Query 038070
Match_columns 143
No_of_seqs 212 out of 1540
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 1.5E-37 3.2E-42 242.7 11.6 135 1-138 362-498 (499)
2 PLN02183 ferulate 5-hydroxylas 100.0 2E-36 4.4E-41 239.9 12.8 142 1-143 372-514 (516)
3 KOG0157 Cytochrome P450 CYP4/C 100.0 3.2E-36 7E-41 237.8 10.7 134 1-138 360-495 (497)
4 PLN03234 cytochrome P450 83B1; 100.0 8E-36 1.7E-40 235.4 12.8 140 1-140 356-498 (499)
5 PLN02966 cytochrome P450 83A1 100.0 1.2E-35 2.6E-40 234.8 12.0 139 1-139 359-498 (502)
6 PLN02169 fatty acid (omega-1)- 100.0 1.6E-35 3.4E-40 234.1 12.1 134 1-138 363-499 (500)
7 PLN02394 trans-cinnamate 4-mon 100.0 2.8E-35 6.1E-40 232.5 12.3 137 1-139 361-502 (503)
8 PLN02687 flavonoid 3'-monooxyg 100.0 3.8E-35 8.2E-40 232.7 12.6 141 1-141 365-509 (517)
9 PLN02971 tryptophan N-hydroxyl 100.0 3.7E-35 8.1E-40 234.0 12.4 136 1-138 395-533 (543)
10 PF00067 p450: Cytochrome P450 100.0 1.5E-35 3.2E-40 227.8 9.5 111 1-111 330-440 (463)
11 KOG0156 Cytochrome P450 CYP2 s 100.0 4E-35 8.7E-40 230.3 11.4 134 1-140 354-487 (489)
12 PTZ00404 cytochrome P450; Prov 100.0 8.2E-35 1.8E-39 228.8 11.7 130 1-138 351-482 (482)
13 PLN00168 Cytochrome P450; Prov 100.0 2E-34 4.3E-39 228.6 12.2 136 1-139 375-517 (519)
14 PLN02500 cytochrome P450 90B1 100.0 1.7E-34 3.6E-39 227.6 11.6 131 1-137 352-488 (490)
15 PLN00110 flavonoid 3',5'-hydro 100.0 2E-34 4.4E-39 228.0 12.1 137 1-140 357-498 (504)
16 PLN03195 fatty acid omega-hydr 100.0 1.4E-34 3E-39 229.3 10.6 134 1-138 380-515 (516)
17 PLN02738 carotene beta-ring hy 100.0 4.8E-34 1E-38 230.7 13.2 137 1-140 458-596 (633)
18 KOG0159 Cytochrome P450 CYP11/ 100.0 2.1E-34 4.5E-39 222.8 9.8 133 1-138 385-517 (519)
19 PLN02655 ent-kaurene oxidase 100.0 7.3E-34 1.6E-38 222.8 12.4 137 1-140 329-465 (466)
20 PLN02426 cytochrome P450, fami 100.0 9.7E-34 2.1E-38 224.1 12.1 138 1-140 362-501 (502)
21 PLN02774 brassinosteroid-6-oxi 100.0 8.9E-34 1.9E-38 222.2 11.6 128 1-137 335-462 (463)
22 PLN03018 homomethionine N-hydr 100.0 1.9E-33 4.2E-38 223.7 13.6 136 1-138 382-523 (534)
23 PLN02290 cytokinin trans-hydro 100.0 9.9E-34 2.1E-38 224.4 11.7 132 1-139 383-515 (516)
24 PLN03112 cytochrome P450 famil 100.0 1.8E-33 4E-38 222.7 12.9 139 1-139 364-508 (514)
25 PLN03141 3-epi-6-deoxocathaste 100.0 9.7E-34 2.1E-38 221.3 11.1 128 1-139 323-450 (452)
26 PLN02936 epsilon-ring hydroxyl 100.0 3E-33 6.5E-38 220.6 13.1 138 1-141 345-484 (489)
27 PLN02302 ent-kaurenoic acid ox 100.0 4.7E-33 1E-37 218.9 11.3 130 1-139 359-488 (490)
28 PLN02196 abscisic acid 8'-hydr 100.0 6.9E-33 1.5E-37 217.2 10.1 128 1-138 335-462 (463)
29 PLN02987 Cytochrome P450, fami 100.0 3.2E-32 6.9E-37 214.1 12.1 131 1-138 338-468 (472)
30 KOG0684 Cytochrome P450 [Secon 100.0 7.1E-31 1.5E-35 199.9 8.4 135 1-140 342-484 (486)
31 COG2124 CypX Cytochrome P450 [ 100.0 1.2E-29 2.6E-34 196.5 9.2 100 1-111 288-387 (411)
32 PLN02648 allene oxide synthase 99.9 6E-28 1.3E-32 190.0 9.7 107 1-111 342-462 (480)
33 PF09201 SRX: SRX; InterPro: 68.6 5 0.00011 26.8 2.3 22 82-103 19-40 (148)
34 PF12508 DUF3714: Protein of u 60.7 10 0.00023 27.0 2.9 21 16-36 74-94 (200)
35 COG2101 SPT15 TATA-box binding 46.5 7.2 0.00016 27.1 0.2 36 52-87 35-70 (185)
36 KOG3506 40S ribosomal protein 43.5 11 0.00024 20.9 0.6 10 75-84 13-22 (56)
37 PRK14759 potassium-transportin 39.9 13 0.00027 17.9 0.4 6 54-59 24-29 (29)
38 PF11227 DUF3025: Protein of u 39.7 19 0.00042 25.9 1.5 26 33-58 185-211 (212)
39 PF09604 Potass_KdpF: F subuni 38.7 13 0.00029 17.1 0.4 6 54-59 20-25 (25)
40 PF14550 Peptidase_U35_2: Puta 38.5 24 0.00052 23.1 1.7 20 17-36 73-92 (122)
41 cd00652 TBP_TLF TATA box bindi 37.7 33 0.00071 23.8 2.4 56 52-108 29-87 (174)
42 KOG3302 TATA-box binding prote 36.2 15 0.00032 26.0 0.5 36 51-86 49-84 (200)
43 cd04518 TBP_archaea archaeal T 36.0 11 0.00024 26.2 -0.2 55 52-107 29-86 (174)
44 PF11138 DUF2911: Protein of u 35.5 46 0.00099 22.5 2.7 22 17-38 52-73 (145)
45 cd04516 TBP_eukaryotes eukaryo 33.5 26 0.00057 24.3 1.3 55 52-107 29-86 (174)
46 PF12444 Sox_N: Sox developmen 33.0 30 0.00065 21.1 1.4 21 91-111 60-80 (84)
47 PRK00394 transcription factor; 32.0 49 0.0011 23.1 2.5 35 52-86 28-62 (179)
48 TIGR03779 Bac_Flav_CT_M Bacter 31.9 48 0.001 26.4 2.7 20 17-36 278-297 (410)
49 PF08492 SRP72: SRP72 RNA-bind 28.0 42 0.00091 19.0 1.3 7 55-61 44-50 (59)
50 TIGR02115 potass_kdpF K+-trans 26.1 16 0.00034 17.1 -0.5 7 54-60 19-25 (26)
51 PLN00062 TATA-box-binding prot 24.2 22 0.00047 24.9 -0.4 54 52-106 29-85 (179)
52 PF02663 FmdE: FmdE, Molybdenu 22.3 81 0.0018 20.4 2.1 23 80-102 4-26 (131)
53 PHA03162 hypothetical protein; 21.5 62 0.0013 21.5 1.4 24 77-100 2-25 (135)
54 PTZ00218 40S ribosomal protein 20.6 47 0.001 18.4 0.6 13 75-87 11-25 (54)
55 PF15442 DUF4629: Domain of un 20.0 48 0.001 22.5 0.7 10 79-88 127-136 (150)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-37 Score=242.70 Aligned_cols=135 Identities=36% Similarity=0.604 Sum_probs=114.6
Q ss_pred CcccCCCCCCCCCceeecCCeeec-cEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVN-GFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSG 79 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G 79 (143)
||||+||+++.. .|.+.+|++++ ++.|+||+.|+++.+++|+||++|+||++|+||||.+++.+ ..++.+|+|||.|
T Consensus 362 ETLR~yP~~~~~-~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~G 439 (499)
T KOG0158|consen 362 ETLRLYPPAPFL-NRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVG 439 (499)
T ss_pred HHHhhCCCcccc-cceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCC
Confidence 899999999995 59999999999 99999999999999999999999999999999999976644 4567899999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCccc-ccceeccCceeeEEEEe
Q 038070 80 RRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTE-EFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 80 ~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r 138 (143)
||+|+|++||++|+|++|+.||++|+++..+...+. ..... ...+.+..++.+.+++|
T Consensus 440 PR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~-~~~~~~~~~l~pk~gi~Lkl~~r 498 (499)
T KOG0158|consen 440 PRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIP-LEGDPKGFTLSPKGGIWLKLEPR 498 (499)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCc-ccCCccceeeecCCceEEEEEeC
Confidence 999999999999999999999999999999843222 22222 22233445678888776
No 2
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=2e-36 Score=239.88 Aligned_cols=142 Identities=58% Similarity=1.131 Sum_probs=117.0
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC-CCCCcceeeccCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD-VLGHDFQLLPFGSG 79 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~-~~~~~~~~~~Fg~G 79 (143)
|+||++|++++.. |.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||++++.. ...+.+.|+|||.|
T Consensus 372 EtlRl~p~~p~~~-r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G 450 (516)
