Query 038076
Match_columns 345
No_of_seqs 246 out of 2350
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:19:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04457 spermidine synthase; 100.0 4.6E-34 9.9E-39 268.1 23.5 207 86-318 11-219 (262)
2 PLN02823 spermine synthase 100.0 1.4E-30 2.9E-35 251.8 21.5 215 80-318 47-269 (336)
3 PF01564 Spermine_synth: Sperm 100.0 5E-31 1.1E-35 245.3 16.9 212 81-318 21-239 (246)
4 PRK00811 spermidine synthase; 100.0 9.9E-30 2.1E-34 241.3 20.8 213 80-317 20-238 (283)
5 PLN02366 spermidine synthase 100.0 1.8E-29 3.8E-34 241.6 21.0 211 82-317 37-254 (308)
6 PRK01581 speE spermidine synth 100.0 7.3E-29 1.6E-33 239.4 21.3 217 79-319 95-316 (374)
7 COG0421 SpeE Spermidine syntha 100.0 4.8E-28 1E-32 228.4 21.3 203 81-308 21-227 (282)
8 PRK03612 spermidine synthase; 99.9 2.4E-27 5.2E-32 242.2 16.6 215 79-318 237-461 (521)
9 TIGR00417 speE spermidine synt 99.9 3.6E-26 7.8E-31 215.5 21.1 210 81-316 17-232 (270)
10 COG4262 Predicted spermidine s 99.9 4.3E-25 9.3E-30 209.3 16.5 226 69-318 223-453 (508)
11 PRK00536 speE spermidine synth 99.9 7.3E-25 1.6E-29 204.7 17.8 194 82-317 19-216 (262)
12 PF12847 Methyltransf_18: Meth 99.7 1.8E-16 3.8E-21 128.7 7.9 111 140-257 1-111 (112)
13 KOG2352 Predicted spermine/spe 99.6 6E-16 1.3E-20 153.1 7.7 172 120-318 266-457 (482)
14 KOG1562 Spermidine synthase [A 99.6 1.1E-15 2.5E-20 142.2 7.9 209 82-315 67-281 (337)
15 PF13659 Methyltransf_26: Meth 99.4 3.2E-13 6.9E-18 110.4 8.8 110 142-258 2-116 (117)
16 PRK00107 gidB 16S rRNA methylt 99.4 3E-12 6.4E-17 114.6 15.1 112 130-258 35-146 (187)
17 COG4122 Predicted O-methyltran 99.4 8.3E-13 1.8E-17 120.3 10.6 108 138-258 57-168 (219)
18 PF05175 MTS: Methyltransferas 99.4 1.1E-12 2.4E-17 115.3 11.0 111 140-259 31-142 (170)
19 TIGR02469 CbiT precorrin-6Y C5 99.4 3.1E-12 6.6E-17 105.0 12.5 106 139-258 18-123 (124)
20 PF01596 Methyltransf_3: O-met 99.4 2.6E-13 5.6E-18 123.1 5.5 106 138-256 43-154 (205)
21 PLN02781 Probable caffeoyl-CoA 99.4 1.8E-12 3.8E-17 120.0 9.2 105 138-255 66-176 (234)
22 PLN02476 O-methyltransferase 99.4 2.5E-12 5.4E-17 121.4 9.6 106 138-256 116-227 (278)
23 PRK08287 cobalt-precorrin-6Y C 99.3 4.7E-11 1E-15 106.3 15.4 106 139-261 30-135 (187)
24 TIGR00138 gidB 16S rRNA methyl 99.3 1.7E-11 3.7E-16 109.1 12.4 102 140-258 42-143 (181)
25 PRK00121 trmB tRNA (guanine-N( 99.3 1.4E-11 3.1E-16 111.4 11.7 112 140-258 40-157 (202)
26 COG2521 Predicted archaeal met 99.3 1.9E-11 4.2E-16 110.9 12.3 156 123-298 115-274 (287)
27 COG4123 Predicted O-methyltran 99.3 4.6E-11 1E-15 110.6 14.8 151 139-315 43-210 (248)
28 PF13847 Methyltransf_31: Meth 99.3 1.2E-11 2.5E-16 106.4 10.1 107 140-259 3-112 (152)
29 PLN03075 nicotianamine synthas 99.3 2.4E-11 5.1E-16 115.5 13.0 150 140-318 123-276 (296)
30 TIGR00091 tRNA (guanine-N(7)-) 99.3 2E-11 4.3E-16 109.6 11.2 112 140-258 16-133 (194)
31 PRK15001 SAM-dependent 23S rib 99.3 6.1E-11 1.3E-15 116.7 15.2 111 141-257 229-340 (378)
32 TIGR03533 L3_gln_methyl protei 99.3 5.1E-11 1.1E-15 113.3 14.1 112 140-259 121-253 (284)
33 PF08241 Methyltransf_11: Meth 99.3 1.9E-11 4.1E-16 95.1 9.2 95 145-255 1-95 (95)
34 PRK14103 trans-aconitate 2-met 99.3 3.1E-11 6.8E-16 112.7 12.2 101 139-259 28-128 (255)
35 PLN02589 caffeoyl-CoA O-methyl 99.3 1.3E-11 2.7E-16 115.0 9.1 105 139-256 78-189 (247)
36 COG2226 UbiE Methylase involve 99.3 1E-10 2.3E-15 108.0 14.9 119 132-262 43-161 (238)
37 COG4106 Tam Trans-aconitate me 99.3 2.8E-11 6.1E-16 108.7 9.9 106 139-262 29-134 (257)
38 PRK01683 trans-aconitate 2-met 99.3 9.4E-11 2E-15 109.4 13.9 103 139-259 30-132 (258)
39 COG2242 CobL Precorrin-6B meth 99.3 2E-10 4.3E-15 101.7 14.9 109 138-262 32-140 (187)
40 PRK07402 precorrin-6B methylas 99.2 1.6E-10 3.5E-15 103.6 13.0 107 139-260 39-145 (196)
41 PRK00377 cbiT cobalt-precorrin 99.2 1.1E-10 2.3E-15 105.1 11.8 107 139-258 39-146 (198)
42 PRK13944 protein-L-isoaspartat 99.2 1.9E-10 4.1E-15 104.2 13.1 103 139-258 71-174 (205)
43 PRK09489 rsmC 16S ribosomal RN 99.2 2.8E-10 6.1E-15 110.9 15.1 107 141-258 197-304 (342)
44 TIGR02752 MenG_heptapren 2-hep 99.2 2.1E-10 4.6E-15 105.1 13.3 108 139-258 44-152 (231)
45 PF13649 Methyltransf_25: Meth 99.2 1.9E-11 4.2E-16 97.8 5.6 96 144-251 1-101 (101)
46 PRK15451 tRNA cmo(5)U34 methyl 99.2 7E-11 1.5E-15 110.0 9.9 107 139-256 55-163 (247)
47 PRK11036 putative S-adenosyl-L 99.2 7.5E-11 1.6E-15 110.2 9.8 110 139-260 43-152 (255)
48 PLN02233 ubiquinone biosynthes 99.2 3.8E-10 8.3E-15 106.0 14.6 114 139-261 72-186 (261)
49 TIGR00080 pimt protein-L-isoas 99.2 1.9E-10 4E-15 104.9 12.1 104 138-259 75-179 (215)
50 PF01209 Ubie_methyltran: ubiE 99.2 6.8E-11 1.5E-15 109.4 9.3 111 139-261 46-157 (233)
51 PRK11805 N5-glutamine S-adenos 99.2 1.8E-10 3.8E-15 110.8 12.3 110 142-259 135-265 (307)
52 TIGR00537 hemK_rel_arch HemK-r 99.2 1.2E-09 2.6E-14 96.5 16.3 110 139-261 18-144 (179)
53 PLN02396 hexaprenyldihydroxybe 99.2 1.2E-10 2.6E-15 112.6 10.6 108 140-261 131-239 (322)
54 COG2227 UbiG 2-polyprenyl-3-me 99.2 6.2E-11 1.3E-15 108.5 7.9 107 140-262 59-166 (243)
55 PRK13942 protein-L-isoaspartat 99.2 3.2E-10 6.9E-15 103.4 12.5 104 138-259 74-178 (212)
56 PLN02244 tocopherol O-methyltr 99.2 2.8E-10 6E-15 111.0 12.7 109 139-259 117-225 (340)
57 TIGR00740 methyltransferase, p 99.2 4.5E-10 9.8E-15 103.8 13.0 109 139-258 52-162 (239)
58 PRK04266 fibrillarin; Provisio 99.1 1.9E-09 4.1E-14 99.3 16.7 138 139-302 71-211 (226)
59 COG2519 GCD14 tRNA(1-methylade 99.1 3.3E-10 7.2E-15 104.5 11.4 121 138-294 92-214 (256)
60 PRK09328 N5-glutamine S-adenos 99.1 2E-09 4.3E-14 101.1 16.8 111 139-258 107-239 (275)
61 COG2518 Pcm Protein-L-isoaspar 99.1 3.1E-10 6.7E-15 102.4 10.3 105 134-258 66-170 (209)
62 PF08242 Methyltransf_12: Meth 99.1 1.3E-11 2.8E-16 98.3 1.1 98 145-253 1-99 (99)
63 TIGR00438 rrmJ cell division p 99.1 1.4E-09 3.1E-14 96.9 14.4 131 135-303 27-172 (188)
64 COG2813 RsmC 16S RNA G1207 met 99.1 1.5E-09 3.2E-14 102.8 14.7 125 141-298 159-284 (300)
65 smart00828 PKS_MT Methyltransf 99.1 4.1E-10 9E-15 102.7 10.6 105 142-258 1-105 (224)
66 TIGR03534 RF_mod_PrmC protein- 99.1 9.5E-10 2.1E-14 101.6 13.0 110 140-258 87-218 (251)
67 COG2230 Cfa Cyclopropane fatty 99.1 7.3E-10 1.6E-14 104.4 11.9 148 101-262 29-181 (283)
68 PF02353 CMAS: Mycolic acid cy 99.1 5.1E-10 1.1E-14 105.9 10.6 111 138-262 60-171 (273)
69 PRK11188 rrmJ 23S rRNA methylt 99.1 1.3E-09 2.9E-14 99.1 13.0 125 139-301 50-189 (209)
70 PTZ00098 phosphoethanolamine N 99.1 1.3E-09 2.8E-14 102.6 13.3 109 138-260 50-159 (263)
71 TIGR02072 BioC biotin biosynth 99.1 8.6E-10 1.9E-14 100.5 11.7 106 140-261 34-139 (240)
72 PRK11207 tellurite resistance 99.1 8.8E-10 1.9E-14 99.3 11.3 107 139-258 29-136 (197)
73 TIGR03704 PrmC_rel_meth putati 99.1 1.3E-09 2.8E-14 102.0 12.8 108 141-258 87-217 (251)
74 TIGR00406 prmA ribosomal prote 99.1 1.3E-09 2.9E-14 103.8 12.9 120 139-294 158-277 (288)
75 TIGR00536 hemK_fam HemK family 99.1 1.5E-09 3.3E-14 103.2 12.6 111 142-260 116-247 (284)
76 PRK14968 putative methyltransf 99.1 7.1E-09 1.5E-13 91.4 15.7 113 139-260 22-151 (188)
77 PRK10258 biotin biosynthesis p 99.1 3.5E-09 7.5E-14 98.5 14.3 103 140-261 42-144 (251)
78 PRK14967 putative methyltransf 99.1 2.8E-09 6.1E-14 97.6 13.5 110 139-259 35-161 (223)
79 PF08704 GCD14: tRNA methyltra 99.0 1.4E-09 3E-14 101.3 10.2 129 137-300 37-170 (247)
80 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.1E-09 4.5E-14 105.9 12.0 112 141-259 123-237 (390)
81 PRK14966 unknown domain/N5-glu 99.0 3.7E-09 8E-14 104.8 13.7 112 140-259 251-383 (423)
82 TIGR02716 C20_methyl_CrtF C-20 99.0 2.6E-09 5.7E-14 102.4 12.2 106 139-256 148-253 (306)
83 PRK00216 ubiE ubiquinone/menaq 99.0 4.9E-09 1.1E-13 95.7 13.5 109 140-259 51-160 (239)
84 PRK08317 hypothetical protein; 99.0 4.7E-09 1E-13 95.4 13.2 107 138-257 17-124 (241)
85 PRK14902 16S rRNA methyltransf 99.0 8.6E-09 1.9E-13 104.0 16.4 117 139-262 249-384 (444)
86 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 4.8E-09 1E-13 94.7 13.1 106 139-258 38-144 (223)
87 cd02440 AdoMet_MTases S-adenos 99.0 3.8E-09 8.3E-14 81.6 10.7 103 143-256 1-103 (107)
88 TIGR00477 tehB tellurite resis 99.0 2.4E-09 5.2E-14 96.3 10.5 105 139-257 29-133 (195)
89 PRK00517 prmA ribosomal protei 99.0 4.2E-09 9.1E-14 98.3 12.4 97 139-258 118-214 (250)
90 PLN02490 MPBQ/MSBQ methyltrans 99.0 2.8E-09 6.1E-14 103.6 11.5 102 140-256 113-214 (340)
91 PRK10909 rsmD 16S rRNA m(2)G96 99.0 4.2E-09 9E-14 95.2 11.7 108 140-260 53-162 (199)
92 PRK01544 bifunctional N5-gluta 99.0 9.7E-09 2.1E-13 105.2 15.7 110 141-258 139-270 (506)
93 PLN02336 phosphoethanolamine N 99.0 8E-09 1.7E-13 104.8 14.9 109 139-261 265-373 (475)
94 PRK15128 23S rRNA m(5)C1962 me 99.0 7.9E-09 1.7E-13 102.7 14.3 112 139-256 219-338 (396)
95 PRK14903 16S rRNA methyltransf 99.0 9E-09 2E-13 103.4 14.8 117 139-262 236-371 (431)
96 PRK11873 arsM arsenite S-adeno 99.0 4.7E-09 1E-13 98.8 12.0 106 139-256 76-182 (272)
97 PRK00312 pcm protein-L-isoaspa 99.0 6.6E-09 1.4E-13 94.3 12.5 100 139-258 77-176 (212)
98 TIGR00446 nop2p NOL1/NOP2/sun 99.0 9.9E-09 2.1E-13 96.6 14.0 133 139-296 70-221 (264)
99 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2.5E-09 5.5E-14 113.5 10.8 114 140-259 538-658 (702)
100 PRK10901 16S rRNA methyltransf 99.0 1.5E-08 3.3E-13 101.7 15.7 116 139-262 243-377 (427)
101 PRK14904 16S rRNA methyltransf 99.0 1.3E-08 2.7E-13 102.8 15.0 115 139-262 249-382 (445)
102 TIGR01177 conserved hypothetic 99.0 8.8E-09 1.9E-13 99.9 13.3 122 130-261 172-298 (329)
103 PRK11705 cyclopropane fatty ac 99.0 8.2E-09 1.8E-13 102.2 13.1 105 139-261 166-271 (383)
104 PHA03411 putative methyltransf 98.9 8.7E-09 1.9E-13 96.9 12.0 108 140-261 64-187 (279)
105 PRK11088 rrmA 23S rRNA methylt 98.9 4.5E-09 9.8E-14 99.2 10.0 97 140-260 85-184 (272)
106 COG2890 HemK Methylase of poly 98.9 3.1E-08 6.7E-13 94.1 15.6 106 143-261 113-242 (280)
107 TIGR00563 rsmB ribosomal RNA s 98.9 1.8E-08 3.9E-13 101.1 14.8 118 139-262 237-373 (426)
108 PRK12335 tellurite resistance 98.9 7.5E-09 1.6E-13 98.5 11.2 105 139-257 119-223 (287)
109 PRK06922 hypothetical protein; 98.9 5.6E-09 1.2E-13 108.1 10.7 111 140-258 418-538 (677)
110 PF01135 PCMT: Protein-L-isoas 98.9 2.8E-09 6E-14 97.1 7.3 104 138-259 70-174 (209)
111 TIGR03840 TMPT_Se_Te thiopurin 98.9 1.2E-08 2.5E-13 93.3 11.4 115 140-258 34-153 (213)
112 PF05401 NodS: Nodulation prot 98.9 9.5E-09 2.1E-13 91.8 10.4 148 141-314 44-193 (201)
113 COG2264 PrmA Ribosomal protein 98.9 1.1E-08 2.4E-13 97.3 11.2 121 139-294 161-282 (300)
114 TIGR03587 Pse_Me-ase pseudamin 98.9 2E-08 4.3E-13 91.1 12.3 105 138-259 41-145 (204)
115 KOG1540 Ubiquinone biosynthesi 98.9 2.3E-08 4.9E-13 92.2 12.5 107 140-255 100-212 (296)
116 PRK13943 protein-L-isoaspartat 98.9 2.1E-08 4.5E-13 97.0 12.9 102 139-258 79-181 (322)
117 KOG1270 Methyltransferases [Co 98.9 4.4E-09 9.4E-14 97.3 7.7 110 141-262 90-200 (282)
118 PRK14901 16S rRNA methyltransf 98.9 3.8E-08 8.2E-13 99.1 15.1 117 139-262 251-389 (434)
119 PTZ00146 fibrillarin; Provisio 98.9 8E-08 1.7E-12 91.3 16.3 139 139-303 131-273 (293)
120 smart00650 rADc Ribosomal RNA 98.9 4E-08 8.7E-13 86.1 12.7 103 139-260 12-116 (169)
121 PRK05134 bifunctional 3-demeth 98.8 2.8E-08 6.1E-13 91.2 11.8 106 140-259 48-153 (233)
122 TIGR03438 probable methyltrans 98.8 2E-08 4.3E-13 96.3 11.1 143 140-295 63-214 (301)
123 KOG4300 Predicted methyltransf 98.8 1.4E-08 3.1E-13 90.9 9.2 110 141-262 77-187 (252)
124 PRK06202 hypothetical protein; 98.8 5.6E-08 1.2E-12 89.4 12.7 108 139-261 59-170 (232)
125 PLN02672 methionine S-methyltr 98.8 5.1E-08 1.1E-12 106.6 14.3 121 141-261 119-282 (1082)
126 PHA03412 putative methyltransf 98.8 3.4E-08 7.5E-13 91.0 11.0 99 140-252 49-158 (241)
127 PF02390 Methyltransf_4: Putat 98.8 1.5E-08 3.2E-13 91.4 7.9 124 143-292 20-149 (195)
128 TIGR00452 methyltransferase, p 98.8 5.9E-08 1.3E-12 93.6 12.4 103 139-258 120-226 (314)
129 PRK15068 tRNA mo(5)U34 methylt 98.8 4E-08 8.7E-13 95.2 11.2 102 140-258 122-227 (322)
130 PF06325 PrmA: Ribosomal prote 98.8 1.8E-08 4E-13 96.2 8.3 101 139-258 160-260 (295)
131 PRK05785 hypothetical protein; 98.8 1.2E-07 2.6E-12 87.3 13.4 90 140-250 51-140 (226)
132 TIGR01983 UbiG ubiquinone bios 98.8 5.2E-08 1.1E-12 88.6 10.8 108 140-260 45-152 (224)
133 PF03848 TehB: Tellurite resis 98.8 3.8E-08 8.2E-13 88.3 9.6 106 139-258 29-134 (192)
134 PRK13255 thiopurine S-methyltr 98.8 4.8E-08 1E-12 89.5 10.4 112 140-255 37-153 (218)
135 smart00138 MeTrc Methyltransfe 98.8 3.4E-08 7.5E-13 93.0 9.5 113 140-256 99-241 (264)
136 TIGR00095 RNA methyltransferas 98.7 6.6E-08 1.4E-12 86.7 10.5 109 139-259 48-161 (189)
137 PRK03522 rumB 23S rRNA methylu 98.7 1.3E-07 2.7E-12 91.3 12.9 106 140-261 173-278 (315)
138 COG1092 Predicted SAM-dependen 98.7 6.2E-08 1.3E-12 95.7 10.8 116 140-261 217-340 (393)
139 TIGR02021 BchM-ChlM magnesium 98.7 8E-08 1.7E-12 87.6 10.4 102 139-255 54-156 (219)
140 PLN02336 phosphoethanolamine N 98.7 6E-08 1.3E-12 98.5 10.5 104 140-256 37-141 (475)
141 PF13489 Methyltransf_23: Meth 98.7 8.9E-08 1.9E-12 81.8 9.5 100 138-261 20-119 (161)
142 COG0220 Predicted S-adenosylme 98.7 9E-08 2E-12 88.1 10.0 109 142-257 50-164 (227)
143 PF00891 Methyltransf_2: O-met 98.7 8.8E-08 1.9E-12 88.5 9.6 99 139-257 99-199 (241)
144 TIGR00479 rumA 23S rRNA (uraci 98.7 2E-07 4.3E-12 93.7 12.9 104 139-258 291-397 (431)
145 PRK13168 rumA 23S rRNA m(5)U19 98.7 1.8E-07 4E-12 94.3 12.2 104 139-259 296-402 (443)
146 KOG2899 Predicted methyltransf 98.7 9.2E-08 2E-12 87.6 8.8 115 139-256 57-208 (288)
147 TIGR02085 meth_trns_rumB 23S r 98.7 2.8E-07 6.1E-12 91.0 13.1 103 140-258 233-335 (374)
148 KOG1663 O-methyltransferase [S 98.7 1.1E-07 2.3E-12 86.7 9.0 110 134-256 67-182 (237)
149 PRK04338 N(2),N(2)-dimethylgua 98.6 1.2E-07 2.6E-12 93.9 9.7 99 142-256 59-157 (382)
150 COG3963 Phospholipid N-methylt 98.6 2.3E-07 5E-12 80.6 9.9 120 127-260 34-159 (194)
151 PRK07580 Mg-protoporphyrin IX 98.6 2.6E-07 5.6E-12 84.3 9.9 101 139-253 62-162 (230)
152 PF07021 MetW: Methionine bios 98.5 2.2E-07 4.9E-12 82.8 7.7 99 139-259 12-111 (193)
153 COG2263 Predicted RNA methylas 98.5 7.9E-07 1.7E-11 78.9 10.8 93 140-247 45-137 (198)
154 PF03602 Cons_hypoth95: Conser 98.5 1.5E-07 3.2E-12 84.1 6.4 112 139-261 41-157 (183)
155 PLN02585 magnesium protoporphy 98.5 8.4E-07 1.8E-11 85.7 11.9 103 140-254 144-247 (315)
156 PF02475 Met_10: Met-10+ like- 98.5 1.9E-07 4.1E-12 84.5 6.2 101 138-254 99-199 (200)
157 PTZ00338 dimethyladenosine tra 98.5 1.2E-06 2.5E-11 83.9 11.7 102 138-256 34-136 (294)
158 KOG2904 Predicted methyltransf 98.5 2E-06 4.3E-11 80.2 12.7 117 140-262 148-290 (328)
159 COG4976 Predicted methyltransf 98.5 2.4E-08 5.1E-13 90.8 0.0 103 141-262 126-230 (287)
160 PF05185 PRMT5: PRMT5 arginine 98.5 4.1E-07 9E-12 91.7 8.4 104 141-254 187-294 (448)
161 PRK11933 yebU rRNA (cytosine-C 98.5 2.6E-06 5.7E-11 86.4 14.1 117 139-262 112-247 (470)
162 TIGR00308 TRM1 tRNA(guanine-26 98.5 6.5E-07 1.4E-11 88.4 9.3 101 142-257 46-147 (374)
163 KOG1661 Protein-L-isoaspartate 98.5 7.4E-07 1.6E-11 80.1 8.6 120 128-258 69-194 (237)
164 PRK13256 thiopurine S-methyltr 98.4 1.9E-06 4.2E-11 79.3 11.5 118 140-261 43-167 (226)
165 TIGR02143 trmA_only tRNA (urac 98.4 1.1E-06 2.4E-11 86.1 10.6 101 141-259 198-313 (353)
166 PRK11727 23S rRNA mA1618 methy 98.4 6.9E-06 1.5E-10 79.4 15.7 180 140-325 114-318 (321)
167 PF10672 Methyltrans_SAM: S-ad 98.4 8.4E-07 1.8E-11 84.4 9.0 117 139-261 122-242 (286)
168 PRK05031 tRNA (uracil-5-)-meth 98.4 1.2E-06 2.6E-11 86.2 10.4 100 142-259 208-322 (362)
169 KOG1541 Predicted protein carb 98.4 3.8E-06 8.3E-11 76.2 12.4 127 141-298 51-185 (270)
170 PF05724 TPMT: Thiopurine S-me 98.4 8E-07 1.7E-11 81.5 8.1 111 139-253 36-151 (218)
171 PF05891 Methyltransf_PK: AdoM 98.4 7E-07 1.5E-11 81.1 7.6 108 140-261 55-167 (218)
172 PRK14896 ksgA 16S ribosomal RN 98.4 4.2E-06 9E-11 78.6 12.7 81 130-224 19-99 (258)
173 PRK00274 ksgA 16S ribosomal RN 98.4 3.2E-06 6.9E-11 80.0 11.7 72 139-223 41-112 (272)
174 COG0742 N6-adenine-specific me 98.4 2.2E-06 4.9E-11 76.3 9.5 112 139-261 42-158 (187)
175 KOG3010 Methyltransferase [Gen 98.3 1E-06 2.2E-11 80.9 6.8 105 142-261 35-141 (261)
176 COG0030 KsgA Dimethyladenosine 98.3 7.4E-06 1.6E-10 76.7 12.6 98 139-255 29-129 (259)
177 KOG1271 Methyltransferases [Ge 98.3 2E-06 4.4E-11 75.8 7.7 111 142-261 69-185 (227)
178 TIGR00755 ksgA dimethyladenosi 98.3 7.3E-06 1.6E-10 76.6 12.0 86 139-245 28-116 (253)
179 KOG3191 Predicted N6-DNA-methy 98.3 2.4E-05 5.3E-10 69.0 14.1 129 141-301 44-194 (209)
180 TIGR02081 metW methionine bios 98.3 4.3E-06 9.3E-11 74.8 8.8 92 139-249 12-104 (194)
181 PF10294 Methyltransf_16: Puta 98.2 6.4E-06 1.4E-10 72.7 8.8 113 138-260 43-159 (173)
182 PF08003 Methyltransf_9: Prote 98.2 2.6E-05 5.7E-10 74.3 12.6 106 140-262 115-224 (315)
183 PF13578 Methyltransf_24: Meth 98.2 9.4E-07 2E-11 71.1 2.2 97 145-256 1-104 (106)
184 PRK01747 mnmC bifunctional tRN 98.1 5.7E-06 1.2E-10 87.5 8.5 115 141-256 58-205 (662)
185 PF03059 NAS: Nicotianamine sy 98.1 1.3E-05 2.7E-10 75.9 9.5 150 140-319 120-274 (276)
186 PRK01544 bifunctional N5-gluta 98.1 1.2E-05 2.6E-10 82.6 10.1 109 140-255 347-460 (506)
187 KOG1709 Guanidinoacetate methy 98.1 1.8E-05 3.9E-10 71.6 9.5 110 139-261 100-211 (271)
188 PRK00050 16S rRNA m(4)C1402 me 98.1 1E-05 2.2E-10 77.4 8.2 77 139-224 18-98 (296)
189 PLN02232 ubiquinone biosynthes 98.1 3.2E-05 6.9E-10 67.3 10.5 85 168-261 1-85 (160)
190 PF03291 Pox_MCEL: mRNA cappin 98.1 9.3E-06 2E-10 79.0 7.3 120 140-261 62-190 (331)
191 PF01269 Fibrillarin: Fibrilla 98.0 5.9E-05 1.3E-09 68.9 11.8 135 139-303 72-214 (229)
192 PF02527 GidB: rRNA small subu 98.0 5.8E-05 1.3E-09 67.5 11.0 115 124-258 31-149 (184)
193 PF01170 UPF0020: Putative RNA 98.0 3.3E-05 7.2E-10 68.6 9.4 118 130-254 18-148 (179)
194 COG4076 Predicted RNA methylas 98.0 1.6E-05 3.4E-10 70.6 6.1 100 141-254 33-132 (252)
195 KOG0820 Ribosomal RNA adenine 97.9 8E-05 1.7E-09 69.7 10.5 76 138-224 56-131 (315)
196 PF01728 FtsJ: FtsJ-like methy 97.9 4E-06 8.6E-11 74.1 1.5 126 140-303 23-165 (181)
197 PF05219 DREV: DREV methyltran 97.9 7.8E-05 1.7E-09 69.6 9.9 94 140-257 94-188 (265)
198 PF09445 Methyltransf_15: RNA 97.9 1.6E-05 3.5E-10 69.6 5.0 75 143-225 2-78 (163)
199 COG2520 Predicted methyltransf 97.9 0.00026 5.5E-09 68.9 13.7 108 139-262 187-294 (341)
200 KOG2915 tRNA(1-methyladenosine 97.9 0.00026 5.7E-09 66.2 12.5 122 139-294 104-229 (314)
201 KOG2361 Predicted methyltransf 97.8 3E-05 6.4E-10 71.4 5.9 106 141-256 72-182 (264)
202 PF05430 Methyltransf_30: S-ad 97.8 1.4E-05 3E-10 66.9 2.9 59 196-255 30-88 (124)
203 PF02384 N6_Mtase: N-6 DNA Met 97.8 5.4E-05 1.2E-09 72.6 7.2 116 139-259 45-185 (311)
204 COG1041 Predicted DNA modifica 97.8 0.0002 4.3E-09 69.5 10.9 124 125-258 182-311 (347)
205 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00068 1.5E-08 72.4 15.1 110 140-255 190-345 (702)
206 KOG1499 Protein arginine N-met 97.7 0.00015 3.2E-09 70.1 8.8 118 123-254 43-164 (346)
207 COG2265 TrmA SAM-dependent met 97.7 0.00019 4.1E-09 72.3 9.9 104 140-259 293-398 (432)
208 COG0357 GidB Predicted S-adeno 97.7 0.00052 1.1E-08 62.7 11.3 118 125-261 51-172 (215)
209 COG0144 Sun tRNA and rRNA cyto 97.6 0.0014 3.1E-08 64.4 14.7 117 139-262 155-293 (355)
210 KOG1500 Protein arginine N-met 97.6 0.00042 9.1E-09 66.6 10.1 104 140-258 177-283 (517)
211 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00014 3.1E-09 68.3 6.8 88 140-245 30-119 (262)
212 PRK10611 chemotaxis methyltran 97.6 0.00019 4E-09 68.5 7.6 112 141-255 116-260 (287)
213 PRK04148 hypothetical protein; 97.6 0.00027 5.9E-09 59.8 7.6 67 140-222 16-83 (134)
214 TIGR02987 met_A_Alw26 type II 97.5 0.00033 7.2E-09 72.3 9.1 78 140-224 31-120 (524)
215 KOG3178 Hydroxyindole-O-methyl 97.5 0.00033 7.1E-09 67.8 8.2 93 141-255 178-273 (342)
216 KOG1975 mRNA cap methyltransfe 97.5 0.00026 5.7E-09 67.7 7.2 119 139-261 116-241 (389)
217 PF06080 DUF938: Protein of un 97.5 0.00055 1.2E-08 62.0 8.6 110 139-256 23-140 (204)
218 TIGR00478 tly hemolysin TlyA f 97.5 0.00087 1.9E-08 61.9 10.0 95 140-257 75-171 (228)
219 PF12147 Methyltransf_20: Puta 97.5 0.002 4.3E-08 61.2 12.3 111 139-257 134-249 (311)
220 KOG3420 Predicted RNA methylas 97.3 0.00053 1.2E-08 58.6 6.3 98 139-248 47-144 (185)
221 COG0293 FtsJ 23S rRNA methylas 97.3 0.003 6.6E-08 57.2 11.5 126 139-302 44-184 (205)
222 PF01739 CheR: CheR methyltran 97.3 0.00047 1E-08 62.2 6.3 113 140-255 31-173 (196)
223 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.3 0.00034 7.4E-09 66.7 5.6 116 140-262 85-224 (283)
224 KOG4589 Cell division protein 97.2 0.0043 9.4E-08 55.3 11.2 122 139-298 68-205 (232)
225 COG0500 SmtA SAM-dependent met 97.2 0.007 1.5E-07 48.3 11.9 106 144-262 52-160 (257)
226 COG1889 NOP1 Fibrillarin-like 97.2 0.013 2.9E-07 52.8 14.4 128 139-293 75-206 (231)
227 PRK10742 putative methyltransf 97.2 0.0015 3.3E-08 60.8 8.3 82 143-226 91-174 (250)
228 PF05958 tRNA_U5-meth_tr: tRNA 97.2 0.0015 3.2E-08 64.2 8.5 89 142-245 198-301 (352)
229 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0011 2.3E-08 65.8 7.0 105 141-258 50-155 (377)
230 COG1352 CheR Methylase of chem 97.1 0.0034 7.3E-08 59.4 10.0 111 141-255 97-239 (268)
231 PF09243 Rsm22: Mitochondrial 97.1 0.002 4.4E-08 61.0 8.5 46 140-185 33-79 (274)
232 PRK11760 putative 23S rRNA C24 97.1 0.0035 7.6E-08 61.0 10.1 99 139-262 210-310 (357)
233 COG0116 Predicted N6-adenine-s 97.1 0.012 2.6E-07 58.0 13.7 110 139-256 190-343 (381)
234 TIGR01444 fkbM_fam methyltrans 97.0 0.0019 4.1E-08 54.3 6.5 57 143-206 1-57 (143)
235 KOG0822 Protein kinase inhibit 97.0 0.0015 3.2E-08 66.3 6.3 103 142-254 369-475 (649)
236 PF04672 Methyltransf_19: S-ad 96.9 0.0057 1.2E-07 57.6 9.7 113 141-262 69-195 (267)
237 COG1867 TRM1 N2,N2-dimethylgua 96.9 0.0036 7.8E-08 61.1 8.5 106 141-261 53-158 (380)
238 PF01861 DUF43: Protein of unk 96.8 0.015 3.2E-07 54.0 10.8 107 140-261 44-153 (243)
239 TIGR00006 S-adenosyl-methyltra 96.8 0.006 1.3E-07 58.7 8.5 78 139-224 19-100 (305)
240 KOG2940 Predicted methyltransf 96.8 0.0033 7.2E-08 57.7 6.2 107 141-262 73-179 (325)
241 PF07942 N2227: N2227-like pro 96.6 0.016 3.4E-07 54.9 10.2 116 140-262 56-206 (270)
242 TIGR03439 methyl_EasF probable 96.6 0.019 4.1E-07 55.7 11.1 112 140-259 76-199 (319)
243 COG4121 Uncharacterized conser 96.4 0.0042 9.2E-08 58.0 5.0 113 141-254 59-205 (252)
244 KOG1596 Fibrillarin and relate 96.4 0.025 5.4E-07 52.4 9.7 105 139-262 155-266 (317)
245 PF08123 DOT1: Histone methyla 96.4 0.014 3E-07 53.1 8.1 104 138-254 40-155 (205)
246 PF05971 Methyltransf_10: Prot 96.4 0.016 3.4E-07 55.6 8.7 76 141-223 103-184 (299)
247 PF06962 rRNA_methylase: Putat 96.4 0.029 6.4E-07 47.9 9.4 91 166-262 1-97 (140)
248 COG3897 Predicted methyltransf 96.4 0.0099 2.1E-07 53.4 6.5 102 135-255 74-176 (218)
249 PTZ00357 methyltransferase; Pr 96.3 0.014 3E-07 61.2 8.3 108 143-252 703-830 (1072)
250 COG2384 Predicted SAM-dependen 96.2 0.02 4.2E-07 52.4 7.6 102 140-254 16-117 (226)
251 KOG2730 Methylase [General fun 96.2 0.0091 2E-07 54.5 5.3 76 140-223 94-172 (263)
252 COG0275 Predicted S-adenosylme 96.1 0.025 5.4E-07 54.0 8.5 78 139-224 22-104 (314)
253 COG0287 TyrA Prephenate dehydr 96.1 0.042 9.1E-07 52.3 9.9 110 141-295 3-114 (279)
254 PF01795 Methyltransf_5: MraW 96.0 0.021 4.6E-07 55.0 7.6 78 139-224 19-101 (310)
255 PF04816 DUF633: Family of unk 96.0 0.021 4.6E-07 51.9 7.0 102 144-258 1-102 (205)
256 PF13679 Methyltransf_32: Meth 96.0 0.014 3E-07 49.6 5.5 47 139-185 24-74 (141)
257 KOG1253 tRNA methyltransferase 96.0 0.0075 1.6E-07 60.8 4.3 106 140-259 109-218 (525)
258 PF07091 FmrO: Ribosomal RNA m 96.0 0.013 2.9E-07 54.6 5.6 74 139-222 104-177 (251)
259 COG1063 Tdh Threonine dehydrog 95.9 0.028 6.1E-07 55.0 8.2 99 141-258 169-270 (350)
260 PF04989 CmcI: Cephalosporin h 95.8 0.043 9.2E-07 49.9 8.0 103 139-255 31-145 (206)
261 KOG1122 tRNA and rRNA cytosine 95.6 0.14 3.1E-06 51.0 11.3 134 140-298 241-394 (460)
262 KOG2187 tRNA uracil-5-methyltr 95.6 0.14 3.1E-06 52.2 11.5 105 139-258 382-491 (534)
263 KOG2198 tRNA cytosine-5-methyl 95.4 0.33 7.2E-06 47.6 13.2 125 131-262 142-301 (375)
264 PRK09424 pntA NAD(P) transhydr 95.3 0.13 2.9E-06 52.9 10.4 111 139-255 163-283 (509)
265 COG1064 AdhP Zn-dependent alco 95.1 0.12 2.6E-06 50.5 9.2 93 140-257 166-259 (339)
266 KOG3115 Methyltransferase-like 95.1 0.044 9.6E-07 49.6 5.6 114 142-255 62-181 (249)
267 PF04445 SAM_MT: Putative SAM- 95.1 0.043 9.3E-07 50.8 5.6 79 142-224 77-159 (234)
268 KOG0024 Sorbitol dehydrogenase 94.9 0.11 2.5E-06 50.1 8.1 107 140-262 169-278 (354)
269 PF05148 Methyltransf_8: Hypot 94.7 0.14 3E-06 46.7 7.8 85 141-256 73-157 (219)
270 cd00315 Cyt_C5_DNA_methylase C 94.7 0.47 1E-05 44.9 11.7 122 143-292 2-134 (275)
271 COG1189 Predicted rRNA methyla 94.5 0.38 8.2E-06 44.6 10.1 100 138-257 77-178 (245)
272 KOG2352 Predicted spermine/spe 94.5 0.24 5.1E-06 50.3 9.5 103 143-256 51-160 (482)
273 PRK07417 arogenate dehydrogena 94.4 0.57 1.2E-05 44.3 11.7 91 143-261 2-94 (279)
274 PRK09880 L-idonate 5-dehydroge 94.3 0.24 5.2E-06 47.9 9.2 96 140-256 169-265 (343)
275 COG5459 Predicted rRNA methyla 94.3 0.037 7.9E-07 53.9 3.3 115 140-261 113-229 (484)
276 PRK11524 putative methyltransf 94.3 0.074 1.6E-06 50.6 5.4 63 196-258 6-81 (284)
277 PF06460 NSP13: Coronavirus NS 94.2 0.14 3E-06 48.0 6.6 101 139-260 60-172 (299)
278 COG0286 HsdM Type I restrictio 94.1 0.43 9.3E-06 49.1 10.8 114 140-259 186-328 (489)
279 COG0686 Ald Alanine dehydrogen 94.0 0.27 5.8E-06 47.4 8.2 98 140-254 167-265 (371)
280 TIGR00518 alaDH alanine dehydr 93.6 0.39 8.4E-06 47.6 9.1 104 140-261 166-270 (370)
