Query 038071
Match_columns 93
No_of_seqs 101 out of 421
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hks_A Heat-shock transcriptio 99.9 8.4E-25 2.9E-29 147.8 2.6 55 38-92 2-59 (106)
2 2ldu_A Heat shock factor prote 99.9 1.4E-23 4.6E-28 146.2 1.8 58 35-92 12-72 (125)
3 3hts_B Heat shock transcriptio 99.9 3.2E-23 1.1E-27 141.0 0.8 57 36-92 8-67 (102)
4 1fli_A FLI-1; transcription/DN 91.7 0.092 3.1E-06 35.2 2.2 33 41-76 9-44 (98)
5 1awc_A Protein (GA binding pro 89.9 0.11 3.7E-06 35.5 1.3 31 47-77 7-40 (110)
6 1bc8_C SAP-1, protein (SAP-1 E 89.9 0.081 2.8E-06 35.1 0.6 31 47-77 11-44 (93)
7 2ypr_A Protein FEV; transcript 89.1 0.11 3.6E-06 35.0 0.8 30 47-76 14-46 (102)
8 4avp_A ETS translocation varia 87.8 0.14 4.9E-06 34.6 0.7 33 44-76 15-50 (106)
9 1gvj_A C-ETS-1 protein, P54; t 83.5 0.32 1.1E-05 34.7 0.8 41 37-77 36-79 (146)
10 1hbx_G ETS-domain protein ELK- 82.6 0.35 1.2E-05 34.9 0.8 31 47-77 12-45 (157)
11 2nny_A C-ETS-1 protein, P54; p 80.2 0.42 1.4E-05 34.9 0.5 41 37-77 61-104 (171)
12 2dao_A Transcription factor ET 80.1 0.27 9.3E-06 33.9 -0.6 34 44-77 12-49 (118)
13 1yo5_C SAM pointed domain cont 78.1 0.32 1.1E-05 32.4 -0.6 33 45-77 15-52 (97)
14 2lf8_A Transcription factor ET 79.4 0.45 1.5E-05 33.3 0.0 30 47-76 11-44 (128)
15 1pue_E Protein (transcription 75.3 0.67 2.3E-05 30.3 0.3 30 47-76 8-43 (89)
16 3jtg_A ETS-related transcripti 71.3 1.1 3.7E-05 30.0 0.6 30 47-76 11-45 (103)
17 1wwx_A E74-like factor 5 ESE-2 67.7 2.4 8.2E-05 28.6 1.7 39 39-77 7-50 (107)
18 3cue_D Transport protein parti 34.5 28 0.00097 25.0 2.9 53 40-93 86-145 (193)
19 1zw8_A Zinc-responsive transcr 20.4 54 0.0018 18.8 1.8 24 61-84 5-29 (64)
No 1
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=99.90 E-value=8.4e-25 Score=147.83 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=53.1
Q ss_pred CCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 38 VGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 38 ~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
+++|+|+.|||+||+||+++++|+|+++|+|| |+.+|+++|||+||||+||+||.
T Consensus 2 ~~~p~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFv 59 (106)
T 1hks_A 2 SGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFI 59 (106)
T ss_dssp TTCCTTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTSTTTTSCCCHHHHH
T ss_pred CCcCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhHHhcCCCcHHHHH
Confidence 67899999999999999999999999999999 99999999999999999999984
No 2
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-23 Score=146.21 Aligned_cols=58 Identities=19% Similarity=0.370 Sum_probs=54.9
Q ss_pred cCCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 35 LNEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 35 ~~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
.....+|+|+.|||+||+||.++++|+|+++|++| |+.+|+++|||+||||+||+||.
T Consensus 12 ~~~~~~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFv 72 (125)
T 2ldu_A 12 AGPSNVPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFV 72 (125)
T ss_dssp CSSCCCCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ccCCCCCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHHhcCCCcHHHHH
Confidence 34678899999999999999999999999999999 99999999999999999999984
No 3
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=99.86 E-value=3.2e-23 Score=140.99 Aligned_cols=57 Identities=18% Similarity=0.395 Sum_probs=53.1
Q ss_pred CCCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---CccchhhhhhccCCCCCCCCccc
Q 038071 36 NEVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKRINSKEIRSCPLQIWC 92 (93)
Q Consensus 36 ~~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~iLPk~FKH~Nfss~~ 92 (93)
....+|+|+.|||+||+||.++++|+|+++|++| ++.+|+++|||+||||+||+||.