T PLN02183 372 ETLRLHPPIPLLL-HETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSG 450 (516)
T ss_pred HHhccCCCcccee-eeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCC
Confidence 8999999999875 889999999999999999999999999999999999999999999975432 12345689999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeecCCC
Q 038070 80 RRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYRLST 143 (143)
Q Consensus 80 ~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~ 143 (143)
+|+|+|++||++|+++++|.|+++|++++.++.....++....++...+...++.+..++|.+|
T Consensus 451 ~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 514 (516)
T PLN02183 451 RRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYRLQC 514 (516)
T ss_pred CCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecCCCC
Confidence 9999999999999999999999999999877643223444344444444455677777777553
No 3
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=237.85 Aligned_cols=134 Identities=34% Similarity=0.616 Sum_probs=113.0
Q ss_pred CcccCCCCCCCCCceeecCCeee-ccEEeCCCcEEEecchhhcCCCCCCC-CCCCCCCCCCCCCCCCCCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTV-NGFHIPKKSRVIVNAWAIGRDPEAWT-DPETFFPERFVGSSVDVLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~-~g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~ 78 (143)
|||||||++|+.. |.+.+|+.+ +||.||||+.|.++++++|||+.+|+ ||++||||||+++......++++|+|||+
T Consensus 360 EsLRLyppvp~~~-R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsa 438 (497)
T KOG0157|consen 360 ESLRLYPPVPLVA-RKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSA 438 (497)
T ss_pred HHhccCCCCchhh-cccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCC
Confidence 8999999999986 999999999 58999999999999999999999996 99999999999754443556789999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEe
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 138 (143)
|+|.|+|++||++|||++++.|+++|++++..+.. ........+.+..+.++.+.+|
T Consensus 439 GpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~---~~~~~~~~l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 439 GPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK---PKPVPELTLRPKNGLKVKLRPR 495 (497)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC---ceeeeEEEEEecCCeEEEEEeC
Confidence 99999999999999999999999999999887731 2222333334455666666665
No 4
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=8e-36 Score=235.40 Aligned_cols=140 Identities=42% Similarity=0.872 Sum_probs=119.2
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCC-CCCCCCCCCCCCCCCCC--CCCCcceeeccC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAW-TDPETFFPERFVGSSVD--VLGHDFQLLPFG 77 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg 77 (143)
|+||++|++++..+|.+.+|++++||.|||||.|.++.+++|+|+++| +||++|+||||+++... ....+..++|||
T Consensus 356 E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG 435 (499)
T PLN03234 356 ESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFG 435 (499)
T ss_pred HHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCC
Confidence 899999999987668888999999999999999999999999999999 89999999999975432 123466899999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeec
Q 038070 78 SGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYR 140 (143)
Q Consensus 78 ~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 140 (143)
+|+|.|+|+++|++|+++++|.|+++|++++.++..+..+.....+++...++.++.+.+++|
T Consensus 436 ~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 436 SGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 999999999999999999999999999999987643444555455566655566888888776
No 5
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=1.2e-35 Score=234.76 Aligned_cols=139 Identities=42% Similarity=0.867 Sum_probs=115.5
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCC-CCCCCCCCCCCCCCCCCCCCCcceeeccCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAW-TDPETFFPERFVGSSVDVLGHDFQLLPFGSG 79 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G 79 (143)
|+||++|+++...+|.+.+|++++||.||+||.|.++.+++|+|+++| +||++|+||||++++.+....+..++|||.|
T Consensus 359 E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G 438 (502)
T PLN02966 359 ETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSG 438 (502)
T ss_pred HHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCC
Confidence 899999999986679999999999999999999999999999999999 9999999999997543222345689999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEee
Q 038070 80 RRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSY 139 (143)
Q Consensus 80 ~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 139 (143)
+|.|+|++||.+|+++++|.||++|++++.++.....++.....++....+.++.++.++
T Consensus 439 ~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (502)
T PLN02966 439 RRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK 498 (502)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccCCCeEEEEEe
Confidence 999999999999999999999999999998875444455445445544333366666554
No 6
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=1.6e-35 Score=234.14 Aligned_cols=134 Identities=23% Similarity=0.475 Sum_probs=108.3
Q ss_pred CcccCCCCCCCCCceeecCCee-eccEEeCCCcEEEecchhhcCCCCCC-CCCCCCCCCCCCCCCCCCC-CCcceeeccC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCT-VNGFHIPKKSRVIVNAWAIGRDPEAW-TDPETFFPERFVGSSVDVL-GHDFQLLPFG 77 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~-~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~-~~~~~~~~Fg 77 (143)
|||||||++++.. |.+.+|.+ ++|+.||||+.|.++.+++|+|+++| +||++|+||||++++.+.. ..++.|+|||
T Consensus 363 EtLRl~P~vp~~~-r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG 441 (500)
T PLN02169 363 ESMRLYPPLPFNH-KAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFN 441 (500)
T ss_pred HHHhcCCCCCcCc-eecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCC
Confidence 8999999999986 65555544 59999999999999999999999999 8999999999997543211 2367899999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEe
Q 038070 78 SGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 78 ~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 138 (143)
+|+|+|+|++||++|++++++.||++|++++.++. ++.......+.++.+..+.+++|
T Consensus 442 ~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~---~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 442 SGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH---KIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC---CcccccceEEecCCCEEEEEEeC
Confidence 99999999999999999999999999999987652 22223333334555677777654
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=2.8e-35 Score=232.46 Aligned_cols=137 Identities=42% Similarity=0.829 Sum_probs=113.8
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC--CCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD--VLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~ 78 (143)
|+||++|+++...+|.+.+|++++||.||+||.|.++.+++|+|+++|+||++|+||||++++.+ ....+..++|||.