281 PRK07502 cyclohexadienyl dehyd 93.3 1 2.2E-05 43.1 11.2 92 142-258 7-100 (307)
282 KOG0821 Predicted ribosomal RN 92.9 0.1 2.2E-06 47.9 3.4 61 140-209 50-110 (326)
283 PRK09260 3-hydroxybutyryl-CoA 92.9 0.12 2.6E-06 49.1 4.1 108 142-262 2-122 (288)
284 PRK06545 prephenate dehydrogen 92.8 1.9 4.2E-05 42.3 12.7 95 142-261 1-98 (359)
285 KOG3045 Predicted RNA methylas 92.8 0.32 7E-06 45.7 6.6 83 142-257 182-264 (325)
286 KOG3201 Uncharacterized conser 92.8 0.13 2.8E-06 45.1 3.7 106 140-256 29-139 (201)
287 cd08283 FDH_like_1 Glutathione 92.8 0.55 1.2E-05 46.3 8.8 107 139-256 183-305 (386)
288 TIGR01202 bchC 2-desacetyl-2-h 92.8 0.74 1.6E-05 43.9 9.4 85 140-255 144-229 (308)
289 TIGR00561 pntA NAD(P) transhyd 92.7 0.72 1.6E-05 47.6 9.7 109 140-254 163-281 (511)
290 PRK11064 wecC UDP-N-acetyl-D-m 92.5 0.92 2E-05 45.6 10.1 111 142-262 4-123 (415)
291 PF10354 DUF2431: Domain of un 92.5 0.24 5.2E-06 43.5 5.2 116 145-262 1-130 (166)
292 PF02254 TrkA_N: TrkA-N domain 92.4 1.5 3.3E-05 35.1 9.6 93 144-259 1-98 (116)
293 PRK05808 3-hydroxybutyryl-CoA 92.4 0.52 1.1E-05 44.5 7.8 106 142-261 4-122 (282)
294 cd08237 ribitol-5-phosphate_DH 92.0 0.89 1.9E-05 43.9 9.1 90 140-255 163-254 (341)
295 PF04378 RsmJ: Ribosomal RNA s 91.9 0.85 1.8E-05 42.6 8.3 120 147-298 64-188 (245)
296 COG2961 ComJ Protein involved 91.9 3.4 7.4E-05 38.7 12.0 125 145-300 93-221 (279)
297 PF11599 AviRa: RRNA methyltra 91.8 0.89 1.9E-05 41.7 8.0 127 128-255 40-212 (246)
298 PF01262 AlaDh_PNT_C: Alanine 91.8 0.17 3.7E-06 44.1 3.4 113 139-260 18-141 (168)
299 PRK13699 putative methylase; P 91.6 0.23 4.9E-06 45.8 4.2 60 199-258 2-73 (227)
300 PF03721 UDPG_MGDP_dh_N: UDP-g 91.3 0.13 2.8E-06 45.9 2.1 113 142-261 1-124 (185)
301 PF03141 Methyltransf_29: Puta 91.3 0.11 2.4E-06 52.8 1.9 153 82-257 56-219 (506)
302 PF02153 PDH: Prephenate dehyd 91.2 2.4 5.2E-05 39.6 10.8 119 154-319 1-135 (258)
303 KOG1099 SAM-dependent methyltr 91.1 1.1 2.5E-05 41.4 8.1 124 140-301 41-187 (294)
304 PF07279 DUF1442: Protein of u 91.1 2.2 4.7E-05 39.1 9.8 105 140-259 41-152 (218)
305 KOG3987 Uncharacterized conser 91.1 0.063 1.4E-06 48.8 -0.1 98 136-257 107-207 (288)
306 cd05188 MDR Medium chain reduc 91.0 1.8 3.9E-05 39.2 9.5 98 139-257 133-232 (271)
307 PF00107 ADH_zinc_N: Zinc-bind 91.0 1.3 2.7E-05 36.1 7.8 86 150-259 1-91 (130)
308 PRK06035 3-hydroxyacyl-CoA deh 90.8 1.5 3.2E-05 41.6 9.1 104 142-259 4-123 (291)
309 PRK10309 galactitol-1-phosphat 90.5 1.4 3E-05 42.5 8.7 98 139-255 159-258 (347)
310 PHA01634 hypothetical protein 90.4 0.61 1.3E-05 39.3 5.2 90 125-226 11-102 (156)
311 PRK06130 3-hydroxybutyryl-CoA 90.4 1.4 2.9E-05 42.2 8.5 105 142-259 5-117 (311)
312 cd08281 liver_ADH_like1 Zinc-d 90.4 0.97 2.1E-05 44.2 7.6 97 139-255 190-288 (371)
313 PRK05562 precorrin-2 dehydroge 90.3 1.7 3.6E-05 40.1 8.5 103 128-259 10-118 (223)
314 PRK03562 glutathione-regulated 90.3 2.1 4.5E-05 45.4 10.4 70 141-226 400-474 (621)
315 PRK08818 prephenate dehydrogen 90.2 2.1 4.6E-05 42.4 9.8 83 141-262 4-92 (370)
316 PF03446 NAD_binding_2: NAD bi 90.2 2.2 4.9E-05 36.8 8.9 93 142-262 2-98 (163)
317 PRK05708 2-dehydropantoate 2-r 90.1 1.4 3.1E-05 42.2 8.4 98 142-255 3-102 (305)
318 COG4017 Uncharacterized protei 90.1 0.87 1.9E-05 41.0 6.2 84 139-254 43-127 (254)
319 KOG1331 Predicted methyltransf 89.9 0.25 5.5E-06 46.9 2.9 104 141-263 46-149 (293)
320 TIGR03451 mycoS_dep_FDH mycoth 89.6 1.6 3.4E-05 42.4 8.3 97 139-255 175-274 (358)
321 PF11312 DUF3115: Protein of u 89.4 1 2.2E-05 43.4 6.6 110 142-255 88-240 (315)
322 cd08230 glucose_DH Glucose deh 89.3 2.1 4.5E-05 41.5 8.9 92 140-255 172-267 (355)
323 PRK06249 2-dehydropantoate 2-r 89.1 1.9 4E-05 41.4 8.3 97 141-254 5-103 (313)
324 KOG1269 SAM-dependent methyltr 89.0 0.69 1.5E-05 45.7 5.3 106 140-258 110-216 (364)
325 cd08293 PTGR2 Prostaglandin re 88.9 1.9 4E-05 41.3 8.3 94 142-255 156-252 (345)
326 PLN02353 probable UDP-glucose 88.9 2.7 6E-05 43.0 9.8 107 142-255 2-125 (473)
327 cd08239 THR_DH_like L-threonin 88.8 1.9 4.2E-05 41.2 8.3 95 139-255 162-260 (339)
328 PRK06719 precorrin-2 dehydroge 88.8 2.5 5.5E-05 36.6 8.2 70 134-223 4-77 (157)
329 TIGR03366 HpnZ_proposed putati 88.7 2 4.2E-05 40.3 8.0 95 140-256 120-217 (280)
330 PRK00094 gpsA NAD(P)H-dependen 88.7 6.3 0.00014 37.5 11.7 98 143-254 3-102 (325)
331 PRK08507 prephenate dehydrogen 88.6 2.1 4.6E-05 40.2 8.2 89 143-259 2-92 (275)
332 TIGR00872 gnd_rel 6-phosphoglu 88.5 4.6 0.0001 38.5 10.5 94 143-262 2-97 (298)
333 PRK07066 3-hydroxybutyryl-CoA 88.4 1.6 3.4E-05 42.5 7.3 106 141-260 7-122 (321)
334 PRK03659 glutathione-regulated 88.4 3.1 6.7E-05 43.9 10.0 96 142-260 401-501 (601)
335 PF11968 DUF3321: Putative met 88.1 0.4 8.6E-06 43.9 2.8 95 141-261 52-153 (219)
336 PF02636 Methyltransf_28: Puta 88.1 0.41 8.9E-06 44.6 3.0 46 141-186 19-72 (252)
337 cd08254 hydroxyacyl_CoA_DH 6-h 88.1 3.4 7.5E-05 39.0 9.4 97 139-256 164-262 (338)
338 PLN02545 3-hydroxybutyryl-CoA 88.1 2 4.3E-05 40.8 7.7 108 141-261 4-123 (295)
339 COG0569 TrkA K+ transport syst 87.7 2 4.4E-05 39.4 7.3 71 142-226 1-76 (225)
340 cd08294 leukotriene_B4_DH_like 87.6 3.2 6.8E-05 39.2 8.8 95 139-255 142-239 (329)
341 PRK10669 putative cation:proto 87.5 3.4 7.4E-05 43.0 9.6 93 142-257 418-515 (558)
342 PF01210 NAD_Gly3P_dh_N: NAD-d 87.4 2.8 6.1E-05 36.0 7.6 104 143-259 1-104 (157)
343 PF02737 3HCDH_N: 3-hydroxyacy 87.1 2 4.3E-05 38.0 6.6 105 143-261 1-118 (180)
344 cd05298 GH4_GlvA_pagL_like Gly 86.8 2.6 5.6E-05 42.8 8.0 42 143-185 2-54 (437)
345 PRK07819 3-hydroxybutyryl-CoA 86.8 1.8 3.9E-05 41.2 6.6 108 142-262 6-126 (286)
346 TIGR02825 B4_12hDH leukotriene 86.8 7.4 0.00016 36.9 10.9 95 139-255 137-235 (325)
347 PRK06522 2-dehydropantoate 2-r 86.6 6.9 0.00015 36.8 10.5 95 143-255 2-98 (304)
348 PLN02256 arogenate dehydrogena 86.5 8.5 0.00018 37.0 11.1 91 140-259 35-128 (304)
349 KOG2798 Putative trehalase [Ca 86.4 2.5 5.4E-05 40.9 7.1 114 140-260 150-298 (369)
350 PRK08655 prephenate dehydrogen 86.3 14 0.0003 37.4 13.0 88 143-259 2-93 (437)
351 PLN03154 putative allyl alcoho 86.2 4.2 9.2E-05 39.4 9.0 96 139-255 157-256 (348)
352 PRK07530 3-hydroxybutyryl-CoA 85.9 4.9 0.00011 38.0 9.0 107 141-261 4-123 (292)
353 cd08285 NADP_ADH NADP(H)-depen 85.8 3.9 8.5E-05 39.3 8.5 97 139-255 165-264 (351)
354 PRK12490 6-phosphogluconate de 85.7 8.8 0.00019 36.6 10.7 95 143-262 2-98 (299)
355 PRK09496 trkA potassium transp 85.6 3 6.4E-05 41.8 7.8 71 140-224 230-305 (453)
356 TIGR03201 dearomat_had 6-hydro 85.5 3.7 7.9E-05 39.7 8.2 97 139-255 165-270 (349)
357 KOG1501 Arginine N-methyltrans 85.5 1.8 3.8E-05 43.7 5.8 101 143-252 69-169 (636)
358 cd05292 LDH_2 A subgroup of L- 85.4 8.1 0.00018 37.1 10.4 103 143-256 2-115 (308)
359 PRK12921 2-dehydropantoate 2-r 85.4 5.4 0.00012 37.6 9.1 96 143-254 2-99 (305)
360 cd08286 FDH_like_ADH2 formalde 85.4 7.5 0.00016 37.1 10.2 97 139-255 165-264 (345)
361 PRK08306 dipicolinate synthase 85.3 3.7 8E-05 39.3 7.9 93 140-262 151-245 (296)
362 PRK06129 3-hydroxyacyl-CoA deh 85.3 5.4 0.00012 38.2 9.1 39 142-182 3-43 (308)
363 TIGR02822 adh_fam_2 zinc-bindi 85.2 6.5 0.00014 37.7 9.7 88 139-255 164-252 (329)
364 PRK09599 6-phosphogluconate de 85.1 11 0.00025 35.8 11.2 95 143-262 2-98 (301)
365 PRK08268 3-hydroxy-acyl-CoA de 84.9 3 6.5E-05 43.1 7.6 109 141-262 7-127 (507)
366 PRK08293 3-hydroxybutyryl-CoA 84.9 1.4 3.1E-05 41.7 4.8 106 142-260 4-123 (287)
367 PTZ00142 6-phosphogluconate de 84.8 7.9 0.00017 39.7 10.4 101 143-262 3-105 (470)
368 PLN02712 arogenate dehydrogena 84.7 9.2 0.0002 40.9 11.3 92 140-260 51-145 (667)
369 COG0604 Qor NADPH:quinone redu 84.6 5.7 0.00012 38.5 9.0 98 139-258 141-242 (326)
370 PRK10637 cysG siroheme synthas 84.6 4.6 0.0001 41.1 8.7 72 134-224 3-80 (457)
371 TIGR02356 adenyl_thiF thiazole 84.2 3.4 7.4E-05 37.2 6.8 33 140-173 20-54 (202)
372 cd05278 FDH_like Formaldehyde 84.1 4.7 0.0001 38.4 8.1 96 140-255 167-265 (347)
373 COG4301 Uncharacterized conser 84.0 17 0.00036 34.3 11.1 143 139-296 77-231 (321)
374 PRK14806 bifunctional cyclohex 83.9 8.2 0.00018 41.5 10.6 95 142-261 4-100 (735)
375 PF05711 TylF: Macrocin-O-meth 83.8 5.5 0.00012 37.3 8.1 111 139-260 73-215 (248)
376 PLN02740 Alcohol dehydrogenase 83.4 5.3 0.00011 39.2 8.3 97 139-255 197-298 (381)
377 PF02558 ApbA: Ketopantoate re 83.3 4.2 9.1E-05 34.1 6.6 96 144-255 1-99 (151)
378 PF02826 2-Hacid_dh_C: D-isome 83.1 4.9 0.00011 35.2 7.2 108 140-291 35-143 (178)
379 PF01408 GFO_IDH_MocA: Oxidore 83.0 2.9 6.2E-05 33.5 5.3 66 143-224 2-70 (120)
380 PLN02494 adenosylhomocysteinas 82.9 12 0.00025 38.5 10.6 92 139-261 252-344 (477)
381 cd08232 idonate-5-DH L-idonate 82.9 7 0.00015 37.2 8.8 95 140-255 165-260 (339)
382 PF00670 AdoHcyase_NAD: S-aden 82.8 11 0.00023 33.1 8.9 92 139-262 21-114 (162)
383 PRK15057 UDP-glucose 6-dehydro 82.8 5.3 0.00011 39.8 8.0 110 143-262 2-121 (388)
384 COG5379 BtaA S-adenosylmethion 82.7 1.9 4.2E-05 41.3 4.6 41 139-181 62-102 (414)
385 PRK09422 ethanol-active dehydr 82.6 6.1 0.00013 37.5 8.2 97 139-255 161-259 (338)
386 PF03807 F420_oxidored: NADP o 82.4 4.1 8.9E-05 31.4 5.8 87 143-254 1-91 (96)
387 cd08295 double_bond_reductase_ 82.4 9.4 0.0002 36.5 9.5 96 139-255 150-249 (338)
388 cd01065 NAD_bind_Shikimate_DH 82.1 22 0.00049 29.6 10.8 74 139-227 17-92 (155)
389 COG1748 LYS9 Saccharopine dehy 82.1 11 0.00024 37.7 9.9 72 142-224 2-76 (389)
390 COG3129 Predicted SAM-dependen 81.9 9.3 0.0002 35.6 8.5 93 127-224 59-161 (292)
391 PRK11559 garR tartronate semia 81.8 14 0.00031 34.8 10.4 93 142-262 3-100 (296)
392 PLN02827 Alcohol dehydrogenase 81.7 5.6 0.00012 39.1 7.8 97 139-255 192-293 (378)
393 PRK09496 trkA potassium transp 81.7 11 0.00024 37.7 10.0 67 143-224 2-73 (453)
394 PRK12475 thiamine/molybdopteri 81.3 4.9 0.00011 39.3 7.1 34 140-174 23-58 (338)
395 KOG2793 Putative N2,N2-dimethy 81.2 11 0.00025 35.2 9.1 107 140-255 86-197 (248)
396 TIGR00873 gnd 6-phosphoglucona 80.6 18 0.00038 37.1 11.1 100 143-262 1-102 (467)
397 KOG2078 tRNA modification enzy 80.4 1.5 3.1E-05 44.1 3.0 67 139-213 248-315 (495)
398 cd08238 sorbose_phosphate_red 80.3 9.8 0.00021 37.8 9.0 103 140-256 175-287 (410)
399 COG1568 Predicted methyltransf 80.3 2.2 4.8E-05 40.6 4.0 77 140-224 152-229 (354)
400 PRK08229 2-dehydropantoate 2-r 80.3 13 0.00028 35.8 9.7 97 142-254 3-104 (341)
401 PRK08644 thiamine biosynthesis 80.3 5.2 0.00011 36.4 6.5 33 140-173 27-61 (212)
402 PLN02586 probable cinnamyl alc 80.2 9.6 0.00021 37.1 8.8 91 140-255 183-276 (360)
403 PRK05476 S-adenosyl-L-homocyst 80.2 14 0.0003 37.5 9.9 91 140-262 211-303 (425)
404 COG4798 Predicted methyltransf 80.2 8 0.00017 35.1 7.3 111 139-262 47-171 (238)
405 cd05285 sorbitol_DH Sorbitol d 79.8 9.8 0.00021 36.4 8.6 97 139-255 161-263 (343)
406 PRK12491 pyrroline-5-carboxyla 79.8 11 0.00024 35.6 8.8 94 142-261 3-100 (272)
407 PRK14620 NAD(P)H-dependent gly 79.7 18 0.0004 34.7 10.5 96 143-255 2-104 (326)
408 COG1565 Uncharacterized conser 79.7 3.3 7.2E-05 40.8 5.2 46 140-185 77-130 (370)
409 cd00401 AdoHcyase S-adenosyl-L 79.6 9.5 0.00021 38.4 8.6 91 139-261 200-292 (413)
410 PRK15182 Vi polysaccharide bio 79.5 5.3 0.00012 40.3 6.9 111 140-262 5-124 (425)
411 PF01555 N6_N4_Mtase: DNA meth 79.2 3.2 6.9E-05 36.8 4.7 42 139-182 190-231 (231)
412 TIGR01505 tartro_sem_red 2-hyd 79.2 15 0.00033 34.6 9.6 92 143-262 1-97 (291)
413 TIGR02279 PaaC-3OHAcCoADH 3-hy 78.9 7.6 0.00016 40.1 7.9 110 140-262 4-125 (503)
414 cd08233 butanediol_DH_like (2R 78.5 11 0.00023 36.3 8.4 97 139-255 171-270 (351)
415 TIGR03026 NDP-sugDHase nucleot 78.4 23 0.0005 35.3 11.0 110 143-262 2-124 (411)
416 PF06690 DUF1188: Protein of u 78.1 7.4 0.00016 36.2 6.6 61 142-226 43-105 (252)
417 KOG1532 GTPase XAB1, interacts 78.1 2.4 5.1E-05 40.5 3.5 41 139-179 17-62 (366)
418 cd05279 Zn_ADH1 Liver alcohol 78.0 17 0.00037 35.3 9.8 97 139-255 182-283 (365)
419 PF14314 Methyltrans_Mon: Viru 77.8 10 0.00022 40.4 8.5 158 140-317 322-502 (675)
420 cd05197 GH4_glycoside_hydrolas 77.8 10 0.00022 38.3 8.3 109 143-261 2-146 (425)
421 PRK15461 NADH-dependent gamma- 77.6 12 0.00025 35.7 8.3 92 143-262 3-99 (296)
422 PRK10083 putative oxidoreducta 77.4 12 0.00026 35.5 8.4 97 139-255 159-257 (339)
423 TIGR01470 cysG_Nterm siroheme 77.3 18 0.0004 32.6 9.1 92 140-261 8-103 (205)
424 PRK12439 NAD(P)H-dependent gly 77.3 41 0.00088 32.7 12.1 99 140-253 6-107 (341)
425 PRK07531 bifunctional 3-hydrox 77.0 12 0.00026 38.4 8.7 104 142-260 5-119 (495)
426 cd05213 NAD_bind_Glutamyl_tRNA 76.9 22 0.00047 34.2 10.0 96 140-261 177-276 (311)
427 cd01492 Aos1_SUMO Ubiquitin ac 76.8 11 0.00023 33.8 7.4 35 140-174 20-55 (197)
428 cd08277 liver_alcohol_DH_like 76.5 20 0.00043 34.8 9.8 97 139-255 183-284 (365)
429 TIGR02853 spore_dpaA dipicolin 76.4 9.8 0.00021 36.3 7.4 93 140-262 150-244 (287)
430 COG1062 AdhC Zn-dependent alco 76.3 19 0.00041 35.4 9.2 98 140-256 185-284 (366)
431 PLN02712 arogenate dehydrogena 76.3 27 0.00059 37.4 11.4 93 140-261 368-463 (667)
432 cd08261 Zn_ADH7 Alcohol dehydr 76.2 14 0.0003 35.2 8.4 96 139-255 158-256 (337)
433 PF00145 DNA_methylase: C-5 cy 76.0 22 0.00047 33.5 9.7 130 143-302 2-142 (335)
434 TIGR00675 dcm DNA-methyltransf 75.8 6.9 0.00015 37.8 6.2 103 144-261 1-113 (315)
435 PLN02819 lysine-ketoglutarate 75.7 22 0.00048 40.1 10.7 110 140-262 568-707 (1042)
436 PF03269 DUF268: Caenorhabditi 75.6 5.5 0.00012 35.0 4.9 107 141-262 2-116 (177)
437 cd08301 alcohol_DH_plants Plan 75.2 16 0.00035 35.4 8.7 97 139-255 186-287 (369)
438 cd08234 threonine_DH_like L-th 75.1 24 0.00053 33.2 9.8 93 139-255 158-255 (334)
439 PRK00066 ldh L-lactate dehydro 74.9 25 0.00054 34.0 9.8 109 140-260 5-124 (315)
440 KOG0023 Alcohol dehydrogenase, 74.6 8.3 0.00018 37.6 6.2 96 140-255 181-277 (360)
441 PRK08267 short chain dehydroge 74.3 28 0.00061 31.6 9.7 71 142-224 2-85 (260)
442 PF12692 Methyltransf_17: S-ad 74.3 4.7 0.0001 34.8 4.0 101 140-255 28-132 (160)
443 TIGR02818 adh_III_F_hyde S-(hy 74.1 21 0.00045 34.8 9.3 97 139-255 184-285 (368)
444 PRK13243 glyoxylate reductase; 74.1 11 0.00023 36.8 7.1 94 140-262 149-244 (333)
445 cd08300 alcohol_DH_class_III c 73.9 18 0.00039 35.1 8.8 97 139-255 185-286 (368)
446 cd05288 PGDH Prostaglandin deh 73.9 21 0.00046 33.5 9.0 96 139-255 144-242 (329)
447 PRK06153 hypothetical protein; 73.7 5.1 0.00011 40.0 4.7 52 122-173 151-209 (393)
448 KOG4058 Uncharacterized conser 73.5 4.5 9.8E-05 35.1 3.7 64 139-209 71-134 (199)
449 PRK07102 short chain dehydroge 73.4 22 0.00049 31.9 8.7 75 142-224 2-84 (243)
450 PRK00045 hemA glutamyl-tRNA re 73.2 24 0.00053 35.4 9.7 101 140-261 181-283 (423)
451 cd08231 MDR_TM0436_like Hypoth 73.1 48 0.001 31.8 11.4 95 140-255 177-278 (361)
452 PF03435 Saccharop_dh: Sacchar 73.0 12 0.00027 36.7 7.4 109 144-262 1-126 (386)
453 PRK11524 putative methyltransf 72.8 5.9 0.00013 37.6 4.9 44 140-185 208-251 (284)
454 PTZ00082 L-lactate dehydrogena 72.7 49 0.0011 32.0 11.3 38 140-177 5-43 (321)
455 COG2084 MmsB 3-hydroxyisobutyr 72.7 16 0.00036 34.9 7.8 92 143-262 2-99 (286)
456 PLN02427 UDP-apiose/xylose syn 72.7 10 0.00022 37.1 6.7 77 140-224 13-94 (386)
457 PF06564 YhjQ: YhjQ protein; 72.4 48 0.001 31.0 10.6 47 214-262 115-177 (243)
458 PF01488 Shikimate_DH: Shikima 72.3 13 0.00028 31.1 6.3 97 140-259 11-110 (135)
459 PF10237 N6-adenineMlase: Prob 72.0 17 0.00038 31.7 7.2 92 140-256 25-122 (162)
460 cd08278 benzyl_alcohol_DH Benz 71.3 18 0.0004 35.0 8.1 93 140-255 186-283 (365)
461 TIGR00936 ahcY adenosylhomocys 71.2 1E+02 0.0022 31.1 13.3 43 139-182 193-236 (406)
462 cd05290 LDH_3 A subgroup of L- 71.0 56 0.0012 31.5 11.2 103 143-255 1-117 (307)
463 COG1893 ApbA Ketopantoate redu 70.9 28 0.0006 33.6 9.1 94 142-259 1-103 (307)
464 PRK07688 thiamine/molybdopteri 70.8 14 0.00031 36.1 7.1 34 140-174 23-58 (339)
465 cd05291 HicDH_like L-2-hydroxy 70.8 28 0.00061 33.2 9.1 74 142-226 1-78 (306)
466 PLN02350 phosphogluconate dehy 70.7 28 0.00061 35.9 9.5 103 142-262 7-111 (493)
467 cd08255 2-desacetyl-2-hydroxye 69.8 36 0.00078 31.1 9.4 91 139-255 96-188 (277)
468 PRK12480 D-lactate dehydrogena 69.5 29 0.00063 33.8 9.0 91 140-262 145-238 (330)
469 PRK10037 cell division protein 69.4 59 0.0013 29.8 10.7 21 164-186 30-50 (250)
470 PF11899 DUF3419: Protein of u 69.4 5.3 0.00011 39.8 3.8 62 196-260 274-337 (380)
471 KOG1209 1-Acyl dihydroxyaceton 69.3 5.7 0.00012 36.7 3.6 85 139-227 5-92 (289)
472 COG0677 WecC UDP-N-acetyl-D-ma 69.1 77 0.0017 31.9 11.6 112 142-262 10-133 (436)
473 PLN02702 L-idonate 5-dehydroge 69.1 17 0.00037 35.1 7.4 97 139-255 180-283 (364)
474 cd08242 MDR_like Medium chain 69.1 41 0.00088 31.5 9.8 87 139-255 154-243 (319)
475 cd08245 CAD Cinnamyl alcohol d 69.1 50 0.0011 31.0 10.5 94 139-256 161-255 (330)
476 TIGR02819 fdhA_non_GSH formald 69.0 20 0.00043 35.5 7.9 104 139-255 184-297 (393)
477 KOG0022 Alcohol dehydrogenase, 68.9 9.7 0.00021 37.1 5.2 97 140-254 192-291 (375)
478 cd05281 TDH Threonine dehydrog 68.9 31 0.00068 32.8 9.0 97 139-255 162-260 (341)
479 cd05293 LDH_1 A subgroup of L- 68.6 51 0.0011 31.8 10.3 74 141-225 3-80 (312)
480 PF02719 Polysacc_synt_2: Poly 68.4 15 0.00033 35.3 6.5 74 144-224 1-85 (293)
481 TIGR01035 hemA glutamyl-tRNA r 68.3 38 0.00083 34.0 9.8 99 140-261 179-280 (417)
482 cd01485 E1-1_like Ubiquitin ac 68.2 17 0.00038 32.5 6.6 33 141-174 19-53 (198)
483 PF11899 DUF3419: Protein of u 67.6 12 0.00026 37.3 5.9 42 138-181 33-74 (380)
484 PF13241 NAD_binding_7: Putati 67.5 50 0.0011 26.1 8.5 90 140-262 6-95 (103)
485 PRK08762 molybdopterin biosynt 67.3 16 0.00034 36.1 6.7 34 140-173 134-168 (376)
486 KOG4174 Uncharacterized conser 67.2 14 0.00029 34.9 5.7 122 140-262 56-195 (282)
487 KOG2853 Possible oxidoreductas 66.7 9 0.00019 37.8 4.6 39 141-179 86-128 (509)
488 PRK06718 precorrin-2 dehydroge 66.5 15 0.00033 33.1 5.9 66 139-223 8-77 (202)
489 PRK08328 hypothetical protein; 66.4 8 0.00017 35.6 4.1 35 140-174 26-61 (231)
490 PRK13699 putative methylase; P 66.3 10 0.00022 34.8 4.8 44 140-185 163-206 (227)
491 KOG1227 Putative methyltransfe 66.1 2.3 5E-05 40.9 0.5 96 140-252 194-290 (351)
492 PRK06223 malate dehydrogenase; 66.0 54 0.0012 31.1 9.9 37 142-178 3-40 (307)
493 TIGR00692 tdh L-threonine 3-de 65.9 36 0.00078 32.4 8.8 96 139-255 160-259 (340)
494 PRK12826 3-ketoacyl-(acyl-carr 65.9 49 0.0011 29.5 9.3 74 141-224 6-91 (251)
495 cd00755 YgdL_like Family of ac 65.8 23 0.0005 32.7 7.0 34 141-174 11-45 (231)
496 PRK11880 pyrroline-5-carboxyla 65.6 28 0.00061 32.2 7.8 43 142-184 3-48 (267)
497 PRK06194 hypothetical protein; 65.6 49 0.0011 30.5 9.5 75 141-225 6-92 (287)
498 PF08351 DUF1726: Domain of un 65.4 10 0.00022 29.9 4.0 39 214-259 9-47 (92)
499 PLN02688 pyrroline-5-carboxyla 65.4 36 0.00079 31.4 8.5 86 143-254 2-92 (266)
500 KOG3851 Sulfide:quinone oxidor 65.1 11 0.00024 36.9 4.8 34 140-173 38-73 (446)
No 1
>PRK04457 spermidine synthase; Provisional
Probab=100.00 E-value=4.6e-34 Score=268.10 Aligned_cols=207 Identities=19% Similarity=0.209 Sum_probs=180.4
Q ss_pred EeeCCCCcEEEEEeCCeEEEEEcCcCceEEEEecCCCcccchHHHHHhhcc-ccCCCCCEEEEeecccHHHHHHHHhCCC
Q 038076 86 AVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLP-AIVPNGPIAIYGLGGGTAAHLMLDLWPS 164 (345)
Q Consensus 86 ~~~s~yg~I~V~e~~~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~-~~~~p~~VLiIG~G~G~~~~~l~~~~p~ 164 (345)
-.++.||.|.|+|+++.|+|.||+...||.+...+|..+.+.|++.|+... ...++++||+||+|+|++++++++.+|+
T Consensus 11 ~~~~~~~~i~v~e~~~~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~ 90 (262)
T PRK04457 11 PAKAGFPEVGVSEEGGVRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPD 90 (262)
T ss_pred cccccCCCcEEEecCCEEEEEECCCcceeeeecCCcccccCHHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCC
Confidence 456789999999999999999999888999999999999999999986543 3456889999999999999999999999
Q ss_pred CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHH
Q 038076 165 LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLK 244 (345)
Q Consensus 165 ~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~ 244 (345)
.+|++|||||+|+++|+++|+.++ .++|++++++|+++++...+++||+|++|.|+...+|.++.+.+|++.++
T Consensus 91 ~~v~~VEidp~vi~~A~~~f~~~~------~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~ 164 (262)
T PRK04457 91 TRQTAVEINPQVIAVARNHFELPE------NGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCR 164 (262)
T ss_pred CeEEEEECCHHHHHHHHHHcCCCC------CCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHH
Confidence 999999999999999999998764 26899999999999998777899999999998777788899999999999
Q ss_pred hccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEecCCCCceEEEEeCC-CC
Q 038076 245 DRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGL-LP 318 (345)
Q Consensus 245 ~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~~~~~n~v~~a~~-~p 318 (345)
++|+|||++++|++..+. .....+++++++|++.+.+++. ...+|+++++.+ .|
T Consensus 165 ~~L~pgGvlvin~~~~~~------------------~~~~~l~~l~~~F~~~~~~~~~--~~~~N~v~~a~~~~~ 219 (262)
T PRK04457 165 NALSSDGIFVVNLWSRDK------------------RYDRYLERLESSFEGRVLELPA--ESHGNVAVFAFKSAP 219 (262)
T ss_pred HhcCCCcEEEEEcCCCch------------------hHHHHHHHHHHhcCCcEEEEec--CCCccEEEEEECCCC
Confidence 999999999999987654 3578899999999976776544 345688888865 35
No 2
>PLN02823 spermine synthase
Probab=99.97 E-value=1.4e-30 Score=251.75 Aligned_cols=215 Identities=20% Similarity=0.203 Sum_probs=170.8
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|++++. .|.|++|+.. |++.. ..+.|++.|++.+.+ ..|++||+||+|+|.+++
T Consensus 47 ~~~vl~~~~S~yQ~I~V~~~~~~g~~L~lDg~~-qs~~~------de~~YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~r 119 (336)
T PLN02823 47 VNSVLHTGTSEFQDIALVDTKPFGKVLIIDGKM-QSAEA------DEFVYHESLVHPALLHHPNPKTVFIMGGGEGSTAR 119 (336)
T ss_pred eccEEEeccCCCeEEEEEECCCCceEEEECCcc-ccccc------hHHHHHHHHHhHHHhhCCCCCEEEEECCCchHHHH
Confidence 4579999999999999999976 7889998865 43311 234688877766644 568899999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCC--CCCCCc
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG--KVLPQL 234 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~--~~p~~l 234 (345)
+++++.+..+|++|||||+|+++|++||.... ....+||++++++||+.|++..+++||+||+|++++. .++.+|
T Consensus 120 e~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~---~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~L 196 (336)
T PLN02823 120 EVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR---EAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQL 196 (336)
T ss_pred HHHhCCCCCeEEEEECCHHHHHHHHHhccccc---ccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhh
Confidence 99987677899999999999999999997542 1245899999999999999888889999999998753 345679
Q ss_pred chHHHHH-HHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceEE
Q 038076 235 EEVATWL-KLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENFL 311 (345)
Q Consensus 235 ~t~ef~~-~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~v 311 (345)
+|.|||+ .++++|+|||++++|..+.... ........++++++++|+ .|..+. +|.-.+.+-+
T Consensus 197 yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~-------------~~~~~~~~i~~tl~~vF~-~v~~y~~~vPsf~~~w~f 262 (336)
T PLN02823 197 YTKSFYERIVKPKLNPGGIFVTQAGPAGIL-------------THKEVFSSIYNTLRQVFK-YVVPYTAHVPSFADTWGW 262 (336)
T ss_pred ccHHHHHHHHHHhcCCCcEEEEeccCcchh-------------ccHHHHHHHHHHHHHhCC-CEEEEEeecCCCCCceEE
Confidence 9999999 9999999999999997754320 001568899999999999 565554 4543333446
Q ss_pred EEeCCCC
Q 038076 312 ALTGLLP 318 (345)
Q Consensus 312 ~~a~~~p 318 (345)
+++++.|
T Consensus 263 ~~aS~~~ 269 (336)
T PLN02823 263 VMASDHP 269 (336)
T ss_pred EEEeCCc
Confidence 6677665
No 3
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.97 E-value=5e-31 Score=245.32 Aligned_cols=212 Identities=23% Similarity=0.252 Sum_probs=168.2
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|+++.. .|.+.+|+.. |. . + .....|++.|++.|.+ .+|++||+||+|+|..+++
T Consensus 21 ~~vl~~~~s~yQ~i~i~~~~~~G~~l~ldg~~-q~-~---e--~de~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~e 93 (246)
T PF01564_consen 21 EEVLYEEKSPYQHIEIFESSPFGRILVLDGDV-QL-S---E--RDEFIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARE 93 (246)
T ss_dssp EEEEEEEEESSSEEEEEEETTTEEEEEETTEE-EE-E---T--TTHHHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHH
T ss_pred EEEEEccCCCCCcEEEEEecCcCcEEEECCeE-EE-E---E--echHHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhh
Confidence 369999999999999999965 6888899864 22 1 1 2245798888877754 5799999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC-cccEEEEcCCCCCCCCCCcch
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-RYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-~yD~Ii~D~f~~~~~p~~l~t 236 (345)
++++.+..+|++|||||.|+++|++||+.... ...+||++++++||+.|+++..+ +||+|++|++++...+..+++
T Consensus 94 ll~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~---~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t 170 (246)
T PF01564_consen 94 LLKHPPVESITVVEIDPEVVELARKYFPEFSE---GLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFT 170 (246)
T ss_dssp HTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT---TGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSS
T ss_pred hhhcCCcceEEEEecChHHHHHHHHhchhhcc---ccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccC
Confidence 99876678999999999999999999964321 14689999999999999998877 999999999997666666999
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCc-eEEEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGE-NFLAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~-n~v~~ 313 (345)
.|||+.++++|+|||++++|..+...+ ....+.+.++++++|+ .+..+. +|.-.+. ..++.