T Consensus 8 ~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFv 67 (102)
T 3hts_B 8 GSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFV 67 (102)
T ss_dssp --CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHHHHCSSCCHHHHH
T ss_pred CCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHHHhcCCCcHHHHH
Confidence 4567899999999999999999999999999999 89999999999999999999984
No 4
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=91.67 E-value=0.092 Score=35.19 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.5
Q ss_pred ChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071 41 PPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSK 76 (93)
Q Consensus 41 p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk 76 (93)
=.||. ++++|++..++|+|...+..| |+++.++
T Consensus 9 wqFL~---~LL~d~~~~~~I~W~~~~g~Fklvd~e~VAr 44 (98)
T 1fli_A 9 WQFLL---ELLSDSANASCITWEGTNGEFKMTDPDEVAR 44 (98)
T ss_dssp HHHHH---HHHHTCSSCSSEECTTSSSSCEECCHHHHHH
T ss_pred HHHHH---HHhcCcccCCCeEEeCCCCEEEEcCHHHHHH
Confidence 34554 567899999999999888889 8877776
No 5
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=89.94 E-value=0.11 Score=35.54 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=25.6
Q ss_pred hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071 47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR 77 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~ 77 (93)
|.++++|++..++|+|...+..| |+++.++.
T Consensus 7 LleLL~d~~~~~~I~W~~~~geFkl~d~e~VArl 40 (110)
T 1awc_A 7 LLELLTDKDARDCISWVGDEGEFKLNQPELVAQK 40 (110)
T ss_dssp HHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHH
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHH
Confidence 35789999999999999888788 77777663
No 6
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=89.89 E-value=0.081 Score=35.13 Aligned_cols=31 Identities=6% Similarity=0.289 Sum_probs=25.7
Q ss_pred hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071 47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR 77 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~ 77 (93)
|.++++|++..++|+|...+..| |+++.++.
T Consensus 11 L~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArl 44 (93)
T 1bc8_C 11 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARL 44 (93)
T ss_dssp HHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHH
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCHHHHHHH
Confidence 45789999999999999887788 88777663
No 7
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=89.15 E-value=0.11 Score=35.01 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=24.5
Q ss_pred hhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071 47 IYEMVEDLETNPAVSWISSATEE---SRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk 76 (93)
|.++++|++..++|+|...+..| |+++.++
T Consensus 14 Ll~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VAr 46 (102)
T 2ypr_A 14 LLELLADRANAGCIAWEGGHGEFKLTDPDEVAR 46 (102)
T ss_dssp HHHHHTCGGGTTTCEECSSTTEEECSSHHHHHH
T ss_pred HHHHhcCCCCCCcccccCCCceEEecChHHHHH
Confidence 34778999999999998877778 7777766
No 8
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=87.77 E-value=0.14 Score=34.56 Aligned_cols=33 Identities=9% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHhhhhhcCCCCCCceeecCCCCCC---Cccchhh
Q 038071 44 LRKIYEMVEDLETNPAVSWISSATEE---SRQSDSK 76 (93)
Q Consensus 44 l~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk 76 (93)
..=|.++++|++..++|+|...+..| ++++.++
T Consensus 15 wqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~ 50 (106)
T 4avp_A 15 WQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVAR 50 (106)
T ss_dssp HHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHH
T ss_pred HHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHH
Confidence 33345778999999999999988778 7777766
No 9
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=83.53 E-value=0.32 Score=34.72 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071 37 EVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKR 77 (93)
Q Consensus 37 ~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~ 77 (93)
.+|......=|.++++|++..++|+|...+..| |+++.++.