T Consensus 361 EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~ 440 (503)
T PLN02394 361 ETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGV 440 (503)
T ss_pred HHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCC
Confidence 89999999999877888899999999999999999999999999999999999999999975432 1223568999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccc--ee-ccCceeeEEEEee
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFG--LV-TPRAKHLLAVPSY 139 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~r~ 139 (143)
|+|+|+|++||++|+++++|.|+++|++++.++.. .++....++ .. .+..+.+.+.+|+
T Consensus 441 G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 441 GRRSCPGIILALPILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCC--cCccccccCceeeccCCCceEEeecCC
Confidence 99999999999999999999999999999877631 234333332 33 4566777777664
No 8
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=3.8e-35 Score=232.66 Aligned_cols=141 Identities=51% Similarity=0.986 Sum_probs=116.3
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC----CCCCcceeecc
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD----VLGHDFQLLPF 76 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~----~~~~~~~~~~F 76 (143)
|+||++|+++...+|.+.+|++++|+.||+|+.|.++.+++|+|+++|+||++|+||||++.+.. ....+..++||
T Consensus 365 EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pF 444 (517)
T PLN02687 365 ETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPF 444 (517)
T ss_pred HHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCC
Confidence 89999999998667999999999999999999999999999999999999999999999964321 11235689999
Q ss_pred CCCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeecC
Q 038070 77 GSGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYRL 141 (143)
Q Consensus 77 g~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~ 141 (143)
|.|+|.|+|++||++|+++++|.||++|++++.++..+.+++....+.+.+.++.++.++.|+|.
T Consensus 445 G~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 445 GAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPRL 509 (517)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccCC
Confidence 99999999999999999999999999999999876432234433344555555556666666663
No 9
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=3.7e-35 Score=233.96 Aligned_cols=136 Identities=31% Similarity=0.685 Sum_probs=114.7
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC--CCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD--VLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~ 78 (143)
|+||+||++++..+|.+.+|++++||.||||+.|+++.+++|+|+++|+||++|+||||++++.+ ....++.|+|||.
T Consensus 395 E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~ 474 (543)
T PLN02971 395 EAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFST 474 (543)
T ss_pred HHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCC
Confidence 89999999998778999999999999999999999999999999999999999999999975322 1234568999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCccccccee-ccCceeeEEEEe
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLV-TPRAKHLLAVPS 138 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r 138 (143)
|+|.|+|++||++|+++++|.||++|++++.++. ..+++...++.. .+....+.+++|
T Consensus 475 G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 475 GKRGCAAPALGTAITTMMLARLLQGFKWKLAGSE--TRVELMESSHDMFLSKPLVMVGELR 533 (543)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCC--CCcchhhhcCcccccccceeeeeec
Confidence 9999999999999999999999999999987653 234554444422 455677777776
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=1.5e-35 Score=227.82 Aligned_cols=111 Identities=45% Similarity=0.763 Sum_probs=99.9
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
||||++|+++...+|.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||++.+.........++|||.|+
T Consensus 330 EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~ 409 (463)
T PF00067_consen 330 ETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGP 409 (463)
T ss_dssp HHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999996667999999999999999999999999999999999999999999999987652234577899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCC
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEG 111 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~ 111 (143)
|.|+|++||++|+++++|.||++|++++.++
T Consensus 410 r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~ 440 (463)
T PF00067_consen 410 RMCPGRNLAMMEMKVFLAKLLRRFDFELVPG 440 (463)
T ss_dssp TS-TTHHHHHHHHHHHHHHHHHHEEEEESTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCEEEECCC
Confidence 9999999999999999999999999999775
No 11
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-35 Score=230.25 Aligned_cols=134 Identities=53% Similarity=0.919 Sum_probs=113.3
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|++|+||++|+..+|.+.+|+.++||.|||||.|+++.|++|+||++|+||++|+||||++++ +.+.....++|||.|+
T Consensus 354 E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GR 432 (489)
T KOG0156|consen 354 ETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGR 432 (489)
T ss_pred HHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999875 2223577999999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeec
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYR 140 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 140 (143)
|.|+|..+|.+++.++++.|+++|+++...+ ++++.... +......++...+..|
T Consensus 433 R~CpG~~La~~~l~l~la~llq~F~w~~~~~----~~d~~e~~-~~~~~~~pl~~~~~~r 487 (489)
T KOG0156|consen 433 RICPGEGLARAELFLFLANLLQRFDWKLPGG----KVDMEEAG-LTLKKKKPLKAVPVPR 487 (489)
T ss_pred CCCCcHHHHHHHHHHHHHHHHheeeeecCCC----CCCCcccc-cceecCCcceeeeecC
Confidence 9999999999999999999999999999876 33444342 3333344444444433
No 12
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=8.2e-35 Score=228.81 Aligned_cols=130 Identities=31% Similarity=0.615 Sum_probs=108.8
Q ss_pred CcccCCCCCCCCCceeecCCeee-ccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTV-NGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSG 79 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G 79 (143)
|+||+||+++...+|.+.+|+++ +||.||||+.|+++.+++|+||++|+||++|+||||++.. .+..++|||.|
T Consensus 351 EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G 425 (482)
T PTZ00404 351 ETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIG 425 (482)
T ss_pred HHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCC
Confidence 89999999997667999999999 9999999999999999999999999999999999998642 35689999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCccccccee-ccCceeeEEEEe
Q 038070 80 RRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLV-TPRAKHLLAVPS 138 (143)