T Consensus 171 ~ef~~~~~~~L~~~Gv~v~~~~~~~~~---------------~~~~~~i~~tl~~~F~-~v~~~~~~vP~~~~~~~~~~~ 234 (246)
T PF01564_consen 171 REFYQLCKRRLKPDGVLVLQAGSPFLH---------------PELFKSILKTLRSVFP-QVKPYTAYVPSYGSGWWSFAS 234 (246)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEETTTT---------------HHHHHHHHHHHHTTSS-EEEEEEEECTTSCSSEEEEEE
T ss_pred HHHHHHHHhhcCCCcEEEEEccCcccc---------------hHHHHHHHHHHHHhCC-ceEEEEEEcCeecccceeEEE
Confidence 999999999999999999999655542 2568899999999999 665544 4543333 44666
Q ss_pred eCCCC
Q 038076 314 TGLLP 318 (345)
Q Consensus 314 a~~~p 318 (345)
+++.+
T Consensus 235 ~s~~~ 239 (246)
T PF01564_consen 235 ASKDI 239 (246)
T ss_dssp EESST
T ss_pred EeCCC
Confidence 66654
No 4
>PRK00811 spermidine synthase; Provisional
Probab=99.97 E-value=9.9e-30 Score=241.29 Aligned_cols=213 Identities=20% Similarity=0.195 Sum_probs=169.8
Q ss_pred CceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHH
Q 038076 80 NFQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 80 ~~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~ 156 (345)
..+++++.+|+||+|.|+++.+ .|.|.+|+.. |++. ...+.|++.+.+.|.+ .+|++||+||||+|.+++
T Consensus 20 ~~~~l~~~~s~yq~i~v~~~~~~g~~l~lDg~~-q~~~------~de~~Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~ 92 (283)
T PRK00811 20 VKKVLYEEKSPFQRIEIFETPEFGRLLALDGCV-MTTE------RDEFIYHEMMTHVPLFAHPNPKRVLIIGGGDGGTLR 92 (283)
T ss_pred eccEEEEcCCCCeeEEEEEcCCccEEEEECCee-eecC------cchhhHHHHhhhHHHhhCCCCCEEEEEecCchHHHH
Confidence 4579999999999999999976 6999999875 3321 2246788877766654 578999999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcch
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEE 236 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t 236 (345)
+++++.+..+|++|||||+|+++|+++|... ......+||++++++|++.|++..+++||+|++|++++..++.++++
T Consensus 93 ~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~--~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t 170 (283)
T PRK00811 93 EVLKHPSVEKITLVEIDERVVEVCRKYLPEI--AGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFT 170 (283)
T ss_pred HHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh--ccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhH
Confidence 9998656689999999999999999998521 11123489999999999999987778999999999887666678999
Q ss_pred HHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCc-eEEEE
Q 038076 237 VATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGE-NFLAL 313 (345)
Q Consensus 237 ~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~-n~v~~ 313 (345)
.|||+.++++|+|||++++|..+...+ ...+..+.++|+++|+ +|..+. +|...++ ..+++
T Consensus 171 ~ef~~~~~~~L~~gGvlv~~~~~~~~~---------------~~~~~~i~~tl~~~F~-~v~~~~~~vp~~~~~~w~f~~ 234 (283)
T PRK00811 171 KEFYENCKRALKEDGIFVAQSGSPFYQ---------------ADEIKDMHRKLKEVFP-IVRPYQAAIPTYPSGLWSFTF 234 (283)
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCcccC---------------HHHHHHHHHHHHHHCC-CEEEEEeECCcccCchheeEE
Confidence 999999999999999999987765431 1468899999999999 565444 3443333 33567
Q ss_pred eCCC
Q 038076 314 TGLL 317 (345)
Q Consensus 314 a~~~ 317 (345)
+++.
T Consensus 235 as~~ 238 (283)
T PRK00811 235 ASKN 238 (283)
T ss_pred eecC
Confidence 7763
No 5
>PLN02366 spermidine synthase
Probab=99.97 E-value=1.8e-29 Score=241.58 Aligned_cols=211 Identities=19% Similarity=0.246 Sum_probs=168.4
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHLM 158 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~l 158 (345)
+++++.+|+||+|.|+|+.. .|.|.+|+.. |. .++. ++.|.+.|.++|.. .+|++||+||||+|.+++++
T Consensus 37 ~~l~~~~s~yQ~i~v~~~~~~g~~L~lDg~~-q~----~~~d--e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 37 KVLFQGKSDFQDVLVFESATYGKVLVLDGVI-QL----TERD--ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred eEEEeccCCCeeEEEEEcCCCceEEEECCEe-ee----cCcc--HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHH
Confidence 69999999999999999976 6999999974 22 2222 46788877776653 67899999999999999999
Q ss_pred HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcchH
Q 038076 159 LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 159 ~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
+++.+..+|++|||||+|+++|+++|.... ....+||++++++||+.|+++. +++||+||+|++++..++.++++.
T Consensus 110 lk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~---~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ 186 (308)
T PLN02366 110 ARHSSVEQIDICEIDKMVIDVSKKFFPDLA---VGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEK 186 (308)
T ss_pred HhCCCCCeEEEEECCHHHHHHHHHhhhhhc---cccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHH
Confidence 987445899999999999999999995321 1245899999999999999765 578999999999887667789999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE--EecCCCCc-eEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK--RMPERNGE-NFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~--~~~~~~~~-n~v~~a 314 (345)
+||+.++++|+|||++++|..+.-.+ ....+.++++|+++|+..+.++ .+|.-.++ ..++++
T Consensus 187 ef~~~~~~~L~pgGvlv~q~~s~~~~---------------~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~a 251 (308)
T PLN02366 187 PFFESVARALRPGGVVCTQAESMWLH---------------MDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLC 251 (308)
T ss_pred HHHHHHHHhcCCCcEEEECcCCcccc---------------hHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEE
Confidence 99999999999999999887654331 1568899999999996466544 45544333 446666
Q ss_pred CCC
Q 038076 315 GLL 317 (345)
Q Consensus 315 ~~~ 317 (345)
++.
T Consensus 252 s~~ 254 (308)
T PLN02366 252 SKE 254 (308)
T ss_pred ECC
Confidence 654
No 6
>PRK01581 speE spermidine synthase; Validated
Probab=99.96 E-value=7.3e-29 Score=239.45 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=171.4
Q ss_pred cCceEEEEeeCCCCcEEEEEeCCeEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHH
Q 038076 79 ENFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAH 156 (345)
Q Consensus 79 ~~~~ll~~~~s~yg~I~V~e~~~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~ 156 (345)
...+++++.+|+||+|.|+|+++. .|++||.. |.+. .-++.|++.+.+.+. ...|++||+||||+|..++
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et~~~-~L~LDG~~-Q~se------~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlr 166 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQVSDI-RLYLDKQL-QFSS------VDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALR 166 (374)
T ss_pred cccCEEEecCCCCceEEEEEcCCE-EEEECCee-cccc------ccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHH
Confidence 344799999999999999999876 69999975 2221 113458887766553 3678999999999999999
Q ss_pred HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCC-CCCCcc
Q 038076 157 LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGK-VLPQLE 235 (345)
Q Consensus 157 ~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~-~p~~l~ 235 (345)
+++++.+..+|++|||||+|+++|++++.++..++....+||++++++||++|++..+++||+||+|++++.. ....++
T Consensus 167 elLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~Ly 246 (374)
T PRK01581 167 EVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLY 246 (374)
T ss_pred HHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhh
Confidence 9998766789999999999999999987776555555679999999999999998878899999999987643 356799
Q ss_pred hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCCCceEEEE
Q 038076 236 EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERNGENFLAL 313 (345)
Q Consensus 236 t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~~~n~v~~ 313 (345)
+.|||+.|+++|+|||+++++..++..+ ...+..+.++++++|+ .+..+. +|...+...+++
T Consensus 247 T~EFy~~~~~~LkPgGV~V~Qs~sp~~~---------------~~~~~~i~~tL~~af~-~v~~y~t~vPsyg~~WgF~~ 310 (374)
T PRK01581 247 TSELFARIATFLTEDGAFVCQSNSPADA---------------PLVYWSIGNTIEHAGL-TVKSYHTIVPSFGTDWGFHI 310 (374)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCChhhh---------------HHHHHHHHHHHHHhCC-ceEEEEEecCCCCCceEEEE
Confidence 9999999999999999999886544331 1355778999999999 444333 455444456777
Q ss_pred eCCCCC
Q 038076 314 TGLLPD 319 (345)
Q Consensus 314 a~~~p~ 319 (345)
+++.|.
T Consensus 311 as~~~~ 316 (374)
T PRK01581 311 AANSAY 316 (374)
T ss_pred EeCCcc
Confidence 776653
No 7
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=4.8e-28 Score=228.41 Aligned_cols=203 Identities=19% Similarity=0.195 Sum_probs=161.7
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|.|+.|.++++.. .+.|.+|+.. |.+ ....+.|...+.+.|.+ +.|++||+||+|.|.++++
T Consensus 21 ~~~l~~~ks~~q~i~i~~~~~~g~~l~ldg~~-q~~------e~de~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRe 93 (282)
T COG0421 21 ERVLYEEKSEYQDIEIFESEDFGKVLVLDGVV-QLT------ERDEFIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLRE 93 (282)
T ss_pred eeeeeeccCCceEEEEEeccccceEEEecChh-hhc------cchhHHHHHHHHhchhhhCCCCCeEEEECCCccHHHHH
Confidence 358999999999999999654 7888999865 221 12234576555555543 5668999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..++++|||||.|+++||+||+..... . .|||++++++||++|+++..++||+||+|.+++.++...|+|.
T Consensus 94 vlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--~-~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~ 170 (282)
T COG0421 94 VLKHLPVERITMVEIDPAVIELARKYLPEPSGG--A-DDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTE 170 (282)
T ss_pred HHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--c-CCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCH
Confidence 999988899999999999999999999865421 2 2899999999999999988889999999999986555779999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCC-EEEEEecCCCCc
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGK-VSWKRMPERNGE 308 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~-v~~~~~~~~~~~ 308 (345)
|||+.|+++|+|+|++++|..++..+ ........+.++++|+.. .+...+|.-.++
T Consensus 171 eFy~~~~~~L~~~Gi~v~q~~~~~~~---------------~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g 227 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQAGSPFLQ---------------DEEIALAYRNVSRVFSIVPPYVAPIPTYPSG 227 (282)
T ss_pred HHHHHHHHhcCCCcEEEEecCCcccc---------------hHHHHHHHHHHHhhccccccceeccceecCC
Confidence 99999999999999999996653331 135678899999999832 233446655555
No 8
>PRK03612 spermidine synthase; Provisional
Probab=99.95 E-value=2.4e-27 Score=242.15 Aligned_cols=215 Identities=21% Similarity=0.190 Sum_probs=163.0
Q ss_pred cCceEEEEeeCCCCcEEEEEeC----CeEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeeccc
Q 038076 79 ENFQVVTAVRSKYNDIVIVDTP----KSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGG 152 (345)
Q Consensus 79 ~~~~ll~~~~s~yg~I~V~e~~----~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G 152 (345)
...+++++++|+||+|.|.+++ +.+.|.+|+....+. . + +..|++.+...+. ..++++||+||+|+|
T Consensus 237 ~~~~v~~~~~s~yq~i~v~~~~~~~~~~~~L~ldG~~q~s~---~--d--e~~y~e~l~~~~l~~~~~~~rVL~IG~G~G 309 (521)
T PRK03612 237 YGDPVVYAEQTPYQRIVVTRRGNGRGPDLRLYLNGRLQFSS---R--D--EYRYHEALVHPAMAASARPRRVLVLGGGDG 309 (521)
T ss_pred ccCeEEEEccCCCeEEEEEEecCCCCcceEEEECCEeeccC---c--c--HHHHHHHHHHHHHhhCCCCCeEEEEcCCcc
Confidence 4567999999999999999963 348999999752111 1 1 2457766554332 256889999999999
Q ss_pred HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCC-C
Q 038076 153 TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKV-L 231 (345)
Q Consensus 153 ~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~-p 231 (345)
..+++++++.+..+|++|||||+|++.|++++.+++.++...++||++++++|+++|++..+++||+|++|.+++... +
T Consensus 310 ~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~ 389 (521)
T PRK03612 310 LALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPAL 389 (521)
T ss_pred HHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcch
Confidence 999999975334899999999999999999766555443445689999999999999987788999999998776433 3
Q ss_pred CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CCCCEEEEE--ecCCCCc
Q 038076 232 PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FPGKVSWKR--MPERNGE 308 (345)
Q Consensus 232 ~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~~~v~~~~--~~~~~~~ 308 (345)
.++++.||++.++++|+|||++++|..++..+ ...+.++.++++++ | .+.-+. +|. .+.
T Consensus 390 ~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~---------------~~~~~~i~~~l~~~gf--~v~~~~~~vps-~g~ 451 (521)
T PRK03612 390 GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA---------------PKAFWSIEATLEAAGL--ATTPYHVNVPS-FGE 451 (521)
T ss_pred hccchHHHHHHHHHhcCCCeEEEEecCCcccc---------------hHHHHHHHHHHHHcCC--EEEEEEeCCCC-cch
Confidence 57999999999999999999999997655431 15678999999999 8 333232 343 234
Q ss_pred eEEEEeCCCC
Q 038076 309 NFLALTGLLP 318 (345)
Q Consensus 309 n~v~~a~~~p 318 (345)
.-++++++.+
T Consensus 452 w~f~~as~~~ 461 (521)
T PRK03612 452 WGFVLAGAGA 461 (521)
T ss_pred hHHHeeeCCC
Confidence 4466665553
No 9
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.95 E-value=3.6e-26 Score=215.52 Aligned_cols=210 Identities=19% Similarity=0.208 Sum_probs=165.3
Q ss_pred ceEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHH
Q 038076 81 FQVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHL 157 (345)
Q Consensus 81 ~~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~ 157 (345)
.+++++.+|+||+|.|+++.. .|.|.+|+.. |++ ...++.|++.+..++.+ ..|++||+||+|+|.+++.
T Consensus 17 ~~~l~~~~s~~q~i~v~~~~~~g~~l~ldg~~-q~~------~~~e~~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ 89 (270)
T TIGR00417 17 KKVLYHEKSEFQDLEIFETEEFGNVLVLDGVV-QTT------ERDEFIYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLRE 89 (270)
T ss_pred eeEEEEccCCCeeEEEEEcCCCceEEEECCcc-ccc------CchHHHHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHH
Confidence 469999999999999999976 6999999875 333 12346788877766543 4678999999999999999
Q ss_pred HHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchH
Q 038076 158 MLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 158 l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
++++.+..++++||+|+++++.|+++|.... ....+++++++++|+++|++..+++||+|++|.+++......+++.
T Consensus 90 ll~~~~~~~v~~veid~~vi~~a~~~~~~~~---~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ 166 (270)
T TIGR00417 90 VLKHKSVEKATLVDIDEKVIELSKKFLPSLA---GSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTK 166 (270)
T ss_pred HHhCCCcceEEEEeCCHHHHHHHHHHhHhhc---ccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHH
Confidence 9887657899999999999999999984321 1235789999999999999887889999999998765556678999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEE--ecCCC-CceEEEEe
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKR--MPERN-GENFLALT 314 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~--~~~~~-~~n~v~~a 314 (345)
+|++.++++|+|||+++++..+... ....++.+.++++++|+ .+..+. +|.-. +...++++
T Consensus 167 ef~~~~~~~L~pgG~lv~~~~~~~~---------------~~~~~~~~~~tl~~~F~-~v~~~~~~vp~~~~g~~~~~~a 230 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQSESPWI---------------QLELITDLKRDVKEAFP-ITEYYTANIPTYPSGLWTFTIG 230 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcCCCccc---------------CHHHHHHHHHHHHHHCC-CeEEEEEEcCccccchhEEEEE
Confidence 9999999999999999998544332 12568889999999999 454333 44322 33456666
Q ss_pred CC
Q 038076 315 GL 316 (345)
Q Consensus 315 ~~ 316 (345)
++
T Consensus 231 s~ 232 (270)
T TIGR00417 231 SK 232 (270)
T ss_pred EC
Confidence 65
No 10
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.93 E-value=4.3e-25 Score=209.32 Aligned_cols=226 Identities=17% Similarity=0.162 Sum_probs=176.5
Q ss_pred chhhhhhhhccCceEEEEeeCCCCcEEEEEeCCeEEEEEcCcCceEEEEecCCCcccchHHHHHhhcc--ccCCCCCEEE
Q 038076 69 QYDQRQQEEEENFQVVTAVRSKYNDIVIVDTPKSRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLP--AIVPNGPIAI 146 (345)
Q Consensus 69 ~~~~~~~~~~~~~~ll~~~~s~yg~I~V~e~~~~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~--~~~~p~~VLi 146 (345)
-.+...++.-.+.++|+..+|+||+|.|.+.++.+.|++|++.+.++-+ +..|++.+..-+ .....++||+
T Consensus 223 rit~~~eqqlygdeIIh~~qspYQ~iVvTr~g~d~rLYldG~LQfsTrD-------e~RYhEsLV~pals~~~~a~~vLv 295 (508)
T COG4262 223 RITHTSEQQLYGDEIIHAIQSPYQRIVVTRRGDDLRLYLDGGLQFSTRD-------EYRYHESLVYPALSSVRGARSVLV 295 (508)
T ss_pred ceeehHHHHhhcCceeeeccCccceEEEEEecCceEEEEcCceeeeech-------hhhhhheeeecccccccccceEEE
Confidence 3344455556778899999999999999999999999999998555432 234766443222 2246789999
Q ss_pred EeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCC
Q 038076 147 YGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFS 226 (345)
Q Consensus 147 IG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~ 226 (345)
||+|.|-..++++++..-.+|+-||+||.|++.+++..-+...+.++..|||++++.+||.+|++...+.||.||+|+.+
T Consensus 296 lGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~D 375 (508)
T COG4262 296 LGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPD 375 (508)
T ss_pred EcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCC
Confidence 99999999999998533589999999999999999776666666678899999999999999999999999999999999
Q ss_pred CCCC-CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE--EEEec
Q 038076 227 EGKV-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS--WKRMP 303 (345)
Q Consensus 227 ~~~~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~--~~~~~ 303 (345)
+..+ ...+|+.|||..++++|+++|.++++..++-..+ ..+..+.+|++++=- .+. ..-+|
T Consensus 376 P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp---------------~vfw~i~aTik~AG~-~~~Pyhv~VP 439 (508)
T COG4262 376 PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP---------------RVFWRIDATIKSAGY-RVWPYHVHVP 439 (508)
T ss_pred CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCC---------------ceeeeehhHHHhCcc-eeeeeEEecC
Confidence 8764 3669999999999999999999999988776532 357788899988731 222 11245
Q ss_pred CCCCceEEEEeCCCC
Q 038076 304 ERNGENFLALTGLLP 318 (345)
Q Consensus 304 ~~~~~n~v~~a~~~p 318 (345)
. -++.-++++++.+
T Consensus 440 T-FGeWGf~l~~~~~ 453 (508)
T COG4262 440 T-FGEWGFILAAPGD 453 (508)
T ss_pred c-ccccceeeccccc
Confidence 3 3445567776654
No 11
>PRK00536 speE spermidine synthase; Provisional
Probab=99.93 E-value=7.3e-25 Score=204.66 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=150.2
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhcccc--CCCCCEEEEeecccHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHLM 158 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~l 158 (345)
+++++.+|+||+|.|+|+.. +|.|.+| .. |. .. .-++.|++.+.+.|.. ++|++||+||+|.|..++++
T Consensus 19 ~~L~~~kS~~Q~i~i~es~~fGr~LvLD-~~-~~--te----~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REv 90 (262)
T PRK00536 19 AKLLDVRSEHNILEIFKSKDFGEIAMLN-KQ-LL--FK----NFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQL 90 (262)
T ss_pred EEEEccCCCCcEEEEEEccccccEEEEe-ee-ee--ec----chhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHH
Confidence 58999999999999999865 7999999 32 32 11 2356787777766654 68899999999999999999
Q ss_pred HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHH
Q 038076 159 LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVA 238 (345)
Q Consensus 159 ~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~e 238 (345)
+++ |. +|+.||||++|++++|+||..- . .+.+|||++++.. +.+...++||+||+|.. ++.+
T Consensus 91 Lkh-~~-~v~mVeID~~Vv~~~k~~lP~~--~-~~~~DpRv~l~~~----~~~~~~~~fDVIIvDs~---------~~~~ 152 (262)
T PRK00536 91 FKY-DT-HVDFVQADEKILDSFISFFPHF--H-EVKNNKNFTHAKQ----LLDLDIKKYDLIICLQE---------PDIH 152 (262)
T ss_pred HCc-CC-eeEEEECCHHHHHHHHHHCHHH--H-HhhcCCCEEEeeh----hhhccCCcCCEEEEcCC---------CChH
Confidence 986 54 9999999999999999998632 1 2478999999972 33334578999999952 4579
Q ss_pred HHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEecC-CCCceEEEEeCCC
Q 038076 239 TWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPE-RNGENFLALTGLL 317 (345)
Q Consensus 239 f~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~-~~~~n~v~~a~~~ 317 (345)
||+.|+++|+|||+++++..++..+ ...++.+.++++++|+ .|..|.... ..+.+.++++++.
T Consensus 153 fy~~~~~~L~~~Gi~v~Qs~sp~~~---------------~~~~~~i~~~l~~~F~-~v~~y~~~vp~~g~wgf~~aS~~ 216 (262)
T PRK00536 153 KIDGLKRMLKEDGVFISVAKHPLLE---------------HVSMQNALKNMGDFFS-IAMPFVAPLRILSNKGYIYASFK 216 (262)
T ss_pred HHHHHHHhcCCCcEEEECCCCcccC---------------HHHHHHHHHHHHhhCC-ceEEEEecCCCcchhhhheecCC
Confidence 9999999999999999887765542 1568999999999999 555444322 1244557777765
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.66 E-value=1.8e-16 Score=128.65 Aligned_cols=111 Identities=20% Similarity=0.328 Sum_probs=88.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
|..+||+||||+|.++.++++.+|+.+|++||+||++++.|++.+.... ..++++++++|+ .+.....++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~i~~~~~d~-~~~~~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG------LSDRITFVQGDA-EFDPDFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT------TTTTEEEEESCC-HGGTTTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEECcc-ccCcccCCCCCE
Confidence 4678999999999999999997899999999999999999999982111 268999999999 544456778999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|+++.+........-...++++.++++|+|||+++++.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99976211112211234678999999999999999875
No 13
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=99.62 E-value=6e-16 Score=153.10 Aligned_cols=172 Identities=20% Similarity=0.315 Sum_probs=141.1
Q ss_pred CCCcccchHHHHHhhc-ccc--------CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC
Q 038076 120 GIHKWTGSYWDEFVSL-PAI--------VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE 190 (345)
Q Consensus 120 ~p~~l~~~Y~~~~~~l-~~~--------~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~ 190 (345)
...++...|+..|.+. +.. .....+|++|.|+|.++.++...+|..++++|||||+|++.|+.||++..
T Consensus 266 r~~~l~s~~h~~m~~g~aL~~n~~~~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q-- 343 (482)
T KOG2352|consen 266 RKPELASQYHQMMIGGLALIMNRPPQKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ-- 343 (482)
T ss_pred cCcccCcchhhhhhccceeccccCchhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--
Confidence 3347788898877543 222 23578999999999999999988999999999999999999999999875
Q ss_pred CCCCCCCcEEEEEccccccccc------CCCcccEEEEcCCCCCC-----CCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 191 KPTATGGVLQVHIGDVFSPSED------ASGRYAGIVVDLFSEGK-----VLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 191 ~~~~~~~rv~v~~gDa~~~l~~------~~~~yD~Ii~D~f~~~~-----~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..|.++++.||..|+++ .+..||++++|+.+.+. +|+.+.+.++++.++..|.|.|++++|+..
T Consensus 344 -----~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 344 -----SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred -----hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 34899999999999875 35689999999877642 456688999999999999999999999998
Q ss_pred CCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEEEecCCCCceEEEEeCCCC
Q 038076 260 IDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWKRMPERNGENFLALTGLLP 318 (345)
Q Consensus 260 ~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~~~~~~~~~n~v~~a~~~p 318 (345)
++. .+..++...|+++|+ +.+.+.+.+ ..|.++++...|
T Consensus 419 r~~-----------------~~~~~~~~~l~~vf~-~l~~~~~~~--~~N~il~~~~~~ 457 (482)
T KOG2352|consen 419 RNS-----------------SFKDEVLMNLAKVFP-QLYHHQLEE--DVNEILIGQMPP 457 (482)
T ss_pred CCc-----------------chhHHHHHhhhhhhH-HHhhhhccC--CCceeEEeecCh
Confidence 886 467899999999999 565445544 677777776554
No 14
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=99.61 E-value=1.1e-15 Score=142.24 Aligned_cols=209 Identities=16% Similarity=0.133 Sum_probs=156.7
Q ss_pred eEEEEeeCCCCcEEEEEeCC-eEEEEEcCcCceEEEEecCCCcccchHHHHHhhccc--cCCCCCEEEEeecccHHHHHH
Q 038076 82 QVVTAVRSKYNDIVIVDTPK-SRMLLLDSTYNVHSIINKGIHKWTGSYWDEFVSLPA--IVPNGPIAIYGLGGGTAAHLM 158 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~-~r~L~ld~~~~~~~~~~~~p~~l~~~Y~~~~~~l~~--~~~p~~VLiIG~G~G~~~~~l 158 (345)
++++..+|.|+.+.|.++.. .+.|.+|+.. +. +..-.+.|.+.++.+|. .++|++||+||+|.|...+..
T Consensus 67 ~vl~~ekS~~qdvlvf~s~tyg~vlvlDgvi--ql-----te~de~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrev 139 (337)
T KOG1562|consen 67 KVLHDEKSDSQDVLVFESATYGKVLVLDGVI--QL-----TERDEFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREV 139 (337)
T ss_pred eecccCchhHHHHHHHHHhhhheeeeeCCee--eC-----CccccccceeeeeccccccCCCCCeEEEEecCCccceeee
Confidence 58888999999999999754 5667888753 11 12335678777777775 368999999999999999988
Q ss_pred HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEEEcCCCCCCCCCCcchH
Q 038076 159 LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIVVDLFSEGKVLPQLEEV 237 (345)
Q Consensus 159 ~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii~D~f~~~~~p~~l~t~ 237 (345)
.++..-..|+.+|||..|++..++|+.--.. .+.++++.++.|||..|++.. .++||+||.|..++..+...++..
T Consensus 140 ikH~~ve~i~~~eiD~~Vie~sk~y~p~la~---gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 140 IKHKSVENILLCEIDENVIESSKQYLPTLAC---GYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred eccccccceeeehhhHHHHHHHHHHhHHHhc---ccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHH
Confidence 8774447999999999999999999952211 378999999999999999875 789999999988875555668999
Q ss_pred HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCE-EEEEecCCC-CceEEEEeC
Q 038076 238 ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKV-SWKRMPERN-GENFLALTG 315 (345)
Q Consensus 238 ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v-~~~~~~~~~-~~n~v~~a~ 315 (345)
.+|+.+.+.||+||+++..--+-.-+ ....+...+..+.+|+..- .|-.+|.-+ +...+.+.+
T Consensus 217 ~~~~~v~~aLk~dgv~~~q~ec~wl~---------------~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 217 PYFGLVLDALKGDGVVCTQGECMWLH---------------LDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred HHHHHHHHhhCCCcEEEEecceehHH---------------HHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 99999999999999997654222211 1456666777788898322 244566422 334444555
No 15
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=3.2e-13 Score=110.38 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=87.5
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcccEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYAGI 220 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD~I 220 (345)
.+||++|||+|+++..+++.. ..+++++|+||..+++|++.+..... ..+++++++|.+++.+ ...++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL------DDRVEVIVGDARDLPEPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT------TTTEEEEESHHHHHHHTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC------CceEEEEECchhhchhhccCceeEEE
Confidence 479999999999999999886 79999999999999999999865432 4679999999999873 357899999
Q ss_pred EEcCCCCCCCC----CCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGKVL----PQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~~p----~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+.|.+-..... ..-...+|++.+.+.|+|||++++.++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99875543211 112456899999999999999988654
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.44 E-value=3e-12 Score=114.62 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=89.4
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.+...+.+.++.+||+||||+|..+..+.+..|+.+|+++|+++.+++.|++...... -++++++.+|+.++
T Consensus 35 d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~-------l~~i~~~~~d~~~~ 107 (187)
T PRK00107 35 DSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG-------LKNVTVVHGRAEEF 107 (187)
T ss_pred HHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC-------CCCEEEEeccHhhC
Confidence 44444455556789999999999999998887888999999999999999998875432 23499999999885
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
- . .++||+|+++.+. .-.++++.+.+.|+|||.+++-..
T Consensus 108 ~-~-~~~fDlV~~~~~~--------~~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 108 G-Q-EEKFDVVTSRAVA--------SLSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred C-C-CCCccEEEEcccc--------CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 3 3 6789999986532 125789999999999999987644
No 17
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=8.3e-13 Score=120.35 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=94.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-ccccccccc-CC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSED-AS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~-~~ 214 (345)
...+++||+||.+.|..+.+++...| +.+++.+|+||+..+.|+++|...+. +++++++. +|+.+.+.. ..
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~------~~~i~~~~~gdal~~l~~~~~ 130 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV------DDRIELLLGGDALDVLSRLLD 130 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC------cceEEEEecCcHHHHHHhccC
Confidence 35789999999999999999998877 78999999999999999999975543 67899999 699999875 67
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE-Eec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV-NCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv-n~~ 258 (345)
+.||+||+|+....+ .+||+.+.++|+|||++++ |+.
T Consensus 131 ~~fDliFIDadK~~y-------p~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 131 GSFDLVFIDADKADY-------PEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred CCccEEEEeCChhhC-------HHHHHHHHHHhCCCcEEEEeecc
Confidence 999999999866543 5899999999999999887 554
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.42 E-value=1.1e-12 Score=115.34 Aligned_cols=111 Identities=16% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||+||||+|.++..+++..|..+|+++|+++..++.+++++..... .+++++..|..+.+. +++||+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-------~~v~~~~~d~~~~~~--~~~fD~ 101 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-------ENVEVVQSDLFEALP--DGKFDL 101 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-------TTEEEEESSTTTTCC--TTCEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-------ccccccccccccccc--ccceeE
Confidence 57899999999999999999999988999999999999999998865442 229999999988764 689999
Q ss_pred EEEcCCCCCCCC-CCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVL-PQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p-~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+++.+...... ......++++.++++|+|||.+.+....
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 999764322211 1123578999999999999999775543
No 19
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.41 E-value=3.1e-12 Score=104.96 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=86.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+|++||||.|..+..+.+..|+.+++++|+++.+++.++++..... .++++++.+|+...+....++||
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG-------VSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC-------CCceEEEeccccccChhhcCCCC
Confidence 34578999999999999999998888999999999999999998764322 24689999998865544557999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.|+++... . ...++++.+.+.|+|||.+++++.
T Consensus 91 ~v~~~~~~-----~--~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGSG-----G--LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCcc-----h--hHHHHHHHHHHHcCCCCEEEEEec
Confidence 99986421 1 124899999999999999999875
No 20
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.40 E-value=2.6e-13 Score=123.09 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=88.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
..+|++||+||+++|..+.++++..| +.+|+.+|+||+..+.|+++|...+ .+.+++++.+|+.+++.+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag------~~~~I~~~~gda~~~l~~l~~~ 116 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG------LDDRIEVIEGDALEVLPELAND 116 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT------GGGGEEEEES-HHHHHHHHHHT
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC------CCCcEEEEEeccHhhHHHHHhc
Confidence 35789999999999999999998766 6899999999999999999996543 256999999999998764
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..++||+||+|+....+ .++|+.+.++|+|||++++.
T Consensus 117 ~~~~~fD~VFiDa~K~~y-------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 117 GEEGQFDFVFIDADKRNY-------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp TTTTSEEEEEEESTGGGH-------HHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCceeEEEEcccccch-------hhHHHHHhhhccCCeEEEEc
Confidence 13589999999855422 57899999999999999985
No 21
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.37 E-value=1.8e-12 Score=120.01 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=87.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---- 212 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---- 212 (345)
..++++||+||+|+|+.+.++.+..+ +.+|+++|+||+.++.|++++...+. +.+++++.+|+.+.+..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl------~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV------DHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEEccHHHHHHHHHhC
Confidence 35689999999999998888887644 68999999999999999999865432 46899999999998754
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..++||+|++|+..+.+ .++++.+.+.|+|||++++
T Consensus 140 ~~~~~fD~VfiDa~k~~y-------~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 140 DPKPEFDFAFVDADKPNY-------VHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCCCCEEEECCCHHHH-------HHHHHHHHHhcCCCeEEEE
Confidence 14689999999754322 3689999999999999886
No 22
>PLN02476 O-methyltransferase
Probab=99.36 E-value=2.5e-12 Score=121.39 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=89.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--- 213 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--- 213 (345)
..++++||+||+|+|..+.++....| +.+|+.+|+||+..+.|+++|...+. .++++++.||+.++|...