T Consensus 36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArl 79 (146)
T 1gvj_A 36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARR 79 (146)
T ss_dssp TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHH
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHH
Confidence 455555555566889999999999999887778 88877763
No 10
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=82.61 E-value=0.35 Score=34.89 Aligned_cols=31 Identities=6% Similarity=0.289 Sum_probs=25.9
Q ss_pred hhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071 47 IYEMVEDLETNPAVSWISSATEE---SRQSDSKR 77 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~ 77 (93)
|.+++.|++..++|+|...+.-| |+++.++.
T Consensus 12 LleLL~d~~~~~~I~Wt~~~geFklvdpe~VArL 45 (157)
T 1hbx_G 12 LLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARL 45 (157)
T ss_dssp TTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHH
T ss_pred HHHHhcCcccCCceEEeCCCCEEEecCcHHHHHH
Confidence 45789999999999999887788 88777764
No 11
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=80.16 E-value=0.42 Score=34.88 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCCChHHHHhhhhhcCCCCCCceeecCCCCCC---Cccchhhh
Q 038071 37 EVGSPPFLRKIYEMVEDLETNPAVSWISSATEE---SRQSDSKR 77 (93)
Q Consensus 37 ~~~~p~Fl~KtY~mVeDp~td~iIsWs~~G~SF---~~~~Fsk~ 77 (93)
.+|.-....=|.++++|+...++|+|...+..| |+++.|+.
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArl 104 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARR 104 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHH
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHH
Confidence 344444455556789999999999999887778 88777763
No 12
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.08 E-value=0.27 Score=33.94 Aligned_cols=34 Identities=9% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHHhhhhhcCCCCCCceeecCC-CCCC---Cccchhhh
Q 038071 44 LRKIYEMVEDLETNPAVSWISS-ATEE---SRQSDSKR 77 (93)
Q Consensus 44 l~KtY~mVeDp~td~iIsWs~~-G~SF---~~~~Fsk~ 77 (93)
..=|.++++|++..++|+|... +.-| |+++.++.
T Consensus 12 wqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArl 49 (118)
T 2dao_A 12 WDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARL 49 (118)
T ss_dssp HHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHH
T ss_pred HHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHH
Confidence 3345678899999999999974 4578 88777763
No 13
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=78.13 E-value=0.32 Score=32.42 Aligned_cols=33 Identities=6% Similarity=0.138 Sum_probs=24.4
Q ss_pred HHhhhhhcCCCC-CCceeecC-CCCCC---Cccchhhh
Q 038071 45 RKIYEMVEDLET-NPAVSWIS-SATEE---SRQSDSKR 77 (93)
Q Consensus 45 ~KtY~mVeDp~t-d~iIsWs~-~G~SF---~~~~Fsk~ 77 (93)
.=|.++++||++ .++|+|.. ++..| |+++.++.
T Consensus 15 qFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArl 52 (97)
T 1yo5_C 15 QFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARL 52 (97)
T ss_dssp HHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHH
T ss_pred HHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHH
Confidence 334578999875 79999984 56778 77777663
No 14
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=79.39 E-value=0.45 Score=33.30 Aligned_cols=30 Identities=10% Similarity=0.282 Sum_probs=23.7
Q ss_pred hhhhhcCCCCCCceeecCCC-CCC---Cccchhh
Q 038071 47 IYEMVEDLETNPAVSWISSA-TEE---SRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G-~SF---~~~~Fsk 76 (93)
|.+++.|++..++|+|...+ .-| |+++.++
T Consensus 11 LleLL~d~~~~~~I~Wt~k~~geFklvdpe~VAr 44 (128)
T 2lf8_A 11 VYQLLSDSRYENFIRWEDKESKIFRIVDPNGLAR 44 (128)
