BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038074
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 227/295 (76%), Positives = 269/295 (91%)
Query: 6 PENQKKISPLIALQELGELKIFRADLTDEASFDSPISGSDIVFHVATPVNFSSDDPETDM 65
P+NQKK+S L+ LQELG+LKIFRADLTDE SF++PI+G D VFHVATPV+F+S+DPE DM
Sbjct: 43 PDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDM 102
Query: 66 IMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINAQNVTGLVMGEKNWTDVEFLSSEK 125
I PAIQGVVNV+KACT+ K+V RVILTSSAAAV+IN + TGLV+ EKNWTD+EFL+S K
Sbjct: 103 IKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAK 162
Query: 126 PPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGPSLTPEIPSSVALAATLITGNE 185
PPTWGY ASKTLAE+AAWKFA+ENNIDLITVIP+LM+G SLT ++PSS+ LA +LITGNE
Sbjct: 163 PPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNE 222
Query: 186 FLLNDLKGMQMLSGSISIAHVEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNKR 245
FL+N +KGMQMLSGS+SIAHVEDVCRAHIF+AEKESASGRYICCA NTSVPELAKFL+KR
Sbjct: 223 FLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASGRYICCAANTSVPELAKFLSKR 282
Query: 246 FPEYKVPTDFGDFPSEAKLILSSEKLISEGFCFKYGIEDIYDQTVEYLKTKGMLK 300
+P+YKVPTDFGDFP ++KLI+SSEKL+ EGF FKYGIE+IYD++VEY K KG+L+
Sbjct: 283 YPQYKVPTDFGDFPPKSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 245 bits (626), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/296 (42%), Positives = 185/296 (62%), Gaps = 11/296 (3%)
Query: 6 PENQKKISPLIALQEL-GELKIFRADLTDEASFDSPISGSDIVFHVATPVNFSSDDPETD 64
P N KK+ L+ L + L +++ADL DE SFD I G VFHVATP++F S DPE +
Sbjct: 39 PTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENE 98
Query: 65 MIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINAQNVTGLVMGEKNWTDVEFLSSE 124
+I P I+G++ ++K+C KTV R++ TSSA V+I + V E W+D+EF ++
Sbjct: 99 VIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLP--VYDESCWSDMEFCRAK 156
Query: 125 KPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGPSLTPEIPSSVALAATLITGN 184
K W Y SKTLAE+AAWK+A+ENNID IT+IP+L+ GP + +P S+ A + ITGN
Sbjct: 157 KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGN 216
Query: 185 EFLLNDLKGMQMLSGSISIAHVEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNK 244
E + ++ Q + H++D+C AHI+L E A GRYIC + + + +LAK L +
Sbjct: 217 EAHYSIIRQGQFV-------HLDDLCNAHIYLFENPKAEGRYICSSHDCIILDLAKMLRE 269
Query: 245 RFPEYKVPTDFGDFPSEAK-LILSSEKLISEGFCFKYGIEDIYDQTVEYLKTKGML 299
++PEY +PT+F K + SS+KL GF FKY +ED++ V+ + KG+L
Sbjct: 270 KYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 200 bits (508), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 169/297 (56%), Gaps = 13/297 (4%)
Query: 6 PENQKKISPLIALQELGE-LKIFRADLTDEASFDSPISGSDIVFHVATPVNFSSDDPETD 64
PE ++ +S L L E L F ADL++ SF + I G +FH A+P++F+ +PE
Sbjct: 36 PERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEI 95
Query: 65 MIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINAQNVTGLVMGEKNWTDVEFLSSE 124
+ + G + +LKAC +KTV R I TSS +AVS N ++ V+ E +W+DV+ L S
Sbjct: 96 VTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKD--VLDESDWSDVDLLRSV 153
Query: 125 KPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGPSLTPEIPSSVALAATLITGN 184
KP W YA SKTLAE+A +F ++N ID++T+I + G + P++P S+ A L+ G
Sbjct: 154 KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLG- 212
Query: 185 EFLLNDLKGMQMLSGSISIAHVEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNK 244
K Q+ + HV+DV RAHI+L E GRY C + E+++ L+
Sbjct: 213 -------KKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSA 265
Query: 245 RFPEYKVPT--DFGDFPSEAKLILSSEKLISEGFCFKYGIEDIYDQTVEYLKTKGML 299
++PEY++ T + + L+++KL+ GF FKY IED++D ++ K KG L
Sbjct: 266 KYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 80/152 (52%), Gaps = 11/152 (7%)
Query: 30 DLTDEASFDSPISGSDIVFHVATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARV 89
D+ + ++D I G+ V H+A+ V+FS+ E ++ PAI G +N L+A T +V R
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDE--VVTPAIGGTLNALRAAAATPSVKRF 127