Q Consensus 80 ~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r 138 (143)
+|.|+|++||++|++++++.|+++|+++..++. +.......++. .+.+..+.+++|
T Consensus 426 ~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~R 482 (482)
T PTZ00404 426 PRNCVGQQFAQDELYLAFSNIILNFKLKSIDGK---KIDETEEYGLTLKPNKFKVLLEKR 482 (482)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcEEecCCCC---CCCcccccceeecCCCceeeeecC
Confidence 999999999999999999999999999987652 22221122222 355666766654
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=2e-34 Score=228.64 Aligned_cols=136 Identities=35% Similarity=0.651 Sum_probs=111.6
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC-----CCCCcceeec
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD-----VLGHDFQLLP 75 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~-----~~~~~~~~~~ 75 (143)
|+||+||+++...+|.+.+|++++||.||||+.|.++.+++|+||++|+||++|+||||++.+.. ...+++.++|
T Consensus 375 EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~p 454 (519)
T PLN00168 375 EGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMP 454 (519)
T ss_pred HHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeC
Confidence 89999999988777999999999999999999999999999999999999999999999964221 1123468999
Q ss_pred cCCCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCccc--ccceeccCceeeEEEEee
Q 038070 76 FGSGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTE--EFGLVTPRAKHLLAVPSY 139 (143)
Q Consensus 76 Fg~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~ 139 (143)
||.|+|.|+|++||++|++++++.||++|++++.++. +++... ...+..+.++.+.+++|+
T Consensus 455 FG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~R~ 517 (519)
T PLN00168 455 FGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGD---EVDFAEKREFTTVMAKPLRARLVPRR 517 (519)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCC---cCChhhhceeEEeecCCcEEEEEecc
Confidence 9999999999999999999999999999999997652 222221 222334556677776654
No 14
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=1.7e-34 Score=227.58 Aligned_cols=131 Identities=26% Similarity=0.388 Sum_probs=108.3
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCC------CCcceee
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVL------GHDFQLL 74 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~------~~~~~~~ 74 (143)
|+||+||+++.. +|.+.+|++++||.||||+.|.++.+++|+||++|+||++|+||||++++.... ..++.|+
T Consensus 352 EtlRl~P~~~~~-~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~l 430 (490)
T PLN02500 352 ETLRLGNVVRFL-HRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFM 430 (490)
T ss_pred HHHhcCCCccCe-eeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCc
Confidence 899999999986 599999999999999999999999999999999999999999999996432211 2356899
Q ss_pred ccCCCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEE
Q 038070 75 PFGSGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVP 137 (143)
Q Consensus 75 ~Fg~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (143)
|||+|+|.|+|++||++|++++++.|+++|++++.++.. ... ......+.+.++++.+
T Consensus 431 pFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~--~~~---~~~~~~~~~l~~~~~~ 488 (490)
T PLN02500 431 PFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQ--AFA---FPFVDFPKGLPIRVRR 488 (490)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCc--cee---cccccCCCCceEEEEe
Confidence 999999999999999999999999999999999877632 111 1122334566666653
No 15
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=2e-34 Score=228.00 Aligned_cols=137 Identities=47% Similarity=0.971 Sum_probs=112.7
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCC---CCcceeeccC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVL---GHDFQLLPFG 77 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~---~~~~~~~~Fg 77 (143)
||||++|++++..+|.+.+|++++||.||+|+.|.++.+++|+|+++|+||++|+||||++++.... .+.+.++|||
T Consensus 357 EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG 436 (504)
T PLN00110 357 ESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFG 436 (504)
T ss_pred HHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCC
Confidence 8999999999866799999999999999999999999999999999999999999999996432211 1235899999
Q ss_pred CCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCccccccee--ccCceeeEEEEeec
Q 038070 78 SGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLV--TPRAKHLLAVPSYR 140 (143)
Q Consensus 78 ~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~r 140 (143)
.|+|.|+|++||++|+++++|.|+++|++++.++. +.......+++ ++.+..+.+++|..
T Consensus 437 ~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~ 498 (504)
T PLN00110 437 AGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGV---ELNMDEAFGLALQKAVPLSAMVTPRLH 498 (504)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCC---ccCcccccccccccCCCceEeeccCCC
Confidence 99999999999999999999999999999987762 23322223333 44567777777643
No 16
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=1.4e-34 Score=229.30 Aligned_cols=134 Identities=25% Similarity=0.370 Sum_probs=107.2
Q ss_pred CcccCCCCCCCCCceeecCCeee-ccEEeCCCcEEEecchhhcCCCCCC-CCCCCCCCCCCCCCCCCCCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTV-NGFHIPKKSRVIVNAWAIGRDPEAW-TDPETFFPERFVGSSVDVLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~ 78 (143)
||||++|+++... |.+.+|.++ +|+.||||+.|.++.+++|+||++| +||++|+||||++++......++.|+|||+
T Consensus 380 EtLRl~p~~p~~~-r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~ 458 (516)
T PLN03195 380 ETLRLYPAVPQDP-KGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQA 458 (516)
T ss_pred HHhhcCCCCcchh-hhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCC
Confidence 8999999999885 556566555 9999999999999999999999999 999999999999643211234568999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEe
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 138 (143)
|+|.|+|++||++|++++++.|+++|++++.++. +........+.++.+..+.+++|
T Consensus 459 G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 459 GPRICLGKDSAYLQMKMALALLCRFFKFQLVPGH---PVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCC---cceeeeeeEEecCCCEEEEEEeC
Confidence 9999999999999999999999999999987652 22222222233445667777665
No 17
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=4.8e-34 Score=230.68 Aligned_cols=137 Identities=30% Similarity=0.558 Sum_probs=114.1
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCC--CCCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSV--DVLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~--~~~~~~~~~~~Fg~ 78 (143)
|+|||||+++... |.+.+|.+++||.||+||.|.++.+.+|+||++|+||++|+||||+.+.. .....+..++|||.
