++|++|+||||+++.|++.+ +.+++..|
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 34568999999999999999999987 54444333
No 200
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.03 E-value=0.0031 Score=63.49 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=28.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
..+++.||||||||+||..||+.++..++..|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4689999999999999999999987665555544
No 201
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.02 E-value=0.013 Score=56.05 Aligned_cols=35 Identities=31% Similarity=0.336 Sum_probs=28.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
..+++++||+|+|||.++..++..++.+.+.+..+
T Consensus 108 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 108 DKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp TSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 35699999999999999999998887776666544
No 202
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.00 E-value=0.0034 Score=63.80 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=27.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
..+++.||||+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 469999999999999999999999865555554
No 203
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.97 E-value=0.0084 Score=61.36 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.3
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+...++++||+|+||||+.++++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 356689999999999999999999877
No 204
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.91 E-value=0.013 Score=59.68 Aligned_cols=37 Identities=35% Similarity=0.391 Sum_probs=29.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---------CCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---------VPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---------~p~~~~~~s~ 198 (510)
+...+.|+||+|+|||+|++.++.... -..++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 456799999999999999999998872 3457777654
No 205
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.91 E-value=0.013 Score=58.57 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=29.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++..++++||+|+||||++..||..+ +..+..+++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 45679999999999999999999877 4556655554
No 206
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.91 E-value=0.0054 Score=57.39 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=31.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l 199 (510)
.+..++|.|++|+|||++++.|++.+ |.+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 44679999999999999999999987 456777775544
No 207
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.91 E-value=0.0027 Score=62.61 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=25.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh-CCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV-NVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l-~~p~~~~~ 195 (510)
..++|.|+||+||||+|+.|++.+ +.+++..|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 469999999999999999999974 55554433
No 208
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.83 E-value=0.0049 Score=64.07 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
..+++.||||+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 468999999999999999999999766555544
No 209
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.82 E-value=0.0041 Score=57.84 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=24.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++..+.|.||+|+||||+++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999986
No 210
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.81 E-value=0.0068 Score=56.77 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=27.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
..|.+.||+|||||++++.||+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 469999999999999999999999999874
No 211
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.81 E-value=0.0042 Score=57.30 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999999887
No 212
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.80 E-value=0.0045 Score=61.08 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=26.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEe
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITD 195 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~ 195 (510)
+..|.|+|++|+||||+|+.|+ .+|.+++..|
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D 106 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSD 106 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehh
Confidence 4579999999999999999999 5777665443
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.80 E-value=0.04 Score=55.66 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=24.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999887
No 214
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.79 E-value=0.0043 Score=58.07 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++.-+.|.||+|+|||++++.|++.+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445799999999999999999998874
No 215
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.79 E-value=0.017 Score=54.02 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=27.6
Q ss_pred CceEEEEccCCChHH-HHHHHHHHHh--CCCeEEEecc
Q 038067 163 KSNVLLMGPTGSGKT-LLAKTLARIV--NVPFTITDAT 197 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT-~lAr~lA~~l--~~p~~~~~~s 197 (510)
..-.+++||.|+||| .|.+++.+.. +..++.+...
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 346899999999999 8889988766 6677776644
No 216
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.77 E-value=0.0056 Score=56.43 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=26.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEEEecc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDAT 197 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s 197 (510)
+..+.|+||+|+||||+++.|+..+ |-+.++..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~--~~~~~~~~ 39 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL--AEIKISIS 39 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS--SSEEECCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC--CCeEEece
Confidence 4568999999999999999999986 34444443
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.75 E-value=0.0084 Score=60.65 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=43.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEeccc-ccc------ccccccchhhHHHHHHHhhchhHHHhcCcEE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDATA-LTQ------AGYVGEDAESVLYKLLAAADFDVEAAQRGIV 232 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~s~-l~~------~gy~G~~~~~~l~~l~~~~~~~~~~~~~~Vl 232 (510)
++..+++.||+|+||||++++++..+. .-.+.++... +.. .+|+... +...+..+..+ -...+.+|
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~gg-g~~~r~~la~a----L~~~p~il 244 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGG-NITSADCLKSC----LRMRPDRI 244 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBT-TBCHHHHHHHH----TTSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCC-ChhHHHHHHHH----hhhCCCEE
Confidence 456899999999999999999998873 2344554332 110 1232000 11222233222 12467899
Q ss_pred EEcchhh
Q 038067 233 YIDEVDK 239 (510)
Q Consensus 233 ~iDEidk 239 (510)
++||+..