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl------~~~I~li~GdA~e~L~~l~~~ 189 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV------SHKVNVKHGLAAESLKSMIQN 189 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEEcCHHHHHHHHHhc
Confidence 35789999999999999999987654 67899999999999999999965442 468999999999988642
Q ss_pred --CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 --SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 --~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+||+|+....+ .++|+.+.++|+|||+++++
T Consensus 190 ~~~~~FD~VFIDa~K~~Y-------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 190 GEGSSYDFAFVDADKRMY-------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred ccCCCCCEEEECCCHHHH-------HHHHHHHHHhcCCCcEEEEe
Confidence 4689999999865432 57899999999999999874
No 23
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.33 E-value=4.7e-11 Score=106.30 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=84.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+..|+.+|+++|++|.+++.|+++..... -++++++.+|+...+ .++||
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~-------~~~i~~~~~d~~~~~---~~~~D 99 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG-------CGNIDIIPGEAPIEL---PGKAD 99 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC-------CCCeEEEecCchhhc---CcCCC
Confidence 46689999999999999999988888999999999999999998774222 246899999985432 46899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++.... ...++++.+.+.|+|||.++++.....
T Consensus 100 ~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~~~ 135 (187)
T PRK08287 100 AIFIGGSGG-------NLTAIIDWSLAHLHPGGRLVLTFILLE 135 (187)
T ss_pred EEEECCCcc-------CHHHHHHHHHHhcCCCeEEEEEEecHh
Confidence 999864221 235789999999999999998765443
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=1.7e-11 Score=109.15 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=82.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+....|+.+|++||+++.+++.+++...... -++++++.+|+.++. ..++||+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~-------~~~i~~i~~d~~~~~--~~~~fD~ 112 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG-------LNNVEIVNGRAEDFQ--HEEQFDV 112 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC-------CCCeEEEecchhhcc--ccCCccE
Confidence 4789999999999999998877788999999999999999988764222 246999999998862 3579999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+++... .-.++++.+.+.|+|||.+++-..
T Consensus 113 I~s~~~~--------~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 113 ITSRALA--------SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred EEehhhh--------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9987521 124688899999999999987643
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.32 E-value=1.4e-11 Score=111.38 Aligned_cols=112 Identities=16% Similarity=0.102 Sum_probs=86.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc--cCCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE--DASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~--~~~~~y 217 (345)
+..+||+||||+|..+..+.+..|+.++++||+++.+++.|++.+.... -++++++++|+.+.+. ..+++|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~-------~~~v~~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG-------LTNLRLLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC-------CCCEEEEecCHHHHHHHHcCcccc
Confidence 4678999999999999999888888999999999999999998875332 2579999999933333 246789
Q ss_pred cEEEEcCCCCCCCC-C---CcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVL-P---QLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p-~---~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|++....+.... . ......+++.+.+.|+|||++++...
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 99998543322111 1 12347899999999999999987543
No 26
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.32 E-value=1.9e-11 Score=110.86 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=119.8
Q ss_pred cccchHHHHHhhcccc--CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 038076 123 KWTGSYWDEFVSLPAI--VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 123 ~l~~~Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~ 200 (345)
..+.++.+...-.... .+..+||+-..|-|..+.+.+++ ...+|..||.||.|+++|+-+-.-.++ .+.+++
T Consensus 115 ~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l-----~~~~i~ 188 (287)
T COG2521 115 KGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSREL-----FEIAIK 188 (287)
T ss_pred cCcCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccc-----cccccE
Confidence 4455566655433322 35789999999999999988874 446999999999999999876544332 356899
Q ss_pred EEEccccccccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 201 VHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 201 v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
++.||+.+++++ .++.||+||.|.+.- +...+||+.|||+++.+.|+|||.+.-.+..+... -.| .
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiHDPPRf-S~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---yrG---------~ 255 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIHDPPRF-SLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---YRG---------L 255 (287)
T ss_pred EecccHHHHHhcCCccccceEeeCCCcc-chhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---ccc---------C
Confidence 999999999987 567899999997542 33458999999999999999999998777776642 122 2
Q ss_pred HHHHHHHHHHHHH-CCCCEE
Q 038076 280 WMHNSAIRALSEA-FPGKVS 298 (345)
Q Consensus 280 ~~~~~~~~~l~~~-F~~~v~ 298 (345)
.+.+.++..|+++ |. .|.
T Consensus 256 d~~~gVa~RLr~vGF~-~v~ 274 (287)
T COG2521 256 DLPKGVAERLRRVGFE-VVK 274 (287)
T ss_pred ChhHHHHHHHHhcCce-eee
Confidence 5788999999998 55 444
No 27
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=4.6e-11 Score=110.61 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=110.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC-Ccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS-GRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~-~~y 217 (345)
...++||+||+|.|.++..+.++.+..+|++|||++++.+.|++...++.+ ..|++++++|.-+|.+... .+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l------~~ri~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL------EERIQVIEADIKEFLKALVFASF 116 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc------hhceeEehhhHHHhhhccccccc
Confidence 457899999999999999999987889999999999999999999988764 6899999999999987644 459
Q ss_pred cEEEEcCCC--CCCC--C----------CCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 218 AGIVVDLFS--EGKV--L----------PQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 218 D~Ii~D~f~--~~~~--p----------~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
|+|++..+- .+.. + ..+.-.++++.+++.|+|||.+.+-.. .. -+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r--~e------------------rl~ 176 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR--PE------------------RLA 176 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec--HH------------------HHH
Confidence 999997522 1111 1 113346788899999999999965433 32 256
Q ss_pred HHHHHHHH-HCCCCEEEEEecC-CCCceEEEEeC
Q 038076 284 SAIRALSE-AFPGKVSWKRMPE-RNGENFLALTG 315 (345)
Q Consensus 284 ~~~~~l~~-~F~~~v~~~~~~~-~~~~n~v~~a~ 315 (345)
.++..|++ -|...-..+..|. ....|.+++..
T Consensus 177 ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~ 210 (248)
T COG4123 177 EIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEA 210 (248)
T ss_pred HHHHHHHhcCCCceEEEEecCCCCCcceEEEEEE
Confidence 77888887 4552222222232 23456666653
No 28
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.31 E-value=1.2e-11 Score=106.42 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=84.9
Q ss_pred CCCCEEEEeecccHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLML-DLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~y 217 (345)
+..+||++|||+|.++..+. +..|+.++++||+++++++.|++.+.-.. -++++++++|..+ +... +++|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~-------~~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG-------LDNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT-------STTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc-------ccccceEEeehhc-cccccCCCe
Confidence 46789999999999999999 55788999999999999999999764222 2379999999999 5421 2799
Q ss_pred cEEEEcCCCCCCCCCCcc-hHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLE-EVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~-t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++.... .++. ..++++.+.+.|+++|++++....
T Consensus 75 D~I~~~~~l-----~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVL-----HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTG-----GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCch-----hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999987433 1222 247899999999999999887765
No 29
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=2.4e-11 Score=115.53 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=102.9
Q ss_pred CCCCEEEEeeccc-HHHHH-HHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGG-TAAHL-MLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G-~~~~~-l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+|++|++||||.| ..+.. +.+++|+.+++++|+||++++.||+++.- .+. .++++++.+|+.+... ..++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL------~~rV~F~~~Da~~~~~-~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL------SKRMFFHTADVMDVTE-SLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc------cCCcEEEECchhhccc-ccCC
Confidence 7899999999966 33333 33567999999999999999999999842 332 5789999999998532 2478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH-HHHHHHHHHHCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH-NSAIRALSEAFPG 295 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~-~~~~~~l~~~F~~ 295 (345)
||+|++++--... .-.-.+.++.+.+.|+|||++++-...... .++ ..+...--+-|.
T Consensus 196 FDlVF~~ALi~~d---k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r-----------------~~LYp~v~~~~~~gf~- 254 (296)
T PLN03075 196 YDVVFLAALVGMD---KEEKVKVIEHLGKHMAPGALLMLRSAHGAR-----------------AFLYPVVDPCDLRGFE- 254 (296)
T ss_pred cCEEEEecccccc---cccHHHHHHHHHHhcCCCcEEEEecccchH-----------------hhcCCCCChhhCCCeE-
Confidence 9999998532211 113468999999999999999976632111 111 111111122444
Q ss_pred CEEEEEecCCCCceEEEEeCCCC
Q 038076 296 KVSWKRMPERNGENFLALTGLLP 318 (345)
Q Consensus 296 ~v~~~~~~~~~~~n~v~~a~~~p 318 (345)
++..--|.++-.|.++++.+..
T Consensus 255 -~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 255 -VLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred -EEEEECCCCCceeeEEEEEeec
Confidence 4444457767788888887754
No 30
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.29 E-value=2e-11 Score=109.64 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=89.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~y 217 (345)
+..++|+||||+|.++..+++.+|+.++++||+++.+++.|++...... -++++++.+|+.+++.. .+..+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~-------l~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG-------LKNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC-------CCCEEEEccCHHHHHHhhCCCCce
Confidence 4568999999999999999998999999999999999999988764222 24799999999886533 24589
Q ss_pred cEEEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|.|+++..+++.- ...+...++++.+.+.|+|||.+.+...
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999976554321 1224557899999999999999987653
No 31
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.29 E-value=6.1e-11 Score=116.75 Aligned_cols=111 Identities=15% Similarity=0.133 Sum_probs=85.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
.++||+||||+|.++..+.+.+|+.+|++||+++.+++.|++.+..... ....+++++.+|+.+.+ .+++||+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~----~~~~~v~~~~~D~l~~~--~~~~fDlI 302 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP----EALDRCEFMINNALSGV--EPFRFNAV 302 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc----ccCceEEEEEccccccC--CCCCEEEE
Confidence 4689999999999999999999999999999999999999988743211 01247899999997754 34689999
Q ss_pred EEcCCCC-CCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 221 VVDLFSE-GKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 221 i~D~f~~-~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+++.+-. ......-...+++..++++|+|||.+.+-.
T Consensus 303 lsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 303 LCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9974322 111111134678999999999999987664
No 32
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.29 E-value=5.1e-11 Score=113.34 Aligned_cols=112 Identities=18% Similarity=0.169 Sum_probs=86.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+..|+.+|+++|+|+.+++.|+++...... ..+++++.+|..+.+. +++||+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~------~~~i~~~~~D~~~~~~--~~~fD~ 192 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL------EDRVTLIQSDLFAALP--GRKYDL 192 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECchhhccC--CCCccE
Confidence 45789999999999999999988889999999999999999998753321 3579999999987652 458999
Q ss_pred EEEcCCCCCC-----CCCC--------c--------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGK-----VLPQ--------L--------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~-----~p~~--------l--------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++|.+-... .+.. + ....+++.+.+.|+|||.+++.+..
T Consensus 193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9998532110 1100 0 1256788889999999999988773
No 33
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.28 E-value=1.9e-11 Score=95.07 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=74.7
Q ss_pred EEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcC
Q 038076 145 AIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDL 224 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~ 224 (345)
|+||||+|..+..+.++ +..+++++|+++++++.+++... ..+++++.+|+.++ .-.+++||+|++-.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~----------~~~~~~~~~d~~~l-~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK----------NEGVSFRQGDAEDL-PFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT----------TSTEEEEESBTTSS-SS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc----------ccCchheeehHHhC-cccccccccccccc
Confidence 79999999999999987 78999999999999999999875 24567999999886 55689999998732
Q ss_pred CCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 225 FSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 225 f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.-. .. -.-.++++++++.|||||.+++
T Consensus 69 ~~~-~~---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 VLH-HL---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HGG-GS---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cee-ec---cCHHHHHHHHHHHcCcCeEEeC
Confidence 111 11 1346799999999999999975
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.28 E-value=3.1e-11 Score=112.67 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.+++.+.+..|+.+|+++|++|.+++.|++. +++++.+|+.++. ...+||
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------------~~~~~~~d~~~~~--~~~~fD 91 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------------GVDARTGDVRDWK--PKPDTD 91 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------------CCcEEEcChhhCC--CCCCce
Confidence 456899999999999999999888889999999999999999762 3678899998763 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .++. ..++++++++.|+|||.++++++.
T Consensus 92 ~v~~~~~l~-~~~d---~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 92 VVVSNAALQ-WVPE---HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred EEEEehhhh-hCCC---HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 999854322 2222 267899999999999999998754
No 35
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=1.3e-11 Score=115.03 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=89.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---- 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---- 213 (345)
.++++||+||.+.|..+.++.+.. ++.+|+.+|+||+..+.|+++|...+. ..+++++.||+.+.|...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~------~~~I~~~~G~a~e~L~~l~~~~ 151 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV------AHKIDFREGPALPVLDQMIEDG 151 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCceEEEeccHHHHHHHHHhcc
Confidence 478999999999999999888764 468999999999999999999965442 479999999999988652
Q ss_pred --CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 214 --SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 214 --~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
.++||+||+|+....+ .++|+.+.++|+|||++++.
T Consensus 152 ~~~~~fD~iFiDadK~~Y-------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 152 KYHGTFDFIFVDADKDNY-------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccCCcccEEEecCCHHHh-------HHHHHHHHHhcCCCeEEEEc
Confidence 3689999999865432 57899999999999999873
No 36
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=1e-10 Score=108.03 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=94.0
Q ss_pred HhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc
Q 038076 132 FVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 132 ~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
+...+...++.+||++|||+|-++..+.+..+..+|+++|+++.|++.|++...-... ..++++++||.+ |.
T Consensus 43 ~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-------~~i~fv~~dAe~-LP 114 (238)
T COG2226 43 LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV-------QNVEFVVGDAEN-LP 114 (238)
T ss_pred HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc-------cceEEEEechhh-CC
Confidence 3334433478999999999999999999988889999999999999999998863321 229999999988 45
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-++.+||++.+. |.-..++ .-...+++++|.|+|||.+++.=.+...
T Consensus 115 f~D~sFD~vt~~-fglrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 115 FPDNSFDAVTIS-FGLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCCccCEEEee-ehhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 789999999984 2222232 2357899999999999998877665554
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.26 E-value=2.8e-11 Score=108.74 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+.+|.+||||.|..+..|.+++|+..|+++|-||+|++.|++.. |++++..+|.++| ..+...|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------------p~~~f~~aDl~~w--~p~~~~d 94 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------------PDATFEEADLRTW--KPEQPTD 94 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------------CCCceecccHhhc--CCCCccc
Confidence 4678999999999999999999999999999999999999998865 4688999999999 3567899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|+..+--. .+|.| .+.|..+...|+|||++++++...-.
T Consensus 95 llfaNAvlq-WlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 95 LLFANAVLQ-WLPDH---PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhh-hcccc---HHHHHHHHHhhCCCceEEEECCCccC
Confidence 999866443 24555 47889999999999999999886654
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.26 E-value=9.4e-11 Score=109.36 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=84.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||+|.++..+.+..|+.+|++||+++.+++.|++.+ ++++++.+|+.++. ...+||
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------------~~~~~~~~d~~~~~--~~~~fD 95 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------------PDCQFVEADIASWQ--PPQALD 95 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------------CCCeEEECchhccC--CCCCcc
Confidence 4568999999999999999998888899999999999999999875 24788999998874 346899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++...-. .++ ....+++++.+.|+|||.+++.+..
T Consensus 96 ~v~~~~~l~-~~~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 96 LIFANASLQ-WLP---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred EEEEccChh-hCC---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999864332 222 2357999999999999999987643
No 39
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.25 E-value=2e-10 Score=101.67 Aligned_cols=109 Identities=20% Similarity=0.128 Sum_probs=91.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+...+++||||+|+++.++....|..+|+++|-|++.++..+++..-- .-++++++.|||-+.|.+.+ ++
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f-------g~~n~~vv~g~Ap~~L~~~~-~~ 103 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF-------GVDNLEVVEGDAPEALPDLP-SP 103 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh-------CCCcEEEEeccchHhhcCCC-CC
Confidence 35667899999999999999998889999999999999999988765311 14689999999999998655 89
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.||+..- . .-.+.++.+..+|+|||.+++|....+.
T Consensus 104 daiFIGGg--~------~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 104 DAIFIGGG--G------NIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred CEEEECCC--C------CHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999532 1 2357899999999999999999997664
No 40
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.22 E-value=1.6e-10 Score=103.65 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=85.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..+.+..|+.+|++||+||++++.+++++.... -++++++.+|+.+.+......+|
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~-------~~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG-------VKNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCCeEEEECchHHHHhhCCCCCC
Confidence 45678999999999999998877788999999999999999998874221 24699999999775444345678
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.|++|... .-.++++.+.+.|+|||.++++....
T Consensus 112 ~v~~~~~~--------~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 112 RVCIEGGR--------PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred EEEEECCc--------CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 88886421 12678999999999999999987643
No 41
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.22 E-value=1.1e-10 Score=105.13 Aligned_cols=107 Identities=15% Similarity=0.029 Sum_probs=84.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|.++..+++.. +..+|+++|+++.+++.|++.+..... ..+++++.+|+.+++.....+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~------~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV------LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCCeEEEEechhhhHhhcCCCC
Confidence 456789999999999999887653 568999999999999999987642211 2578999999988776555789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|.|+++.... .-.++++.+.+.|+|||.+++...
T Consensus 113 D~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 113 DRIFIGGGSE-------KLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CEEEECCCcc-------cHHHHHHHHHHHcCCCcEEEEEee
Confidence 9999854211 225789999999999999987655
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.21 E-value=1.9e-10 Score=104.25 Aligned_cols=103 Identities=20% Similarity=0.127 Sum_probs=80.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+||||+|..+..+.+..+ ..+|+++|++|++++.|++++.... ...+++++.+|+.+.+. ...+|
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~------~~~~v~~~~~d~~~~~~-~~~~f 143 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG------YWGVVEVYHGDGKRGLE-KHAPF 143 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEECCcccCCc-cCCCc
Confidence 4567999999999999988887654 5799999999999999998875322 13469999999988654 35689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|+++.... . +-+.+.+.|+|||.+++.+.
T Consensus 144 D~Ii~~~~~~-~---------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 144 DAIIVTAAAS-T---------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cEEEEccCcc-h---------hhHHHHHhcCcCcEEEEEEc
Confidence 9999975332 1 22457788999999998764
No 43
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.21 E-value=2.8e-10 Score=110.94 Aligned_cols=107 Identities=15% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..+||+||||+|.++..+.+..|+.+|+++|+|+.+++.|++.+.... -..+++.+|+.+.+ +++||+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~--------l~~~~~~~D~~~~~---~~~fDlI 265 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG--------LEGEVFASNVFSDI---KGRFDMI 265 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------CCCEEEEccccccc---CCCccEE
Confidence 468999999999999999998898999999999999999999876432 23577888887653 5789999
Q ss_pred EEcCCCCCCCCC-CcchHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGKVLP-QLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~~p~-~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++..-+..... .-...++++.+.++|+|||.+.+-..
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 997533221111 11347899999999999999865443
No 44
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.21 E-value=2.1e-10 Score=105.06 Aligned_cols=108 Identities=8% Similarity=0.051 Sum_probs=83.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+.+.. |..+|+++|++|.+++.|++.+.... -++++++.+|+.++. ..+++|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~-~~~~~f 115 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG-------LHNVELVHGNAMELP-FDDNSF 115 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC-------CCceEEEEechhcCC-CCCCCc
Confidence 456799999999999999998764 56899999999999999998874221 357999999998752 346789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|+++..-. ..+ ...++++++.+.|+|||.+++--.
T Consensus 116 D~V~~~~~l~-~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLR-NVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccc-cCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999863221 222 235789999999999999886433
No 45
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.20 E-value=1.9e-11 Score=97.85 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=72.9
Q ss_pred EEEEeecccHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 144 IAIYGLGGGTAAHLMLDLW---PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
||++|||+|..++.+.+.+ |..++++||+|+++++.+++++... ..+++++++|+.++ ....++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~--------~~~~~~~~~D~~~l-~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED--------GPKVRFVQADARDL-PFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT--------TTTSEEEESCTTCH-HHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc--------CCceEEEECCHhHC-cccCCCeeEE
Confidence 7999999999999999876 4589999999999999999988522 35799999999885 4457799999
Q ss_pred EE-cC-CCCCCCCCCcchHHHHHHHHhccCCCc
Q 038076 221 VV-DL-FSEGKVLPQLEEVATWLKLKDRLMPNG 251 (345)
Q Consensus 221 i~-D~-f~~~~~p~~l~t~ef~~~~~~~L~pgG 251 (345)
++ .. +. +. ..-....+++.+.++|+|||
T Consensus 72 ~~~~~~~~--~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLH--HL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGG--GS-SHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccC--CC-CHHHHHHHHHHHHHHhCCCC
Confidence 98 22 11 11 11134678999999999998
No 46
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.20 E-value=7e-11 Score=110.03 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=81.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+++. .|+.++++||++|.|++.|++.+.... ...+++++.+|+.+.. ...
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~------~~~~v~~~~~d~~~~~---~~~ 125 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK------APTPVDVIEGDIRDIA---IEN 125 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEeCChhhCC---CCC
Confidence 45678999999999999888773 578999999999999999999875322 1357999999988752 346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|+|++..... .+++ -....+++++++.|+|||.+++.
T Consensus 126 ~D~vv~~~~l~-~l~~-~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 126 ASMVVLNFTLQ-FLEP-SERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred CCEEehhhHHH-hCCH-HHHHHHHHHHHHhcCCCCEEEEE
Confidence 99988642111 1111 12357899999999999998875
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=7.5e-11 Score=110.18 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=85.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+..+.+. +.+|+++|+++++++.|+++..... ..++++++.+|+.+.....+++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g------~~~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKG------VSDNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC------CccceEEEEcCHHHHhhhcCCCCC
Confidence 35679999999999999999875 5799999999999999999875322 146799999999886434567899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|++...-. .+. ...++++.+.+.|+|||.+++-.++.
T Consensus 115 ~V~~~~vl~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 115 LILFHAVLE-WVA---DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred EEEehhHHH-hhC---CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 999743211 111 12478999999999999998765554
No 48
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.19 E-value=3.8e-10 Score=106.04 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=85.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|.++..+.+.. |..+|++||++++|++.|++....... ...++++++.+|+.+. .-.+++|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~----~~~~~i~~~~~d~~~l-p~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK----SCYKNIEWIEGDATDL-PFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh----ccCCCeEEEEcccccC-CCCCCCE
Confidence 456799999999999998888764 567999999999999999876532110 1135799999999874 3356789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++...-. ..+ ...++++++.+.|+|||.+++--+..+
T Consensus 147 D~V~~~~~l~-~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 147 DAITMGYGLR-NVV---DRLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred eEEEEecccc-cCC---CHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 9998742111 222 236799999999999999887666544
No 49
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.19 E-value=1.9e-10 Score=104.89 Aligned_cols=104 Identities=20% Similarity=0.151 Sum_probs=81.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..+..+||+||||+|..+..+.+..+ ..+|++||++|++++.|++++.... -.+++++.+|+.+... ...+
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g-------~~~v~~~~~d~~~~~~-~~~~ 146 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG-------LDNVIVIVGDGTQGWE-PLAP 146 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC-------CCCeEEEECCcccCCc-ccCC
Confidence 35678999999999999999888754 4689999999999999999885332 2479999999987643 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|+++.... . ..+.+.+.|+|||.+++.+..
T Consensus 147 fD~Ii~~~~~~-~---------~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 147 YDRIYVTAAGP-K---------IPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCEEEEcCCcc-c---------ccHHHHHhcCcCcEEEEEEcC
Confidence 99999975321 1 124567889999999988764
No 50
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.19 E-value=6.8e-11 Score=109.38 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++|||+|.++..+.+.. |..+|+++|+++.|++.|++...-.. ..+++++++|+.+. .-.+++|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~-------~~~i~~v~~da~~l-p~~d~sf 117 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG-------LQNIEFVQGDAEDL-PFPDNSF 117 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---------SEEEEE-BTTB---S-TT-E
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC-------CCCeeEEEcCHHHh-cCCCCce
Confidence 457899999999999999988764 56899999999999999998874222 24899999999884 4567999
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++-. .-..++ .-...++++.|.|+|||.+++--.+.+
T Consensus 118 D~v~~~f-glrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 118 DAVTCSF-GLRNFP---DRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp EEEEEES--GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred eEEEHHh-hHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 9999732 211222 235789999999999999876544444
No 51
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=1.8e-10 Score=110.82 Aligned_cols=110 Identities=17% Similarity=0.144 Sum_probs=85.5
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||++|||+|.++..+.+.+|+.+|+++|+||.+++.|+++...... ..+++++.+|..+.+. +++||+|+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l------~~~i~~~~~D~~~~l~--~~~fDlIv 206 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL------EDRVTLIESDLFAALP--GRRYDLIV 206 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCcEEEEECchhhhCC--CCCccEEE
Confidence 689999999999999999888999999999999999999998753321 3579999999987653 45899999
Q ss_pred EcCCCCCC-----C-------CC-Cc--------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 222 VDLFSEGK-----V-------LP-QL--------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 222 ~D~f~~~~-----~-------p~-~l--------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
++.+-... . |. .+ ....+++.+.+.|+|||.+++.+..
T Consensus 207 sNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 207 SNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 97522110 0 10 01 1256788899999999999987663
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.18 E-value=1.2e-09 Score=96.55 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=83.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||++|||+|.++..+.+..+ +|+++|++|++++.+++++... +.+++++.+|..+.. .++||
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~d~~~~~---~~~fD 84 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN--------NVGLDVVMTDLFKGV---RGKFD 84 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc--------CCceEEEEccccccc---CCccc
Confidence 3467899999999999999887644 8999999999999999987532 236889999987753 45899
Q ss_pred EEEEcCCCCCCCC----C-------------CcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVL----P-------------QLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p----~-------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+++..-..... . .....++++.+.+.|+|||.+++......
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 9998753311100 0 00135789999999999999988765444
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.18 E-value=1.2e-10 Score=112.61 Aligned_cols=108 Identities=11% Similarity=0.111 Sum_probs=83.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|.++..+.+ ++.+|++||+++++++.|+++..... ...+++++++|+.++. ..+++||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~------~~~~i~~~~~dae~l~-~~~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDP------VTSTIEYLCTTAEKLA-DEGRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcC------cccceeEEecCHHHhh-hccCCCCE
Confidence 346899999999999988875 46899999999999999999875332 1357999999987753 34678999
Q ss_pred EEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++- +.. +++ ...++++.+++.|+|||.+++......
T Consensus 202 Vi~~~vLe--Hv~---d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 202 VLSLEVIE--HVA---NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEEhhHHH--hcC---CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9972 111 122 235799999999999999998876543
No 54
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.17 E-value=6.2e-11 Score=108.48 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=82.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|.++..+++. +.+|+++|+++..++.|+.+-.... -.+.+......+.. ...++||+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~g--------v~i~y~~~~~edl~-~~~~~FDv 127 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESG--------VNIDYRQATVEDLA-SAGGQFDV 127 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcc--------ccccchhhhHHHHH-hcCCCccE
Confidence 4689999999999999999875 5999999999999999999875332 12445555655543 34589999
Q ss_pred EEEcCCCCCCCCCCcch-HHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEE-VATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t-~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|- .+..|..+ ..|++.|.+++||||++++...+...
T Consensus 128 V~cm-----EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 128 VTCM-----EVLEHVPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred EEEh-----hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 9972 33344333 35899999999999999988877654
No 55
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=103.37 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=80.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+||+||||+|..+..+.+.. ++.+|++||++|++++.|++.+.... -.+++++.+|+..... ....
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g-------~~~v~~~~gd~~~~~~-~~~~ 145 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG-------YDNVEVIVGDGTLGYE-ENAP 145 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCCeEEEECCcccCCC-cCCC
Confidence 3567899999999999998888764 34799999999999999999885332 2479999999987543 3578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|+++.... . ..+.+.+.|+|||.+++....
T Consensus 146 fD~I~~~~~~~-~---------~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 146 YDRIYVTAAGP-D---------IPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred cCEEEECCCcc-c---------chHHHHHhhCCCcEEEEEEcC
Confidence 99999975332 1 123566789999999987653
No 56
>PLN02244 tocopherol O-methyltransferase
Probab=99.17 E-value=2.8e-10 Score=110.96 Aligned_cols=109 Identities=10% Similarity=0.133 Sum_probs=84.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||.|.++..+.+.+ +.+|++||+++.+++.|++...... ..++++++.+|+.+. ...+++||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g------~~~~v~~~~~D~~~~-~~~~~~FD 188 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQG------LSDKVSFQVADALNQ-PFEDGQFD 188 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcC------CCCceEEEEcCcccC-CCCCCCcc
Confidence 356789999999999999998876 6899999999999999998764322 135799999999874 33568999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++-... .+++ ...++++++.+.|+|||.+++..+.
T Consensus 189 ~V~s~~~~-~h~~---d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 189 LVWSMESG-EHMP---DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EEEECCch-hccC---CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99973211 1222 2357999999999999999886554
No 57
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.15 E-value=4.5e-10 Score=103.80 Aligned_cols=109 Identities=15% Similarity=0.231 Sum_probs=82.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+||+||||+|..+..+.+. .|+.+++++|+++.|++.|++++.... ...+++++++|+.++- .+.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~------~~~~v~~~~~d~~~~~---~~~ 122 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH------SEIPVEILCNDIRHVE---IKN 122 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC------CCCCeEEEECChhhCC---CCC
Confidence 35678999999999999988876 378999999999999999999874221 1357999999998862 346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+|++...-+ ..++ -...++++++++.|+|||.+++.-.
T Consensus 123 ~d~v~~~~~l~-~~~~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 123 ASMVILNFTLQ-FLPP-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred CCEEeeecchh-hCCH-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 89887633211 1111 1235799999999999999987643
No 58
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=1.9e-09 Score=99.30 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=94.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~~~ 216 (345)
.+..+||++|||+|.++..+.+..+..+|+++|+++.|++.+.+.... .+++..+.+|+.... ....++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~---------~~nv~~i~~D~~~~~~~~~l~~~ 141 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE---------RKNIIPILADARKPERYAHVVEK 141 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh---------cCCcEEEECCCCCcchhhhcccc
Confidence 456799999999999999999877667999999999999877665431 246889999987521 112456
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FPG 295 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~~ 295 (345)
||+|++|...+. ....+++++++.|+|||.+++.+.....+ |.. +.....+..++.++++ |.
T Consensus 142 ~D~i~~d~~~p~------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-------~~~---~~~~~~~~~~~~l~~aGF~- 204 (226)
T PRK04266 142 VDVIYQDVAQPN------QAEIAIDNAEFFLKDGGYLLLAIKARSID-------VTK---DPKEIFKEEIRKLEEGGFE- 204 (226)
T ss_pred CCEEEECCCChh------HHHHHHHHHHHhcCCCcEEEEEEeccccc-------CcC---CHHHHHHHHHHHHHHcCCe-
Confidence 999999854311 12346889999999999999865532210 000 0113345666777776 66
Q ss_pred CEEEEEe
Q 038076 296 KVSWKRM 302 (345)
Q Consensus 296 ~v~~~~~ 302 (345)
.+.+...
T Consensus 205 ~i~~~~l 211 (226)
T PRK04266 205 ILEVVDL 211 (226)
T ss_pred EEEEEcC
Confidence 4554444
No 59
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.3e-10 Score=104.48 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=100.7
Q ss_pred cCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+|++.|.|+|.++.+|+.. .|..+|+.+|++++..+.|++++..... +.++++..+|.++... ++.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l------~d~v~~~~~Dv~~~~~--~~~ 163 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL------GDRVTLKLGDVREGID--EED 163 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc------ccceEEEecccccccc--ccc
Confidence 356789999999999999999975 5669999999999999999999854332 4569999999999864 349
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
||+|++|..+++ ++++.+++.|+|||.+++-+...+ ..+..+..|++. |-
T Consensus 164 vDav~LDmp~PW---------~~le~~~~~Lkpgg~~~~y~P~ve-------------------Qv~kt~~~l~~~g~~ 214 (256)
T COG2519 164 VDAVFLDLPDPW---------NVLEHVSDALKPGGVVVVYSPTVE-------------------QVEKTVEALRERGFV 214 (256)
T ss_pred cCEEEEcCCChH---------HHHHHHHHHhCCCcEEEEEcCCHH-------------------HHHHHHHHHHhcCcc
Confidence 999999987764 689999999999999998777555 367788888887 55
No 60
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.14 E-value=2e-09 Score=101.08 Aligned_cols=111 Identities=20% Similarity=0.225 Sum_probs=85.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+..|..+++++|+++.+++.|++++... ...+++++.+|..+.+. .++||
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~-------~~~~i~~~~~d~~~~~~--~~~fD 177 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG-------LGARVEFLQGDWFEPLP--GGRFD 177 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC-------CCCcEEEEEccccCcCC--CCcee
Confidence 4567899999999999999999888899999999999999999987611 14579999999866542 47899
Q ss_pred EEEEcCCCCCC-----CCCC---------cc--------hHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGK-----VLPQ---------LE--------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~-----~p~~---------l~--------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.+-... .... ++ -..+++.+.+.|+|||.+++.+.
T Consensus 178 ~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 178 LIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 99997532110 0000 11 14577788899999999998664
No 61
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.1e-10 Score=102.38 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=84.1
Q ss_pred hccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 134 SLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 134 ~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
.+..+.+..+||+||+|+|..+..+.+.- .+|..||+++++.+.|++++..-+ -.+++++++|+..-.. .
T Consensus 66 ~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg-------~~nV~v~~gDG~~G~~-~ 135 (209)
T COG2518 66 QLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLG-------YENVTVRHGDGSKGWP-E 135 (209)
T ss_pred HHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcC-------CCceEEEECCcccCCC-C
Confidence 44445678999999999999998888763 399999999999999999885333 3459999999998764 4
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
...||.|++.+-.+ .+|..| .+.|+|||++++-+.
T Consensus 136 ~aPyD~I~Vtaaa~-~vP~~L---------l~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAP-EVPEAL---------LDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccC-CCCHHH---------HHhcccCCEEEEEEc
Confidence 68999999976443 455433 467999999999888
No 62
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.13 E-value=1.3e-11 Score=98.26 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=59.5
Q ss_pred EEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEc
Q 038076 145 AIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVD 223 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D 223 (345)
|+||||+|.++..+++.+|..+++++|++|.+++.|++.+.... ..+......+..+.... ..++||+|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG-------NDNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------CcceeEEEeecCChhhcccccccceehhh
Confidence 79999999999999999999999999999999988888775322 12233333333333222 23699999973
Q ss_pred CCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
..-. .. -...++++.+++.|+|||++
T Consensus 74 ~vl~-~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLH-HL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHh-hh---hhHHHHHHHHHHHcCCCCCC
Confidence 2111 11 13458999999999999986
No 63
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=1.4e-09 Score=96.90 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=91.2
Q ss_pred ccccCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc---
Q 038076 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--- 210 (345)
Q Consensus 135 l~~~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--- 210 (345)
...+.+..+||+||||+|.++..+.+.. +..+|+++|++|.+ . .++++++.+|..+.-
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----------~~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----------IENVDFIRGDFTDEEVLN 88 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----------CCCceEEEeeCCChhHHH
Confidence 3444567899999999999999888765 55799999999964 1 135788888886531
Q ss_pred ---c-cCCCcccEEEEcCCCCC-CC--CCCcc----hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 211 ---E-DASGRYAGIVVDLFSEG-KV--LPQLE----EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 211 ---~-~~~~~yD~Ii~D~f~~~-~~--p~~l~----t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
+ ...++||+|++|...+. .. ..++. ..++++.+.+.|+|||.+++.......
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~----------------- 151 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE----------------- 151 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc-----------------
Confidence 0 13568999999863210 11 11111 257899999999999999987654332
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEec
Q 038076 280 WMHNSAIRALSEAFPGKVSWKRMP 303 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~v~~~~~~ 303 (345)
...++..+++.|. .+.+++..
T Consensus 152 --~~~~l~~l~~~~~-~~~~~~~~ 172 (188)
T TIGR00438 152 --IDEYLNELRKLFE-KVKVTKPQ 172 (188)
T ss_pred --HHHHHHHHHhhhc-eEEEeCCC
Confidence 4567788888886 55555443
No 64
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.5e-09 Score=102.76 Aligned_cols=125 Identities=15% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..+||++|||-|.++..+++..|..+++.||+|...++.||+....+.. .+..++..|..+-+ .++||.|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~-------~~~~v~~s~~~~~v---~~kfd~I 228 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV-------ENTEVWASNLYEPV---EGKFDLI 228 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC-------CccEEEEecccccc---cccccEE
Confidence 4599999999999999999999999999999999999999998865432 22278888887754 3499999
Q ss_pred EEcCCCCCCC-CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE
Q 038076 221 VVDLFSEGKV-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 221 i~D~f~~~~~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~ 298 (345)
++..+-+... ..+-...+++...+++|++||-+-+-..... .....|++.|. .+.