T Consensus 458 EtLRL~p~~p~~~-R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~ 536 (633)
T PLN02738 458 ESLRLYPQPPVLI-RRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGG 536 (633)
T ss_pred HHHhcCCCccccc-eeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCC
Confidence 8999999999865 88889999999999999999999999999999999999999999985321 11234568999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeec
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYR 140 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 140 (143)
|+|.|+|++||++|+++++|.|+++|++++.++. .++.......+.++.+..+.+++|.+
T Consensus 537 G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~--~~~~~~~~~~~~p~~~l~v~l~~R~~ 596 (633)
T PLN02738 537 GPRKCVGDMFASFENVVATAMLVRRFDFQLAPGA--PPVKMTTGATIHTTEGLKMTVTRRTK 596 (633)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCC--CCcccccceEEeeCCCcEEEEEECCC
Confidence 9999999999999999999999999999998763 22333223334456678888888765
No 18
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-34 Score=222.75 Aligned_cols=133 Identities=33% Similarity=0.548 Sum_probs=116.5
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
||+||||.++... |...+|.+++||.|||||.|.+..+.+.+|+++|++|++|+|||||+++. ...+++.++|||.|+
T Consensus 385 EtlRlyPv~~~~~-R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~ 462 (519)
T KOG0159|consen 385 ETLRLYPVVPGNG-RVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGP 462 (519)
T ss_pred hhhceeccccccc-cccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCc
Confidence 8999999999986 99999999999999999999999999999999999999999999998763 356799999999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEe
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 138 (143)
|+|+|+++|.+|+-+++|.|+++|+++..+. .+++....+.+.+..++.+.+.+|
T Consensus 463 R~C~GRRiAElEl~llLarllr~f~V~~~~~---~pv~~~~~~il~P~~~l~f~f~~r 517 (519)
T KOG0159|consen 463 RMCLGRRIAELELHLLLARLLRNFKVEFLHE---EPVEYVYRFILVPNRPLRFKFRPR 517 (519)
T ss_pred cccchHHHHHHHHHHHHHHHHHhcceeecCC---CCccceeEEEEcCCCCcceeeeeC
Confidence 9999999999999999999999999999875 355555555455555566666654
No 19
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=7.3e-34 Score=222.82 Aligned_cols=137 Identities=31% Similarity=0.557 Sum_probs=112.7
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
||||++|+++...+|.+.+|++++|+.||||+.|.++.+++|+|+++|+||++|+||||++.+.. ....+.++|||.|+
T Consensus 329 EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~ 407 (466)
T PLN02655 329 ETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGK 407 (466)
T ss_pred HHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCC
Confidence 89999999998877999999999999999999999999999999999999999999999975422 12346899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeec
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYR 140 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 140 (143)
|.|+|++||..|++++++.||++|++++.++.. .... .....+.++.++.+.+.+|.+
T Consensus 408 r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 408 RVCAGSLQAMLIACMAIARLVQEFEWRLREGDE-EKED-TVQLTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCc-cccc-hhheeEeecCCcEEEEeecCC
Confidence 999999999999999999999999999976631 1111 112223344567777776654
No 20
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=9.7e-34 Score=224.06 Aligned_cols=138 Identities=26% Similarity=0.375 Sum_probs=111.5
Q ss_pred CcccCCCCCCCCCceeecCCeee-ccEEeCCCcEEEecchhhcCCCCCC-CCCCCCCCCCCCCCCCCCCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTV-NGFHIPKKSRVIVNAWAIGRDPEAW-TDPETFFPERFVGSSVDVLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~ 78 (143)
|+||++|+++... |.+.+|.++ +|+.||+|+.|.++.+++|+|+++| +||++|+||||++++......++.++|||+
T Consensus 362 EtLRl~p~v~~~~-r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~ 440 (502)
T PLN02426 362 ESMRLFPPVQFDS-KFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQA 440 (502)
T ss_pred HHHhCCCCCCCcc-eeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCC
Confidence 8999999999875 888888777 9999999999999999999999999 999999999999743211234568999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeec
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYR 140 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 140 (143)
|+|.|+|++||++|++++++.|+++|++++.++.. ..+.......+.+..+..+.+++|.+
T Consensus 441 G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~gl~v~~~~r~~ 501 (502)
T PLN02426 441 GLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSN-RAPRFAPGLTATVRGGLPVRVRERVR 501 (502)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCC-CCCcccceeEEecCCCEEEEEEEccC
Confidence 99999999999999999999999999999865421 11222233334455677888877643
No 21
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=8.9e-34 Score=222.20 Aligned_cols=128 Identities=30% Similarity=0.485 Sum_probs=107.3
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|+||++|+++.. .|.+.+|++++||.||||+.|+++.+.+|+|+++|+||++|+||||++++.. ....++|||+|+
T Consensus 335 E~lRl~P~v~~~-~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~ 410 (463)
T PLN02774 335 ETSRLATIVNGV-LRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGT 410 (463)
T ss_pred HHHhcCCCCCCc-ccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcCCCC
Confidence 899999999866 5999999999999999999999999999999999999999999999965421 123699999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEE
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVP 137 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (143)
|.|+|++||.+|++++++.|+++|++++.++. +... ...+.++.+.++++++
T Consensus 411 r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~---~~~~--~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 411 RLCPGKELGIVEISTFLHYFVTRYRWEEVGGD---KLMK--FPRVEAPNGLHIRVSP 462 (463)
T ss_pred CcCCcHHHHHHHHHHHHHHHHHhceEEECCCC---cccc--CCCCCCCCCceEEeee
Confidence 99999999999999999999999999997762 1111 1123355667777663
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=1.9e-33 Score=223.73 Aligned_cols=136 Identities=29% Similarity=0.634 Sum_probs=112.8
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCC-----CCCcceeec
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDV-----LGHDFQLLP 75 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~-----~~~~~~~~~ 75 (143)
|+||++|+++...+|.+.+|++++||.||||+.|.++.+++|+||++|+||++|+||||++++... ...+..++|
T Consensus 382 EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lp 461 (534)
T PLN03018 382 ETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVS 461 (534)
T ss_pred HHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccC
Confidence 899999999987678999999999999999999999999999999999999999999999643211 123568999
Q ss_pred cCCCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccc-eeccCceeeEEEEe
Q 038070 76 FGSGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFG-LVTPRAKHLLAVPS 138 (143)
Q Consensus 76 Fg~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r 138 (143)
||.|+|.|+|++||.+|++++++.|+++|++++.++. ..++.....+ +..+.++.+.+++|
T Consensus 462 FG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~--~~~~~~~~~~~~~~p~~~~v~~~~R 523 (534)
T PLN03018 462 FSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDF--GPLSLEEDDASLLMAKPLLLSVEPR 523 (534)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCC--CCCCccccccceecCCCeEEEEEec
Confidence 9999999999999999999999999999999987652 1233322222 33456678888777
No 23
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=9.9e-34 Score=224.36 Aligned_cols=132 Identities=27% Similarity=0.492 Sum_probs=109.1
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCC-CCCCCCCCCCCCCCCCCCCCCcceeeccCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAW-TDPETFFPERFVGSSVDVLGHDFQLLPFGSG 79 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G 79 (143)
||||++|+++.. +|.+.+|++++|+.||+|+.|.++.+++|+||++| +||++|+||||++.+. ..+..++|||.|
T Consensus 383 EtlRl~p~~~~~-~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G 458 (516)
T PLN02290 383 ESLRLYPPATLL-PRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAG 458 (516)
T ss_pred HHHHcCCCcccc-ceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCC
Confidence 899999999864 79999999999999999999999999999999999 8999999999995321 124579999999
Q ss_pred CCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEee
Q 038070 80 RRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSY 139 (143)
Q Consensus 80 ~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 139 (143)
+|.|+|++||++|++++++.|+++|++++.++.. ........+.+..+.++.+++|+
T Consensus 459 ~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 459 PRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR---HAPVVVLTIKPKYGVQVCLKPLN 515 (516)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc---cCccceeeecCCCCCeEEEEeCC
Confidence 9999999999999999999999999999876521 11111222334456777777653
No 24
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=222.74 Aligned_cols=139 Identities=41% Similarity=0.866 Sum_probs=112.8
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC--C--CCCcceeecc
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD--V--LGHDFQLLPF 76 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~--~~~~~~~~~F 76 (143)
|++|++|++++..+|.+.+|+.++|+.||||+.|.++.+++|+|+++|+||++|+||||+.+... . ...++.++||
T Consensus 364 EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pF 443 (514)
T PLN03112 364 ETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPF 443 (514)
T ss_pred HHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCC
Confidence 89999999998667999999999999999999999999999999999999999999998753211 1 1234689999
Q ss_pred CCCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCccccccee--ccCceeeEEEEee
Q 038070 77 GSGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLV--TPRAKHLLAVPSY 139 (143)
Q Consensus 77 g~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~ 139 (143)
|.|+|.|+|++||++|++++++.||++|++++.++.....+.....+++. .+.++.+.+.+|.