T Consensus 245 ildE~~~ 251 (330)
T 2pt7_A 245 ILGELRS 251 (330)
T ss_dssp EECCCCS
T ss_pred EEcCCCh
Confidence 9999875
No 218
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.67 E-value=0.0022 Score=65.63 Aligned_cols=30 Identities=37% Similarity=0.665 Sum_probs=27.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
.+++|+||+|+|||+++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999887744
No 219
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.66 E-value=0.0036 Score=58.88 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=30.0
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.....++|.||||+|||++|..|++... +++..|.-.+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 3557799999999999999999998875 5555554443
No 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.58 E-value=0.0068 Score=56.37 Aligned_cols=26 Identities=38% Similarity=0.577 Sum_probs=22.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+..+.|+||+|+|||||++.|+..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45799999999999999999998873
No 221
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.57 E-value=0.0067 Score=55.60 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.|.||+|+||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999887
No 222
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.011 Score=55.91 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=27.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++..++++||||+|||+++..++... +.+.+.++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 44679999999999999998887654 5566666644
No 223
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.53 E-value=0.013 Score=54.41 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=30.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
++..++++||||+|||++++.++...+.+.+.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4457999999999999999999985567777777654
No 224
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.52 E-value=0.014 Score=54.22 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=29.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
.+..+.+.||+|+|||++++.|+..+ +.+++..+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 34579999999999999999999987 55666555443
No 225
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.51 E-value=0.0067 Score=55.40 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=25.6
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.+.|.||+|+||||+++.|++.++. .+.++..++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 5899999999999999999986532 244554433
No 226
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.49 E-value=0.0067 Score=56.64 Aligned_cols=27 Identities=37% Similarity=0.537 Sum_probs=24.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++..+.+.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446799999999999999999999884
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.48 E-value=0.01 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+.|+|.||||+|||+|++.|.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3599999999999999999988763
No 228
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.42 E-value=0.0089 Score=61.68 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=26.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
++..++|+||||+|||+++++++..++..++
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 4568999999999999999999998865443
No 229
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.39 E-value=0.0045 Score=64.65 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=28.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.+.-++|+|+||+|||++|+.|++.++.++ ++...+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 456799999999999999999999886544 444444
No 230
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.33 E-value=0.012 Score=64.59 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=33.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..|+|+|+||+||||+|+.|++.+ +.+++.+|...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34579999999999999999999999 999999875544
No 231
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.31 E-value=0.023 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+...++++||||+|||++|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999875
No 232
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.29 E-value=0.021 Score=69.13 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=52.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccc---cccccc-------hhhHHHHHHHhhchhHHHhc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQA---GYVGED-------AESVLYKLLAAADFDVEAAQ 228 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~---gy~G~~-------~~~~l~~l~~~~~~~~~~~~ 228 (510)
++..++|+||||+|||++|..+|..+ +.+++.++..+.... ...|.+ ....+.+++......+....
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~ 810 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 810 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccC
Confidence 56789999999999999999998766 557888877654321 001100 01122333333332334567
Q ss_pred CcEEEEcchhhhh
Q 038067 229 RGIVYIDEVDKIV 241 (510)
Q Consensus 229 ~~Vl~iDEidkl~ 241 (510)
..+|+||++..+.
T Consensus 811 ~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 811 VDVIVVDSVAALT 823 (1706)
T ss_dssp CSEEEESCSTTCC
T ss_pred CCEEEEechhhhc
Confidence 7899999999987
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.24 E-value=0.011 Score=55.40 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=24.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+.-+.|.||+|+|||+|++.|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 556799999999999999999998864
No 234
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.16 E-value=0.023 Score=53.68 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=27.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s 197 (510)
++.-++++|+||+|||++|..+|... +.+.+.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 45679999999999999998876432 5677766654
No 235
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.11 E-value=0.013 Score=54.65 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++..+.|.||+|+||||+++.|+..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445788999999999999999999873
No 236
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.07 E-value=0.12 Score=55.24 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=29.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
.+..++|+|++|+||||++..||..+ |..+..+++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 45689999999999999999999877 6777777763
No 237
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.04 E-value=0.013 Score=55.35 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+|||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44579999999999999999999987
No 238
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.03 E-value=0.028 Score=68.93 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=51.2
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccccccccc---cccch----------hhHHHHHHHhhchhH
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATALTQAGY---VGEDA----------ESVLYKLLAAADFDV 224 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l~~~gy---~G~~~----------~~~l~~l~~~~~~~~ 224 (510)
..+.+++++||||||||++|.+++... |.+.+.++..+..+.-+ .|.+. ......+.. ...
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~---~l~ 1155 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD---ALA 1155 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH---HHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHH---HHH
Confidence 367899999999999999999987655 77888888887543211 11111 001111111 112
Q ss_pred HHhcCcEEEEcchhhhhh
Q 038067 225 EAAQRGIVYIDEVDKIVK 242 (510)
Q Consensus 225 ~~~~~~Vl~iDEidkl~~ 242 (510)
+...+.+|+||++..+.+
T Consensus 1156 ~~~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1156 RSGAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHTCCSEEEESCGGGCCC
T ss_pred HhCCCCEEEECCcccccc
Confidence 345678999999999853
No 239
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.98 E-value=0.026 Score=59.26 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=31.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..++++|++|+|||+++..||..+ |..+..+++...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 34689999999999999999999877 567777776543
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.94 E-value=0.0077 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=22.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHhC
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
-+.|.|++|+||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999984
No 241
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.85 E-value=0.055 Score=57.63 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..++|+||+|+||||+++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45679999999999999999999887
No 242
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.82 E-value=0.017 Score=51.94 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||.|+|||++++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999999988
No 243
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.81 E-value=0.022 Score=60.27 Aligned_cols=26 Identities=31% Similarity=0.509 Sum_probs=22.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++|+||+|+|||+|+..++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34569999999999999999887655
No 244
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.80 E-value=0.019 Score=54.79 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=27.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCCeEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVPFTI 193 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~ 193 (510)
...|.+.|++|||||++|+.||+.++.+++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3479999999999999999999999988754
No 245
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.79 E-value=0.022 Score=54.70 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEE
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTIT 194 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~ 194 (510)
..+-|.||||+|||++|+.|++.++.+++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4588999999999999999999998877644
No 246
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.77 E-value=0.017 Score=56.41 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+...++++||+|+||||+.++++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45679999999999999999999877
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.75 E-value=0.018 Score=54.73 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++.-+.|.||+|+|||||.+.|+..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445799999999999999999998874
No 248
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.68 E-value=0.013 Score=58.12 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=26.9
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC---CCeEEEeccccc
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN---VPFTITDATALT 200 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~~s~l~ 200 (510)
.-|.+.||+|+||||+|+.|++.++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4689999999999999999999875 445666766653
No 249
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.59 E-value=0.073 Score=50.45 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=24.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
.-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 456799999999999887777655 66666665
No 250