T Consensus 229 isNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l----------------------~y~~~L~~~Fg-~v~ 284 (300)
T COG2813 229 ISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHL----------------------PYEKKLKELFG-NVE 284 (300)
T ss_pred EeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCC----------------------ChHHHHHHhcC-CEE
Confidence 9965443221 1222345899999999999998654433222 23446899999 455
No 65
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.11 E-value=4.1e-10 Score=102.65 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=82.2
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
++||+||||.|..+..+.+.+|+.+++++|+++++++.|++.+.... ..++++++.+|..+.. .+++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g------l~~~i~~~~~d~~~~~--~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG------LQGRIRIFYRDSAKDP--FPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC------CCcceEEEecccccCC--CCCCCCEee
Confidence 47999999999999999988888999999999999999999875332 2468999999986542 246899998
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+..... .++ ...++++++++.|+|||.+++...
T Consensus 73 ~~~~l~-~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 73 GFEVIH-HIK---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred hHHHHH-hCC---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 632111 121 236899999999999999987654
No 66
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.11 E-value=9.5e-10 Score=101.62 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+.+||++|||+|..+..+.+..|..+++++|+++.+++.|++...... -++++++.+|+.+.+ ..++||+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~--~~~~fD~ 157 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLG-------LDNVTFLQSDWFEPL--PGGKFDL 157 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCeEEEEECchhccC--cCCceeE
Confidence 4568999999999999999998888999999999999999998875332 236999999998754 3578999
Q ss_pred EEEcCCCCCC-----CCCCcc-----------------hHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGK-----VLPQLE-----------------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~-----~p~~l~-----------------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+++..-... ...... -..+++.+.+.|+|||.+++...
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 9997532210 111100 13678899999999999998764
No 67
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=7.3e-10 Score=104.45 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=110.1
Q ss_pred CeEEEEEcCcCceEEEEecCCCc-ccchHH---HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHH
Q 038076 101 KSRMLLLDSTYNVHSIINKGIHK-WTGSYW---DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEIL 176 (345)
Q Consensus 101 ~~r~L~ld~~~~~~~~~~~~p~~-l~~~Y~---~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~v 176 (345)
....|.+|.....++.+++++.. +...=. +.......+.+..+||+||||-|.++.++.+.+ +.+|++|.++++.
T Consensus 29 ~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q 107 (283)
T COG2230 29 DFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQ 107 (283)
T ss_pred HHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHH
Confidence 35668899888778888888752 322111 222222334678999999999999999999988 7999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 177 IDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 177 i~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+.+++.+...++ ..+++++..|-+++ .++||-|+. ..|..-+ .-.-..||+.+++.|+|||.++.
T Consensus 108 ~~~~~~r~~~~gl------~~~v~v~l~d~rd~----~e~fDrIvSvgmfEhvg---~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 108 LAYAEKRIAARGL------EDNVEVRLQDYRDF----EEPFDRIVSVGMFEHVG---KENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred HHHHHHHHHHcCC------CcccEEEecccccc----ccccceeeehhhHHHhC---cccHHHHHHHHHhhcCCCceEEE
Confidence 9999997754442 35899999999886 455999985 3333211 11236899999999999999988
Q ss_pred EecCCCC
Q 038076 256 NCGGIDG 262 (345)
Q Consensus 256 n~~~~~~ 262 (345)
.......
T Consensus 175 h~I~~~~ 181 (283)
T COG2230 175 HSITGPD 181 (283)
T ss_pred EEecCCC
Confidence 8776554
No 68
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.10 E-value=5.1e-10 Score=105.92 Aligned_cols=111 Identities=20% Similarity=0.286 Sum_probs=78.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||-|.++.++.+.+ +++|++|.++++-.+.|++...-.++ ..++++..+|.+++ +.+|
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl------~~~v~v~~~D~~~~----~~~f 128 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL------EDRVEVRLQDYRDL----PGKF 128 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS------SSTEEEEES-GGG-------S-
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC------CCceEEEEeecccc----CCCC
Confidence 4577899999999999999999887 79999999999999999988854432 46899999998875 3499
Q ss_pred cEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|+. ..+.. +. +-.-..||+.+.+.|+|||.+++..+....
T Consensus 129 D~IvSi~~~Eh--vg-~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 129 DRIVSIEMFEH--VG-RKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp SEEEEESEGGG--TC-GGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CEEEEEechhh--cC-hhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 99985 22221 11 113468999999999999999988765543
No 69
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.09 E-value=1.3e-09 Score=99.10 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=90.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--c----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--E---- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~---- 211 (345)
.+..+||+||||+|..+..+.+.. +..+|++||++|. .+ .++++++++|+.+.- +
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~-------~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP-------IVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC-------CCCcEEEecCCCChHHHHHHHH
Confidence 456789999999999999998875 4579999999991 11 245899999998741 1
Q ss_pred -cCCCcccEEEEcCCCCC-CCCC--Cc----chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 212 -DASGRYAGIVVDLFSEG-KVLP--QL----EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 212 -~~~~~yD~Ii~D~f~~~-~~p~--~l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
...++||+|++|..... ..+. .. ...++++.+.+.|+|||.+++-++..+. +.
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~-------------------~~ 172 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG-------------------FD 172 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC-------------------HH
Confidence 13678999999863211 1110 00 1246889999999999999998776554 55
Q ss_pred HHHHHHHHHCCCCEEEEE
Q 038076 284 SAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 284 ~~~~~l~~~F~~~v~~~~ 301 (345)
.++..+++.|. .+.+++
T Consensus 173 ~~l~~l~~~f~-~v~~~K 189 (209)
T PRK11188 173 EYLREIRSLFT-KVKVRK 189 (209)
T ss_pred HHHHHHHhCce-EEEEEC
Confidence 67788999999 666543
No 70
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.09 E-value=1.3e-09 Score=102.59 Aligned_cols=109 Identities=14% Similarity=0.169 Sum_probs=83.9
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+..+||+||||.|..+..+.+.+ +.+|+++|++|.+++.|++.+.. .++++++.+|+.+. ...+++|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~---------~~~i~~~~~D~~~~-~~~~~~F 118 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD---------KNKIEFEANDILKK-DFPENTF 118 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc---------CCceEEEECCcccC-CCCCCCe
Confidence 3566899999999999998887654 57999999999999999998742 35799999998753 2246789
Q ss_pred cEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 218 AGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 218 D~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|+|++ +.+.. .+. -....+++++++.|+|||.+++.-+..
T Consensus 119 D~V~s~~~l~h--~~~-~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 119 DMIYSRDAILH--LSY-ADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEEhhhHHh--CCH-HHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99997 43322 111 123579999999999999999875543
No 71
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.09 E-value=8.6e-10 Score=100.50 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|..+..+.+..|..+++++|+++++++.+++.+. ++++++.+|..+.. ..+++||+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----------~~~~~~~~d~~~~~-~~~~~fD~ 101 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----------ENVQFICGDAEKLP-LEDSSFDL 101 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----------CCCeEEecchhhCC-CCCCceeE
Confidence 4578999999999999999998888899999999999999998764 36788999988753 24678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++..... ... ...++++.+++.|+|||.+++......
T Consensus 102 vi~~~~l~-~~~---~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 102 IVSNLALQ-WCD---DLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred EEEhhhhh-hcc---CHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 99864322 111 235789999999999999998876544
No 72
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.09 E-value=8.8e-10 Score=99.26 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=79.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||.|..+..+.+. +.+|+++|+++.+++.+++...... -.+++++.+|..++- .+++||
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~-------~~~v~~~~~d~~~~~--~~~~fD 97 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAEN-------LDNLHTAVVDLNNLT--FDGEYD 97 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcC-------CCcceEEecChhhCC--cCCCcC
Confidence 35689999999999999999874 5799999999999999998764322 235888899987652 246799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE-EEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM-VNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv-vn~~ 258 (345)
+|++-..-. ..+. -....+++.+++.|+|||.++ +...
T Consensus 98 ~I~~~~~~~-~~~~-~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 98 FILSTVVLM-FLEA-KTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred EEEEecchh-hCCH-HHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 999742211 1111 134679999999999999854 4443
No 73
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.09 E-value=1.3e-09 Score=101.97 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=82.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~ 219 (345)
+.+||++|||+|.++..+.+..++.+|++||+||.+++.|+++.... +++++.+|..+++.. ..++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~----------~~~~~~~D~~~~l~~~~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA----------GGTVHEGDLYDALPTALRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCEEEEeechhhcchhcCCCEeE
Confidence 45899999999999999998888889999999999999999987522 247899999887643 2357999
Q ss_pred EEEcCCCCCC-----CCCC---------c--------chHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGK-----VLPQ---------L--------EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~-----~p~~---------l--------~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++|.+-... .++. + .-.++++.+.+.|+|||.+++-..
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9998643210 1110 1 124677788899999999987655
No 74
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.08 E-value=1.3e-09 Score=103.83 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=88.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+.+. +..+|+++|+||.+++.|++++..... ..++.++.+|.... .+++||
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~------~~~~~~~~~~~~~~---~~~~fD 227 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQV------SDRLQVKLIYLEQP---IEGKAD 227 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCC------CcceEEEecccccc---cCCCce
Confidence 35689999999999999887764 557999999999999999998864432 34677777763332 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFP 294 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~ 294 (345)
+|+++.... .-.+++..+.+.|+|||.+++.-.... ....+.+.+++.|.
T Consensus 228 lVvan~~~~-------~l~~ll~~~~~~LkpgG~li~sgi~~~-------------------~~~~v~~~~~~~f~ 277 (288)
T TIGR00406 228 VIVANILAE-------VIKELYPQFSRLVKPGGWLILSGILET-------------------QAQSVCDAYEQGFT 277 (288)
T ss_pred EEEEecCHH-------HHHHHHHHHHHHcCCCcEEEEEeCcHh-------------------HHHHHHHHHHccCc
Confidence 999865321 124788999999999999987654322 24566666776665
No 75
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.07 E-value=1.5e-09 Score=103.16 Aligned_cols=111 Identities=17% Similarity=0.128 Sum_probs=85.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||++|||+|.++..+.+..|+.+|+++|+++.+++.|+++...... ..+++++.+|..+.+. ..+||+|+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~------~~~v~~~~~d~~~~~~--~~~fDlIv 187 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL------EHRVEFIQSNLFEPLA--GQKIDIIV 187 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CCcEEEEECchhccCc--CCCccEEE
Confidence 689999999999999999988889999999999999999998753221 3469999999887642 34899999
Q ss_pred EcCCCCCC-----CCCC--------c--------chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 222 VDLFSEGK-----VLPQ--------L--------EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 222 ~D~f~~~~-----~p~~--------l--------~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
++.+-... .+.. + .-..+++.+.+.|+|||.+++.+...
T Consensus 188 sNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 188 SNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred ECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 97422110 0000 0 23467788889999999999888743
No 76
>PRK14968 putative methyltransferase; Provisional
Probab=99.06 E-value=7.1e-09 Score=91.36 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++..+++. +.+++++|++|++++.+++.+..... .+.+++++++|..+.+. +++||
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~d~~~~~~--~~~~d 92 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNI-----RNNGVEVIRSDLFEPFR--GDKFD 92 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCC-----CCcceEEEecccccccc--ccCce
Confidence 45678999999999999999876 68999999999999999888754321 12238899999877543 34899
Q ss_pred EEEEcCCCCCCCCC-----------------CcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLP-----------------QLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~-----------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+|+++.......+. ......+++++.+.|+|||.+++.....
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 99986422110000 0113568999999999999988776543
No 77
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.06 E-value=3.5e-09 Score=98.47 Aligned_cols=103 Identities=12% Similarity=0.025 Sum_probs=79.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+. +.+++++|++|.+++.|++... ...++.+|+.+. ...+++||+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~------------~~~~~~~d~~~~-~~~~~~fD~ 106 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA------------ADHYLAGDIESL-PLATATFDL 106 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC------------CCCEEEcCcccC-cCCCCcEEE
Confidence 4678999999999999888763 5799999999999999998753 135788898774 334678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++...-.. .+ ...+++.++.+.|+|||.+++......
T Consensus 107 V~s~~~l~~-~~---d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 107 AWSNLAVQW-CG---NLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred EEECchhhh-cC---CHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 998543221 11 235789999999999999999876654
No 78
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=2.8e-09 Score=97.63 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=81.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|.++..+.+. +..+++++|+|+.+++.++++.... +.+++++.+|..+.+ .+++||
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~--------~~~~~~~~~d~~~~~--~~~~fD 103 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLA--------GVDVDVRRGDWARAV--EFRPFD 103 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHh--------CCeeEEEECchhhhc--cCCCee
Confidence 34579999999999999988864 4459999999999999999887532 235889999998765 357899
Q ss_pred EEEEcCCCCCCCCC----------------C-cchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLP----------------Q-LEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~----------------~-l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|+++......... . ..-..+++.+.+.|+|||.+++-...
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99998522111000 0 01245788899999999998865443
No 79
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.03 E-value=1.4e-09 Score=101.33 Aligned_cols=129 Identities=23% Similarity=0.303 Sum_probs=96.0
Q ss_pred ccCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--ccccC
Q 038076 137 AIVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSEDA 213 (345)
Q Consensus 137 ~~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~~ 213 (345)
.+.+..+|++-|.|+|+++.++.+. .|..+|...|++++..+.|++.|....+ ..+++++++|..+ |-...
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl------~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL------DDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC------CTTEEEEES-GGCG--STT-
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC------CCCceeEecceecccccccc
Confidence 3467889999999999999999975 6789999999999999999999864432 4689999999864 32223
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
+..+|.||+|+.+++ +.+..+.+.| ++||.+++-+.+.+ .....+.+|++.
T Consensus 111 ~~~~DavfLDlp~Pw---------~~i~~~~~~L~~~gG~i~~fsP~ie-------------------Qv~~~~~~L~~~ 162 (247)
T PF08704_consen 111 ESDFDAVFLDLPDPW---------EAIPHAKRALKKPGGRICCFSPCIE-------------------QVQKTVEALREH 162 (247)
T ss_dssp TTSEEEEEEESSSGG---------GGHHHHHHHE-EEEEEEEEEESSHH-------------------HHHHHHHHHHHT
T ss_pred cCcccEEEEeCCCHH---------HHHHHHHHHHhcCCceEEEECCCHH-------------------HHHHHHHHHHHC
Confidence 578999999998864 3577888999 89999987766544 466778888874
Q ss_pred -CCCCEEEE
Q 038076 293 -FPGKVSWK 300 (345)
Q Consensus 293 -F~~~v~~~ 300 (345)
|. .+..+
T Consensus 163 gf~-~i~~~ 170 (247)
T PF08704_consen 163 GFT-DIETV 170 (247)
T ss_dssp TEE-EEEEE
T ss_pred CCe-eeEEE
Confidence 65 44433
No 80
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.03 E-value=2.1e-09 Score=105.85 Aligned_cols=112 Identities=17% Similarity=0.054 Sum_probs=89.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~ 219 (345)
...+|+||||.|..+..+++..|+..+++||+++.+++.|.+.....+ -++++++.+|++.++.. .++.+|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g-------L~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN-------LKNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEECCHHHhhhhCCCCceeE
Confidence 458999999999999999999999999999999999999988775332 24699999999876533 4688999
Q ss_pred EEEcCCCCCCCC--CCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVL--PQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p--~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++-..+++.-. ..+...+|++.+.+.|+|||.+.+..-.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 998654443211 2356689999999999999999776543
No 81
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.02 E-value=3.7e-09 Score=104.85 Aligned_cols=112 Identities=20% Similarity=0.189 Sum_probs=82.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|.++..+.+..|+.+++++|+||++++.|+++.... +.+++++.+|..+......++||+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~--------g~rV~fi~gDl~e~~l~~~~~FDL 322 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL--------GARVEFAHGSWFDTDMPSEGKWDI 322 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCcEEEEEcchhccccccCCCccE
Confidence 456899999999999999988888999999999999999999987522 237999999987642222457999
Q ss_pred EEEcCCCCCC----CCC---------Cc--------chHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGK----VLP---------QL--------EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~----~p~---------~l--------~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+++.+-... ... .+ .-+++++.+.++|+|||.+++-...
T Consensus 323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 9998633110 000 01 1235666777899999998866543
No 82
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.02 E-value=2.6e-09 Score=102.37 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=81.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+.+|+.+++++|+ |.+++.++++..... ..+|++++.+|+.+. .-..+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g------l~~rv~~~~~d~~~~---~~~~~D 217 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG------VADRMRGIAVDIYKE---SYPEAD 217 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC------ccceEEEEecCccCC---CCCCCC
Confidence 3567999999999999999999999999999998 899999998775332 246899999998763 123479
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++.-.-... ..-...+.++++++.|+|||.+++.
T Consensus 218 ~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 218 AVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 98864322111 1112356899999999999998765
No 83
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.02 E-value=4.9e-09 Score=95.67 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=85.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||++|||+|..+..+.+..| ..+++++|+++.+++.+++.+.... .+++++++.+|+.+.. ...++||
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~-~~~~~~D 123 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG------LSGNVEFVQGDAEALP-FPDNSFD 123 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc------cccCeEEEecccccCC-CCCCCcc
Confidence 457999999999999999988776 6899999999999999999885321 1467899999998753 3457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+|++..... ..+ ...++++.+.+.|+|||.+++.-..
T Consensus 124 ~I~~~~~l~-~~~---~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 124 AVTIAFGLR-NVP---DIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred EEEEecccc-cCC---CHHHHHHHHHHhccCCcEEEEEEec
Confidence 998743221 111 2467899999999999998765443
No 84
>PRK08317 hypothetical protein; Provisional
Probab=99.02 E-value=4.7e-09 Score=95.42 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=83.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.++.+||++|||+|..+..+.+.+ |..+++++|+++.+++.|++.... ..++++++.+|+...- ..+++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--------~~~~~~~~~~d~~~~~-~~~~~ 87 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--------LGPNVEFVRGDADGLP-FPDGS 87 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--------CCCceEEEecccccCC-CCCCC
Confidence 3567899999999999999998876 678999999999999999987321 1467899999987642 24578
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
||+|++...-. ..+ ....+++.+.+.|+|||.+++..
T Consensus 88 ~D~v~~~~~~~-~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQ-HLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhh-ccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 99999853221 111 23578999999999999988754
No 85
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=8.6e-09 Score=103.96 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||.|..+..+.+.. +..+|+++|+++.+++.+++++...+ -.+++++.+|+.++.....++|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g-------~~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG-------LTNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEeCCcccccchhcccC
Confidence 355789999999999999988765 56899999999999999998875322 1349999999988754334789
Q ss_pred cEEEEcCCCCCC-C----CCC--------c-----chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQ--------L-----EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~--------l-----~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++|+...+. . |.. + ...++++.+.+.|+|||.++....+...
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 384 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEK 384 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCh
Confidence 999999864321 1 110 0 1356899999999999999876654443
No 86
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.01 E-value=4.8e-09 Score=94.75 Aligned_cols=106 Identities=11% Similarity=0.080 Sum_probs=83.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++|||.|..+..+.+..|. .+++++|+++.+++.+++.+. . ..+++++.+|+.+.. ...++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~-------~~~i~~~~~d~~~~~-~~~~~~ 107 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L-------PLNIEFIQADAEALP-FEDNSF 107 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c-------CCCceEEecchhcCC-CCCCcE
Confidence 35789999999999999999888775 799999999999999999875 1 357899999998864 345689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|++..... ..+ ...++++.+++.|+|||.+++.-.
T Consensus 108 D~i~~~~~~~-~~~---~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 108 DAVTIAFGLR-NVT---DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEEEeeeeC-Ccc---cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9998743221 111 235789999999999999886443
No 87
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=3.8e-09 Score=81.64 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=80.7
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+++++|||.|.....+.+ .+..+++++|+++..++.+++..... ...+++++.+|..++......+||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL-------LADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc-------cccceEEEEcChhhhccccCCceEEEEE
Confidence 589999999999998887 56789999999999999998532211 2467999999999986434678999999
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+...... .-....+++.+.+.|+|+|.+++.
T Consensus 73 ~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7543210 224567899999999999998864
No 88
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.00 E-value=2.4e-09 Score=96.27 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|..+.++.+. +.+|+++|++|.+++.+++...... -+++....|...+ ..+++||
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~--------~~v~~~~~d~~~~--~~~~~fD 96 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKAREN--------LPLRTDAYDINAA--ALNEDYD 96 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhC--------CCceeEeccchhc--cccCCCC
Confidence 35789999999999999999874 5799999999999999988764221 1366777776543 1246899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++-..-. ..+. -...++++.+++.|+|||.+++..
T Consensus 97 ~I~~~~~~~-~~~~-~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 97 FIFSTVVFM-FLQA-GRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred EEEEecccc-cCCH-HHHHHHHHHHHHHhCCCcEEEEEE
Confidence 998743211 1111 133578999999999999855443
No 89
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.00 E-value=4.2e-09 Score=98.30 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||++|||+|.++..+.+. +..+|+++|+||.+++.|++++..... ..++.+..+| .+||
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~------~~~~~~~~~~---------~~fD 181 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGV------ELNVYLPQGD---------LKAD 181 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCC------CceEEEccCC---------CCcC
Confidence 46789999999999999887764 445799999999999999998864321 1234433332 2799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.... .-..++..+.+.|+|||.+++.-.
T Consensus 182 ~Vvani~~~-------~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 182 VIVANILAN-------PLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred EEEEcCcHH-------HHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999864321 124678899999999999997644
No 90
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.00 E-value=2.8e-09 Score=103.64 Aligned_cols=102 Identities=11% Similarity=-0.091 Sum_probs=80.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|..+..+.+..++.+++++|+++++++.|++.+. .++++++.+|+.+. ...++.||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~----------~~~i~~i~gD~e~l-p~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP----------LKECKIIEGDAEDL-PFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh----------ccCCeEEeccHHhC-CCCCCceeE
Confidence 4578999999999999888887777899999999999999999764 23578899999874 334678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|++...-. ..+ .....++++.+.|+|||.+++.
T Consensus 182 VIs~~~L~-~~~---d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 182 YVSAGSIE-YWP---DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEcChhh-hCC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 98742111 122 2246899999999999998764
No 91
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.99 E-value=4.2e-09 Score=95.23 Aligned_cols=108 Identities=14% Similarity=-0.001 Sum_probs=81.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|+++..++... ..+|++||+|+..++.+++++.... -.+++++.+|+.+++....++||+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~-------~~~v~~~~~D~~~~l~~~~~~fDl 124 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLK-------AGNARVVNTNALSFLAQPGTPHNV 124 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEEEchHHHHHhhcCCCceE
Confidence 45789999999999998766543 4799999999999999999875432 236999999999987544457999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhc--cCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDR--LMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~--L~pgGvlvvn~~~~ 260 (345)
|++|.+-.. -...+.++.+.+. |+|+|++++.+...
T Consensus 125 V~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 125 VFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred EEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 999864211 1234556655554 89999999887654
No 92
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.99 E-value=9.7e-09 Score=105.16 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=82.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.+||++|||+|.++..+++..|+.+|+++|+||.+++.|+++..... ...+++++.+|..+.+. .++||+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~------l~~~v~~~~~D~~~~~~--~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE------VTDRIQIIHSNWFENIE--KQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC------CccceeeeecchhhhCc--CCCccEE
Confidence 468999999999999999888889999999999999999999874322 13589999999877552 4689999
Q ss_pred EEcCCCCCC-----C--------CC-Ccc--------hHHHHHHHHhccCCCcEEEEEec
Q 038076 221 VVDLFSEGK-----V--------LP-QLE--------EVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 221 i~D~f~~~~-----~--------p~-~l~--------t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++.+--.. . |. .++ -..+++.+.+.|+|||.+++-+.
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 997532110 0 00 011 13356677889999999988654
No 93
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.99 E-value=8e-09 Score=104.85 Aligned_cols=109 Identities=12% Similarity=0.116 Sum_probs=83.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.+||+||||.|..+..+.+.+ +.+|+++|+++.+++.|++.... ...+++++.+|..+.. -.+++||
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~--------~~~~v~~~~~d~~~~~-~~~~~fD 334 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG--------RKCSVEFEVADCTKKT-YPDNSFD 334 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc--------CCCceEEEEcCcccCC-CCCCCEE
Confidence 356789999999999999888765 67999999999999999987531 1357999999987642 2357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|++...- .+++ ....+++++++.|+|||.+++..+...
T Consensus 335 ~I~s~~~l-~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 335 VIYSRDTI-LHIQ---DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EEEECCcc-cccC---CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 99983211 1121 235789999999999999998765443
No 94
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.98 E-value=7.9e-09 Score=102.68 Aligned_cols=112 Identities=18% Similarity=0.043 Sum_probs=82.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+.++||++|||+|.++..++. .+..+|++||+|+.+++.|++++..... ...+++++.+|+.++++. ..+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl-----~~~~v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKL-----DLSKAEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCcEEEEEccHHHHHHHHHhcCC
Confidence 3578999999999999876654 3456999999999999999999976542 124799999999999854 356
Q ss_pred cccEEEEcCCCCCCCCCCcc-----hHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLE-----EVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~-----t~ef~~~~~~~L~pgGvlvvn 256 (345)
+||+||+|.+.-..-...+. -.+++..+.++|+|||+++.-
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~ 338 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTF 338 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 89999999654211001111 124455678999999988753
No 95
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=9e-09 Score=103.44 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=89.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+.++.+.. +..+|+++|+++.+++.+++++.-.+ -.+++++.+|+..+.....++|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g-------~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK-------LSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCeEEEEECchhhhhhhhhccC
Confidence 456789999999999998888765 45899999999999999998874222 2358999999988643345789
Q ss_pred cEEEEcCCCCCC-C----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|++..+. . |... ...+.+..+.+.|+|||.++....+...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 999999877432 1 1110 2366788999999999999887776654
No 96
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.98 E-value=4.7e-09 Score=98.76 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=80.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+||||+|..+..+.+. .+..+|+++|+++.+++.|+++..... -++++++.+|..+. ...++.|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g-------~~~v~~~~~d~~~l-~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG-------YTNVEFRLGEIEAL-PVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC-------CCCEEEEEcchhhC-CCCCCce
Confidence 45689999999999888776665 355789999999999999999764221 24789999998763 3345689
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|+.+..-. ..+ ...+.++++.+.|+|||.+++.
T Consensus 148 D~Vi~~~v~~-~~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 148 DVIISNCVIN-LSP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred eEEEEcCccc-CCC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 9999764221 111 2357899999999999999874
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.98 E-value=6.6e-09 Score=94.30 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=77.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||++|||+|..+..+.+.. .+++++|+++++++.|++++.... -.+++++.+|+.+.+. ..++||
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~-------~~~v~~~~~d~~~~~~-~~~~fD 146 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLG-------LHNVSVRHGDGWKGWP-AYAPFD 146 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCC-------CCceEEEECCcccCCC-cCCCcC
Confidence 456899999999999998777653 489999999999999999885322 2358999999876543 347899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+++.... ...+.+.+.|+|||.+++...
T Consensus 147 ~I~~~~~~~----------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 147 RILVTAAAP----------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEEccCch----------hhhHHHHHhcCCCcEEEEEEc
Confidence 999975221 123456789999999999876
No 98
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.97 E-value=9.9e-09 Score=96.64 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=97.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|+|.|..+..+.+..+ ...|+++|+++.+++.+++.+.... -.+++++.+|++.+.. ..++|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g-------~~~v~~~~~D~~~~~~-~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG-------VLNVAVTNFDGRVFGA-AVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC-------CCcEEEecCCHHHhhh-hccCC
Confidence 3557899999999999998887654 4699999999999999999885332 2468999999987633 34569
Q ss_pred cEEEEcCCCCCC-C----CCC-------------cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 218 AGIVVDLFSEGK-V----LPQ-------------LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~-------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
|.|++|+...+. . |.. -...+.++.+.+.|+|||.++....+...
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~----------------- 204 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP----------------- 204 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh-----------------
Confidence 999999865432 1 111 02356888999999999999877655443
Q ss_pred HHHHHHHHHHHHHCCCC
Q 038076 280 WMHNSAIRALSEAFPGK 296 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~ 296 (345)
..-..+++.+.+.+++.
T Consensus 205 ~Ene~vv~~~l~~~~~~ 221 (264)
T TIGR00446 205 EENEAVVDYLLEKRPDV 221 (264)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 22356667777777743
No 99
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.97 E-value=2.5e-09 Score=113.49 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=87.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||++|||+|.++.++++. +..+|++||+++.+++.|++++..... ...+++++.+|+.++++..+++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~-----~~~~v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGL-----SGRQHRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-----CccceEEEEccHHHHHHHcCCCcCE
Confidence 5789999999999999998874 446799999999999999999975542 1258999999999998655678999
Q ss_pred EEEcCCCCCCC--CCCc-----chHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKV--LPQL-----EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~--p~~l-----~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||+|.+.-... .... .-.+.+..+.++|+|||++++....
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99996432110 0000 1135677888899999998875543
No 100
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=1.5e-08 Score=101.68 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=88.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..+||++|||+|..+..+.+..++.+|+++|+++.+++.+++++... +.+++++.+|+.+.... .+++|
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~--------g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL--------GLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCeEEEEcCcccchhhcccCCC
Confidence 4567899999999999999998776689999999999999999987532 22478999999875321 35689
Q ss_pred cEEEEcCCCCC-CC----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEG-KV----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~-~~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|.+..+ +. |... ...++++.+.+.|+|||.+++...+...
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 99999985432 11 1110 1236889999999999999987765544
No 101
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=1.3e-08 Score=102.79 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=88.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||++|||+|..+..+.+..+ ..+|+++|+++.+++.+++++.-.. -.+++++.+|+.++. .+++|
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-------~~~v~~~~~Da~~~~--~~~~f 319 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG-------ITIIETIEGDARSFS--PEEQP 319 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC-------CCeEEEEeCcccccc--cCCCC
Confidence 3557899999999999888877543 4799999999999999998874322 136899999999875 34689
Q ss_pred cEEEEcCCCCCC-C----CCC---c----------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQ---L----------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~---l----------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|++..+. . |.. + ...+++..+.+.|+|||++++...+...
T Consensus 320 D~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 320 DAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 999999865432 1 111 1 1246899999999999999998877665
No 102
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.96 E-value=8.8e-09 Score=99.93 Aligned_cols=122 Identities=14% Similarity=-0.019 Sum_probs=88.1
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.|..+....+..+||++|||+|+++..+.. .+.+++++|+|+.+++.|++++.... .++++++.+|+.+.
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g-------~~~i~~~~~D~~~l 242 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYG-------IEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhC-------CCCCeEEecchhcC
Confidence 3343333334567899999999999887665 36899999999999999998774322 12388999999884
Q ss_pred cccCCCcccEEEEcCCCCCCC--CCC---cchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKV--LPQ---LEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~--p~~---l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
....++||+|++|.+-+... ..+ -.-.++++.+++.|+|||.+++-+....
T Consensus 243 -~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 243 -PLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred -CcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 33467899999996543211 111 1236789999999999999988776543
No 103
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.95 E-value=8.2e-09 Score=102.22 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=80.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||.|.++..+.+.+ +.+|+++|+++++++.|++... +..+++..+|.++. +++||
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~----------~l~v~~~~~D~~~l----~~~fD 230 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA----------GLPVEIRLQDYRDL----NGQFD 230 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc----------cCeEEEEECchhhc----CCCCC
Confidence 456799999999999999988764 5799999999999999998763 22488888998764 46899
Q ss_pred EEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.|++- .+. .++. -.-.++++.+.+.|+|||.+++......
T Consensus 231 ~Ivs~~~~e--hvg~-~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 231 RIVSVGMFE--HVGP-KNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EEEEeCchh--hCCh-HHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 99862 111 1111 1225789999999999999998766544
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=98.94 E-value=8.7e-09 Score=96.94 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=82.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...+||++|||+|.++..+.++.+..+|++||+||.+++.|++.+ ++++++.+|++++.. .++||+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------------~~v~~v~~D~~e~~~--~~kFDl 129 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------------PEAEWITSDVFEFES--NEKFDV 129 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------------cCCEEEECchhhhcc--cCCCcE
Confidence 357999999999999988887766789999999999999999864 257899999999853 468999
Q ss_pred EEEcCCCCCCCCC---C--cc-----------hHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLP---Q--LE-----------EVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~---~--l~-----------t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+++..-....+. . -+ -.+++......|+|+|.+.+-+.+..
T Consensus 130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 9997533211000 0 11 25788888999999997766654433
No 105
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.93 E-value=4.5e-09 Score=99.17 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS---LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~---~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+..+||++|||+|..+..+.+..+. .+++++|+++.+++.|++.+ +++++.++|+.+. .-.+++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------------~~~~~~~~d~~~l-p~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------------PQVTFCVASSHRL-PFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------------CCCeEEEeecccC-CCcCCc
Confidence 4467999999999999998877653 47999999999999998754 3478899998874 335678
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
||+|+.- +. ..+++++++.|+|||.+++-..+.
T Consensus 152 fD~I~~~-~~----------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 152 LDAIIRI-YA----------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eeEEEEe-cC----------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 9999862 22 123577889999999998765543
No 106
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=3.1e-08 Score=94.12 Aligned_cols=106 Identities=20% Similarity=0.197 Sum_probs=81.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+||+||+|+|.++..+++..|..+|+++||+|..+++|+++..... -.++.++.+|..+- ..++||+|++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~-------l~~~~~~~~dlf~~---~~~~fDlIVs 182 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG-------LVRVLVVQSDLFEP---LRGKFDLIVS 182 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC-------CccEEEEeeecccc---cCCceeEEEe
Confidence 8999999999999999999999999999999999999999875332 14566666665544 4459999998
Q ss_pred cCCCCCCCCCC----------------c--------chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 223 DLFSEGKVLPQ----------------L--------EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 223 D~f~~~~~p~~----------------l--------~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+. +++|.. + ....++..+.+.|+|||++++-.....
T Consensus 183 NP---PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 183 NP---PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred CC---CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 54 222211 0 245677889999999999998776433
No 107
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.93 E-value=1.8e-08 Score=101.10 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=87.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~y 217 (345)
.+..+||++|||.|..+..+.+..+..+|+++|+++.+++.+++...-... ..+++++.+|+..... ...++|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~------~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL------TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEecccccccccccccccc
Confidence 356789999999999999999877778999999999999999988753221 1234457777765321 135689
Q ss_pred cEEEEcCCCCC-CC----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEG-KV----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~-~~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|+...+ +. |.-. ...+++..+.+.|+|||.+++...+...
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99999986543 21 2111 1367899999999999999988776664
No 108
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.92 E-value=7.5e-09 Score=98.52 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=79.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||+||||+|..+..+.+. +.+|+++|+++.+++.+++..... +-++++...|....- .+++||
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~--------~l~v~~~~~D~~~~~--~~~~fD 186 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE--------NLNIRTGLYDINSAS--IQEEYD 186 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc--------CCceEEEEechhccc--ccCCcc
Confidence 35679999999999999998874 579999999999999999876432 236888888886642 367899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|++-..-. .++. -....+++.+.+.|+|||.+++..
T Consensus 187 ~I~~~~vl~-~l~~-~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 187 FILSTVVLM-FLNR-ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred EEEEcchhh-hCCH-HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999753221 1111 133578999999999999966543
No 109
>PRK06922 hypothetical protein; Provisional
Probab=98.92 E-value=5.6e-09 Score=108.15 Aligned_cols=111 Identities=20% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD 218 (345)
++.+||+||||+|..+..+.+.+|+.+++++|+++.|++.|++..... +.+++++.+|+.+.-. -.+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~--------g~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE--------GRSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc--------CCCeEEEEcchHhCccccCCCCEE
Confidence 578999999999999998888889999999999999999999875321 3568889999987421 2467899
Q ss_pred EEEEcCCCCC---CCCC------CcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEG---KVLP------QLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~---~~p~------~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|++...-+. .+|. .-....+++++.+.|+|||.+++.-.
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9987431110 1110 11346789999999999999988643
No 110
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=2.8e-09 Score=97.07 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=77.2
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.+..+||+||+|+|..+..+.+.. +..+|++||++|.+.+.|++.+.... ..+++++++|+..-.. ....
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~-------~~nv~~~~gdg~~g~~-~~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG-------IDNVEVVVGDGSEGWP-EEAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT-------THSEEEEES-GGGTTG-GG-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc-------cCceeEEEcchhhccc-cCCC
Confidence 5677899999999999998888764 34689999999999999999985322 3489999999988654 3568
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
||.|++..... .+| ..+.+.|++||++++-+..
T Consensus 142 fD~I~v~~a~~-~ip---------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 142 FDRIIVTAAVP-EIP---------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEEEESSBBS-S-----------HHHHHTEEEEEEEEEEESS
T ss_pred cCEEEEeeccc-hHH---------HHHHHhcCCCcEEEEEEcc
Confidence 99999975332 222 2345679999999998875
No 111
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.91 E-value=1.2e-08 Score=93.26 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC-----CCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK-----PTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~-----~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
+..+||++|||.|..+.+|+++ +.+|++||++|..++.+.+..+...... ..+...+++++++|..++-....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4579999999999999999874 7899999999999998655433321000 01124679999999998743234
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||.|+--.+-. .+|+. ....+++.+.+.|+|||.+++-+.