Confidence 45778999999999999754 478 7776665
No 15
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=75.28 E-value=0.67 Score=30.34 Aligned_cols=30 Identities=3% Similarity=0.282 Sum_probs=21.9
Q ss_pred hhhhhcCCCCCCceeecCCC-CCC-----Cccchhh
Q 038071 47 IYEMVEDLETNPAVSWISSA-TEE-----SRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~td~iIsWs~~G-~SF-----~~~~Fsk 76 (93)
|.++++|++..++|+|.... ..| ++++.|+
T Consensus 8 L~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VAr 43 (89)
T 1pue_E 8 LLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAH 43 (89)
T ss_dssp HHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHH
T ss_pred HHHHhcCcccCCceEeecCCCcEEEEecCChHHHHH
Confidence 34778999999999998643 446 4556555
No 16
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=71.30 E-value=1.1 Score=29.99 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=22.2
Q ss_pred hhhhhcCCC-CCCceeecCCC-CCC---Cccchhh
Q 038071 47 IYEMVEDLE-TNPAVSWISSA-TEE---SRQSDSK 76 (93)
Q Consensus 47 tY~mVeDp~-td~iIsWs~~G-~SF---~~~~Fsk 76 (93)
|.+++.|++ ..++|+|.... ..| |+++.++
T Consensus 11 L~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VAr 45 (103)
T 3jtg_A 11 IRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQ 45 (103)
T ss_dssp HHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHH
T ss_pred HHHHHcCcccCCCccccccCCCceEEecCHHHHHH
Confidence 346789988 46899999854 467 7777766
No 17
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=67.74 E-value=2.4 Score=28.64 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=26.6
Q ss_pred CCChHHHHhhhhhcCCCC-CCceeecCC-CCCC---Cccchhhh
Q 038071 39 GSPPFLRKIYEMVEDLET-NPAVSWISS-ATEE---SRQSDSKR 77 (93)
Q Consensus 39 ~~p~Fl~KtY~mVeDp~t-d~iIsWs~~-G~SF---~~~~Fsk~ 77 (93)
+......=|.+++.||++ .++|+|... ...| |+++.++.
T Consensus 7 g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArl 50 (107)
T 1wwx_A 7 GSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKM 50 (107)
T ss_dssp SSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHH
T ss_pred CcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHH
Confidence 333444445688999875 589999864 5667 88777663
No 18
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=34.55 E-value=28 Score=24.98 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=35.0
Q ss_pred CChHHHH-hhhhhcCCCCCCceeecCCCCCC----Cccchhhhh-hccCC-CCCCCCcccC
Q 038071 40 SPPFLRK-IYEMVEDLETNPAVSWISSATEE----SRQSDSKRI-NSKEI-RSCPLQIWCC 93 (93)
Q Consensus 40 ~p~Fl~K-tY~mVeDp~td~iIsWs~~G~SF----~~~~Fsk~i-LPk~F-KH~Nfss~~~ 93 (93)
..-||.| .|+|+=.- +.++..|+++++.| +...+..-+ ||+.. +.-||+.|-|
T Consensus 86 ~l~fI~k~~Wk~lfgk-~~d~L~~t~~~~~y~L~~d~nPl~~fv~lP~~~~~~l~y~~f~c 145 (193)
T 3cue_D 86 TSEVLSKCAFKIFLNI-TPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILC 145 (193)
T ss_dssp HHHHHHHHHHHHHSSC-CCCCBCCCTTSCCCBCCBSCCGGGSSCCCCTTTTTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccceecCCCCEEEEEECCchhhhheeCcHhHHhCcchhhhHH
Confidence 4568854 89999884 44566899999999 222222222 67766 6677877755
No 19
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}
Probab=20.45 E-value=54 Score=18.83 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=17.9
Q ss_pred eecCCCCCC-CccchhhhhhccCCC
Q 038071 61 SWISSATEE-SRQSDSKRINSKEIR 84 (93)
Q Consensus 61 sWs~~G~SF-~~~~Fsk~iLPk~FK 84 (93)
.|..-+.+| ++++|.+-|.-.+..
T Consensus 5 ~W~~C~~~f~~~~~l~~Hv~~~Hv~ 29 (64)
T 1zw8_A 5 KWKECPESASSLFDLQRHLLKDHVS 29 (64)
T ss_dssp CCTTCCCCCSSHHHHHHHHHHHSCC
T ss_pred eeCCCCCcCCCHHHHHHHHHhhccC
Confidence 588899999 788888777644443
Done!