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.57 E-value=0.021 Score=54.63 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
++..+-|.||+|+||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34568999999999999999999988654
No 251
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.55 E-value=0.022 Score=54.39 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+.-++|.||+|+||||+++.|++.++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999999985
No 252
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.52 E-value=0.038 Score=54.92 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=30.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~ 198 (510)
.+..++|+||+|+||||++..||..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45789999999999999999999776 45666666654
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.49 E-value=0.014 Score=55.25 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=16.8
Q ss_pred cCceEEEEccCCChHHHHHHHHH-HHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLA-RIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA-~~l 187 (510)
++..+.|+||+|+||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34568999999999999999999 876
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.44 E-value=0.024 Score=51.20 Aligned_cols=22 Identities=50% Similarity=0.690 Sum_probs=19.0
Q ss_pred cCceEEEEccCCChHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTL 183 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~l 183 (510)
++.-+.|+||+|+||||+++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3456999999999999999963
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.43 E-value=0.079 Score=55.50 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s 197 (510)
++.-+++.|+||+|||++|..+|... +.|++.++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 45678999999999999999988654 5678777654
No 256
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.39 E-value=0.071 Score=57.10 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=28.2
Q ss_pred cCceEEEEccCCChHHHHHHH--HHHHh--CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKT--LARIV--NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~--lA~~l--~~p~~~~~~s~ 198 (510)
++..++|.||+|+|||+|++. ++... +..-+.++..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 557899999999999999999 45544 45566666544
No 257
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.36 E-value=0.025 Score=56.63 Aligned_cols=26 Identities=27% Similarity=0.671 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+|||+|++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45678899999999999999999998
No 258
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.34 E-value=0.027 Score=61.27 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=31.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC----CCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN----VPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~----~p~~~~~~s~l 199 (510)
+..++|+|+||+|||++|++|++.++ .+++.+|...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 36799999999999999999999985 78888886554
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.32 E-value=0.025 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.725 Sum_probs=21.5
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999887
No 260
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.30 E-value=0.028 Score=60.40 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=29.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
.+..++|+|.||+|||++|+.|++.+ +.+...++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 45679999999999999999999988 445555555443
No 261
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.23 E-value=0.028 Score=56.19 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..+.|+||+|+||||+++.||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999999888
No 262
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.16 E-value=0.13 Score=53.95 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=32.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s~l 199 (510)
++..++++|++|+||||++-.||..+ |..+..+|+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 46789999999999999999999776 677888887754
No 263
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.14 E-value=0.05 Score=53.38 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=27.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~ 196 (510)
++.-++|.||||+|||++++.++..+ |.+++.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 44579999999999999999999876 335555543
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.06 E-value=0.033 Score=50.28 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+.-.+|+||+|+|||+++++|+-.++
T Consensus 25 ~~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 25 SKGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 455789999999999999999998884
No 265
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.06 E-value=0.03 Score=55.56 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=24.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..+.+.||+|+||||+++.|++.++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445799999999999999999999884
No 266
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.01 E-value=0.12 Score=51.37 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=29.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
+..+++.|++|+|||+++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5678999999999999999999877 6677777665
No 267
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.00 E-value=0.03 Score=56.10 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..+.|.||+|+||||+++.|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45679999999999999999999988
No 268
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.99 E-value=0.03 Score=51.72 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=27.6
Q ss_pred EEEEccCCChHHHHHHHHHHHhCCCeEEEeccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIVNVPFTITDATA 198 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~ 198 (510)
+|++|++|+|||++|+.++.. +.|.+++.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999977 87877776544
No 269
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.89 E-value=0.032 Score=57.30 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..++++||+|+||||++++++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55679999999999999999999877
No 270
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.88 E-value=0.039 Score=59.12 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=25.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
.+.+++|.|.+||||||+|++||+.++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4468999999999999999999999974
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.87 E-value=0.031 Score=55.68 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..+.|.||+|+||||+++.|+..+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999999875
No 272
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.85 E-value=0.034 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999887
No 273
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.84 E-value=0.069 Score=48.71 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
..+.+.|++|+|||+++..|+..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999999887 44444333
No 274
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.83 E-value=0.059 Score=54.25 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=24.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+..+.|.||+|+||||+++.|+..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345799999999999999999999985
No 275
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.77 E-value=0.021 Score=60.39 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=27.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC---CCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN---VPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~---~p~~~~~ 195 (510)
.+..++|+|.||+|||++++.|++.++ .+...++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 456899999999999999999999874 3444444
No 276
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.76 E-value=0.028 Score=60.80 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=30.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC----CCeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN----VPFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~----~p~~~~~~s~l 199 (510)
.+..+.|+|++|+||||++++|+..++ ..+..+|...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 456799999999999999999999984 34545666554
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.69 E-value=0.063 Score=53.98 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=30.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
++..++++||+|+||||++..||..+ +..+..+++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45689999999999999999999877 56666666643
No 278
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.66 E-value=0.04 Score=53.70 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++|+||+|+|||++++.++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999755
No 279
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.028 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.++||+|+|||||++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999988
No 280
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.55 E-value=0.071 Score=50.30 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=25.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEE
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTI 193 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~ 193 (510)
+.-+.|.|++|+||||+++.|++.+ +.+++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 4568999999999999999999988 345543
No 281
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.44 E-value=0.66 Score=50.19 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh-------CCCeEEEeccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV-------NVPFTITDATA 198 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l-------~~p~~~~~~s~ 198 (510)
..|+|+.|.||+|||++++.+...+ ...++.+|...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4799999999999999999876544 23588888764
No 282
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.41 E-value=0.036 Score=53.05 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+|||||.+.|+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44578999999999999999999776
No 283
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.38 E-value=0.15 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=23.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..++++||+|+|||+|++.|++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45789999999999999999999876
No 284
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.36 E-value=0.042 Score=50.49 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=24.7
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
.....+||.|+||+|||++|..+.+. |..++
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 35578999999999999999998873 44333
No 285
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.34 E-value=0.037 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999999766
No 286
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.32 E-value=0.042 Score=51.96 Aligned_cols=32 Identities=34% Similarity=0.360 Sum_probs=28.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhCCCeEEEec
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVNVPFTITDA 196 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~ 196 (510)
..+-|+|..|||||++++.+++ +|.|++..|.
