Query 038071
Match_columns 93
No_of_seqs 101 out of 421
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 99.9 4.6E-24 1E-28 164.0 4.5 56 37-92 9-67 (304)
2 smart00415 HSF heat shock fact 99.8 4.4E-20 9.6E-25 124.7 2.0 54 39-92 1-57 (105)
3 COG5169 HSF1 Heat shock transc 99.8 2E-19 4.4E-24 141.2 2.2 57 36-92 6-65 (282)
4 PF00447 HSF_DNA-bind: HSF-typ 99.8 1E-19 2.3E-24 121.6 0.4 51 42-92 1-54 (103)
5 PF00178 Ets: Ets-domain; Int 93.9 0.016 3.5E-07 38.5 0.1 30 47-76 8-41 (85)
6 smart00413 ETS erythroblast tr 92.3 0.085 1.8E-06 35.7 1.7 30 47-76 8-41 (87)
7 KOG3806 Predicted transcriptio 87.5 0.35 7.6E-06 36.5 1.6 31 47-77 75-109 (177)
8 PF07676 PD40: WD40-like Beta 40.4 7.4 0.00016 20.8 -0.4 20 50-69 4-23 (39)
9 cd00484 PEPCK_ATP Phosphoenolp 30.5 29 0.00062 30.1 1.4 28 49-76 46-73 (508)
10 PHA00520 packaging NTPase P4 25.7 82 0.0018 26.1 3.2 46 36-81 133-180 (330)
11 PTZ00311 phosphoenolpyruvate c 22.8 47 0.001 29.2 1.4 30 47-76 86-115 (561)
12 PF13132 DUF3950: Domain of un 22.2 26 0.00056 19.6 -0.2 8 84-91 13-20 (30)
13 TIGR00224 pckA phosphoenolpyru 22.0 47 0.001 29.0 1.2 26 49-74 69-94 (532)
14 PF15159 PIG-Y: Phosphatidylin 21.3 32 0.00068 22.4 0.0 14 43-56 14-27 (72)
15 PF12657 TFIIIC_delta: Transcr 20.4 65 0.0014 22.8 1.5 16 54-69 4-19 (173)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=99.89 E-value=4.6e-24 Score=164.02 Aligned_cols=56 Identities=30% Similarity=0.506 Sum_probs=53.7
Q ss_pred CCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 37 EVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 37 ~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
.+++|+||+|||+||+||++|++|+||++|+|| |+.+|++.+||+||||+||+||-
T Consensus 9 ~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFv 67 (304)
T KOG0627|consen 9 ASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFV 67 (304)
T ss_pred cCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCcccee
Confidence 348999999999999999999999999999999 99999999999999999999984
No 2
>smart00415 HSF heat shock factor.
Probab=99.78 E-value=4.4e-20 Score=124.71 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=51.7
Q ss_pred CCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 39 GSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 39 ~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
++|.|+.|||+||+|+..+++|+|+++|++| |+..|.+.|||+||||+||+||.
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~ 57 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFV 57 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHH
Confidence 4789999999999999999999999999999 89999999999999999999983
No 3
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.76 E-value=2e-19 Score=141.16 Aligned_cols=57 Identities=14% Similarity=0.256 Sum_probs=53.1
Q ss_pred CCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 36 NEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 36 ~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
+-..++.|++|||.||+||++.++|+|+++|+|| ++++|++.|||+||||+||+||.
T Consensus 6 ~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFV 65 (282)
T COG5169 6 RWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFV 65 (282)
T ss_pred CCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHH
Confidence 3455678999999999999999999999999999 99999999999999999999983
No 4
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=99.75 E-value=1e-19 Score=121.56 Aligned_cols=51 Identities=24% Similarity=0.424 Sum_probs=46.3
Q ss_pred hHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 42 PFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 42 ~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
.|+.|||+||+|+.++++|+|+++|++| |+.+|++.|||+||||+||+||.
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~ 54 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFV 54 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHH
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceee
Confidence 4999999999999999999999999999 89999999999999999999984
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=93.95 E-value=0.016 Score=38.49 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=26.5
Q ss_pred hhhhhcCCCCCCceeecC-CCCCC---Cccchhh
Q 038071 47 IYEMVEDLETNPAVSWIS-SATEE---SRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk 76 (93)
+.++++|++..++|+|.. .+..| |++++++
T Consensus 8 Ll~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~ 41 (85)
T PF00178_consen 8 LLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVAR 41 (85)
T ss_dssp HHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHH
T ss_pred HHHHhcCccCCCeeEeeccCCCeEEecCHHHHHH
Confidence 457899999999999999 89999 8888876
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=92.33 E-value=0.085 Score=35.69 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=24.9
Q ss_pred hhhhhcCCCCCCceeecC-CCCCC---Cccchhh
Q 038071 47 IYEMVEDLETNPAVSWIS-SATEE---SRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk 76 (93)
|.+++.||+..++|+|.. ++..| |+++.|+
T Consensus 8 L~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~ 41 (87)
T smart00413 8 LLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVAR 41 (87)
T ss_pred HHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHH
Confidence 357899999999999998 57788 7877666
No 7
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=87.48 E-value=0.35 Score=36.53 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=26.1
Q ss_pred hhhhhcCCCCCCceeecC-CCCCC---Cccchhhh
Q 038071 47 IYEMVEDLETNPAVSWIS-SATEE---SRQSDSKR 77 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~-~G~SF---~~~~Fsk~ 77 (93)
|-++++|.+..++|+|+. +|-.| ||++.+|.