T Consensus 112 ~~fD~i~D~~~~~-~l~~~-~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALI-ALPEE-MRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhc-cCCHH-HHHHHHHHHHHHcCCCCeEEEEEE
Confidence 6799997432221 33332 345689999999999997555443
No 112
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.91 E-value=9.5e-09 Score=91.83 Aligned_cols=148 Identities=15% Similarity=0.054 Sum_probs=96.3
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-.+++++|||.|.++..|..+. .+++++|+++..++.|++...- -+++++++.|..++. ++++||+|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~---------~~~V~~~~~dvp~~~--P~~~FDLI 110 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAG---------LPHVEWIQADVPEFW--PEGRFDLI 110 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT----------SSEEEEES-TTT-----SS-EEEE
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCC---------CCCeEEEECcCCCCC--CCCCeeEE
Confidence 3689999999999999998764 5899999999999999998862 368999999998874 67899999
Q ss_pred EEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEE
Q 038076 221 VVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSW 299 (345)
Q Consensus 221 i~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~ 299 (345)
++--. .++.... .-..+.+.+.+.|+|||.+++--+.... . ..|... .--+.+...+++.|- .|..
T Consensus 111 V~SEV--lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~--c---~~wgh~-----~ga~tv~~~~~~~~~-~~~~ 177 (201)
T PF05401_consen 111 VLSEV--LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDAN--C---RRWGHA-----AGAETVLEMLQEHLT-EVER 177 (201)
T ss_dssp EEES---GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHH--H---HHTT-S-------HHHHHHHHHHHSE-EEEE
T ss_pred EEehH--hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCc--c---cccCcc-----cchHHHHHHHHHHhh-heeE
Confidence 98311 1221111 1234778899999999999985553211 0 112111 124677888898888 6654
Q ss_pred EEec-CCCCceEEEEe
Q 038076 300 KRMP-ERNGENFLALT 314 (345)
Q Consensus 300 ~~~~-~~~~~n~v~~a 314 (345)
.... +..+.+.++..
T Consensus 178 ~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 178 VECRGGSPNEDCLLAR 193 (201)
T ss_dssp EEEE-SSTTSEEEEEE
T ss_pred EEEcCCCCCCceEeee
Confidence 4443 34566766543
No 113
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.1e-08 Score=97.27 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++++||++|||+|.++...++. ...++.++||||..++.|+++..++.. .+..+.-..+..... ..++||
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v------~~~~~~~~~~~~~~~--~~~~~D 231 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGV------ELLVQAKGFLLLEVP--ENGPFD 231 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCC------chhhhcccccchhhc--ccCccc
Confidence 47899999999999999988864 668899999999999999999876542 112222222333322 247999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHH-HHHCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRAL-SEAFP 294 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l-~~~F~ 294 (345)
+|+..+-.. .-.++...++++|+|||.+++.=.-.+ ..+.+..++ ++-|.
T Consensus 232 vIVANILA~-------vl~~La~~~~~~lkpgg~lIlSGIl~~-------------------q~~~V~~a~~~~gf~ 282 (300)
T COG2264 232 VIVANILAE-------VLVELAPDIKRLLKPGGRLILSGILED-------------------QAESVAEAYEQAGFE 282 (300)
T ss_pred EEEehhhHH-------HHHHHHHHHHHHcCCCceEEEEeehHh-------------------HHHHHHHHHHhCCCe
Confidence 999866332 124788899999999999987654333 255677777 44566
No 114
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.89 E-value=2e-08 Score=91.11 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=76.4
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.+||+||||+|..+..+.+..|+.++++||++|++++.|++++. +++++.+|+.+. ..+++|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------------~~~~~~~d~~~~--~~~~sf 106 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------------NINIIQGSLFDP--FKDNFF 106 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------------CCcEEEeeccCC--CCCCCE
Confidence 356789999999999999999887788999999999999999998642 366888998873 356799
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+|++...-. ++++ -.-.++++++.+.++ +-+++.....
T Consensus 107 D~V~~~~vL~-hl~p-~~~~~~l~el~r~~~-~~v~i~e~~~ 145 (204)
T TIGR03587 107 DLVLTKGVLI-HINP-DNLPTAYRELYRCSN-RYILIAEYYN 145 (204)
T ss_pred EEEEECChhh-hCCH-HHHHHHHHHHHhhcC-cEEEEEEeeC
Confidence 9999743221 1221 123567888888763 2344445443
No 115
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.89 E-value=2.3e-08 Score=92.23 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC------CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS------LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~------~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
+..++|+++||+|-++--++++-+. .+|+++||+|+|++.+++.-...++ ..++++.++.+||.+ |.-+
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l----~~~~~~~w~~~dAE~-LpFd 174 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL----KASSRVEWVEGDAED-LPFD 174 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC----CcCCceEEEeCCccc-CCCC
Confidence 4579999999999999888887555 8999999999999999987721111 236789999999998 4567
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+..||...+ +|.-.+.+ .-...+++++|.|||||++.+
T Consensus 175 d~s~D~yTi-afGIRN~t---h~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 175 DDSFDAYTI-AFGIRNVT---HIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CCcceeEEE-ecceecCC---CHHHHHHHHHHhcCCCcEEEE
Confidence 889999887 33332222 225689999999999999874
No 116
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=2.1e-08 Score=97.01 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=77.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+||||+|.++..+.+..+. .+|++||++|++++.|++...... -.+++++.+|+.+.... .+.|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g-------~~nV~~i~gD~~~~~~~-~~~f 150 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG-------IENVIFVCGDGYYGVPE-FAPY 150 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEeCChhhcccc-cCCc
Confidence 45679999999999999999887653 579999999999999998764322 24689999999876543 3579
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+|+++.... +....+.+.|+|||.+++...
T Consensus 151 D~Ii~~~g~~----------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 151 DVIFVTVGVD----------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred cEEEECCchH----------HhHHHHHHhcCCCCEEEEEeC
Confidence 9999874221 122345678999999887653
No 117
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.88 E-value=4.4e-09 Score=97.30 Aligned_cols=110 Identities=19% Similarity=0.251 Sum_probs=81.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
.++||++|||||.+...|.+. +.+|+++|+.+++++.|+++-...+..+ ..-.-|+++.+.|+... .++||+|
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~-~~~~y~l~~~~~~~E~~----~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLE-GAIAYRLEYEDTDVEGL----TGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhc-cccceeeehhhcchhhc----cccccee
Confidence 367999999999999999875 5899999999999999999965443210 00111566777776553 4569999
Q ss_pred EEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|- .+..|. .-.||++.+.++|+|||.+.+...+...
T Consensus 163 vcs-----evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 163 VCS-----EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eeH-----HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 972 122221 2368999999999999999988776654
No 118
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=3.8e-08 Score=99.06 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=88.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---cCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---DAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~~~ 214 (345)
.+..+||++|||.|..+..+.+..+ ..+|+++|+++.+++.+++++.-.+ -.+++++.+|+.++.. ...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g-------~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG-------LKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC-------CCeEEEEeCChhhccccccccc
Confidence 3567899999999999998887643 4799999999999999998874322 1359999999988642 124
Q ss_pred CcccEEEEcCCCCCC-C----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 GRYAGIVVDLFSEGK-V----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~-~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++||.|++|++..+. . |... ...+.++.+.+.|+|||.++....+...
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 689999999875431 1 2111 1367899999999999999877655443
No 119
>PTZ00146 fibrillarin; Provisional
Probab=98.88 E-value=8e-08 Score=91.32 Aligned_cols=139 Identities=14% Similarity=0.044 Sum_probs=90.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--ccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--EDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~~~~ 215 (345)
.+..+||+||||+|+.+..+.+... ..+|++||+++.+.+...+... . .+++..+++|++.-. ....+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--~-------r~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--K-------RPNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--h-------cCCCEEEECCccChhhhhcccC
Confidence 4557899999999999999998753 4699999999975533333221 0 246889999997521 11245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH-CC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA-FP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~-F~ 294 (345)
.+|+|++|... |. ....+..++++.|+|||.+++-+-....+. + .+....+.+.++.|++. |.
T Consensus 202 ~vDvV~~Dva~----pd--q~~il~~na~r~LKpGG~~vI~ika~~id~----g------~~pe~~f~~ev~~L~~~GF~ 265 (293)
T PTZ00146 202 MVDVIFADVAQ----PD--QARIVALNAQYFLKNGGHFIISIKANCIDS----T------AKPEVVFASEVQKLKKEGLK 265 (293)
T ss_pred CCCEEEEeCCC----cc--hHHHHHHHHHHhccCCCEEEEEEecccccc----C------CCHHHHHHHHHHHHHHcCCc
Confidence 79999999842 22 223456688999999999998433222210 0 00012234446888887 87
Q ss_pred CCEEEEEec
Q 038076 295 GKVSWKRMP 303 (345)
Q Consensus 295 ~~v~~~~~~ 303 (345)
.+....++
T Consensus 266 -~~e~v~L~ 273 (293)
T PTZ00146 266 -PKEQLTLE 273 (293)
T ss_pred -eEEEEecC
Confidence 55544554
No 120
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.86 E-value=4e-08 Score=86.12 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||.|.++..+++. ..++++||+|+.+++.+++.+.. .++++++.+|+.++.. .+.+||
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---------~~~v~ii~~D~~~~~~-~~~~~d 79 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA---------ADNLTVIHGDALKFDL-PKLQPY 79 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---------CCCEEEEECchhcCCc-cccCCC
Confidence 34568999999999999999986 57999999999999999998742 3589999999998743 334699
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhc--cCCCcEEEEEecCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDR--LMPNGRFMVNCGGI 260 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~--L~pgGvlvvn~~~~ 260 (345)
.|+.+. |.+. +.+.+..+.+. +.++|++++.....
T Consensus 80 ~vi~n~------Py~~-~~~~i~~~l~~~~~~~~~~l~~q~e~a 116 (169)
T smart00650 80 KVVGNL------PYNI-STPILFKLLEEPPAFRDAVLMVQKEVA 116 (169)
T ss_pred EEEECC------Cccc-HHHHHHHHHhcCCCcceEEEEEEHHHh
Confidence 999853 3333 34555555443 45889998876533
No 121
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.85 E-value=2.8e-08 Score=91.19 Aligned_cols=106 Identities=16% Similarity=0.119 Sum_probs=82.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++.+... +.+++++.+|..++.....++||+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES--------GLKIDYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc--------CCceEEEecCHHHhhhhcCCCccE
Confidence 5678999999999999888764 578999999999999999887532 235788889988876445679999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|++...-. ..+ ...++++.+.+.|+|||.+++....
T Consensus 118 Ii~~~~l~-~~~---~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 118 VTCMEMLE-HVP---DPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred EEEhhHhh-ccC---CHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99843211 111 2357899999999999999887654
No 122
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.84 E-value=2e-08 Score=96.34 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC---
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG--- 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~--- 215 (345)
++.+||++|||+|..++.+++..+ +.++++||++++|++.|++.+.-.. ..-++..+++|..+.+.-...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~------p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY------PQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC------CCceEEEEEEcccchhhhhccccc
Confidence 457899999999999999998766 5899999999999999988764210 023466789999875432221
Q ss_pred -cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCcc----chHHHHHHHHHHH
Q 038076 216 -RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMN----DVWMHNSAIRALS 290 (345)
Q Consensus 216 -~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d----~~~~~~~~~~~l~ 290 (345)
...+++++.... ..+ .-....+++.+++.|+|||.+++.+...... ... . ....| ...+..+++..++
T Consensus 137 ~~~~~~~~gs~~~-~~~-~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~-~~~-~---~aY~d~~g~t~~F~~N~L~~~n 209 (301)
T TIGR03438 137 GRRLGFFPGSTIG-NFT-PEEAVAFLRRIRQLLGPGGGLLIGVDLVKDP-AVL-E---AAYNDAAGVTAAFNLNLLRRLN 209 (301)
T ss_pred CCeEEEEeccccc-CCC-HHHHHHHHHHHHHhcCCCCEEEEeccCCCCH-HHH-H---HhhcCchhhHHHHHHHHHHHHH
Confidence 222333332221 121 2234578999999999999999766544431 000 0 00011 1135666777777
Q ss_pred HHCCC
Q 038076 291 EAFPG 295 (345)
Q Consensus 291 ~~F~~ 295 (345)
+.+.+
T Consensus 210 ~~l~~ 214 (301)
T TIGR03438 210 RELGG 214 (301)
T ss_pred HHhcc
Confidence 77654
No 123
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=90.87 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE-EEEcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ-VHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~-v~~gDa~~~l~~~~~~yD~ 219 (345)
...||++|||+|..-.+.- .-|+.+||.+|.+|.|-+++.+.+.... .+++. ++++|+.+..+-.+.+||.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k-------~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKK-------PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred ccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhcc-------CcceEEEEeechhcCcccccCCeee
Confidence 4568999999999877643 2378999999999999999999885332 45676 9999999975457899999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++-+.- -.+-...+.++++++.|+|||++++-=+...+
T Consensus 149 VV~TlvL----CSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 149 VVCTLVL----CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred EEEEEEE----eccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 9974311 11123468899999999999999876555443
No 124
>PRK06202 hypothetical protein; Provisional
Probab=98.82 E-value=5.6e-08 Score=89.43 Aligned_cols=108 Identities=12% Similarity=-0.056 Sum_probs=74.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
.++.+||+||||+|.++..+.+. .++.+|+++|++|++++.|++... .+++++...|+... ...+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~----------~~~~~~~~~~~~~l-~~~~ 127 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR----------RPGVTFRQAVSDEL-VAEG 127 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc----------cCCCeEEEEecccc-cccC
Confidence 35678999999999998887753 345799999999999999998754 23455666655443 2256
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
++||+|++...-. +.++. ...++++++.+.++ |.++++-....
T Consensus 128 ~~fD~V~~~~~lh-h~~d~-~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLH-HLDDA-EVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeee-cCChH-HHHHHHHHHHHhcC--eeEEEeccccC
Confidence 7999999843221 22221 13578999999887 55556654443
No 125
>PLN02672 methionine S-methyltransferase
Probab=98.81 E-value=5.1e-08 Score=106.60 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=88.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC---------CCCCCCcEEEEEcccccccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK---------PTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~---------~~~~~~rv~v~~gDa~~~l~ 211 (345)
+.+||+||||+|.++..+.+.+|..+|+++||+|++++.|+++......+. ......|++++++|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999999999998888899999999999999998875432110 00112579999999998774
Q ss_pred cCCCcccEEEEcCCCCC-----CC--------C----------CCcch-----------HHHHHHHHhccCCCcEEEEEe
Q 038076 212 DASGRYAGIVVDLFSEG-----KV--------L----------PQLEE-----------VATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~-----~~--------p----------~~l~t-----------~ef~~~~~~~L~pgGvlvvn~ 257 (345)
....+||+|+...+--. .+ | ..|.. +..+..+.++|+|||.+++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 33347999998653210 00 1 11222 456677788999999999999
Q ss_pred cCCC
Q 038076 258 GGID 261 (345)
Q Consensus 258 ~~~~ 261 (345)
+...
T Consensus 279 G~~q 282 (1082)
T PLN02672 279 GGRP 282 (1082)
T ss_pred CccH
Confidence 8544
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=98.81 E-value=3.4e-08 Score=91.03 Aligned_cols=99 Identities=8% Similarity=-0.040 Sum_probs=72.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW---PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
...+||++|||+|.++..+.+.. +..+|++||||+.+++.|++.. ++++++.+|...+. .+++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------------~~~~~~~~D~~~~~--~~~~ 114 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------------PEATWINADALTTE--FDTL 114 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------------cCCEEEEcchhccc--ccCC
Confidence 36799999999999999888753 3579999999999999999764 24789999998753 3568
Q ss_pred ccEEEEcCCCCC-CCC-------CCcchHHHHHHHHhccCCCcE
Q 038076 217 YAGIVVDLFSEG-KVL-------PQLEEVATWLKLKDRLMPNGR 252 (345)
Q Consensus 217 yD~Ii~D~f~~~-~~p-------~~l~t~ef~~~~~~~L~pgGv 252 (345)
||+||++.+-.. ... ..+....+++.+.+++++|+.
T Consensus 115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999999753321 111 113345678888875555554
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.79 E-value=1.5e-08 Score=91.35 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=93.3
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD~I 220 (345)
-+|+||||.|.....++..+|+..+.+||+....+..|.+...... -+++.++.+||..++.. .+++.|-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~-------l~Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG-------LKNVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT-------TSSEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc-------ccceEEEEccHHHHHhhcccCCchheE
Confidence 6899999999999999999999999999999999998876664322 46899999999998765 46899999
Q ss_pred EEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 221 VVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 221 i~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
.+-.++++. .-..+.+.+|++.+.+.|+|||.+-+-.-. ......++..+.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~-------------------~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV-------------------EEYAEWMLEQFEES 149 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES--------------------HHHHHHHHHHHHHH
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC-------------------HHHHHHHHHHHHhc
Confidence 997777642 124488999999999999999988543321 14566777777765
No 128
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.79 E-value=5.9e-08 Score=93.56 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHH---HHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKV---RDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A---~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+.++||+||||+|.+...+....+ ..|++||+++.++..+ +++.. .++++++...|..+.- ...
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~---------~~~~v~~~~~~ie~lp--~~~ 187 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLD---------NDKRAILEPLGIEQLH--ELY 187 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhc---------cCCCeEEEECCHHHCC--CCC
Confidence 3568999999999999888876543 5899999999998643 34432 1357888888876642 235
Q ss_pred cccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++-. +..|. .-.++++++++.|+|||.+++...
T Consensus 188 ~FD~V~s~g-----vL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 188 AFDTVFSMG-----VLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CcCEEEEcc-----hhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 899999732 11122 124799999999999999998754
No 129
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.79 E-value=4e-08 Score=95.15 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHH---HhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVR---DYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~---~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.++||+||||+|..+..+++..+ ..|+++|+++.++..++ ++.+ .+++++++.+|+.+. .. +++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~---------~~~~i~~~~~d~e~l-p~-~~~ 189 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLG---------NDQRAHLLPLGIEQL-PA-LKA 189 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcC---------CCCCeEEEeCCHHHC-CC-cCC
Confidence 468999999999999998887644 46999999999886533 2222 145799999998775 32 678
Q ss_pred ccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEec
Q 038076 217 YAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+|++-. ...|. ...++++++++.|+|||.+++...
T Consensus 190 FD~V~s~~-----vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 190 FDTVFSMG-----VLYHRRSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred cCEEEECC-----hhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 99999721 11111 235789999999999999998754
No 130
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.78 E-value=1.8e-08 Score=96.17 Aligned_cols=101 Identities=17% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++||++|||+|.++...++. +..+|+++||||..++.|+++..++.. ..++++. ...+. ..++||
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~------~~~~~v~--~~~~~---~~~~~d 227 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGV------EDRIEVS--LSEDL---VEGKFD 227 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-------TTCEEES--CTSCT---CCS-EE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCC------CeeEEEE--Eeccc---ccccCC
Confidence 45689999999999999988874 567999999999999999999876653 3466653 22222 348999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+.++... .-.+....+.++|+|||.+++.=.
T Consensus 228 lvvANI~~~-------vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 228 LVVANILAD-------VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EEEEES-HH-------HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEECCCHH-------HHHHHHHHHHHhhCCCCEEEEccc
Confidence 999876442 124577788899999999987544
No 131
>PRK05785 hypothetical protein; Provisional
Probab=98.78 E-value=1.2e-07 Score=87.33 Aligned_cols=90 Identities=4% Similarity=-0.063 Sum_probs=69.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+.. +.+|+++|++++|++.|++.. ..+++|+.+. .-.+++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~---------------~~~~~d~~~l-p~~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD---------------DKVVGSFEAL-PFRDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc---------------ceEEechhhC-CCCCCCEEE
Confidence 46899999999999999998875 579999999999999998631 1357888763 446789999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPN 250 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg 250 (345)
|++-. .-...+ ...+.++++++.|+|.
T Consensus 114 v~~~~-~l~~~~---d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 114 VMSSF-ALHASD---NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred EEecC-hhhccC---CHHHHHHHHHHHhcCc
Confidence 99832 211221 2357899999999994
No 132
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.77 E-value=5.2e-08 Score=88.63 Aligned_cols=108 Identities=15% Similarity=0.066 Sum_probs=82.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+.+||++|||+|.++..+.+. +.+++++|+++.+++.+++.+.... ..++++..+|+.++....+.+||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDP-------LLKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEeCCHHHhhcCCCCCccE
Confidence 4679999999999999888764 4579999999999999999875322 125888999998876544578999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|++...-. ... ...++++.+++.|+|||.+++.....
T Consensus 116 i~~~~~l~-~~~---~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 116 VTCMEVLE-HVP---DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EEehhHHH-hCC---CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99742111 111 23578999999999999988766543
No 133
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.77 E-value=3.8e-08 Score=88.32 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=76.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.++.++|+||||.|..+.+|++. +..|++||+++.-++.+++..... +-.++....|..++- .++.||
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~--------~l~i~~~~~Dl~~~~--~~~~yD 96 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEE--------GLDIRTRVADLNDFD--FPEEYD 96 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHT--------T-TEEEEE-BGCCBS---TTTEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhc--------CceeEEEEecchhcc--ccCCcC
Confidence 36889999999999999999985 789999999999998877654322 223888999987763 357899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+|+...... ..+.. .-...++.+++.++|||.+++.+.
T Consensus 97 ~I~st~v~~-fL~~~-~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 97 FIVSTVVFM-FLQRE-LRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EEEEESSGG-GS-GG-GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEEEec-cCCHH-HHHHHHHHHHhhcCCcEEEEEEEe
Confidence 999753221 22222 336789999999999999887543
No 134
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.76 E-value=4.8e-08 Score=89.52 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=79.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-----CCCCCCCcEEEEEcccccccccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-----KPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-----~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
+..+||++|||.|..+.+|+++ +.+|++||++|..++.+.+.-++.... ...+...+++++++|..++-....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 4579999999999999999874 789999999999999875433332100 011235789999999999754334
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..||.|+--..-. .+|++ ...++++.+.+.|+|||.+++
T Consensus 115 ~~fd~v~D~~~~~-~l~~~-~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALI-ALPEE-MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHh-hCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 6899988422111 23322 356789999999999986433
No 135
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.76 E-value=3.4e-08 Score=93.03 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=76.6
Q ss_pred CCCCEEEEeecccH----HHHHHHHhCC-----CCEEEEEECCHHHHHHHHHhcCC-------CC---------CCCC--
Q 038076 140 PNGPIAIYGLGGGT----AAHLMLDLWP-----SLKLEGWEIDEILIDKVRDYFGL-------SD---------LEKP-- 192 (345)
Q Consensus 140 ~p~~VLiIG~G~G~----~~~~l~~~~p-----~~~v~~VEidp~vi~~A~~~f~~-------~~---------~~~~-- 192 (345)
++.+|+++|||+|. ++..+.+..+ +.+|+++|||+.+++.|++...- ++ ..+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999994 6666666543 47999999999999999974310 00 0000
Q ss_pred --CCCCCcEEEEEcccccccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 193 --TATGGVLQVHIGDVFSPSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 193 --~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..-..++++..+|..+.- ...++||+|++- ++. +++ .-...++++.+.+.|+|||.+++-
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~--yf~-~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLI--YFD-EPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHH--hCC-HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 001246888888988742 236789999982 111 111 113457999999999999999863
No 136
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.75 E-value=6.6e-08 Score=86.69 Aligned_cols=109 Identities=12% Similarity=-0.119 Sum_probs=81.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---SG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~~ 215 (345)
.+..++|+++||+|+++.+++.+. ..+|+.||+|+..++.++++...... ..+++++.+|+.+++... ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~~~~~------~~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLALLKS------GEQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------cccEEEEehhHHHHHHHhhccCC
Confidence 356889999999999999999863 46899999999999999998754431 347999999998887532 23
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~ 259 (345)
.||+|++|.+-... ...+.++.+. ..|+++|++++-...
T Consensus 121 ~~dvv~~DPPy~~~-----~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 121 FDNVIYLDPPFFNG-----ALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CceEEEECcCCCCC-----cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 58999998644321 2344555543 358999999876554
No 137
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.74 E-value=1.3e-07 Score=91.34 Aligned_cols=106 Identities=15% Similarity=0.053 Sum_probs=79.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||++|||+|.++..+.+ ++.+|++||+++.+++.|++...... -++++++.+|+.++.....++||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~-------l~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELG-------LTNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEEcCHHHHHHhcCCCCeE
Confidence 468899999999999999987 35799999999999999998875332 247999999999886544467999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++|.+..+ ...+..+.+ ..++|++++.+.|....
T Consensus 244 Vv~dPPr~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 244 VLVNPPRRG------IGKELCDYL-SQMAPRFILYSSCNAQT 278 (315)
T ss_pred EEECCCCCC------ccHHHHHHH-HHcCCCeEEEEECCccc
Confidence 999854221 223333333 44788888877776443
No 138
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.73 E-value=6.2e-08 Score=95.68 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=88.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
..++||.+=|=||..+.+.+.. +..+||.||++...++.|++++.++.. ...+++++++|+.+|++. .+++
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~-----~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGL-----DGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCC-----CccceeeehhhHHHHHHHHHhcCCc
Confidence 3789999999999999887752 335999999999999999999988764 367899999999999976 3569
Q ss_pred ccEEEEcCCCCCCCCCCcc--h---HHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLE--E---VATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~--t---~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+||+|.++=..-+.... . .+....+.+.|+|||++++-.....
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999755321121111 1 2456678899999999876444333
No 139
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.72 E-value=8e-08 Score=87.56 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. +.+|+++|++|++++.|++.+.... ...+++++++|+.+. +++||
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~----~~~fD 121 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRD------VAGNVEFEVNDLLSL----CGEFD 121 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC------CCCceEEEECChhhC----CCCcC
Confidence 35789999999999999999874 5699999999999999999875322 124799999998764 27899
Q ss_pred EEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|++ ++.. ..+.. .-.++++.+.+.+++++++.+
T Consensus 122 ~ii~~~~l~--~~~~~-~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 122 IVVCMDVLI--HYPAS-DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEEhhHHH--hCCHH-HHHHHHHHHHHHhCCCEEEEE
Confidence 9986 3322 11111 124578888888887766654
No 140
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.72 E-value=6e-08 Score=98.48 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=78.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-cccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~~~~~~yD 218 (345)
+.++||+||||+|.++..+.+. ..+|++||+++.+++.+++..+. .++++++.+|+... +...+++||
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~---------~~~i~~~~~d~~~~~~~~~~~~fD 105 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGH---------YKNVKFMCADVTSPDLNISDGSVD 105 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhcc---------CCceEEEEecccccccCCCCCCEE
Confidence 4568999999999999999876 35899999999999988774431 35789999999742 233467899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|++...-. .++.. ...++++.+++.|+|||.+++.
T Consensus 106 ~I~~~~~l~-~l~~~-~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 106 LIFSNWLLM-YLSDK-EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEehhhhHH-hCCHH-HHHHHHHHHHHhcCCCeEEEEE
Confidence 999854221 11111 1357899999999999999874
No 141
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.70 E-value=8.9e-08 Score=81.78 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=71.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+.++||+||||.|.++..+.+. +.+++++|+++.+++. ... ........ . ....+++|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~--~~~-------------~~~~~~~~--~-~~~~~~~f 79 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK--RNV-------------VFDNFDAQ--D-PPFPDGSF 79 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH--TTS-------------EEEEEECH--T-HHCHSSSE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh--hhh-------------hhhhhhhh--h-hhccccch
Confidence 467889999999999999999664 3499999999999998 110 11111111 1 12256899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|++-..- .+++ .-.++++.+.+.|+|||.+++......
T Consensus 80 D~i~~~~~l-~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 80 DLIICNDVL-EHLP---DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEEEESSG-GGSS---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hhHhhHHHH-hhcc---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999984211 1222 246899999999999999999888654
No 142
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.70 E-value=9e-08 Score=88.14 Aligned_cols=109 Identities=17% Similarity=0.097 Sum_probs=91.4
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcccE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD~ 219 (345)
.-+|+||||.|.....+++..|+..+.+||+...++..|-+.....+ -++++++.+||...+.. .+.+.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~-------l~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG-------LKNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC-------CCcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 46899999999999999999999999999999999999888775433 23899999999998876 3449999
Q ss_pred EEEcCCCCCCC----CCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVVDLFSEGKV----LPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~D~f~~~~~----p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|++.-.+++.= --.+...+|++.+.+.|+|||.+-+-.
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 99987776531 134889999999999999999996543
No 143
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.68 E-value=8.8e-08 Score=88.55 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=76.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.++|++||+|.|..+..+++.+|+.++++.|+ |+|++.+++ . +|++++.+|..+ ..+. +|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~---------~rv~~~~gd~f~---~~P~-~D 160 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----A---------DRVEFVPGDFFD---PLPV-AD 160 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----T---------TTEEEEES-TTT---CCSS-ES
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----c---------cccccccccHHh---hhcc-cc
Confidence 4567899999999999999999999999999999 999999998 1 589999999874 3345 99
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCC--cEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN--GRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg--Gvlvvn~ 257 (345)
+|++--.-+.. + .-.....++++++.|+|| |.+++.=
T Consensus 161 ~~~l~~vLh~~-~-d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 161 VYLLRHVLHDW-S-DEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ceeeehhhhhc-c-hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99984322211 1 123467899999999999 9877753
No 144
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.68 E-value=2e-07 Score=93.69 Aligned_cols=104 Identities=14% Similarity=0.095 Sum_probs=80.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+||++|||+|.++..+.+. ..+|++||+++.+++.|++++.... -.+++++.+|+.+++.. ...
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~-------~~nv~~~~~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNG-------IANVEFLAGTLETVLPKQPWAGQ 361 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhC-------CCceEEEeCCHHHHHHHHHhcCC
Confidence 34578999999999999998875 3589999999999999999886433 24799999999887643 245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+||+|++|....+ ...++++.+. .++|++++.+.|.
T Consensus 362 ~~D~vi~dPPr~G------~~~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 362 IPDVLLLDPPRKG------CAAEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred CCCEEEECcCCCC------CCHHHHHHHH-hcCCCEEEEEcCC
Confidence 7999999865432 2356777665 4899998766554
No 145
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.67 E-value=1.8e-07 Score=94.33 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..+||++|||+|.++..+++.. .+|+++|+++.+++.|+++..... -.+++++.+|+.+++.. .++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~-------~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNG-------LDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEEeChHHhhhhhhhhcC
Confidence 345789999999999999988763 699999999999999999875432 23699999999887642 246
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|++|..-.+ ..+.++.+.+ ++|++++.+.|..
T Consensus 367 ~fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 367 GFDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred CCCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEeCh
Confidence 7999999854321 1355555544 7999998888753
No 146
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=9.2e-08 Score=87.60 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=78.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC-------------------------
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT------------------------- 193 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~------------------------- 193 (345)
..++.+|+|||-.|.++..+++.+....|.+|||||..|+.|+++...+......
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999999998899999999999999999987654311000
Q ss_pred ----------CCCCcEEEEEcccccccccCCCcccEEEEcCCCCC-CCCCC-cchHHHHHHHHhccCCCcEEEEE
Q 038076 194 ----------ATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEG-KVLPQ-LEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 194 ----------~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~-~~p~~-l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+...+..+ +--+||......||+|+|=.-+.+ +.-.+ ---.+||+.+.++|.|||++++-
T Consensus 137 ~t~~~p~n~~f~~~n~vl---e~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVL---ESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEE---ecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00111111 111233335688999987332221 11111 12368999999999999999863
No 147
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.66 E-value=2.8e-07 Score=91.05 Aligned_cols=103 Identities=15% Similarity=0.022 Sum_probs=80.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+..+||++|||+|.++..+.. ++.+|++||+||..++.|+++..... -.+++++.+|+.+++....++||+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~-------~~~~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLG-------LDNLSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEECCHHHHHHhcCCCCCE
Confidence 457899999999999998885 35799999999999999999875433 237999999999887543456999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++|.+.. -...++++.+. .++|++++.+.|.
T Consensus 304 vi~DPPr~------G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 304 VLVNPPRR------GIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred EEECCCCC------CCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 99985432 13356666664 4899999887775
No 148
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=1.1e-07 Score=86.70 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=88.7
Q ss_pred hccccCCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc
Q 038076 134 SLPAIVPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 134 ~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~ 212 (345)
++.....++++++||.=+|..+...+...| +.+|+++|+|++-.+++.++-.... -+..++++++++.+-|.+
T Consensus 67 ~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag------v~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 67 MLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG------VDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc------ccceeeeeecchhhhHHH
Confidence 333345789999999988876666555544 6999999999999999987766554 367899999999988754
Q ss_pred -----CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 213 -----ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 213 -----~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
....||.+|+|++...+ . .+++.+.+.+++||+++++
T Consensus 141 l~~~~~~~tfDfaFvDadK~nY------~-~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVDADKDNY------S-NYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHhcCCCCceeEEEEccchHHH------H-HHHHHHHhhcccccEEEEe
Confidence 46889999999877543 2 7899999999999999985
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.64 E-value=1.2e-07 Score=93.88 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=82.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||+++||+|..+..+....+..+|+++|+||..++.++++..... -.+++++.+|+..++.. .++||+|+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~-------~~~~~v~~~Da~~~l~~-~~~fD~V~ 130 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG-------LENEKVFNKDANALLHE-ERKFDVVD 130 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCceEEEhhhHHHHHhh-cCCCCEEE
Confidence 58999999999999998776565699999999999999999886543 23467999999998754 56799999
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|.|.. ..+|++.+.+.++++|++.+.
T Consensus 131 lDP~Gs--------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 131 IDPFGS--------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ECCCCC--------cHHHHHHHHHHhcCCCEEEEE
Confidence 997621 247888878889999999887
No 150
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.63 E-value=2.3e-07 Score=80.59 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=90.8
Q ss_pred hHH-HHHhhccccCCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 127 SYW-DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 127 ~Y~-~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
+|+ +.|+..........||++|.|+|.+++.++++ .+...++.+|.|++.+..-.+.|. .++++.|
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------------~~~ii~g 101 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------------GVNIING 101 (194)
T ss_pred HHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------------Ccccccc
Confidence 344 44544433345668999999999999999986 456899999999999999888763 3569999
Q ss_pred cccccc---c-cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 205 DVFSPS---E-DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 205 Da~~~l---~-~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
|+.+.- . .....||.||+.+.-- .+|.+ .+.+.++.+..+|..||.++.-..++
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll-~~P~~-~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLL-NFPMH-RRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccc-cCcHH-HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 998742 1 2567899999866443 23333 57789999999999999998765553
No 151
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.59 E-value=2.6e-07 Score=84.30 Aligned_cols=101 Identities=15% Similarity=0.153 Sum_probs=70.0
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+.+. +.+++++|+++.+++.|++.+.... ...+++++.+|. . ...+.||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~-~---~~~~~fD 129 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAG------LAGNITFEVGDL-E---SLLGRFD 129 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC------CccCcEEEEcCc-h---hccCCcC
Confidence 35678999999999999998875 3579999999999999999885332 125789999993 2 2457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
+|++...-. ..+.. .....++.+.+.+++++++
T Consensus 130 ~v~~~~~l~-~~~~~-~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 130 TVVCLDVLI-HYPQE-DAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EEEEcchhh-cCCHH-HHHHHHHHHHhhcCCeEEE
Confidence 998732110 11111 2245667777766544443
No 152
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.54 E-value=2.2e-07 Score=82.83 Aligned_cols=99 Identities=16% Similarity=0.129 Sum_probs=73.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..|||+||||.|.+..+|.+. .+.+..+||||++-+..|.+. .+.++++|.-+-|.. .+++|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r--------------Gv~Viq~Dld~gL~~f~d~sF 76 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR--------------GVSVIQGDLDEGLADFPDQSF 76 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc--------------CCCEEECCHHHhHhhCCCCCc
Confidence 45689999999999999998875 589999999999988888764 367999999998864 78999
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|.||+. ..+..-....+.++ +.|+=|...++.+.+
T Consensus 77 D~VIls----qtLQ~~~~P~~vL~---EmlRVgr~~IVsFPN 111 (193)
T PF07021_consen 77 DYVILS----QTLQAVRRPDEVLE---EMLRVGRRAIVSFPN 111 (193)
T ss_pred cEEehH----hHHHhHhHHHHHHH---HHHHhcCeEEEEecC
Confidence 999983 12111112234444 445556666666654
No 153
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=7.9e-07 Score=78.90 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=73.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.+.|+++|||+|.++...+- +...+|.+||+||+.+++++++..- + ..++.++++|..++ ..++|.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~--l------~g~v~f~~~dv~~~----~~~~dt 111 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEE--L------LGDVEFVVADVSDF----RGKFDT 111 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHh--h------CCceEEEEcchhhc----CCccce
Confidence 567899999999999987764 4668999999999999999998753 1 56899999999987 678999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhcc
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRL 247 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L 247 (345)
++++.+-+.. -.+ .+.+|++.+.+.-
T Consensus 112 vimNPPFG~~-~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 112 VIMNPPFGSQ-RRH-ADRPFLLKALEIS 137 (198)
T ss_pred EEECCCCccc-ccc-CCHHHHHHHHHhh
Confidence 9987644322 223 6778888776654
No 154
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.54 E-value=1.5e-07 Score=84.06 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~ 215 (345)
.+..++|++-+|+|+++.+.+.+ ...+|+.||.|+..++..+++...-.. ..+.+++.+|+..++.. ..+
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~------~~~~~v~~~d~~~~l~~~~~~~~ 113 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGL------EDKIRVIKGDAFKFLLKLAKKGE 113 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-------GGGEEEEESSHHHHHHHHHHCTS
T ss_pred cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCC------CcceeeeccCHHHHHHhhcccCC
Confidence 45789999999999999998875 568999999999999999988753221 34799999999988854 478
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHH--hccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLK--DRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~--~~L~pgGvlvvn~~~~~ 261 (345)
+||+|++|.+-.. ...-.+.++.+. ..|+++|++++-.....