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 4689999999999999999998 8988876664
No 287
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.28 E-value=0.047 Score=55.83 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..++|+||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45689999999999999999999887
No 288
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.24 E-value=0.048 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=23.1
Q ss_pred ceEEEEccCCChHHHHHHHHHHHhC
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999999993
No 289
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.24 E-value=0.084 Score=54.12 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=29.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
...|++++||+|+|||++++.++..+ +..++.+|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56799999999999999999998665 6677777753
No 290
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.23 E-value=0.033 Score=56.91 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=24.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++..+++.||+|+||||++++|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 556899999999999999999998873
No 291
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.13 E-value=0.057 Score=56.35 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=24.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
+...++++||+|+||||+.++++..+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999999884
No 292
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.09 E-value=0.044 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+|||||.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44678999999999999999999776
No 293
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.06 E-value=0.021 Score=55.21 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..|+|.|++|+||||+++.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34579999999999999999999998
No 294
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.04 E-value=0.055 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.|.||+|+|||++++.|...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998876
No 295
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.00 E-value=0.053 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=21.7
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++.|+||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999877
No 296
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.96 E-value=0.055 Score=55.05 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=24.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
...+.|+||+|+|||||++.|+..+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999999853
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.94 E-value=0.04 Score=51.81 Aligned_cols=25 Identities=44% Similarity=0.549 Sum_probs=22.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
++..+.|.||+|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999976
No 298
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.90 E-value=0.078 Score=53.75 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
+..-+++.|+||+|||++|..+|... +.++..++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 44569999999999999999998765 6677776654
No 299
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.90 E-value=0.093 Score=52.81 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=28.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh-----CCCeEEEeccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV-----NVPFTITDATA 198 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l-----~~p~~~~~~s~ 198 (510)
++..++++||||+|||+||-.++... +...+++|...
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 34468999999999999987766443 56778888764
No 300
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.89 E-value=0.057 Score=57.85 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=27.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC--CCeEEEec
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN--VPFTITDA 196 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~--~p~~~~~~ 196 (510)
.+.++++.||+|+||||++++++..+. ...+.++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 566899999999999999999998883 34455543
No 301
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.80 E-value=0.05 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999999876
No 302
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.78 E-value=0.06 Score=51.97 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=22.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
++..+.|.||+|+|||||.+.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457889999999999999999975
No 303
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.76 E-value=0.098 Score=57.50 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=23.7
Q ss_pred CceEEEEccCCChHHHHH-HHHHHHh--CCCeEEEecc
Q 038067 163 KSNVLLMGPTGSGKTLLA-KTLARIV--NVPFTITDAT 197 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lA-r~lA~~l--~~p~~~~~~s 197 (510)
+.-.|+.||||||||+++ ..++..+ +.+++.+..+
T Consensus 205 ~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 205 KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 456899999999999854 4444444 5555555544
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.74 E-value=0.06 Score=51.77 Aligned_cols=24 Identities=42% Similarity=0.798 Sum_probs=22.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.|.||+|+|||||.+.++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678999999999999999999876
No 305
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.67 E-value=0.054 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.646 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999776
No 306
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.66 E-value=0.11 Score=49.16 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=25.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhCCC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVNVP 190 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~~p 190 (510)
+.-+.|.|++|+|||++++.|++.++.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3569999999999999999999999764
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.65 E-value=0.061 Score=55.03 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++.-+.|.||+|||||||.+.|+...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34568899999999999999999876
No 308
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.64 E-value=0.053 Score=51.25 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.++..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999999776
No 309
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.64 E-value=0.052 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999765
No 310
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.63 E-value=0.066 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++.|++|+|||++.+.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999754
No 311
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.62 E-value=0.055 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998776
No 312
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.60 E-value=0.11 Score=51.76 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=28.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
+..-+++.|+||+|||++|..+|... +.+.+.++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44579999999999999999998655 4566666654
No 313
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.60 E-value=0.056 Score=51.86 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999776
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.59 E-value=0.057 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999999876
No 315
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.58 E-value=0.073 Score=47.67 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++|.|++|+|||+|.+.+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999985
No 316
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.56 E-value=0.067 Score=52.26 Aligned_cols=26 Identities=42% Similarity=0.540 Sum_probs=22.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+...
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999763
No 317
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.49 E-value=0.058 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||++.|+..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44578999999999999999999876
No 318
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.49 E-value=0.07 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..++|.||+|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 319
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.47 E-value=0.077 Score=48.99 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...+++++|++|+|||+|..++....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998754
No 320
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.46 E-value=0.058 Score=52.69 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||++.++..+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44678999999999999999999876
No 321
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.45 E-value=0.06 Score=52.39 Aligned_cols=26 Identities=42% Similarity=0.588 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45678999999999999999999765
No 322
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.43 E-value=0.06 Score=52.56 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44578899999999999999999776
No 323
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.43 E-value=0.071 Score=48.58 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.|.||+|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999998754
No 324
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.40 E-value=0.061 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999999776
No 325
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.39 E-value=0.13 Score=50.86 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++..+.++|++|+|||+++..+|..+ +..+..+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45678899999999999999999877 5566666653
No 326
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.37 E-value=0.062 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.++..+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578999999999999999999776
No 327
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.36 E-value=0.091 Score=55.22 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=29.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++.-+++.|+||+|||++|..+|... +.+++.++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 45679999999999999999988765 5677777654
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.35 E-value=0.071 Score=54.44 Aligned_cols=26 Identities=42% Similarity=0.640 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+...+.|.||+|+|||||.+.|+...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578899999999999999999876
No 329
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.24 E-value=0.48 Score=56.46 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
++..+.++||+|+|||++++.|.+.+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 667899999999999999999998884
No 330
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.24 E-value=0.11 Score=56.08 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=30.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecccc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDATAL 199 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~l 199 (510)
+..++|+|++|+|||++|+.|++.+ |.++..+|...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 4679999999999999999999987 456777775544
No 331
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.24 E-value=0.066 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999776
No 332
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.24 E-value=0.082 Score=46.07 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
.++++.|++|+|||++.+.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 333
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.23 E-value=0.075 Score=54.34 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34568899999999999999999876
No 334
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.22 E-value=0.075 Score=54.40 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34568899999999999999999876
No 335
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.21 E-value=0.066 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578899999999999999999876
No 336
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.19 E-value=0.065 Score=54.54 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.||...