T Consensus 444 g~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 508 (514)
T PLN03112 444 SAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPRL 508 (514)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecCC
Confidence 99999999999999999999999999999998765322334443333444 3446677777663
No 25
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=9.7e-34 Score=221.34 Aligned_cols=128 Identities=26% Similarity=0.404 Sum_probs=109.1
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|+||+||+++.+ +|.+.+|++++||.||||+.|+++.+++|+|+++|+||++|+||||++++. .+..|+|||+|+
T Consensus 323 E~lRl~p~~~~~-~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~ 397 (452)
T PLN03141 323 ETLRMGNIINGV-MRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQ 397 (452)
T ss_pred HHHhccCCcCCc-ceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCC
Confidence 899999998765 699999999999999999999999999999999999999999999997532 356899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEee
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSY 139 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 139 (143)
|.|+|++||.+|+++++|.|+++|++++.++. .. ....+.+..+..+.+.+|.
T Consensus 398 R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 398 RLCPGLDLARLEASIFLHHLVTRFRWVAEEDT---IV---NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCeeecCCCC---ee---ecccccCCCCceEEEEeCC
Confidence 99999999999999999999999999987652 11 1123344556777777763
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=3e-33 Score=220.60 Aligned_cols=138 Identities=28% Similarity=0.456 Sum_probs=114.5
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCC--CCCCcceeeccCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVD--VLGHDFQLLPFGS 78 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~--~~~~~~~~~~Fg~ 78 (143)
||||++|+++...+|.+..|+.++|+.||+|+.|.++.+++|+|+++|+||++|+||||+..+.. ....+..++|||.
T Consensus 345 EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~ 424 (489)
T PLN02936 345 ESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSG 424 (489)
T ss_pred HhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCC
Confidence 89999999998887777777888999999999999999999999999999999999999964321 1223458999999
Q ss_pred CCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeecC
Q 038070 79 GRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYRL 141 (143)
Q Consensus 79 G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~ 141 (143)
|+|.|+|++||++|++++++.|+++|+++++++. ++.........++.+..+.+++|.+-
T Consensus 425 G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~R~~~ 484 (489)
T PLN02936 425 GPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQ---DIVMTTGATIHTTNGLYMTVSRRRVP 484 (489)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCC---ccceecceEEeeCCCeEEEEEeeeCC
Confidence 9999999999999999999999999999988762 23332233334556789999988763
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=4.7e-33 Score=218.89 Aligned_cols=130 Identities=25% Similarity=0.311 Sum_probs=109.5
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|+||++|+++.. .|.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||++... .+..++|||.|+
T Consensus 359 E~lRl~p~~~~~-~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~~----~~~~~~pFG~G~ 433 (490)
T PLN02302 359 ETLRLINISLTV-FREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTP----KAGTFLPFGLGS 433 (490)
T ss_pred HHHHhCCCcccc-hhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCCC----CCCCccCCCCCC
Confidence 899999999886 488889999999999999999999999999999999999999999996432 356899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEee
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSY 139 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 139 (143)
|.|+|++||.+|++++++.|+++|++++.++. .++.......+..+.++.+.+|.
T Consensus 434 r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~ 488 (490)
T PLN02302 434 RLCPGNDLAKLEISIFLHHFLLGYRLERLNPG----CKVMYLPHPRPKDNCLARITKVA 488 (490)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCC----CcceeCCCCCCCCCceEEEEecc
Confidence 99999999999999999999999999987652 12222222344556777777654
No 28
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=6.9e-33 Score=217.22 Aligned_cols=128 Identities=23% Similarity=0.414 Sum_probs=108.0
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|+||++|++++.. |.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||++.. .+..++|||.|+
T Consensus 335 EtlRl~p~~~~~~-R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~ 408 (463)
T PLN02196 335 ETLRVASILSFTF-REAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGT 408 (463)
T ss_pred HHHhcCCCccccc-eeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCC
Confidence 8999999999875 8889999999999999999999999999999999999999999999632 246899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEe
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 138 (143)
|.|+|+++|++|++++++.|+++|++++.++. . +........++.+..+++..+
T Consensus 409 r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~--~--~~~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 409 HSCPGNELAKLEISVLIHHLTTKYRWSIVGTS--N--GIQYGPFALPQNGLPIALSRK 462 (463)
T ss_pred CCCchHHHHHHHHHHHHHHHHHhcEEEEcCCC--C--ceEEcccccCCCCceEEEecC
Confidence 99999999999999999999999999987652 1 222222233455667776543
No 29
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.98 E-value=3.2e-32 Score=214.05 Aligned_cols=131 Identities=29% Similarity=0.369 Sum_probs=109.7
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|+||++|+++.. +|.+.+|++++||.||+|+.|.++.+.+|+|+++|+||++|+||||++++.. ......++|||+|+
T Consensus 338 EtLRl~p~~~~~-~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~ 415 (472)
T PLN02987 338 ETLRVANIIGGI-FRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGP 415 (472)
T ss_pred HHHHccCCcCCc-cccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCC
Confidence 899999999865 5889999999999999999999999999999999999999999999975432 12346899999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEe
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPS 138 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 138 (143)
|.|+|++||.+|++++++.|+++|++++.++. ++.. ...+.+..+..+++++|
T Consensus 416 r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~---~~~~--~~~~~p~~~~~~~~~~r 468 (472)
T PLN02987 416 RLCPGYELARVALSVFLHRLVTRFSWVPAEQD---KLVF--FPTTRTQKRYPINVKRR 468 (472)
T ss_pred cCCCcHHHHHHHHHHHHHHHHhceEEEECCCC---ceee--cccccCCCCceEEEEec
Confidence 99999999999999999999999999987652 2222 22333445677777775
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=7.1e-31 Score=199.89 Aligned_cols=135 Identities=37% Similarity=0.619 Sum_probs=110.0
Q ss_pred CcccCCCCCCCCCceeecCCeeecc----EEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCC--CCC--cce
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNG----FHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDV--LGH--DFQ 72 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~--~~~--~~~ 72 (143)
|||||+||.+... |.+.+|.++.+ |.||+|..|.++...+|+||++|+||+.|+|+||++++.+. ... ++.