T Consensus 114 ~fDiIflDPPY~~----~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~~ 157 (183)
T PF03602_consen 114 KFDIIFLDPPYAK----GLYYEELLELLAENNLLNEDGLIIIEHSKKE 157 (183)
T ss_dssp -EEEEEE--STTS----CHHHHHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred CceEEEECCCccc----chHHHHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence 9999999853221 111256777766 77999999999887654
No 155
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.53 E-value=8.4e-07 Score=85.67 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++.+||+||||+|.++..+.+. +.+|+++|+++.|++.|++........ .....++++..+|..+. +++||+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~--~~~~~~~~f~~~Dl~~l----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAA--LPPEVLPKFEANDLESL----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccc--cccccceEEEEcchhhc----CCCcCE
Confidence 4579999999999999999874 579999999999999999886421100 00134678888887543 578999
Q ss_pred EEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 220 IVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 220 Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|++ |... ++|.. .-.++++.++ .+.++|+++
T Consensus 216 Vv~~~vL~--H~p~~-~~~~ll~~l~-~l~~g~liI 247 (315)
T PLN02585 216 VTCLDVLI--HYPQD-KADGMIAHLA-SLAEKRLII 247 (315)
T ss_pred EEEcCEEE--ecCHH-HHHHHHHHHH-hhcCCEEEE
Confidence 986 2221 12221 1234566665 456776655
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.50 E-value=1.9e-07 Score=84.49 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=76.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+...|+++-||-|.++..++++.+...|.++|++|..++..++...+... +.++.++.+|+++++. ...+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv------~~~i~~~~~D~~~~~~--~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV------ENRIEVINGDAREFLP--EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-------TTTEEEEES-GGG-----TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC------CCeEEEEcCCHHHhcC--cccc
Confidence 3567899999999999999998876778999999999999999998876653 5689999999999986 7899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|-|+++.+. .+.+|+..+.+.+++||++-
T Consensus 171 drvim~lp~--------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPE--------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence 999996533 34579999999999999873
No 157
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.49 E-value=1.2e-06 Score=83.92 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=73.6
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+..+||+||||.|.++..+++. ..+++++|+|+.+++.+++.+.... ..++++++.+|+.++ ....|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~------~~~~v~ii~~Dal~~---~~~~~ 102 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSP------LASKLEVIEGDALKT---EFPYF 102 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcC------CCCcEEEEECCHhhh---ccccc
Confidence 345678999999999999999875 4689999999999999999875321 146899999999875 23578
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvvn 256 (345)
|.|+.++ |....+...++.+...- -...+++++
T Consensus 103 d~VvaNl------PY~Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 103 DVCVANV------PYQISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred CEEEecC------CcccCcHHHHHHHhcCCCCceeeeeeh
Confidence 9988643 44445556666654322 224455553
No 158
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=2e-06 Score=80.24 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE----EcccccccccCCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH----IGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~----~gDa~~~l~~~~~ 215 (345)
.+..+|++|||+|.++..+++..|..++++||.++..+.+|.++.....+ ..++.++ .+|...-.+...+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l------~g~i~v~~~~me~d~~~~~~l~~~ 221 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL------SGRIEVIHNIMESDASDEHPLLEG 221 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh------cCceEEEecccccccccccccccC
Confidence 45579999999999999999999999999999999999999987753332 4677777 4455444333568
Q ss_pred cccEEEEcCCCC---CC----------CC-CCc--------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSE---GK----------VL-PQL--------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~---~~----------~p-~~l--------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++|+|+++..-- +. .| ..| .-..++..+.++|.|||.+.+++.....
T Consensus 222 ~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~ 290 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKE 290 (328)
T ss_pred ceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccccc
Confidence 999999864221 00 00 000 1234677889999999999999986654
No 159
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.49 E-value=2.4e-08 Score=90.77 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=80.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~yD~ 219 (345)
-+++|+||||+|-.+..+... ..++++|||+..|++.|.+.-.+. ++.++|+..|++ .++++||+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~YD------------~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGLYD------------TLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred cceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccchH------------HHHHHHHHHHhhhccCCcccc
Confidence 478999999999999988865 468999999999999999865433 467789999997 57899999
Q ss_pred EEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.. |+.. + ...| ..+|..+...|+|||.+++.+-..+.
T Consensus 192 i~AaDVl~--Y-lG~L--e~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 192 IVAADVLP--Y-LGAL--EGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred hhhhhHHH--h-hcch--hhHHHHHHHhcCCCceEEEEecccCC
Confidence 985 3322 1 1111 34788899999999999998876554
No 160
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.47 E-value=4.1e-07 Score=91.74 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=72.1
Q ss_pred CCCEEEEeecccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLW----PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.|+++|+|.|.+....++.. ...+|.+||-+|..+...++.....+ -+.+++++.+|.+++ ..+++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~------w~~~V~vi~~d~r~v--~lpek 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG------WGDKVTVIHGDMREV--ELPEK 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT------TTTTEEEEES-TTTS--CHSS-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC------CCCeEEEEeCcccCC--CCCCc
Confidence 3569999999999987766532 34899999999987766544321112 146899999999998 35779
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.|+||...-.. ....-...|.+....+.|+|||+++
T Consensus 259 vDIIVSElLGs--fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 259 VDIIVSELLGS--FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEEE---BT--TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eeEEEEeccCC--ccccccCHHHHHHHHhhcCCCCEEe
Confidence 99999866542 2222256788988999999999986
No 161
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.46 E-value=2.6e-06 Score=86.37 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=89.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++.+||++++|.|.=+.+++.... ...|+++|+++.-++..++++.--. -.++.+...|++.+....++.|
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G-------~~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG-------VSNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC-------CCeEEEEeCchhhhhhhchhhc
Confidence 4568899999999998888887654 3799999999999999887764222 2468899999998654456789
Q ss_pred cEEEEcCCCCCC-C----CCCc-------------chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-V----LPQL-------------EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-~----p~~l-------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|.|++|++..+. + |... ...+.+..+.+.|+|||+++....+...
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 999999987643 1 1111 2367888999999999999877666554
No 162
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.46 E-value=6.5e-07 Score=88.36 Aligned_cols=101 Identities=12% Similarity=0.027 Sum_probs=85.3
Q ss_pred CCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-+||++.+|+|..+..+++..+ ..+|+++|+||..++.++++..+.. -.+++++.+|+..++....++||+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~-------~~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS-------VENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEchhHHHHHHHhCCCCCEE
Confidence 4799999999999999887643 4799999999999999999886543 2368999999999987666789999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
++|.|.. ..+|++.+.+.++++|++.+.+
T Consensus 119 dlDPfGs--------~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 119 DIDPFGT--------PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred EeCCCCC--------cHHHHHHHHHhcccCCEEEEEe
Confidence 9998642 1369999999999999998874
No 163
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.4e-07 Score=80.15 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=87.4
Q ss_pred HHHHHhhcc-ccCCCCCEEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCC---CCCCCCCcEEE
Q 038076 128 YWDEFVSLP-AIVPNGPIAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLE---KPTATGGVLQV 201 (345)
Q Consensus 128 Y~~~~~~l~-~~~~p~~VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~---~~~~~~~rv~v 201 (345)
|..+|..|- .+.+..+.|++|.|+|.++..+...- ++...++||.-|++++.++++....-.+ -.-++.+++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 444444442 34567899999999999998887653 3455699999999999999877532210 11245789999
Q ss_pred EEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 202 HIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 202 ~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
++||+|.- .....+||.|.+-+-.+ +.-+.+...|++||.+++-+.
T Consensus 149 vvGDgr~g-~~e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 149 VVGDGRKG-YAEQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EeCCcccc-CCccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEeec
Confidence 99999985 34678999999965332 234566778999999988766
No 164
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.45 E-value=1.9e-06 Score=79.28 Aligned_cols=118 Identities=10% Similarity=-0.007 Sum_probs=84.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCC-----CCCCCCCCCcEEEEEcccccccc--c
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD-----LEKPTATGGVLQVHIGDVFSPSE--D 212 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-----~~~~~~~~~rv~v~~gDa~~~l~--~ 212 (345)
+..+||+.|||.|.-+.+|++. +.+|++||++|..++.+.+-.++.. .....+...+++++++|..++-. .
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4579999999999999999874 6789999999999999876443321 00112335689999999999732 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
...+||+|+--.+- ..+|++ ....+.+.+.+.|+|||.++.-+...+
T Consensus 121 ~~~~fD~VyDra~~-~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 121 NLPVFDIWYDRGAY-IALPND-LRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred ccCCcCeeeeehhH-hcCCHH-HHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 23689998742222 134443 456789999999999998776554333
No 165
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.44 E-value=1.1e-06 Score=86.14 Aligned_cols=101 Identities=12% Similarity=0.082 Sum_probs=76.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-------
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA------- 213 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~------- 213 (345)
+.+||++|||+|+++..+.+.. .+|++||+++++++.|+++..... -.+++++.+|+.+++...
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANN-------IDNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcC-------CCcEEEEEcCHHHHHHHHhhccccc
Confidence 3579999999999999888764 489999999999999999886443 236999999999987531
Q ss_pred --C------CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 214 --S------GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 214 --~------~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
. .+||+|++|.+..+ ...++++.+.+ |++++.+.|..
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR~G------~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPRAG------LDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred cccccccccCCCCEEEECCCCCC------CcHHHHHHHHc---CCcEEEEEcCH
Confidence 1 24899999975432 23456666544 78888877763
No 166
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.44 E-value=6.9e-06 Score=79.43 Aligned_cols=180 Identities=12% Similarity=0.053 Sum_probs=100.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEE-cccccccc---cCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHI-GDVFSPSE---DAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~-gDa~~~l~---~~~ 214 (345)
+..++|+||||+|.+...+....++.+++++||||..++.|++..... .+ ..+++++. .|...... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l------~~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL------NGAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC------cCcEEEEEccchhhhhhcccccC
Confidence 457899999999988877777777899999999999999999988654 22 45788865 34333322 246
Q ss_pred CcccEEEEcCCCCCCCCC-CcchHHHHH----------------HHHhccCCCcEEEEEecCCCCCCc-cccCCCCCCCc
Q 038076 215 GRYAGIVVDLFSEGKVLP-QLEEVATWL----------------KLKDRLMPNGRFMVNCGGIDGVSD-MTYGAARPKSM 276 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~-~l~t~ef~~----------------~~~~~L~pgGvlvvn~~~~~~~~~-~~~g~~~~~~~ 276 (345)
++||+|++..+-..+... ...+..-.+ ...+++.+||.+.+-......... .....|+.++-
T Consensus 188 ~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv 267 (321)
T PRK11727 188 ERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLV 267 (321)
T ss_pred CceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEe
Confidence 789999996422111000 000111122 233456677775432221111000 11223444432
Q ss_pred cchHHHHHHHHHHHHHCCCCEEEEEecCCC-CceEEEEeC-CCCCchhhhh
Q 038076 277 NDVWMHNSAIRALSEAFPGKVSWKRMPERN-GENFLALTG-LLPDLSSWSA 325 (345)
Q Consensus 277 d~~~~~~~~~~~l~~~F~~~v~~~~~~~~~-~~n~v~~a~-~~p~~~~~~~ 325 (345)
-+..-++.+++.|++.=-..+.+.++..+. ...+++.+- +.+....|..
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~vaWsf~~~~~~~~~~~ 318 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWTFLDDEQRRRWVN 318 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEEEEeCCCeeeEEEEeecCCHHHhHHHHH
Confidence 222347788888887633355555655432 233344432 2233445543
No 167
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.43 E-value=8.4e-07 Score=84.39 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=80.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.+.++||.+=+=+|+++.+.+. .+..+|+.||++...++.|++++.++.. ...+++++.+|+.+|++. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~-----~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGL-----DLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT------CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CccceEEEecCHHHHHHHHhcCCC
Confidence 3578999999999999988775 2446899999999999999999987653 246899999999999864 4579
Q ss_pred ccEEEEcCCCCCCCCCCcc--hHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLE--EVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~--t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
||+||+|.++-..-...+. -.+.+..+.+.|+|||.+++...+..
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 9999999754211011111 12456678888999999875544433
No 168
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.43 E-value=1.2e-06 Score=86.22 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=76.8
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-------- 213 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-------- 213 (345)
.++|+++||+|+++..+.+.. .+|++||+++.+++.|+++..... -.+++++.+|+.++++..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~-------~~~v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANG-------IDNVQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhC-------CCcEEEEECCHHHHHHHHhhcccccc
Confidence 579999999999999887753 589999999999999999875443 237999999999987531
Q ss_pred -------CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 214 -------SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 214 -------~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..+||+|++|.+..+ ...+.++.+.+ |++++.+.|..
T Consensus 279 ~~~~~~~~~~~D~v~lDPPR~G------~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 279 LKGIDLKSYNFSTIFVDPPRAG------LDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cccccccCCCCCEEEECCCCCC------CcHHHHHHHHc---cCCEEEEEeCH
Confidence 225999999965421 33556666654 78888877764
No 169
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.42 E-value=3.8e-06 Score=76.19 Aligned_cols=127 Identities=15% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.=||+||||+|..+..+.. ++-...+|||+|.|+++|.+.- +. -.++.+|.-+-+...++.||.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e-~e-----------gdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERE-LE-----------GDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred CcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhh-hh-----------cCeeeeecCCCCCCCCCccceE
Confidence 56699999999999988765 5689999999999999998721 11 3477788888787789999988
Q ss_pred EE--------cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHH
Q 038076 221 VV--------DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEA 292 (345)
Q Consensus 221 i~--------D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~ 292 (345)
|+ .+....+.| ..--..||..+...|++|+..++++...... +.-.-+-++++.-
T Consensus 117 ISISAvQWLcnA~~s~~~P-~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~----------------q~d~i~~~a~~aG 179 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVP-KKRLLRFFGTLYSCLKRGARAVLQFYPENEA----------------QIDMIMQQAMKAG 179 (270)
T ss_pred EEeeeeeeecccCccccCh-HHHHHHHhhhhhhhhccCceeEEEecccchH----------------HHHHHHHHHHhhc
Confidence 74 222222222 2223468999999999999999998855541 2333455677888
Q ss_pred CCCCEE
Q 038076 293 FPGKVS 298 (345)
Q Consensus 293 F~~~v~ 298 (345)
|.+-+.
T Consensus 180 F~GGlv 185 (270)
T KOG1541|consen 180 FGGGLV 185 (270)
T ss_pred cCCcee
Confidence 987654
No 170
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.41 E-value=8e-07 Score=81.49 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=79.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCC-CCC----CCCCCCcEEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSD-LEK----PTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-~~~----~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
.++.+||+.|||.|.-..+|.+. +.+|++||++|..++.+.+.-+..+ ... ..+...+++++.+|..++-...
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 44679999999999999999985 6799999999999999854333211 000 1134678999999999964444
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
.++||+|+=-.+- ..+|+. ...++.+.+++.|+|||.+
T Consensus 114 ~g~fD~iyDr~~l-~Alpp~-~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 114 VGKFDLIYDRTFL-CALPPE-MRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp HHSEEEEEECSST-TTS-GG-GHHHHHHHHHHCEEEEEEE
T ss_pred cCCceEEEEeccc-ccCCHH-HHHHHHHHHHHHhCCCCcE
Confidence 4589999842222 234443 5678899999999999993
No 171
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.41 E-value=7e-07 Score=81.11 Aligned_cols=108 Identities=21% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...++|+.|+|-|.+++.++-.. -.+|+.||..+..++.|+++++-.. ..-.+++..-..+|-. .+.+||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-------~~v~~~~~~gLQ~f~P-~~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-------PRVGEFYCVGLQDFTP-EEGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-------CCEEEEEES-GGG-----TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-------CCcceEEecCHhhccC-CCCcEeE
Confidence 35789999999999999876432 3799999999999999999987411 2335556565556632 3579999
Q ss_pred EEEcCCCCCCCCCCcch---HHHHHHHHhccCCCcEEEE--EecCCC
Q 038076 220 IVVDLFSEGKVLPQLEE---VATWLKLKDRLMPNGRFMV--NCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t---~ef~~~~~~~L~pgGvlvv--n~~~~~ 261 (345)
|.+- -...||.+ .+|++.|++.|+|||++++ |+....
T Consensus 126 IW~Q-----W~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~ 167 (218)
T PF05891_consen 126 IWIQ-----WCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG 167 (218)
T ss_dssp EEEE-----S-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred EEeh-----HhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence 9983 22344544 4689999999999999998 776544
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.40 E-value=4.2e-06 Score=78.55 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=63.2
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
+.+.......+..+||+||||.|.++..+.+. ..++++||+|+.+++.+++.+.. .++++++++|+.++
T Consensus 19 ~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---------~~~v~ii~~D~~~~ 87 (258)
T PRK14896 19 DRIVEYAEDTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---------AGNVEIIEGDALKV 87 (258)
T ss_pred HHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---------CCCEEEEEeccccC
Confidence 33333333345689999999999999999986 46899999999999999998742 35899999999875
Q ss_pred cccCCCcccEEEEcC
Q 038076 210 SEDASGRYAGIVVDL 224 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~ 224 (345)
- -..||.|+..+
T Consensus 88 ~---~~~~d~Vv~Nl 99 (258)
T PRK14896 88 D---LPEFNKVVSNL 99 (258)
T ss_pred C---chhceEEEEcC
Confidence 2 24589998754
No 173
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.38 E-value=3.2e-06 Score=79.98 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=57.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||+|.++..+++..+ +|+++|+|+.+++.+++.+. +++++++++|+.++- -.+..+|
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~----------~~~v~~i~~D~~~~~-~~~~~~~ 107 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA----------EDNLTIIEGDALKVD-LSELQPL 107 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc----------cCceEEEEChhhcCC-HHHcCcc
Confidence 4567899999999999999998753 89999999999999998763 257999999999862 1111157
Q ss_pred EEEEc
Q 038076 219 GIVVD 223 (345)
Q Consensus 219 ~Ii~D 223 (345)
.|+..
T Consensus 108 ~vv~N 112 (272)
T PRK00274 108 KVVAN 112 (272)
T ss_pred eEEEe
Confidence 77763
No 174
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.37 E-value=2.2e-06 Score=76.28 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=86.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc--
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR-- 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~-- 216 (345)
.+..++|++=+|+|+++.+.+.+ ...+++.||.|.....+.+++...-+ ...+.+++.+|+..+|+....+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~------~~~~~~~~~~da~~~L~~~~~~~~ 114 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALG------LEGEARVLRNDALRALKQLGTREP 114 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhC------CccceEEEeecHHHHHHhcCCCCc
Confidence 45789999999999999999975 46899999999999999999875332 2478999999999998776655
Q ss_pred ccEEEEcCCCCCCCCCCcch-HHHHHH--HHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEE-VATWLK--LKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t-~ef~~~--~~~~L~pgGvlvvn~~~~~ 261 (345)
||+|++|.+-.. .+.. ...+.. -...|+|+|.+++-.....
T Consensus 115 FDlVflDPPy~~----~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 115 FDLVFLDPPYAK----GLLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred ccEEEeCCCCcc----chhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 999999964332 2221 223333 3456999999998776543
No 175
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.34 E-value=1e-06 Score=80.86 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=80.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
+.++++|||.|-.++.+..++ .+|+++|+++.|+++|++++.... .+-..++...|...++. .+++.|+|+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y------~~t~~~ms~~~~v~L~g-~e~SVDlI~ 105 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTY------CHTPSTMSSDEMVDLLG-GEESVDLIT 105 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCccc------ccCCccccccccccccC-CCcceeeeh
Confidence 378999999998888888764 589999999999999999986442 34456666677777653 488999999
Q ss_pred EcCCCCCCCCCC-cchHHHHHHHHhccCCCc-EEEEEecCCC
Q 038076 222 VDLFSEGKVLPQ-LEEVATWLKLKDRLMPNG-RFMVNCGGID 261 (345)
Q Consensus 222 ~D~f~~~~~p~~-l~t~ef~~~~~~~L~pgG-vlvvn~~~~~ 261 (345)
+-= ..| +.-.+||+.+++.|+++| ++++++...+
T Consensus 106 ~Aq------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd 141 (261)
T KOG3010|consen 106 AAQ------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDD 141 (261)
T ss_pred hhh------hHHhhchHHHHHHHHHHcCCCCCEEEEEEccCC
Confidence 721 122 234689999999998766 8988887643
No 176
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=7.4e-06 Score=76.67 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=74.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC--c
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG--R 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~--~ 216 (345)
.+..+|++||.|.|.++..|++. ..+|++||||+.+++.-++.+.. .++++++++|+.++ +-++ .
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~---------~~n~~vi~~DaLk~--d~~~l~~ 95 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFAP---------YDNLTVINGDALKF--DFPSLAQ 95 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhccc---------ccceEEEeCchhcC--cchhhcC
Confidence 34678999999999999999986 46799999999999999998862 46899999999986 2222 6
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC-CcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP-NGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p-gGvlvv 255 (345)
++.|+.. +|....|.=.+..+.....+ ..++++
T Consensus 96 ~~~vVaN------lPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 96 PYKVVAN------LPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCEEEEc------CCCcccHHHHHHHHhccCccceEEEEe
Confidence 7888864 35555555566666666665 444444
No 177
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.31 E-value=2e-06 Score=75.84 Aligned_cols=111 Identities=17% Similarity=0.207 Sum_probs=77.6
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.+||+||||-|.+...|++.--...+++||.++..+++|+.--.-.+ ....+++.+.|..+- ....++||+|.
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~------~~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG------FSNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC------CCcceeEEEeeccCC-cccccceeEEe
Confidence 49999999999999999875223569999999999999986553222 133488989898774 34577888886
Q ss_pred E----cCCCC--CCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 222 V----DLFSE--GKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 222 ~----D~f~~--~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
- |+-+- ..+-..+ .-++..+.+.|+|||++++.-.+-.
T Consensus 142 DKGT~DAisLs~d~~~~r~--~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRL--VVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred ecCceeeeecCCCCcccce--eeehhhHhhccCCCcEEEEEecCcc
Confidence 2 33221 1111111 3467788899999999987655444
No 178
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.31 E-value=7.3e-06 Score=76.59 Aligned_cols=86 Identities=21% Similarity=0.230 Sum_probs=64.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..+||+||||.|.++..+++..+ +++++|+|+.+++.+++.+.. .++++++++|+.++- ...||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~---------~~~v~v~~~D~~~~~---~~~~d 93 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL---------YERLEVIEGDALKVD---LPDFP 93 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc---------CCcEEEEECchhcCC---hhHcC
Confidence 4567899999999999999998754 699999999999999988742 367999999998753 22566
Q ss_pred ---EEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 219 ---GIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 219 ---~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
.|+.. +|.+ .+.+.+..+.+
T Consensus 94 ~~~~vvsN------lPy~-i~~~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSN------LPYN-ISSPLIFKLLE 116 (253)
T ss_pred CcceEEEc------CChh-hHHHHHHHHhc
Confidence 66653 3433 34455555554
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.4e-05 Score=69.05 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=94.9
Q ss_pred CCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++=+++||||+|....+|.+. -|+....+.||||...+..++-.... +-++.++..|..+-++. ++.|+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n--------~~~~~~V~tdl~~~l~~--~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN--------RVHIDVVRTDLLSGLRN--ESVDV 113 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc--------CCccceeehhHHhhhcc--CCccE
Confidence 667999999999999998875 46788999999999999877655432 45688999999988865 99999
Q ss_pred EEEcCCCCCCCCCC---c-----------------chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 220 IVVDLFSEGKVLPQ---L-----------------EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 220 Ii~D~f~~~~~p~~---l-----------------~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
++.. ++++|.. . .+..++..+...|+|.|++.++......
T Consensus 114 LvfN---PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~----------------- 173 (209)
T KOG3191|consen 114 LVFN---PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK----------------- 173 (209)
T ss_pred EEEC---CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC-----------------
Confidence 9864 3333211 1 1456777888999999999988876654
Q ss_pred HHHHHHHHHHHHH-CCCCEEEEE
Q 038076 280 WMHNSAIRALSEA-FPGKVSWKR 301 (345)
Q Consensus 280 ~~~~~~~~~l~~~-F~~~v~~~~ 301 (345)
.+++++.+++- |...+.+.+
T Consensus 174 --p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 --PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred --HHHHHHHHhhcccceeEEEEE
Confidence 46777766544 554444433
No 180
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.25 E-value=4.3e-06 Score=74.83 Aligned_cols=92 Identities=15% Similarity=0.067 Sum_probs=65.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~y 217 (345)
.+..+||+||||+|.++..+.+. ...+++++|+++++++.|++. +++++.+|+.+.+. ..+++|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~--------------~~~~~~~d~~~~l~~~~~~sf 76 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVAR--------------GVNVIQGDLDEGLEAFPDKSF 76 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHc--------------CCeEEEEEhhhcccccCCCCc
Confidence 35679999999999999888764 456889999999999998651 25688888876543 346789
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP 249 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p 249 (345)
|+|++...-. +++ ...++++++.+.+++
T Consensus 77 D~Vi~~~~l~-~~~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 77 DYVILSQTLQ-ATR---NPEEILDEMLRVGRH 104 (194)
T ss_pred CEEEEhhHhH-cCc---CHHHHHHHHHHhCCe
Confidence 9999843111 111 234677777766553
No 181
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.21 E-value=6.4e-06 Score=72.74 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=68.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--c-cCC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--E-DAS 214 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~-~~~ 214 (345)
..++++||+||+|+|..+..+.+..+..+|+.-|.++ +++..+.+...... ...+++++..-|=-+-+ . ..+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~----~~~~~v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS----LLDGRVSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HHHHHHS-
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc----cccccccCcEEEecCccccccccc
Confidence 3567899999999999998888765678999999999 99988887754320 12456777665422211 0 135
Q ss_pred CcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 215 GRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 215 ~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.+||+|+. |+.-. +-.-..+++.+.+.|+++|.+++.....
T Consensus 118 ~~~D~IlasDv~Y~-----~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 118 HSFDVILASDVLYD-----EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SSBSEEEEES--S------GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccCCEEEEecccch-----HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 68999986 54221 1244678899999999999866665544
No 182
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.17 E-value=2.6e-05 Score=74.26 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHH---HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILID---KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~---~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
..++||+||||.|...-.+++. ....|.++|.++...- .++++.+. +.++ .....+.+.+.. .+.
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~---------~~~~-~~lplgvE~Lp~-~~~ 182 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ---------DPPV-FELPLGVEDLPN-LGA 182 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC---------CccE-EEcCcchhhccc-cCC
Confidence 5789999999999999877765 4478999999888765 34555542 2222 233456666665 788
Q ss_pred ccEEEEcCCCCCCCCCCcc-hHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLE-EVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~-t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+||+= ++..|.. -.+.+.++++.|+|||.+++.....+.
T Consensus 183 FDtVF~M-----GVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g 224 (315)
T PF08003_consen 183 FDTVFSM-----GVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG 224 (315)
T ss_pred cCEEEEe-----eehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence 9999972 2333322 247899999999999999987554443
No 183
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.16 E-value=9.4e-07 Score=71.13 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=47.1
Q ss_pred EEEeecccHHHHHHHHhCCC---CEEEEEECCHH---HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC-Ccc
Q 038076 145 AIYGLGGGTAAHLMLDLWPS---LKLEGWEIDEI---LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS-GRY 217 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~---~~v~~VEidp~---vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~-~~y 217 (345)
|+||...|..+..+++..+. .++++||..+. .-+..++ .+ ...+++++.+|..+++..-. +++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~---------~~~~~~~~~g~s~~~l~~~~~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AG---------LSDRVEFIQGDSPDFLPSLPDGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------GG---------G-BTEEEEES-THHHHHHHHH--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cC---------CCCeEEEEEcCcHHHHHHcCCCCE
Confidence 57998888888777765443 37999999995 3333333 11 24579999999999887644 899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+|++|+.... -.....++.+.++|+|||+++++
T Consensus 71 dli~iDg~H~~-----~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 71 DLIFIDGDHSY-----EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEEEES---H-----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEECCCCCH-----HHHHHHHHHHHHHcCCCeEEEEe
Confidence 99999974321 14456789999999999999875
No 184
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.15 E-value=5.7e-06 Score=87.53 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=79.7
Q ss_pred CCCEEEEeecccHHHHHHHHhC-------C-----CCEEEEEECCHH---HHH-----------HHHHhcC-CCCCC---
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLW-------P-----SLKLEGWEIDEI---LID-----------KVRDYFG-LSDLE--- 190 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~-------p-----~~~v~~VEidp~---vi~-----------~A~~~f~-~~~~~--- 190 (345)
.-+|+++|.|+|.......+.+ | ..++..+|.+|. -+. ++++... .+...
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3579999999998655555333 3 369999998762 221 1111110 01100
Q ss_pred -CCCCCCC--cEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 191 -KPTATGG--VLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 191 -~~~~~~~--rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+..+.+. +++++.||+++.+.....++|+|++|.|++.. .+++.+.++|..++++++|||+++.-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAK-NPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCcc-ChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 0011222 56789999999988777789999999999754 46789999999999999999999854
No 185
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.13 E-value=1.3e-05 Score=75.92 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCCEEEEeecccHHHHHHHH--hCCCCEEEEEECCHHHHHHHHHhcC-CCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLD--LWPSLKLEGWEIDEILIDKVRDYFG-LSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~--~~p~~~v~~VEidp~vi~~A~~~f~-~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.|++|+.||+|.=-++..+.. +.++..|+++|+||+.++.|++-.. ..+ -+.+++++.+|+.+.- ..-..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~------L~~~m~f~~~d~~~~~-~dl~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG------LSKRMSFITADVLDVT-YDLKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H------H-SSEEEEES-GGGG--GG---
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc------ccCCeEEEecchhccc-ccccc
Confidence 467999999997755554443 3467899999999999999998765 222 2578999999998752 23478
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHH--HHHHHCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIR--ALSEAFP 294 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~--~l~~~F~ 294 (345)
||+|++-+.-+. ..-...+.++.+.++++||..+++=....-. .++..... .++ -|.
T Consensus 193 ~DvV~lAalVg~---~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR-----------------~~LYp~vd~~~l~-gf~ 251 (276)
T PF03059_consen 193 YDVVFLAALVGM---DAEPKEEILEHLAKHMAPGARLVVRSAHGLR-----------------SFLYPVVDPEDLR-GFE 251 (276)
T ss_dssp -SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--GGG-----------------GGSS----TGGGT-TEE
T ss_pred CCEEEEhhhccc---ccchHHHHHHHHHhhCCCCcEEEEecchhhH-----------------HHcCCCCChHHCC-CeE
Confidence 999998654431 1224578999999999999999875322211 11111111 112 333
Q ss_pred CCEEEEEecCCCCceEEEEeCCCCC
Q 038076 295 GKVSWKRMPERNGENFLALTGLLPD 319 (345)
Q Consensus 295 ~~v~~~~~~~~~~~n~v~~a~~~p~ 319 (345)
+...--|...-.|.++++.+.+.
T Consensus 252 --~~~~~hP~~~ViNSvv~~rk~~~ 274 (276)
T PF03059_consen 252 --VLAVVHPTDEVINSVVFARKKQV 274 (276)
T ss_dssp --EEEEE---TT---EEEEE-----
T ss_pred --EEEEECCCCCceeEEEEEEeccc
Confidence 43334466667789999887653
No 186
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.13 E-value=1.2e-05 Score=82.56 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=86.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
...-+|+||||.|.....+++.+|+..+.+||+....+..+-+.....+ -.++.++.+|+..+... .+.+.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~-------l~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN-------ITNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC-------CCeEEEEcCCHHHHHHhcCccccc
Confidence 3456999999999999999999999999999999998877665542222 34788999987654333 457899
Q ss_pred EEEEcCCCCCC----CCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGK----VLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~----~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|++-.++++. .--.+.+.+|++.+.+.|+|||.+-+
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 99998777752 22448899999999999999999853
No 187
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.11 E-value=1.8e-05 Score=71.63 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=82.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
.+..+||.+|.|-|.+...+.++.|. +=..+|-+|+|.+.-|++-... ..+|.+..|-=.+.+.+ .++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~e--------k~nViil~g~WeDvl~~L~d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWRE--------KENVIILEGRWEDVLNTLPDKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccccc--------ccceEEEecchHhhhccccccCc
Confidence 57899999999999999999887664 4566999999999998876432 45677776633333333 45679
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE-EecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV-NCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv-n~~~~~ 261 (345)
|-|+-|.|++.+ -.+.+|++.+-+.|||+|++.. |..+.+
T Consensus 171 DGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 171 DGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred ceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 999999887532 2467899999999999999863 444333
No 188
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.10 E-value=1e-05 Score=77.41 Aligned_cols=77 Identities=22% Similarity=0.266 Sum_probs=64.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC--
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-- 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-- 215 (345)
.+...+++.+||.|..+..+++..| ..+|+++|+||++++.|++.+.- ..|++++++|..++....++
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---------CCcEEEEeCCHHHHHHHHHcCC
Confidence 3456899999999999999998875 68999999999999999987631 25899999999998644333
Q ss_pred -cccEEEEcC
Q 038076 216 -RYAGIVVDL 224 (345)
Q Consensus 216 -~yD~Ii~D~ 224 (345)
++|.|++|+
T Consensus 89 ~~vDgIl~DL 98 (296)
T PRK00050 89 GKVDGILLDL 98 (296)
T ss_pred CccCEEEECC
Confidence 799999987
No 189
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.09 E-value=3.2e-05 Score=67.33 Aligned_cols=85 Identities=9% Similarity=0.071 Sum_probs=61.5
Q ss_pred EEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc
Q 038076 168 EGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL 247 (345)
Q Consensus 168 ~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L 247 (345)
++||++++|++.|++....... ...++++++++|+.+. ...+++||+|++.. .-..++ ...++++++++.|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~----~~~~~i~~~~~d~~~l-p~~~~~fD~v~~~~-~l~~~~---d~~~~l~ei~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR----SCYKCIEWIEGDAIDL-PFDDCEFDAVTMGY-GLRNVV---DRLRAMKEMYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc----cCCCceEEEEechhhC-CCCCCCeeEEEecc-hhhcCC---CHHHHHHHHHHHc
Confidence 5899999999999876542210 0135799999999885 44677899999742 211222 3468999999999
Q ss_pred CCCcEEEEEecCCC
Q 038076 248 MPNGRFMVNCGGID 261 (345)
Q Consensus 248 ~pgGvlvvn~~~~~ 261 (345)
+|||.+++--+...
T Consensus 72 kpGG~l~i~d~~~~ 85 (160)
T PLN02232 72 KPGSRVSILDFNKS 85 (160)
T ss_pred CcCeEEEEEECCCC
Confidence 99999987666543
No 190
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.06 E-value=9.3e-06 Score=78.97 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-CCCCCCC--CCCCCCcEEEEEcccccc-----c
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-GLSDLEK--PTATGGVLQVHIGDVFSP-----S 210 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-~~~~~~~--~~~~~~rv~v~~gDa~~~-----l 210 (345)
+..+||+|||| ||-+.++... ....+.++||+++.++.|++.. .+....+ .....-...++.+|...- +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 56889999999 7778888664 4579999999999999998766 1110000 000123466788887642 1
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.....+||+|-|-.--+-..-.+-..+.+++++.++|+|||+++..+...+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 112369999987432211111222345699999999999999998877544
No 191
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.05 E-value=5.9e-05 Score=68.87 Aligned_cols=135 Identities=15% Similarity=0.162 Sum_probs=91.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCH----HHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDE----ILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp----~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~- 212 (345)
.+..+||-||..+|+...++...- +...|.+||.+| +++++|++. +++--+.+||+..-+.