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 34578999999999999999999876
No 337
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.17 E-value=0.083 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
.++++.|++|+|||++...+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999754
No 338
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.17 E-value=0.076 Score=54.71 Aligned_cols=26 Identities=35% Similarity=0.652 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34568999999999999999999877
No 339
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.14 E-value=0.069 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=19.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+.-|.|.||+|+||||+++.|++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999988
No 340
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.14 E-value=0.069 Score=52.11 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44578899999999999999999776
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.12 E-value=0.078 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..+.|.||+|+|||||.+.||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34568899999999999999999876
No 342
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.11 E-value=0.093 Score=50.39 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=23.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+.-+.|.|++|+|||++++.|++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999988
No 343
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.09 E-value=0.082 Score=45.87 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++.|++|+|||+|.+++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998754
No 344
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.08 E-value=0.079 Score=54.41 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 44578999999999999999999876
No 345
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.04 E-value=0.077 Score=46.24 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
-++++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 346
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.01 E-value=0.071 Score=51.63 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44578899999999999999999876
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.099 Score=47.10 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++++|++|+|||++...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998643
No 348
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.97 E-value=0.092 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
.++++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999988753
No 349
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.77 E-value=0.17 Score=53.19 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=28.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s 197 (510)
++.-+++.|+||+|||+++..++..+ +.+++.++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 45679999999999999999998755 4577777654
No 350
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.72 E-value=0.11 Score=49.54 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
.+.-+.|.|++|+|||++++.|++.++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345699999999999999999999874
No 351
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.70 E-value=0.096 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..+++.|++|+|||+|.+++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999975
No 352
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.68 E-value=0.1 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.2
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
-++++.|++|+|||++.+++...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999987643
No 353
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.68 E-value=0.12 Score=54.84 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=28.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh----CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV----NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l----~~p~~~~~~s 197 (510)
+..-+++.|+||+|||++|..+|... +.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 55679999999999999999998765 4567776654
No 354
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.67 E-value=0.16 Score=51.49 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=28.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
...+.|+|+||+|||+++..|+..+ +..+..+++.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4579999999999999999999887 5666555544
No 355
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.64 E-value=0.16 Score=53.01 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=29.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
++..++++||+|+||||++..||..+ +..+..+++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence 45679999999999999999999888 5566666664
No 356
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.61 E-value=0.081 Score=47.64 Aligned_cols=21 Identities=43% Similarity=0.763 Sum_probs=19.6
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 038067 165 NVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~ 185 (510)
.+++.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999875
No 357
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.58 E-value=0.1 Score=45.91 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.9
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..+++.|++|+|||+|.+++..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5799999999999999998864
No 358
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.56 E-value=0.11 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..+++.|++|+|||++..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999874
No 359
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.50 E-value=0.098 Score=54.07 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=23.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++.-+.|.||+|||||||.+.|+..+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45679999999999999999999765
No 360
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.48 E-value=0.11 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++++|++|+|||+|...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 361
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.48 E-value=0.07 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..+.|.||+|+|||||.+.||...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999876
No 362
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.44 E-value=0.11 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...+++++|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3458999999999999999998754
No 363
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.41 E-value=0.11 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++|++|+|||++.+++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.34 E-value=0.13 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+++.|++|+|||+|..++..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999874
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.33 E-value=0.093 Score=51.19 Aligned_cols=25 Identities=36% Similarity=0.797 Sum_probs=22.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+..+.|.||+|+|||||.+.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999876
No 366
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.095 Score=55.35 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..+.|.||+|+|||||+|.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34569999999999999999999876
No 367
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.32 E-value=0.12 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEccCCChHHHHHHHHHHHh
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++++.|++|+|||+|...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999997543
No 368
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.31 E-value=0.06 Score=53.84 Aligned_cols=26 Identities=31% Similarity=0.616 Sum_probs=23.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+|||||++.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 55679999999999999999999876
No 369
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.30 E-value=0.11 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999763
No 370
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.25 E-value=0.13 Score=48.44 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=22.3
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.-|.|.|++|+||||+++.|++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999988
No 371
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.23 E-value=0.12 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.7
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...+++.|++|+|||++..++..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999875
No 372
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.23 E-value=0.12 Score=45.31 Aligned_cols=20 Identities=45% Similarity=0.768 Sum_probs=18.8
Q ss_pred eEEEEccCCChHHHHHHHHH
Q 038067 165 NVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA 184 (510)
.+++.|++|+|||+|...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999986
No 373
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=91.17 E-value=0.17 Score=52.59 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=28.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s 197 (510)
...|++++|+||+|||++++.+...+ +.+++.+|..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45799999999999999987776544 6677777754
No 374
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.16 E-value=0.12 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++++|++|+|||+|..++...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999863
No 375
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.16 E-value=0.12 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..+++.|++|+|||++..++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999875
No 376
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.15 E-value=0.12 Score=44.98 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.1
Q ss_pred ceEEEEccCCChHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA 184 (510)
-.+++.|++|+|||+|.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 369999999999999999885
No 377
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.10 E-value=0.13 Score=44.87 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+++.|++|+|||+|..++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999965