Query: 90 ILTSSAAAVSINAQNVTGLVMGEKNWT-----DVEFLSSEKPPT--WGYAASKTLAERAA 142
+LTSS + I NV G+ + EK+W + L P W YAASKT AE AA
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 143 WKFAQEN--NIDLITVIPSLMSGPSLTPEIPS 172
WKF EN + L V+P+ G PE S
Sbjct: 188 WKFMDENKPHFTLNAVLPNYTIGTIFDPETQS 219
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 30 DLTDEASFDSPISGSDIVFHVATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARV 89
D + ++D I G+ V H+A+ V+FS+ E ++ PAI G +N L+A T +V R
Sbjct: 70 DXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDE--VVTPAIGGTLNALRAAAATPSVKRF 127
Query: 90 ILTSSAAAVSINAQNVTGLVMGEKNWT-----DVEFLSSEKPPT--WGYAASKTLAERAA 142
+LTSS + I NV G+ + EK+W + L P W YAASKT AE AA
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 143 WKFAQEN--NIDLITVIPSLMSGPSLTPE 169
WKF EN + L V+P+ G PE
Sbjct: 188 WKFXDENKPHFTLNAVLPNYTIGTIFDPE 216
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/142 (19%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S+A + + ++
Sbjct: 90 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTAEVYGMCSDKYFDED 145
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 146 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 194
Query: 165 SL----TPEIPSSVALAATLIT 182
L I SS A+ ++
Sbjct: 195 RLDNLNAARIGSSRAITQLILN 216
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S++ + + ++
Sbjct: 77 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDED 132
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 133 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 181
Query: 165 SL----TPEIPSSVALAATLIT 182
L I SS A+ ++
Sbjct: 182 RLDNLNAARIGSSRAITQLILN 203
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S++ + + ++
Sbjct: 90 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDED 145
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 146 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 194
Query: 165 SL----TPEIPSSVALAATLIT 182
L I SS A+ ++
Sbjct: 195 RLDNLNAARIGSSRAITQLILN 216
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S++ + + ++
Sbjct: 90 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDED 145
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 146 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 194
Query: 165 SL----TPEIPSSVALAATLIT 182
L I SS A+ ++
Sbjct: 195 RLDNLNAARIGSSRAITQLILN 216
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S++ + + ++
Sbjct: 90 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDED 145
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 146 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 194
Query: 165 SL----TPEIPSSVALAATLIT 182
L I SS A+ ++
Sbjct: 195 RLDNLNAARIGSSRAITQLILN 216
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 24/142 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S++ + + ++
Sbjct: 90 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDED 145
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 146 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 194
Query: 165 SL----TPEIPSSVALAATLIT 182
L I SS A+ ++
Sbjct: 195 RLDNLNAARIGSSRAITQLILN 216
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 23 ELKIFRADLTDEASFDSPISGSDIVFHVAT--PVNFSSDDPETDMIMPAIQGVVNVLKAC 80
++ F D+ D + + G DI H A V + +P + I I G NV+ AC
Sbjct: 71 RMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNP-LECIKTNIMGASNVINAC 129
Query: 81 TKTKTVARVILTSSAAAVSINAQNVTGL 108
K + L++ AA IN T L
Sbjct: 130 LKNAISQVIALSTDKAANPINLYGATKL 157
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 113/289 (39%), Gaps = 45/289 (15%)
Query: 31 LTDEASFDSPISGSDIVFHVAT-PVNFSS-DDPETDMIMPAIQGVVNVLKACTKTKTVAR 88
+TD+A S D VFH+AT N SS DP D + LK + K R
Sbjct: 87 ITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADH----ENNTLTTLKLYERLKHFKR 142
Query: 89 V-ILTSSAAAVSINAQNVTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQ 147
+ + SAA SI + E+ TD+ L + P Y+ SK E + + +
Sbjct: 143 LKKVVYSAAGCSIAEKTFDDAKATEE--TDIVSLHNNDSP---YSMSKIFGEFYSVYYHK 197
Query: 148 ENNIDLITVI------PSLMSGPSLTPEIPSSVALAATLITGNEFLLNDLKGM--QMLSG 199