T Consensus 75 LleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArl 109 (177)
T KOG3806|consen 75 LLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARL 109 (177)
T ss_pred HHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHH
Confidence 346789999999999998 68789 88888874
No 8
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=40.41 E-value=7.4 Score=20.80 Aligned_cols=20 Identities=5% Similarity=0.179 Sum_probs=14.5
Q ss_pred hhcCCCCCCceeecCCCCCC
Q 038071 50 MVEDLETNPAVSWISSATEE 69 (93)
Q Consensus 50 mVeDp~td~iIsWs~~G~SF 69 (93)
+++.+..+.-..||++|+.+
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i 23 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYI 23 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEE
T ss_pred cccCCccccCEEEecCCCEE
Confidence 56667777888999999976
No 9
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=30.51 E-value=29 Score=30.10 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.9
Q ss_pred hhhcCCCCCCceeecCCCCCCCccchhh
Q 038071 49 EMVEDLETNPAVSWISSATEESRQSDSK 76 (93)
Q Consensus 49 ~mVeDp~td~iIsWs~~G~SF~~~~Fsk 76 (93)
.+|+|+.+++-|.|++-++-|+++.|.+
T Consensus 46 fIV~~~~t~~~i~wg~vn~~~~~~~f~~ 73 (508)
T cd00484 46 FIVDEPSSEDDIWWGKVNQPISEETFEI 73 (508)
T ss_pred eEeCCCCccccccccccCcCCCHHHHHH
Confidence 5899999999999999999998887755
No 10
>PHA00520 packaging NTPase P4
Probab=25.69 E-value=82 Score=26.07 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=37.3
Q ss_pred CCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC--Cccchhhhhhcc
Q 038071 36 NEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE--SRQSDSKRINSK 81 (93)
Q Consensus 36 ~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF--~~~~Fsk~iLPk 81 (93)
..+|-.||+.-+=++|-.-.-..+|+|++-+..| +-+-|+-.+|-.
T Consensus 133 t~sGKT~~~na~a~~vgg~d~y~vIR~GEp~~~Y~td~~~~~~~~l~a 180 (330)
T PHA00520 133 TGSGKTPLLNALAPDVGGGDKYAVIRWGEPLEGYDTDLHVFAALILAA 180 (330)
T ss_pred CCCCCchhhhhhhhhhcCCCceeEEEecCcccccCchhHHHHHHHHHH
Confidence 4678899999999999777788899999999999 556676666543
No 11
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=22.79 E-value=47 Score=29.18 Aligned_cols=30 Identities=13% Similarity=0.073 Sum_probs=25.9
Q ss_pred hhhhhcCCCCCCceeecCCCCCCCccchhh
Q 038071 47 IYEMVEDLETNPAVSWISSATEESRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G~SF~~~~Fsk 76 (93)
.-.+|+|+.+++-|-|++.+.-|+++.|.+
T Consensus 86 DKfIV~~~~~~d~i~Wg~vN~p~~~~~f~~ 115 (561)
T PTZ00311 86 DKRIVKEDSSEDDIWWGKVNIPLSEESFEI 115 (561)
T ss_pred ceEEeCCCCcccccccCccCccCCHHHHHH
Confidence 346899999999999999999998887764
No 12
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=22.25 E-value=26 Score=19.59 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=6.0
Q ss_pred CCCCCCcc
Q 038071 84 RSCPLQIW 91 (93)
Q Consensus 84 KH~Nfss~ 91 (93)
+..|||+|
T Consensus 13 ~~~NFSaW 20 (30)
T PF13132_consen 13 GSGNFSAW 20 (30)
T ss_pred cCcChHHH
Confidence 36788888
No 13
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=22.02 E-value=47 Score=29.02 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.4
Q ss_pred hhhcCCCCCCceeecCCCCCCCccch
Q 038071 49 EMVEDLETNPAVSWISSATEESRQSD 74 (93)
Q Consensus 49 ~mVeDp~td~iIsWs~~G~SF~~~~F 74 (93)
.+|+|+.+.+-|-|++-+..|++..|
T Consensus 69 ~IV~~~~t~~~i~Wg~vN~p~~~~~f 94 (532)
T TIGR00224 69 YIVEDETTKDTIWWGPVNKPLSEETW 94 (532)
T ss_pred EEeCCCCcccccccCcCCcCCCHHHH
Confidence 57999999999999999999977766
No 14
>PF15159 PIG-Y: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Probab=21.29 E-value=32 Score=22.36 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=8.2
Q ss_pred HHHHhhhhhcCCCC
Q 038071 43 FLRKIYEMVEDLET 56 (93)
Q Consensus 43 Fl~KtY~mVeDp~t 56 (93)
|+-=+|.+|-+...
T Consensus 14 fv~~~y~~v~s~~~ 27 (72)
T PF15159_consen 14 FVGFFYAAVFSKLL 27 (72)
T ss_pred HHHHHHHHHHcCCC
Confidence 55556777665443
No 15
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=20.43 E-value=65 Score=22.77 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=12.8
Q ss_pred CCCCCceeecCCCCCC
Q 038071 54 LETNPAVSWISSATEE 69 (93)
Q Consensus 54 p~td~iIsWs~~G~SF 69 (93)
|+..+-|+||.+|.=-
T Consensus 4 ps~~~~l~WS~Dg~la 19 (173)
T PF12657_consen 4 PSCPNALAWSEDGQLA 19 (173)
T ss_pred CCCCcCeeECCCCCEE
Confidence 5667889999999754
Done!