No 378
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.08 E-value=0.12 Score=56.36 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=22.7
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.....+++.||||||||+++..+...+
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 356789999999999999988776655
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.06 E-value=0.13 Score=47.51 Aligned_cols=26 Identities=38% Similarity=0.530 Sum_probs=23.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHHhC
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
...++++|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998763
No 380
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.05 E-value=0.27 Score=46.42 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=18.0
Q ss_pred cCceEEEEccCCChHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTL 183 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~l 183 (510)
.+..+++.||+|||||++...+
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHH
Confidence 3468999999999999866554
No 381
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.05 E-value=0.14 Score=45.23 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.4
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHh
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.-.+++||.|+|||++..+|.-.+
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998776
No 382
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.00 E-value=0.1 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44578899999999999999999876
No 383
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.94 E-value=0.23 Score=47.19 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh--CCCeEEEecc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV--NVPFTITDAT 197 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l--~~p~~~~~~s 197 (510)
....+++.|.+|+|||+++..+|..+ +.....+|+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34579999999999999999999877 6666666644
No 384
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.94 E-value=0.12 Score=46.04 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++|.|++|+|||+|.+++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999864
No 385
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.93 E-value=0.13 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...+++.|++|+|||+|.+++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999865
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.92 E-value=0.13 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|..++...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 387
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.87 E-value=0.13 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+...++++|++|+|||+|.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 4568999999999999999998853
No 388
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.83 E-value=0.14 Score=45.05 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...++++|++|+|||++.+++...-
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999997543
No 389
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.81 E-value=0.23 Score=53.13 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=26.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
+...+++.||+|+|||+|++.++... |.+.+.+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 55678999999999999999999766 34444444
No 390
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.78 E-value=0.14 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|+..+...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 4468999999999999999999854
No 391
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.77 E-value=0.14 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
-.+++.|++|+|||+|..++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999854
No 392
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.75 E-value=0.14 Score=45.93 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|.+.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 393
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.68 E-value=0.24 Score=45.94 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=25.3
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
|.|.|+-|+||||.++.|++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999988 56665543
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.65 E-value=0.15 Score=45.87 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||++..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999864
No 395
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.64 E-value=0.14 Score=45.17 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...+++.|++|+|||+|...+..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHG
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999874
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.63 E-value=0.14 Score=45.50 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...+++.|++|+|||+|.+.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999998754
No 397
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.62 E-value=0.13 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...+++.|++|+|||+|..++..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998863
No 398
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.62 E-value=0.29 Score=49.54 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=22.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...+.|+|+||+|||||..++...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999865
No 399
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.59 E-value=0.15 Score=46.25 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+++.|++|+|||++.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999986
No 400
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.58 E-value=0.15 Score=45.97 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|..++...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999998863
No 401
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.51 E-value=0.14 Score=55.96 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=20.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.....++.||||||||+++..+...+
T Consensus 194 ~~~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 194 QRPLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999877666544
No 402
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.49 E-value=0.23 Score=46.42 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.8
Q ss_pred EEEEccCCChHHHHHHHHHHHh--CCCeEE
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV--NVPFTI 193 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l--~~p~~~ 193 (510)
|.|.|+.|+||||+++.|++.+ +.+++.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~ 34 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM 34 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 7899999999999999999998 444443
No 403
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.49 E-value=0.16 Score=47.07 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...++++|++|+|||+++..++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.48 E-value=0.083 Score=49.98 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
++.-+.|.||.|+||||+++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4457999999999999999999987
No 405
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.46 E-value=0.16 Score=45.23 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=21.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+..+++++|++|+|||+|..++...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999998854
No 406
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.44 E-value=0.16 Score=44.99 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|.+++...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999998753
No 407
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.16 Score=44.90 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++.|++|+|||+|...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3458999999999999999998753
No 408
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=90.41 E-value=0.33 Score=46.02 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=22.7
Q ss_pred CceEEEEccCCChHHH-HHHHHHHHh--CCCeEEEe
Q 038067 163 KSNVLLMGPTGSGKTL-LAKTLARIV--NVPFTITD 195 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~-lAr~lA~~l--~~p~~~~~ 195 (510)
+.-.+++||.|+|||+ |.+.+.+.. +...+.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 3457899999999999 556654444 55555443
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.39 E-value=0.15 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.4
Q ss_pred eEEEEccCCChHHHHHHHHHH
Q 038067 165 NVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~ 185 (510)
.+++.|++|+|||+|...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999999875
No 410
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.38 E-value=0.17 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.4
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|..++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998864
No 411
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.38 E-value=0.16 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....+++.|++|+|||+|..++...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999998654
No 412
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.33 E-value=0.16 Score=45.44 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=21.7
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
...+++.|++|+|||+|.+.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999998887655
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.30 E-value=0.16 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998753
No 414
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.29 E-value=0.088 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+.|+|++|+|||+|.++++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999998864
No 415
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.17 E-value=0.14 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+...++++|++|+|||+|..++...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999999764
No 416
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.13 E-value=0.16 Score=51.99 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|.||+|+|||||.+.|+...