T Consensus 342 EtLRL~~p~~~~~-R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy 420 (486)
T KOG0684|consen 342 ETLRLHPPAHSLM-RKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYY 420 (486)
T ss_pred HHHhcCCchhhHH-HhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCccccccccccccc
Confidence 8999999888876 99999999866 99999999999999999999999999999999999765543 122 345
Q ss_pred eeccCCCCCcCccHHHHHHHHHHHHHHHHhhceEecCCCCCCCCCCcccccceeccCceeeEEEEeec
Q 038070 73 LLPFGSGRRGCPGIQLALTVVKQVTAQLVHCFDWELPEGMLPTELDMTEEFGLVTPRAKHLLAVPSYR 140 (143)
Q Consensus 73 ~~~Fg~G~r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r 140 (143)
+||||+|.+.|+|+.||.+|+|.++..+|++||+++.++ ..+++++..- +..+..++.++-+.|
T Consensus 421 ~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~-~~P~~d~s~~---v~~P~g~v~irYK~R 484 (486)
T KOG0684|consen 421 YMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG-PFPEVDYSRM---VMQPEGDVRIRYKRR 484 (486)
T ss_pred ccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC-CCCCCCHHHh---hcCCCCCceEEEeec
Confidence 699999999999999999999999999999999999997 2345555432 333444444444433
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=1.2e-29 Score=196.53 Aligned_cols=100 Identities=41% Similarity=0.638 Sum_probs=95.2
Q ss_pred CcccCCCCCCCCCceeecCCeeeccEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeeccCCCC
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVNGFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPFGSGR 80 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~ 80 (143)
|+||+||+++. .+|.+.+|++++|+.||+|+.|.++++++|+||++|++|++|+|+||. ..++|||+|+
T Consensus 288 E~LR~~ppv~~-~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~ 356 (411)
T COG2124 288 ETLRLYPPVPL-ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGP 356 (411)
T ss_pred HHHHhCCchhc-cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCC
Confidence 89999999999 679999999999999999999999999999999999999999999995 4789999999
Q ss_pred CcCccHHHHHHHHHHHHHHHHhhceEecCCC
Q 038070 81 RGCPGIQLALTVVKQVTAQLVHCFDWELPEG 111 (143)
Q Consensus 81 r~C~G~~~a~~e~~~~l~~ll~~~~~~~~~~ 111 (143)
|.|+|..||++|++++++.|+++|++....+
T Consensus 357 H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 357 HRCLGAALARLELKVALAELLRRFPLLLLAE 387 (411)
T ss_pred ccccCHHHHHHHHHHHHHHHHHhCchhhcCC
Confidence 9999999999999999999999999877665
No 32
>PLN02648 allene oxide synthase
Probab=99.95 E-value=6e-28 Score=190.03 Aligned_cols=107 Identities=26% Similarity=0.524 Sum_probs=93.1
Q ss_pred CcccCCCCCCCCCceeecCCeeec----cEEeCCCcEEEecchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCcceeecc
Q 038070 1 ETLRLHPVTPLMAPHESMEDCTVN----GFHIPKKSRVIVNAWAIGRDPEAWTDPETFFPERFVGSSVDVLGHDFQLLPF 76 (143)
Q Consensus 1 E~lRl~p~~~~~~~r~~~~~~~~~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~F 76 (143)
|+||+||+++... |.+.+|++++ ||.||||+.|+++.+.+|+|+++|+||++|+|+||++++.. ....+++|
T Consensus 342 EtLRl~p~v~~~~-r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f 417 (480)
T PLN02648 342 EALRIEPPVPFQY-GRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFW 417 (480)
T ss_pred HHHhhcCCccccc-ceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---cccccccc
Confidence 8999999999876 7788999996 79999999999999999999999999999999999864322 12234444
Q ss_pred ---------CCCCCcCccHHHHHHHHHHHHHHHHhhce-EecCCC
Q 038070 77 ---------GSGRRGCPGIQLALTVVKQVTAQLVHCFD-WELPEG 111 (143)
Q Consensus 77 ---------g~G~r~C~G~~~a~~e~~~~l~~ll~~~~-~~~~~~ 111 (143)
|+|+|.|+|++||++|++++++.|+++|+ +++.++
T Consensus 418 ~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 418 SNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVD 462 (480)
T ss_pred CCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCC
Confidence 67789999999999999999999999998 998776
No 33
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=68.59 E-value=5 Score=26.81 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=16.6
Q ss_pred cCccHHHHHHHHHHHHHHHHhh
Q 038070 82 GCPGIQLALTVVKQVTAQLVHC 103 (143)
Q Consensus 82 ~C~G~~~a~~e~~~~l~~ll~~ 103 (143)
+|.|++||..++-.++..|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999865
No 34
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=60.72 E-value=10 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=16.8
Q ss_pred eecCCeeeccEEeCCCcEEEe
Q 038070 16 ESMEDCTVNGFHIPKKSRVIV 36 (143)
Q Consensus 16 ~~~~~~~~~g~~ip~g~~v~~ 36 (143)
+..+|+.++|..||||+.+.-
T Consensus 74 RLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 74 RLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred EEcCceEECCEEeCCCCEEEE
Confidence 345788899999999997654
No 35
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=46.51 E-value=7.2 Score=27.14 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccHH
Q 038070 52 ETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGIQ 87 (143)
Q Consensus 52 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~ 87 (143)
.+|+|++|=.---.....+.+.+-|..|.-.|-|.+
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 378999984211111223558899999999999976
No 36
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=43.50 E-value=11 Score=20.89 Aligned_cols=10 Identities=50% Similarity=1.175 Sum_probs=8.8
Q ss_pred ccCCCCCcCc
Q 038070 75 PFGSGRRGCP 84 (143)
Q Consensus 75 ~Fg~G~r~C~ 84 (143)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999985
No 37
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=39.87 E-value=13 Score=17.88 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=3.7
Q ss_pred CCCCCC
Q 038070 54 FFPERF 59 (143)
Q Consensus 54 F~P~R~ 59 (143)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456665
No 38
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=39.71 E-value=19 Score=25.86 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEecchhh-cCCCCCCCCCCCCCCCC
Q 038070 33 RVIVNAWAI-GRDPEAWTDPETFFPER 58 (143)
Q Consensus 33 ~v~~~~~~~-~~d~~~~~~p~~F~P~R 58 (143)
...++-|.- +.|+.+|.|...|+|.|
T Consensus 185 lLGiPGW~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 185 LLGIPGWWPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred ccCCCCCCCCCCCcccccCccccCCCC
Confidence 344555554 88999999999999988
No 39
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=38.74 E-value=13 Score=17.13 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=3.4
Q ss_pred CCCCCC
Q 038070 54 FFPERF 59 (143)
Q Consensus 54 F~P~R~ 59 (143)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 40
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=38.49 E-value=24 Score=23.08 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.4
Q ss_pred ecCCeeeccEEeCCCcEEEe
Q 038070 17 SMEDCTVNGFHIPKKSRVIV 36 (143)
Q Consensus 17 ~~~~~~~~g~~ip~g~~v~~ 36 (143)
+..|..++|-.||+|++++.