++ + + P + G P++V T F+ LKGM + +G
Sbjct: 198 QHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPT----FIYKALKGMPLPLENG 253
Query: 200 SISIAH---VEDVCRAHIFLAEKESASGRY-ICCAVNTSVPELAKFLNK---------RF 246
++ VEDV I A + G Y I TS+ +LA +N+ R
Sbjct: 254 GVATRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRL 313
Query: 247 PEYKVPTDFGDFPSEAKLILSSEKLISE-GFCFKYGIEDIYDQTVEYLK 294
P K P D + K S EK E GF I+D +T+E+ K
Sbjct: 314 P--KRPWD-----NSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTK 355
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 50 VATPVNFSSDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINA-----QN 104
+ATP+ ++ + + + + +++ C K + R+I S++ + + ++
Sbjct: 392 IATPIEYTRN--PLRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDED 447
Query: 105 VTGLVMGEKNWTDVEFLSSEKPPTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGP 164
+ L++G N P W Y+ SK L +R W + ++ + P GP
Sbjct: 448 HSNLIVGPVN-----------KPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGP 496
Query: 165 SL 166
L
Sbjct: 497 RL 498
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 58 SDDPETDMIMPAIQGVVNVLKACTKTKTVARVILTSSAAAVSINAQ 103
DPE + + PAI+ V++ L+ + V R++L A ++NA+
Sbjct: 188 HQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNAR 233
>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|B Chain B, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|C Chain C, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|D Chain D, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|E Chain E, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
pdb|3SLG|F Chain F, Crystal Structure Of Pbgp3 Protein From Burkholderia
Pseudomallei
Length = 372
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 127 PTWGYAASKTLAERAAWKFAQENNIDLITVIPSLMSGPSL----TPEIPSSVALAATLIT 182
P W YA SK L +R W + E ++ P GP L TP+ SS +
Sbjct: 168 PRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVT----- 221
Query: 183 GNEFLLNDLKG--MQMLSGS---ISIAHVEDVCRAHIFLAEKES--ASGRYICCA---VN 232
+FL + ++G + ++ G + +V+D A + + E + A+G+ N
Sbjct: 222 --QFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNN 279
Query: 233 TSVPELAKF---LNKRFPEY 249
SV ELA L FPEY
Sbjct: 280 FSVRELANKMLELAAEFPEY 299
>pdb|3GS2|A Chain A, Ring1b C-Terminal DomainCBX7 CBOX COMPLEX
pdb|3GS2|C Chain C, Ring1b C-Terminal DomainCBX7 CBOX COMPLEX
pdb|3IXS|A Chain A, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|C Chain C, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|E Chain E, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|G Chain G, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|I Chain I, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
pdb|3IXS|K Chain K, Ring1b C-Terminal DomainRYBP C-Terminal Domain Complex
Length = 111
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 204 AHVEDVCRAHIFLAEKE-SASGRYICCAVNTSVPELAKFLNKRF 246
+ +E V R H L EK+ SA RYI + N +V L+K+L R
Sbjct: 2 SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRL 45
>pdb|3H8H|A Chain A, Structure Of The C-Terminal Domain Of Human Rnf2RING1B
Length = 112
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 204 AHVEDVCRAHIFLAEKE-SASGRYICCAVNTSVPELAKFLNKRF 246
+ +E V R H L EK+ SA RYI + N +V L+K+L R
Sbjct: 6 SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRL 49
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 206 VEDVCRAHIFLAEKESASGRYICCAVNTSVPELAKFLNKRFPEYKVPTDFGDFPSEAKL- 264
++D+ + FL KE I C PE A L Y V FGD+ E
Sbjct: 93 IQDITQKLFFLQVKEGILSDEIYCP-----PETAVLLG----SYAVQAKFGDYNKEVHKS 143
Query: 265 -ILSSEKLISEGFCFKYGI-EDIYDQTVE--YLKTKGMLK 300
LSSE+LI + ++ + D ++ ++ + + +GMLK
Sbjct: 144 GYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLK 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,471,980
Number of Sequences: 62578
Number of extensions: 334258
Number of successful extensions: 1262
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 30
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)