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 44578999999999999999999876
No 417
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.11 E-value=0.25 Score=51.75 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
.+..+.|.||+|+|||+|++.|+.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3457899999999999999999999854
No 418
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.02 E-value=0.18 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+.|.||||+||||+.+.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999999876
No 419
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.00 E-value=0.2 Score=44.29 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||++.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988753
No 420
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.99 E-value=0.18 Score=45.89 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|..++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999998753
No 421
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.97 E-value=0.18 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++|++|+|||+|..++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999998754
No 422
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.94 E-value=0.18 Score=45.27 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|..++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998864
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.93 E-value=0.19 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|.+.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998764
No 424
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.93 E-value=0.18 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4468999999999999999998753
No 425
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=89.88 E-value=0.19 Score=57.59 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
.+..++|+||.|+||||+.|.++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 3567999999999999999998854
No 426
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.88 E-value=0.13 Score=45.59 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.3
Q ss_pred cCceEEEEccCCChHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA 184 (510)
....+++.|++|+|||+|...+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 44689999999999999998875
No 427
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.83 E-value=0.18 Score=45.53 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.1
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++++|++|+|||+|.+.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.82 E-value=0.19 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...++++|++|+|||+|...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 429
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.79 E-value=0.19 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=21.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3457999999999999999988753
No 430
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.79 E-value=0.19 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..-.++|.|++|+|||+|...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999887654
No 431
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.74 E-value=0.19 Score=45.12 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...+++++|++|+|||+|..++...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999998753
No 432
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.73 E-value=0.19 Score=45.32 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=22.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..-.++++|++|+|||+|.+.+...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34579999999999999999988654
No 433
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.73 E-value=0.29 Score=49.60 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=24.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV 189 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~ 189 (510)
.+..+.|.||+|+|||+|.+.|+.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3457999999999999999999999854
No 434
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.68 E-value=0.19 Score=45.23 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|...+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999998753
No 435
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.67 E-value=0.18 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.0
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++.|.|+||+|||+|..++...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 436
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.61 E-value=0.15 Score=45.12 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+...+++.|++|+|||+|...+...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998864
No 437
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.60 E-value=0.2 Score=45.53 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++++|++|+|||+|..++...-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34579999999999999999987643
No 438
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.60 E-value=0.2 Score=45.10 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.6
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|...+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999753
No 439
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.57 E-value=0.18 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+++.|++|+|||+|.+++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 445799999999999999998863
No 440
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.57 E-value=0.19 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+++.|++|+|||++..++..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999874
No 441
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.49 E-value=0.28 Score=55.03 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.6
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+..++|+||.|+|||++.|.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 6789999999999999999998754
No 442
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.48 E-value=0.2 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 443
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.46 E-value=0.21 Score=45.10 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++++|++|+|||+|.+.+...-
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988643
No 444
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.42 E-value=0.19 Score=45.04 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....+++.|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999988643
No 445
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.42 E-value=0.21 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|..++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346899999999999999999976
No 446
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.38 E-value=0.2 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++|++|+|||+|...+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 447
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.36 E-value=0.21 Score=45.52 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....++++|++|+|||+|.+++...-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 44689999999999999999988643
No 448
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.29 E-value=0.26 Score=55.55 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
.+..++|+||.|+|||++.|.++...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 45679999999999999999998754
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.22 E-value=0.21 Score=46.02 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.5
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|.+.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999864
No 450
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.19 E-value=0.18 Score=45.40 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....|+++|++|+|||+|...+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 567899999999999999998863
No 451
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.17 E-value=0.22 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++|++|+|||+|.+.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999998754
No 452
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.15 E-value=0.19 Score=47.48 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++|+|++|+|||+|..+|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4468999999999999999998753
No 453
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.14 E-value=0.23 Score=45.57 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=21.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+++.|++|+|||+|..++....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 454
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.07 E-value=0.37 Score=45.17 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCC-CeEEEecccc
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNV-PFTITDATAL 199 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~-p~~~~~~s~l 199 (510)
|+.-++++|.||+||+++|+.+.+.++. .+..+.+++.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 6678999999999999999999987753 2444555543
No 455
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.03 E-value=0.24 Score=45.97 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.4
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhC
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVN 188 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~ 188 (510)
..+.-.+|+||.|+|||++..+|.-.++
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3556789999999999999999998774
No 456
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.99 E-value=0.19 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
-.++++||+|+|||+|.+.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998743
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.93 E-value=0.23 Score=44.46 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|.+++..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999874
No 458
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.91 E-value=0.23 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+.|.||+|+|||||.++|+ ..
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 55679999999999999999999 54
No 459
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.88 E-value=0.24 Score=45.19 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|..++..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999874
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.82 E-value=0.24 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.3
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|.+.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 461
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.79 E-value=0.23 Score=50.63 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+.|+||+|+|||||.++|+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 55689999999999999999998654
No 462
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.74 E-value=0.46 Score=49.80 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=20.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...-.++.|+||||||++...+++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 445689999999999999987764
No 463
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.67 E-value=0.17 Score=46.12 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.9
Q ss_pred CceEEEEccCCChHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA 184 (510)
...++++|++|+|||+|.+.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999985
No 464
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.66 E-value=0.24 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.5