T Consensus 73 ~~~d~~~~g~~i~~GtWv~~ 92 (122)
T PF14550_consen 73 APEDMEIGGETIPKGTWVVG 92 (122)
T ss_pred cCCCcccCCeeecceEEEEE
Confidence 45588889999999999864
No 41
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=37.69 E-value=33 Score=23.78 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccHH---HHHHHHHHHHHHHHhhceEec
Q 038070 52 ETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGIQ---LALTVVKQVTAQLVHCFDWEL 108 (143)
Q Consensus 52 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~---~a~~e~~~~l~~ll~~~~~~~ 108 (143)
-+|+|+||-.---.........+-|+.|.=.|.|.. -|...++ -++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~-~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAAR-KYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHH-HHHHHHHHcCCCc
Confidence 478999984311111223457888999999999842 3333333 3345566655443
No 42
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=36.17 E-value=15 Score=26.02 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccH
Q 038070 51 PETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGI 86 (143)
Q Consensus 51 p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 86 (143)
-.+|+|.||..--...........-|+.|.=.|.|.
T Consensus 49 N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 49 NAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 357999998521101011233556799999999974
No 43
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=36.04 E-value=11 Score=26.17 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccHH---HHHHHHHHHHHHHHhhceEe
Q 038070 52 ETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGIQ---LALTVVKQVTAQLVHCFDWE 107 (143)
Q Consensus 52 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~---~a~~e~~~~l~~ll~~~~~~ 107 (143)
-+|+|+||-.---....+..+.+-|+.|.=.|.|.+ -|...++ -++.+|++..+.
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~~-~~~~~L~~~g~~ 86 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAVK-EIIKKLKDYGIK 86 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccCCHHHHHHHHH-HHHHHHHhcCCC
Confidence 479999984211111223457889999999999863 2233333 223445555443
No 44
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=35.51 E-value=46 Score=22.46 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=17.8
Q ss_pred ecCCeeeccEEeCCCcEEEecc
Q 038070 17 SMEDCTVNGFHIPKKSRVIVNA 38 (143)
Q Consensus 17 ~~~~~~~~g~~ip~g~~v~~~~ 38 (143)
..+|+.++|..||+|+.-+..+
T Consensus 52 f~~dv~igGk~l~AG~Ysl~ti 73 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTI 73 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEe
Confidence 4568999999999999766654
No 45
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.49 E-value=26 Score=24.32 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccHH-H--HHHHHHHHHHHHHhhceEe
Q 038070 52 ETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGIQ-L--ALTVVKQVTAQLVHCFDWE 107 (143)
Q Consensus 52 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~-~--a~~e~~~~l~~ll~~~~~~ 107 (143)
.+|+|++|=.---.........+-|+.|.=.|.|.. . |...++ -++.+|+++.+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~-~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAAR-KYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHH-HHHHHHHHcCCC
Confidence 589999984211111123446788999999999833 2 222222 334556665544
No 46
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=32.99 E-value=30 Score=21.06 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhceEecCCC
Q 038070 91 TVVKQVTAQLVHCFDWELPEG 111 (143)
Q Consensus 91 ~e~~~~l~~ll~~~~~~~~~~ 111 (143)
..|+-++..+|+-|||.+++-
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 457778999999999998763
No 47
>PRK00394 transcription factor; Reviewed
Probab=31.95 E-value=49 Score=23.05 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccH
Q 038070 52 ETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGI 86 (143)
Q Consensus 52 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 86 (143)
-+|+|+||-.---.......+.+-|..|.=.|.|.
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa 62 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA 62 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence 47999998431111122345788999999999983
No 48
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=31.93 E-value=48 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.0
Q ss_pred ecCCeeeccEEeCCCcEEEe
Q 038070 17 SMEDCTVNGFHIPKKSRVIV 36 (143)
Q Consensus 17 ~~~~~~~~g~~ip~g~~v~~ 36 (143)
..+|+.++|..||+||.+.-
T Consensus 278 Lle~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 278 LLEPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred EcCceeeCCEEecCCCEEEE
Confidence 45688889999999997654
No 49
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=28.03 E-value=42 Score=18.97 Aligned_cols=7 Identities=43% Similarity=0.724 Sum_probs=5.5
Q ss_pred CCCCCCC
Q 038070 55 FPERFVG 61 (143)
Q Consensus 55 ~P~R~l~ 61 (143)
||||||.
T Consensus 44 DPERWLP 50 (59)
T PF08492_consen 44 DPERWLP 50 (59)
T ss_pred CccccCc
Confidence 7888885
No 50
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=26.08 E-value=16 Score=17.08 Aligned_cols=7 Identities=57% Similarity=1.043 Sum_probs=4.3
Q ss_pred CCCCCCC
Q 038070 54 FFPERFV 60 (143)
Q Consensus 54 F~P~R~l 60 (143)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677763
No 51
>PLN00062 TATA-box-binding protein; Provisional
Probab=24.22 E-value=22 Score=24.87 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCCCCCCCCCCCCCCCCCcceeeccCCCCCcCccHH-H--HHHHHHHHHHHHHhhceE
Q 038070 52 ETFFPERFVGSSVDVLGHDFQLLPFGSGRRGCPGIQ-L--ALTVVKQVTAQLVHCFDW 106 (143)
Q Consensus 52 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~~-~--a~~e~~~~l~~ll~~~~~ 106 (143)
-+|+||+|=.---.........+-|+.|.=.|-|.. . |...+ --++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~-~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAA-RKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHH-HHHHHHHHHcCC
Confidence 589999984211111123457889999999999853 2 22222 233455666554
No 52
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=22.26 E-value=81 Score=20.44 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=16.9
Q ss_pred CCcCccHHHHHHHHHHHHHHHHh
Q 038070 80 RRGCPGIQLALTVVKQVTAQLVH 102 (143)
Q Consensus 80 ~r~C~G~~~a~~e~~~~l~~ll~ 102 (143)
.|.|+|.-++....+.++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 37899999999988888877643
No 53
>PHA03162 hypothetical protein; Provisional
Probab=21.50 E-value=62 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=16.8
Q ss_pred CCCCCcCccHHHHHHHHHHHHHHH
Q 038070 77 GSGRRGCPGIQLALTVVKQVTAQL 100 (143)
Q Consensus 77 g~G~r~C~G~~~a~~e~~~~l~~l 100 (143)
++|.+.||++...+-|+..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999887666665544443
No 54
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=20.64 E-value=47 Score=18.43 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=10.2
Q ss_pred ccCCCCCcCc--cHH
Q 038070 75 PFGSGRRGCP--GIQ 87 (143)
Q Consensus 75 ~Fg~G~r~C~--G~~ 87 (143)
-||-|.|.|. |..
T Consensus 11 ~yGkGsr~C~vCg~~ 25 (54)
T PTZ00218 11 TYGKGSRQCRVCSNR 25 (54)
T ss_pred cCCCCCCeeecCCCc
Confidence 4899999996 654
No 55
>PF15442 DUF4629: Domain of unknown function (DUF4629)
Probab=20.04 E-value=48 Score=22.49 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=8.6
Q ss_pred CCCcCccHHH
Q 038070 79 GRRGCPGIQL 88 (143)
Q Consensus 79 G~r~C~G~~~ 88 (143)
-||.|+|+++
T Consensus 127 kPRs~LgMHM 136 (150)
T PF15442_consen 127 KPRSCLGMHM 136 (150)
T ss_pred CcccccchHH
Confidence 3999999995
Done!