Q ss_pred cCceEEEEccCCChHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA 184 (510)
....++++|++|+|||+|...+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999885
No 465
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=88.60 E-value=0.23 Score=49.81 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=24.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHhCCCeE
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIVNVPFT 192 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~ 192 (510)
....++|.|+||+|||++|..+.+. |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4568999999999999999999774 44443
No 466
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=88.59 E-value=0.24 Score=55.85 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=20.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+++.||||||||+++..+...+
T Consensus 370 ~~~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp TSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999877766554
No 467
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.59 E-value=0.23 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|...+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999874
No 468
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.55 E-value=0.25 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=21.1
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|...+..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 345899999999999999999875
No 469
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.54 E-value=0.24 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.4
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...++++|++|+|||+|.+++..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999863
No 470
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.48 E-value=0.24 Score=44.83 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.2
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...++++|++|+|||+|.+++..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999863
No 471
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.46 E-value=0.15 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=10.2
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..++++|++|+|||+|...+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998864
No 472
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=88.41 E-value=0.2 Score=50.18 Aligned_cols=38 Identities=34% Similarity=0.347 Sum_probs=27.4
Q ss_pred ccCceEEEEccCCChHHHHHHHHHHHhCCCeEEEecccc
Q 038067 161 LEKSNVLLMGPTGSGKTLLAKTLARIVNVPFTITDATAL 199 (510)
Q Consensus 161 ~~~~~vLL~GPpGtGKT~lAr~lA~~l~~p~~~~~~s~l 199 (510)
.....+||.|+||+|||++|-.+.+ -|..++.=|...+
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i 182 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEI 182 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEE
Confidence 3567899999999999999988754 3555554444433
No 473
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.41 E-value=0.25 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|.+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998874
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.39 E-value=0.26 Score=50.21 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
+++-.+++||+|+|||++..+|+-.+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 44568899999999999999998665
No 475
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.37 E-value=0.33 Score=55.71 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+.-++|+||.|+|||++.|.++-.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999643
No 476
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.35 E-value=0.27 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.2
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...++++|++|+|||+|...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998863
No 477
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.31 E-value=0.42 Score=48.07 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=26.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
....+.+.|+||+|||+++..|+..+ +..+..++
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34679999999999999999999776 44444333
No 478
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=88.20 E-value=0.24 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..+.++++||+|+|||+||+.+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 356799999999999999999863
No 479
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.18 E-value=0.21 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+.|.||+|+|||+|.++|+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 55678999999999999999998655
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.17 E-value=0.28 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred CceEEEEccCCChHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
...++++|++|+|||+|.+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 35799999999999999999864
No 481
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.13 E-value=0.2 Score=52.37 Aligned_cols=21 Identities=43% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEccCCChHHHHHHHHHHH
Q 038067 166 VLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~ 186 (510)
+.|+||+|+|||||.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999865
No 482
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=88.11 E-value=0.37 Score=43.94 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=20.8
Q ss_pred CceEEEEccCCChHHHHHHHHHHHh
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..++++.+|+|+|||.++-.++...
T Consensus 48 ~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 48 GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999999987776543
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.04 E-value=0.27 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred ceEEEEccCCChHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
..++|+|++|+|||+|..++..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999998874
No 484
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.97 E-value=0.12 Score=49.31 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.7
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.|+||+|+|||++.++|+..+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 346789999999999999999988
No 485
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=87.97 E-value=0.3 Score=44.39 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..+++.|+||+|||+|...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998853
No 486
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.96 E-value=0.29 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=20.9
Q ss_pred CceEEEEccCCChHHHHHHHHHHH
Q 038067 163 KSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 163 ~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
...+++.|++|+|||+|...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998753
No 487
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=87.91 E-value=0.28 Score=45.35 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.0
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|...+..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999874
No 488
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.74 E-value=0.23 Score=44.60 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|.+.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998754
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.71 E-value=0.29 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.5
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
..+.|.||+|+|||||.++|+..+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 678999999999999999999887
No 490
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=87.70 E-value=0.23 Score=44.49 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.2
Q ss_pred cCceEEEEccCCChHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLA 184 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA 184 (510)
...+++++|++|+|||++..++.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999884
No 491
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=87.61 E-value=0.28 Score=47.19 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=23.8
Q ss_pred eEEEEccCCChHHHHHHHHHHHhCCCe
Q 038067 165 NVLLMGPTGSGKTLLAKTLARIVNVPF 191 (510)
Q Consensus 165 ~vLL~GPpGtGKT~lAr~lA~~l~~p~ 191 (510)
-+.|+|++|||||++|+.+++.+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 478999999999999999999887553
No 492
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.53 E-value=0.32 Score=44.50 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=21.3
Q ss_pred cCceEEEEccCCChHHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
....++++|++|+|||+|...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999888753
No 493
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.45 E-value=0.33 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred ceEEEEccCCChHHHHHHHHHHH
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARI 186 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~ 186 (510)
..++++|++|+|||+|...+...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 494
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.40 E-value=0.57 Score=43.29 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=24.8
Q ss_pred ceEEEEccCCChHHHHHHHHHHHh---CCCeEEEe
Q 038067 164 SNVLLMGPTGSGKTLLAKTLARIV---NVPFTITD 195 (510)
Q Consensus 164 ~~vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~ 195 (510)
.-.+++||+|+|||+.+-.++..+ +..++.+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999999999887777665 56665553
No 495
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.36 E-value=0.25 Score=53.57 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=23.4
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.+.||+|+||||+++.++..+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55678999999999999999999876
No 496
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.28 E-value=0.62 Score=48.41 Aligned_cols=26 Identities=42% Similarity=0.486 Sum_probs=22.5
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
....+.|.||+|+|||||.++|+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 44579999999999999999999743
No 497
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.24 E-value=0.31 Score=45.42 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=20.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....++++|++|+|||+|..++..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999998864
No 498
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.18 E-value=0.51 Score=44.16 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=28.4
Q ss_pred EEEEccCCChHHHHHHHHHHHh---CCCeEEEeccc
Q 038067 166 VLLMGPTGSGKTLLAKTLARIV---NVPFTITDATA 198 (510)
Q Consensus 166 vLL~GPpGtGKT~lAr~lA~~l---~~p~~~~~~s~ 198 (510)
+.+.|..|+|||++|-.+|..+ |.+++.+|+.-
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5568999999999999999988 67888888764
No 499
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.16 E-value=0.35 Score=54.57 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=18.9
Q ss_pred cCceEEEEccCCChHHHHHHHHHH
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLAR 185 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~ 185 (510)
....+++.||||||||+++..+..
T Consensus 374 ~~~~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999987665543
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.13 E-value=0.32 Score=52.29 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=23.2
Q ss_pred cCceEEEEccCCChHHHHHHHHHHHh
Q 038067 162 EKSNVLLMGPTGSGKTLLAKTLARIV 187 (510)
Q Consensus 162 ~~~~vLL~GPpGtGKT~lAr~lA~~l 187 (510)
++..+.|+||+|+|||||++.|+..+
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999999765
Done!