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-------------~NIiPIl~DAr~P~~Y~ 138 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-------------PNIIPILEDARHPEKYR 138 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-------------TTEEEEES-TTSGGGGT
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-------------CceeeeeccCCChHHhh
Confidence 456799999999999999999874 478999999999 566777773 5788899999975433
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
.-+..|+|+.|+-.++ ..+-+..++..-|++||.+++-+-...-++. .+....+++.++.|++
T Consensus 139 ~lv~~VDvI~~DVaQp~------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t----------~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 139 MLVEMVDVIFQDVAQPD------QARIAALNARHFLKPGGHLIISIKARSIDST----------ADPEEVFAEEVKKLKE 202 (229)
T ss_dssp TTS--EEEEEEE-SSTT------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SS----------SSHHHHHHHHHHHHHC
T ss_pred cccccccEEEecCCChH------HHHHHHHHHHhhccCCcEEEEEEecCcccCc----------CCHHHHHHHHHHHHHH
Confidence 3469999999985432 3445677888899999987765432111000 1123678889999997
Q ss_pred H-CCCCEEEEEec
Q 038076 292 A-FPGKVSWKRMP 303 (345)
Q Consensus 292 ~-F~~~v~~~~~~ 303 (345)
. |. -.....+.
T Consensus 203 ~~~~-~~e~i~Le 214 (229)
T PF01269_consen 203 EGFK-PLEQITLE 214 (229)
T ss_dssp TTCE-EEEEEE-T
T ss_pred cCCC-hheEeccC
Confidence 4 65 33433443
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.02 E-value=5.8e-05 Score=67.47 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=85.1
Q ss_pred ccchHHHHHhhccccCCCC-CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH---HHHhcCCCCCCCCCCCCCcE
Q 038076 124 WTGSYWDEFVSLPAIVPNG-PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK---VRDYFGLSDLEKPTATGGVL 199 (345)
Q Consensus 124 l~~~Y~~~~~~l~~~~~p~-~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~---A~~~f~~~~~~~~~~~~~rv 199 (345)
+..++.|.+..++.+.... +++|||.|+|--+.-+.-.+|+.+++.||-...=+.. +.+.+++ +++
T Consensus 31 ~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L----------~nv 100 (184)
T PF02527_consen 31 WERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL----------SNV 100 (184)
T ss_dssp HHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-----------SSE
T ss_pred HHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC----------CCE
Confidence 3446667777777765444 8999999999776666666799999999999876654 4455554 369
Q ss_pred EEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 200 QVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 200 ~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+++++++.+ .....+||+|+.=++.+ -..+++.+...|++||.++.--+
T Consensus 101 ~v~~~R~E~--~~~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 101 EVINGRAEE--PEYRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp EEEES-HHH--TTTTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEES
T ss_pred EEEEeeecc--cccCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 999999988 34678999999977663 13688889999999999886655
No 193
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.01 E-value=3.3e-05 Score=68.61 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=77.8
Q ss_pred HHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCE---------EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 038076 130 DEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLK---------LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 130 ~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~---------v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~ 200 (345)
..|..+....+...+++--||+|++..+.....++.. +.++|+|+.+++.|++++.... ....+.
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag------~~~~i~ 91 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG------VEDYID 91 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-------CGGEE
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc------cCCceE
Confidence 3444443344567899999999999998876655555 9999999999999999885332 145689
Q ss_pred EEEcccccccccCCCcccEEEEcCCCCCCCCCC----cchHHHHHHHHhccCCCcEEE
Q 038076 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQ----LEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 201 v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~----l~t~ef~~~~~~~L~pgGvlv 254 (345)
+...|+.++- ...+.+|.|+.|.+-+...... -.-.++++.+++.|++..+++
T Consensus 92 ~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 92 FIQWDARELP-LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EEE--GGGGG-GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EEecchhhcc-cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999964 3467999999998665332211 112457778888899943443
No 194
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.95 E-value=1.6e-05 Score=70.56 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=76.9
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
...+.++|.|+|.++....++ ..+|.++|.||...+.|+++...+. +.++.++.|||++| .-+..|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g-------~~n~evv~gDA~~y---~fe~ADvv 100 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPG-------DVNWEVVVGDARDY---DFENADVV 100 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCC-------CcceEEEecccccc---ccccccee
Confidence 367899999999999777664 6899999999999999999987765 67899999999998 33789999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+|..-+..-+-. .....+..+.+-|+.+|.++
T Consensus 101 icEmlDTaLi~E--~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 101 ICEMLDTALIEE--KQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHHHhhHHhhcc--cccHHHHHHHHHhhcCCccc
Confidence 986544211111 12345666677788888765
No 195
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.93 E-value=8e-05 Score=69.66 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=62.5
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++.-||++|.|+|.++..+++. +.+|.++|+||.|+..-.+.+.-.+ ...++++++||... ..-..|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp------~~~kLqV~~gD~lK---~d~P~f 124 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTP------KSGKLQVLHGDFLK---TDLPRF 124 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCC------ccceeeEEeccccc---CCCccc
Confidence 356778999999999999999985 7899999999999998887774322 25789999999765 355889
Q ss_pred cEEEEcC
Q 038076 218 AGIVVDL 224 (345)
Q Consensus 218 D~Ii~D~ 224 (345)
|.+|..+
T Consensus 125 d~cVsNl 131 (315)
T KOG0820|consen 125 DGCVSNL 131 (315)
T ss_pred ceeeccC
Confidence 9999755
No 196
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.91 E-value=4e-06 Score=74.10 Aligned_cols=126 Identities=15% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--------- 209 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--------- 209 (345)
++.+||+||++.|..+..++++. +..+|.+||+.+. .+ .+.+..+.+|..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~-------~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP-------LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc-------ccceeeeecccchhhHHHhhhhh
Confidence 45899999999999999999875 4689999999887 11 13355555554432
Q ss_pred cccCCCcccEEEEcCCCC-CCC--CCCc----chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 210 SEDASGRYAGIVVDLFSE-GKV--LPQL----EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~-~~~--p~~l----~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
+....+++|+|++|.-.. ... ..+. .....+..+.+.|+|||.+++-+..... .
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~------------------~- 145 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE------------------I- 145 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT------------------S-
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc------------------H-
Confidence 211237999999998221 111 1111 1223455666789999999988886543 2
Q ss_pred HHHHHHHHHHCCCCEEEEEec
Q 038076 283 NSAIRALSEAFPGKVSWKRMP 303 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~~~~~~ 303 (345)
..++..+++.|. .|.+++-+
T Consensus 146 ~~~~~~l~~~F~-~v~~~Kp~ 165 (181)
T PF01728_consen 146 EELIYLLKRCFS-KVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHH-HEEEEE-T
T ss_pred HHHHHHHHhCCe-EEEEEECc
Confidence 378888888998 77766544
No 197
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.90 E-value=7.8e-05 Score=69.55 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=66.8
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...++|+||.|.|.++..+...+. +|++-|+++.|...-++. +.+++..|- | .+.+.+||+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k--------------g~~vl~~~~--w-~~~~~~fDv 154 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK--------------GFTVLDIDD--W-QQTDFKFDV 154 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC--------------CCeEEehhh--h-hccCCceEE
Confidence 357899999999999999987664 699999999997654442 233443332 3 345678999
Q ss_pred EEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 220 IVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 220 Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|.| .+-+-.. .-...++.+++.|+|+|++++-+
T Consensus 155 IscLNvLDRc~-----~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 155 ISCLNVLDRCD-----RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred EeehhhhhccC-----CHHHHHHHHHHHhCCCCEEEEEE
Confidence 986 2222111 12457999999999999988754
No 198
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.89 E-value=1.6e-05 Score=69.56 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=54.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC--CcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS--GRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~--~~yD~I 220 (345)
.|+++.||.|..+.++++.+ .+|++||+||.-++.|+.+...-+ -..+++++++|..+.+++.. ..+|+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYG------v~~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYG------VADNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-------GGGEEEEES-HHHHGGGB------SEE
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcC------CCCcEEEEeCCHHHHHhhccccccccEE
Confidence 58999999999999999874 589999999999999998875332 15689999999999876532 228999
Q ss_pred EEcCC
Q 038076 221 VVDLF 225 (345)
Q Consensus 221 i~D~f 225 (345)
++|.+
T Consensus 74 FlSPP 78 (163)
T PF09445_consen 74 FLSPP 78 (163)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99763
No 199
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.89 E-value=0.00026 Score=68.95 Aligned_cols=108 Identities=12% Similarity=0.050 Sum_probs=88.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+...|+++=+|-|.++.-++++ ...+|.++||||..++..+++..++.. ..++..+.||++.+.... ..+|
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eNi~LN~v------~~~v~~i~gD~rev~~~~-~~aD 258 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKENIRLNKV------EGRVEPILGDAREVAPEL-GVAD 258 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHHHHhcCc------cceeeEEeccHHHhhhcc-ccCC
Confidence 45789999999999999888875 334599999999999999999988764 466999999999987543 7899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-|++..+. .+.+|+..+.+.++++|++-+.....+.
T Consensus 259 rIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 259 RIIMGLPK--------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred EEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 99985433 4578999999999999999877665554
No 200
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00026 Score=66.22 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=92.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc--ccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS--PSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~--~l~~~~~ 215 (345)
.+...|++=|.|+|++..++.+. -|..++...|.+..-.+.|++.|..... +.++++.+.|.-. |.. ...
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi------~~~vt~~hrDVc~~GF~~-ks~ 176 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI------GDNVTVTHRDVCGSGFLI-KSL 176 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC------CcceEEEEeecccCCccc-ccc
Confidence 56678999999999999999986 4678999999999999999999965442 6789999998765 222 367
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH-HCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE-AFP 294 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~-~F~ 294 (345)
.+|.|++|+..++...+ .+.++|+.+|.-++++. +.- +..+..+.+|++ -|-
T Consensus 177 ~aDaVFLDlPaPw~AiP---------ha~~~lk~~g~r~csFS-PCI-----------------EQvqrtce~l~~~gf~ 229 (314)
T KOG2915|consen 177 KADAVFLDLPAPWEAIP---------HAAKILKDEGGRLCSFS-PCI-----------------EQVQRTCEALRSLGFI 229 (314)
T ss_pred ccceEEEcCCChhhhhh---------hhHHHhhhcCceEEecc-HHH-----------------HHHHHHHHHHHhCCCc
Confidence 89999999988754222 23458999887666654 332 456677888877 465
No 201
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.84 E-value=3e-05 Score=71.35 Aligned_cols=106 Identities=21% Similarity=0.339 Sum_probs=76.4
Q ss_pred CCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-ccc--CCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SED--ASG 215 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~~--~~~ 215 (345)
+.+||+||||.|.+.--+++..|+ ..|.++|-+|..+++.+++-+..+ .++.-.+-|.-.- +.. ..+
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--------~~~~afv~Dlt~~~~~~~~~~~ 143 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--------SRVEAFVWDLTSPSLKEPPEEG 143 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--------hhhcccceeccchhccCCCCcC
Confidence 448999999999999888888777 999999999999999999877553 3444444444321 111 467
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
..|+|++ +|--..+++. .-...+.++.+.|+|||.+++-
T Consensus 144 svD~it~-IFvLSAi~pe-k~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 144 SVDIITL-IFVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred ccceEEE-EEEEeccChH-HHHHHHHHHHHHhCCCcEEEEe
Confidence 8998875 2222233322 2245789999999999999864
No 202
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.80 E-value=1.4e-05 Score=66.95 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=47.6
Q ss_pred CCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 196 GGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+-+++++.||+++.++....++|+|+.|.|++.. .+++.+.|+|+.++++++|||+++.
T Consensus 30 ~v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 30 NVTLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp TEEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-CcccCCHHHHHHHHHHhCCCcEEEE
Confidence 4568899999999998888999999999999754 4669999999999999999999863
No 203
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.78 E-value=5.4e-05 Score=72.58 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=75.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-------CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-------WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
.+..+|++-.||+|++...+.++ .+..++.++|+|+..+.+|+-.+.+... ......+..+|...--.
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~-----~~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI-----DNSNINIIQGDSLENDK 119 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-----HCBGCEEEES-TTTSHS
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-----ccccccccccccccccc
Confidence 34567999999999998887764 3678999999999999999876543321 12345689999765433
Q ss_pred cC-CCcccEEEEcCCCCCC------C-----------CCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 212 DA-SGRYAGIVVDLFSEGK------V-----------LPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 212 ~~-~~~yD~Ii~D~f~~~~------~-----------p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.. .++||+|+...+-... . +..-....|++.+.+.|++||.+++-+..
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 22 5799999987533221 0 00112235889999999999998776653
No 204
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.78 E-value=0.0002 Score=69.49 Aligned_cols=124 Identities=13% Similarity=-0.012 Sum_probs=90.9
Q ss_pred cchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 125 TGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 125 ~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
...+.++|.-+....+...||+==||||++..++.- -++++.+.|||..|++-|+.++..-. -+...++..
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~-------i~~~~~~~~ 252 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYG-------IEDYPVLKV 252 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhC-------cCceeEEEe
Confidence 334567776666656677999999999999988764 37999999999999999998885321 134545555
Q ss_pred -ccccccccCCCcccEEEEcCCCCCC--CCCC---cchHHHHHHHHhccCCCcEEEEEec
Q 038076 205 -DVFSPSEDASGRYAGIVVDLFSEGK--VLPQ---LEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 205 -Da~~~l~~~~~~yD~Ii~D~f~~~~--~p~~---l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|+... .-.+.++|.|++|.+-+-. .... -.-.++++.+.+.|++||.+++...
T Consensus 253 ~Da~~l-pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 253 LDATNL-PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cccccC-CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 88774 3334579999999866532 1111 1235789999999999999987776
No 205
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.72 E-value=0.00068 Score=72.40 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=74.3
Q ss_pred CCCCEEEEeecccHHHHHHHHh----CC--------------------------------------CCEEEEEECCHHHH
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL----WP--------------------------------------SLKLEGWEIDEILI 177 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~----~p--------------------------------------~~~v~~VEidp~vi 177 (345)
+...+++-+||+|+++.+.+.. .| ..+|+++|+|+.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4578999999999999877542 11 23699999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccC---CCcEE
Q 038076 178 DKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLM---PNGRF 253 (345)
Q Consensus 178 ~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~---pgGvl 253 (345)
+.|+++....+. ..++++..+|+.+.... ..++||+|+++.+-+......-...++|..+-+.|+ +|+.+
T Consensus 270 ~~A~~N~~~~g~------~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 270 QAARKNARRAGV------AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHcCC------CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 999998865442 45799999999886432 235799999986543322222222345554444443 66665
Q ss_pred EE
Q 038076 254 MV 255 (345)
Q Consensus 254 vv 255 (345)
++
T Consensus 344 ~l 345 (702)
T PRK11783 344 AL 345 (702)
T ss_pred EE
Confidence 44
No 206
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.71 E-value=0.00015 Score=70.12 Aligned_cols=118 Identities=18% Similarity=0.096 Sum_probs=81.1
Q ss_pred cccchHHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 038076 123 KWTGSYWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH 202 (345)
Q Consensus 123 ~l~~~Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~ 202 (345)
.-+..|-.++..-..+-+.+.||++|||+|.+..+.++. +..+|.+||-+... +.|++-+...+. +..++++
T Consensus 43 VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~------~~ii~vi 114 (346)
T KOG1499|consen 43 VRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGL------EDVITVI 114 (346)
T ss_pred hhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCc------cceEEEe
Confidence 345567665554445567899999999999999998876 46899999986554 888887754442 5679999
Q ss_pred EcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHH----HhccCCCcEEE
Q 038076 203 IGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKL----KDRLMPNGRFM 254 (345)
Q Consensus 203 ~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~----~~~L~pgGvlv 254 (345)
.|...+. .=+.++.|+|+..- +-.-|+-...+..+ -+.|+|||++.
T Consensus 115 ~gkvEdi-~LP~eKVDiIvSEW-----MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 115 KGKVEDI-ELPVEKVDIIVSEW-----MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecceEEE-ecCccceeEEeehh-----hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 9988886 22359999999742 11112222222221 24599999875
No 207
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00019 Score=72.25 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=83.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~~y 217 (345)
+..+++++=||.|+++..+.+ ...+|++||++|+.++.|+++..... -.+++++.+|+.++.... ...+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~-------i~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANG-------IDNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcC-------CCcEEEEeCCHHHHhhhccccCCC
Confidence 457899999999999999985 46899999999999999999886554 344999999999998764 3678
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|.|++|.+-.+ ...++++.+. .++|..++-+.|..
T Consensus 364 d~VvvDPPR~G------~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 364 DVVVVDPPRAG------ADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CEEEECCCCCC------CCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 99999975543 3356666554 57888888777763
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.00052 Score=62.72 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=82.7
Q ss_pred cchHHHHHhhccccCC-CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH---HHHhcCCCCCCCCCCCCCcEE
Q 038076 125 TGSYWDEFVSLPAIVP-NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK---VRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 125 ~~~Y~~~~~~l~~~~~-p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~---A~~~f~~~~~~~~~~~~~rv~ 200 (345)
..+.++.....+.... +.+++|||.|+|--+.-++=.+|+.++|-+|-...=+.. +.+-+++ ++++
T Consensus 51 ~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L----------~nv~ 120 (215)
T COG0357 51 QRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL----------ENVE 120 (215)
T ss_pred HHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC----------CCeE
Confidence 3344455555555544 799999999999666655545799999999998876554 4454553 4699
Q ss_pred EEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 201 VHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 201 v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
++++.+.++-..... ||+|.+-++..- ..+.+-|...+++||.+++-.+...
T Consensus 121 i~~~RaE~~~~~~~~-~D~vtsRAva~L--------~~l~e~~~pllk~~g~~~~~k~~~~ 172 (215)
T COG0357 121 IVHGRAEEFGQEKKQ-YDVVTSRAVASL--------NVLLELCLPLLKVGGGFLAYKGLAG 172 (215)
T ss_pred EehhhHhhccccccc-CcEEEeehccch--------HHHHHHHHHhcccCCcchhhhHHhh
Confidence 999999998432222 999998776642 2466778888999998765544433
No 209
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.0014 Score=64.42 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=85.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC--
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS-- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~-- 214 (345)
.+..+||++..+.|.=+.++.....+ ..|+++|+|+.-++..+++..=-+ -.++.++..|++.+.....
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-------~~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG-------VRNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC-------CCceEEEeccccccccccccc
Confidence 35689999999988777777766543 567999999999888877663111 2348899999988754432
Q ss_pred CcccEEEEcCCCCCC--C---CCC-------------cchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 GRYAGIVVDLFSEGK--V---LPQ-------------LEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~--~---p~~-------------l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++||.|++|++..+. + |.- -...+++..+.+.|+|||+++...-+...
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 369999999987643 1 211 12567888999999999999987766655
No 210
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.61 E-value=0.00042 Score=66.64 Aligned_cols=104 Identities=15% Similarity=0.226 Sum_probs=75.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
..+-||++|+|+|.+.-+.... +..+|.+||- .+|.+.|++...-+. ...|+.+|.|...+. ..+++.|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEA-S~MAqyA~~Lv~~N~------~~~rItVI~GKiEdi--eLPEk~Dv 246 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEA-SEMAQYARKLVASNN------LADRITVIPGKIEDI--ELPEKVDV 246 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEeh-hHHHHHHHHHHhcCC------ccceEEEccCccccc--cCchhccE
Confidence 4567999999999998776653 5689999998 578888998765332 367999999987664 36899999
Q ss_pred EEEcCCCCCCCCCCcchH---HHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEV---ATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~---ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||...-. + -|+.+ |-|-.+++.|+|+|.+.=.++
T Consensus 247 iISEPMG--~---mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 247 IISEPMG--Y---MLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred EEeccch--h---hhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence 9974211 1 13333 455567899999998754433
No 211
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.59 E-value=0.00014 Score=68.34 Aligned_cols=88 Identities=17% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC--CCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA--SGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~--~~~y 217 (345)
+...|++||.|.|.+++.|++.. .++++||+|+.+++.-++.+.. +++++++.+|+.++-... ..+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~---------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFAS---------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTT---------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhh---------cccceeeecchhccccHHhhcCCc
Confidence 56889999999999999999874 8999999999999999998861 579999999999973221 2344
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
..|+.. +|.. .+..++..+..
T Consensus 99 ~~vv~N------lPy~-is~~il~~ll~ 119 (262)
T PF00398_consen 99 LLVVGN------LPYN-ISSPILRKLLE 119 (262)
T ss_dssp EEEEEE------ETGT-GHHHHHHHHHH
T ss_pred eEEEEE------eccc-chHHHHHHHhh
Confidence 566653 3432 44556666555
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.59 E-value=0.00019 Score=68.54 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=70.6
Q ss_pred CCCEEEEeeccc----HHHHHHHHhCC----CCEEEEEECCHHHHHHHHHh------------------cCCCCCCC-C-
Q 038076 141 NGPIAIYGLGGG----TAAHLMLDLWP----SLKLEGWEIDEILIDKVRDY------------------FGLSDLEK-P- 192 (345)
Q Consensus 141 p~~VLiIG~G~G----~~~~~l~~~~p----~~~v~~VEidp~vi~~A~~~------------------f~~~~~~~-~- 192 (345)
+-+|...||++| +++..+.+..+ ..+|++.|||+.+++.|++- |.-..... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 468999999999 56666666432 37899999999999998753 21000000 0
Q ss_pred ----CCCCCcEEEEEcccccccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 193 ----TATGGVLQVHIGDVFSPSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 193 ----~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..-..++++...|..+.--...++||+|+|- ++- +. ..-.....++.+.+.|+|||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvli--yF-~~~~~~~vl~~l~~~L~pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMI--YF-DKTTQERILRRFVPLLKPDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHh--cC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0012455666666654211124789999982 211 11 112456789999999999999864
No 213
>PRK04148 hypothetical protein; Provisional
Probab=97.58 E-value=0.00027 Score=59.83 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCCCEEEEeecccH-HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGT-AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~-~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+++++++||+|.|. ++..|.+. +.+|+++|+||..++.+++.. ++++.+|..+---..-+.+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~--------------~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG--------------LNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC--------------CeEEECcCCCCCHHHHhcCC
Confidence 45789999999995 88777753 689999999999999887752 56888888764222347788
Q ss_pred EEEE
Q 038076 219 GIVV 222 (345)
Q Consensus 219 ~Ii~ 222 (345)
+|..
T Consensus 80 liys 83 (134)
T PRK04148 80 LIYS 83 (134)
T ss_pred EEEE
Confidence 9884
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.53 E-value=0.00033 Score=72.26 Aligned_cols=78 Identities=15% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP--------SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS- 210 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p--------~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l- 210 (345)
...+|++.|||+|.+...+.+..+ ...++++|||+..++.|+..+..-. ....+++.+|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-------~~~~~i~~~d~l~~~~ 103 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-------LLEINVINFNSLSYVL 103 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-------CCCceeeecccccccc
Confidence 356899999999999988876543 2689999999999999998764221 123566766655431
Q ss_pred ---ccCCCcccEEEEcC
Q 038076 211 ---EDASGRYAGIVVDL 224 (345)
Q Consensus 211 ---~~~~~~yD~Ii~D~ 224 (345)
....++||+||...
T Consensus 104 ~~~~~~~~~fD~IIgNP 120 (524)
T TIGR02987 104 LNIESYLDLFDIVITNP 120 (524)
T ss_pred cccccccCcccEEEeCC
Confidence 11236899999865
No 215
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.52 E-value=0.00033 Score=67.79 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=68.8
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-...+++|+|.|.+++.++.++|. |.++|.|..-+..++.+++ + .++-+.||+.+- -.+-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~----------gV~~v~gdmfq~----~P~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-P----------GVEHVAGDMFQD----TPKGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-C----------Ccceeccccccc----CCCcCeE
Confidence 367899999999999999998885 7777777776666666664 3 277888998774 3445699
Q ss_pred EEcCCCCCCCCCCcc---hHHHHHHHHhccCCCcEEEE
Q 038076 221 VVDLFSEGKVLPQLE---EVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 221 i~D~f~~~~~p~~l~---t~ef~~~~~~~L~pgGvlvv 255 (345)
++-- +.-++. -.+|+++|++.|+|||.+++
T Consensus 241 ~mkW-----iLhdwtDedcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 241 WMKW-----ILHDWTDEDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EEEe-----ecccCChHHHHHHHHHHHHhCCCCCEEEE
Confidence 8732 112222 25789999999999998776
No 216
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.51 E-value=0.00026 Score=67.72 Aligned_cols=119 Identities=16% Similarity=0.116 Sum_probs=73.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-CCCCCCCCCCCCcEEEEEcccccc-----cc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-LSDLEKPTATGGVLQVHIGDVFSP-----SE 211 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-~~~~~~~~~~~~rv~v~~gDa~~~-----l~ 211 (345)
.+...+++|||| ||-+.++-.. ....+.++||.+.-++-|++... +....+ ..-=.+.++.+|-..- ++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~--~~~f~a~f~~~Dc~~~~l~d~~e 191 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFK--KFIFTAVFIAADCFKERLMDLLE 191 (389)
T ss_pred ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhh--cccceeEEEEeccchhHHHHhcc
Confidence 456789999999 5555555433 35789999999999999986542 110000 0011356777776542 12
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
..+.+||+|-|-..-+-..-..-..+-++.++.++|+|||+++-.+...+
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 23455999976432221111122334578999999999999987776544
No 217
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.48 E-value=0.00055 Score=61.97 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=73.7
Q ss_pred CCCCC-EEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc---CCCCCCCCCCCCCcEEEEEccc-ccccc--
Q 038076 139 VPNGP-IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF---GLSDLEKPTATGGVLQVHIGDV-FSPSE-- 211 (345)
Q Consensus 139 ~~p~~-VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f---~~~~~~~~~~~~~rv~v~~gDa-~~~l~-- 211 (345)
.+..+ ||+||+|+|-.+.++.+.+|+.+-.--|+|+....--+.|. +++.. .+-+.+-..+. ..+..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv------~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNV------RPPLALDVSAPPWPWELPA 96 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCccc------CCCeEeecCCCCCcccccc
Confidence 34454 99999999999999999999999999999999965444433 33321 12233322222 22211
Q ss_pred -cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 212 -DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 212 -~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
...+.||+|++--. -++.+.-.+..+|+.+.+.|++||.+++.
T Consensus 97 ~~~~~~~D~i~~~N~--lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 97 PLSPESFDAIFCINM--LHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccCCCCcceeeehhH--HHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 13578999997211 12333345678999999999999999863
No 218
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.46 E-value=0.00087 Score=61.91 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=58.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCCCcEE-EEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDK-VRDYFGLSDLEKPTATGGVLQ-VHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~~rv~-v~~gDa~~~l~~~~~~y 217 (345)
+.+.+|++|||+|.++..+++. +..+|++||+++.++.. .++ ++++. +-..|.+ ++...+-..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~-------------~~~v~~~~~~ni~-~~~~~~~~~ 139 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQ-------------DERVKVLERTNIR-YVTPADIFP 139 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhc-------------CCCeeEeecCCcc-cCCHhHcCC
Confidence 5678999999999999999975 55799999999977764 222 34443 2233444 221111112
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
|++.+|+--. + . .-.+..+.+.|+| |.++.-+
T Consensus 140 d~~~~Dvsfi-S-----~-~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFI-S-----L-ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEe-e-----h-HhHHHHHHHHhCc-CeEEEEc
Confidence 4444443110 0 0 1257788999999 8766544
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.46 E-value=0.002 Score=61.18 Aligned_cols=111 Identities=15% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~ 214 (345)
..|-+|++|.||.|.-....+...|. .+|...|.+|.-++..++...-..+ ..-+++..+|+.+. ++...
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL------~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL------EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC------ccceEEEecCCCCHhHhhccC
Confidence 46789999999999887777777776 8999999999999998877643332 34469999999986 44456
Q ss_pred CcccEEEEcC-CCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 215 GRYAGIVVDL-FSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 215 ~~yD~Ii~D~-f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
.+.+++++.. |. .+++.-.-.+.+.-+.+.+.|||.++..-
T Consensus 208 p~P~l~iVsGL~E--lF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 208 PAPTLAIVSGLYE--LFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCEEEEecchh--hCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 7789988732 21 12222223456788999999999998654
No 220
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.00053 Score=58.63 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=68.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+.+++++||||.|.+.... ..+....|.++||||+.+++++++..--+ -++.+...|..+. ......||
T Consensus 47 iEgkkl~DLgcgcGmLs~a~-sm~~~e~vlGfDIdpeALEIf~rNaeEfE--------vqidlLqcdildl-e~~~g~fD 116 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF-SMPKNESVLGFDIDPEALEIFTRNAEEFE--------VQIDLLQCDILDL-ELKGGIFD 116 (185)
T ss_pred ccCcchhhhcCchhhhHHHh-hcCCCceEEeeecCHHHHHHHhhchHHhh--------hhhheeeeeccch-hccCCeEe
Confidence 36899999999999998443 34556899999999999999998764222 2346666666553 23468999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLM 248 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~ 248 (345)
..++|..-+... . -.+.+|.+...+.-+
T Consensus 117 taviNppFGTk~-~-~aDm~fv~~al~~~~ 144 (185)
T KOG3420|consen 117 TAVINPPFGTKK-K-GADMEFVSAALKVAS 144 (185)
T ss_pred eEEecCCCCccc-c-cccHHHHHHHHHHHH
Confidence 999986554221 1 245677776665544
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.003 Score=57.20 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=88.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc------c
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS------E 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l------~ 211 (345)
.+...|++||+-.|+..+.+.+... ..+|.+|||+|. .+ .+++..+.+|.+.-- .
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~-------~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KP-------IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------cc-------CCCceEEeeeccCccHHHHHHH
Confidence 4568999999999999998887644 467999999873 11 356889999887631 0
Q ss_pred c-CCCcccEEEEcCCCCCC---CCCCcc----hHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHH
Q 038076 212 D-ASGRYAGIVVDLFSEGK---VLPQLE----EVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHN 283 (345)
Q Consensus 212 ~-~~~~yD~Ii~D~f~~~~---~p~~l~----t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~ 283 (345)
. ...+.|+|++|.....+ ...+.. ..-.++.+.+.|+|||.+++-+..... ..
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~-------------------~~ 166 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED-------------------FE 166 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC-------------------HH
Confidence 1 24557999999755321 112222 223455677789999999988775553 56
Q ss_pred HHHHHHHHHCCCCEEEEEe
Q 038076 284 SAIRALSEAFPGKVSWKRM 302 (345)
Q Consensus 284 ~~~~~l~~~F~~~v~~~~~ 302 (345)
..+..+++.|. .|...+-
T Consensus 167 ~~l~~~~~~F~-~v~~~KP 184 (205)
T COG0293 167 DLLKALRRLFR-KVKIFKP 184 (205)
T ss_pred HHHHHHHHhhc-eeEEecC
Confidence 78889999999 6765443
No 222
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.32 E-value=0.00047 Score=62.21 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCCCEEEEeeccc----HHHHHHHHhC----C-CCEEEEEECCHHHHHHHHH------------------hc-CCCCCCC
Q 038076 140 PNGPIAIYGLGGG----TAAHLMLDLW----P-SLKLEGWEIDEILIDKVRD------------------YF-GLSDLEK 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G----~~~~~l~~~~----p-~~~v~~VEidp~vi~~A~~------------------~f-~~~~~~~ 191 (345)
++-+|...||++| +++..+.+.. + ..+|.+.|||+.+++.|++ || ...+...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 5666655521 2 3799999999999999874 33 1110000
Q ss_pred --CCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 192 --PTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 192 --~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
...-..++++...|..+ .....++||+|+|----- +. ..-...+.++.+.+.|+|||.|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlI-YF-~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLI-YF-DPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGG-GS--HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEE-Ee-CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 00113467777777777 223568999999831000 11 112446789999999999999975
No 223
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.32 E-value=0.00034 Score=66.66 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=87.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
+..+||++.+|.|+=+.++..... ...|+++|+++.-++..+++..--+ ..++.+...|++.+... ....|
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g-------~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG-------VFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--------SSEEEEESHHHHHHHHHHTTTE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC-------CceEEEEeecccccccccccccc
Confidence 557899999999988888887755 5899999999999998877663221 34688888999997543 34469
Q ss_pred cEEEEcCCCCCC-----CCCC-------------cchHHHHHHHHhcc----CCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGK-----VLPQ-------------LEEVATWLKLKDRL----MPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~-----~p~~-------------l~t~ef~~~~~~~L----~pgGvlvvn~~~~~~ 262 (345)
|.|++|+...+. -|.- -...+.++.+.+.+ +|||.++...-+...
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 999999977643 1110 12567788999999 999999987665554
No 224
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.24 E-value=0.0043 Score=55.29 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=81.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-ccccccc-----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSE----- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~----- 211 (345)
.+..+||++|+..|+......+. .|...|.+|||- ++.-+ +.++++.+ |..+-..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~---------~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPP---------EGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCC---------CCcccccccccCCHHHHHHHH
Confidence 45678999999999999877766 488999999983 23211 23555555 4443211
Q ss_pred --cCCCcccEEEEcCCCCCC---CCCCcchHHH----HHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHH
Q 038076 212 --DASGRYAGIVVDLFSEGK---VLPQLEEVAT----WLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMH 282 (345)
Q Consensus 212 --~~~~~yD~Ii~D~f~~~~---~p~~l~t~ef----~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~ 282 (345)
-++.+.|+|+.|.....+ +-.|....|. +.-....+.|+|.+++-+|..+. .
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e-------------------~ 190 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE-------------------E 190 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc-------------------h
Confidence 156889999999755322 2344333332 23344568899999999998775 2
Q ss_pred HHHHHHHHHHCCCCEE
Q 038076 283 NSAIRALSEAFPGKVS 298 (345)
Q Consensus 283 ~~~~~~l~~~F~~~v~ 298 (345)
..+.+.|+++|. .|.
T Consensus 191 ~~l~r~l~~~f~-~Vk 205 (232)
T KOG4589|consen 191 ALLQRRLQAVFT-NVK 205 (232)
T ss_pred HHHHHHHHHHhh-hcE
Confidence 355667888888 555
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.24 E-value=0.007 Score=48.26 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=70.6
Q ss_pred EEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCC-CcccEE
Q 038076 144 IAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDAS-GRYAGI 220 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~-~~yD~I 220 (345)
++++|||.|... .+....+. ..++++|+++.+++.++....... ...+.+..+|... .+.... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG-------LGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC-------CCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999876 43433333 488889999999998655442111 1116788888776 233333 589999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
......... . ....+..+.+.|+|+|.+++.......
T Consensus 124 -~~~~~~~~~-~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 124 -ISLLVLHLL-P---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred -eeeeehhcC-C---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 422111111 1 477899999999999999887766543
No 226
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.013 Score=52.82 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=89.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
.+..+||=||..+|+...++....+...|.+||-+|.+.+---. +.. +.+++--+.+||+.--+. --+.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~---~a~------~R~Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLD---VAE------KRPNIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHH---HHH------hCCCceeeecccCCcHHhhhhccc
Confidence 46789999999999999999988788899999999987653221 111 246788899999874221 2467
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCc--EEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNG--RFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAF 293 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgG--vlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F 293 (345)
.|+|+.|+-.++ .+.=+..++..-|+++| ++++-.-+.+.. .|-...++..+..|.+.+
T Consensus 146 VDviy~DVAQp~------Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT------------~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 146 VDVIYQDVAQPN------QAEILADNAEFFLKKGGYVVIAIKARSIDVT------------ADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred ccEEEEecCCch------HHHHHHHHHHHhcccCCeEEEEEEeeccccc------------CCHHHHHHHHHHHHHhcC
Confidence 999999985542 33446677888899999 455544444431 122356777777777664
No 227
>PRK10742 putative methyltransferase; Provisional
Probab=97.19 E-value=0.0015 Score=60.81 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=63.9
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCC-CCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTA-TGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~-~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+||++=+|.|..+..+... +++|+.||-+|.+..+.++.+.-. ....... -..|++++++|+.+||+.....||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 8999999999999998875 677999999999999988766421 0000000 12579999999999998877789999
Q ss_pred EEcCCC
Q 038076 221 VVDLFS 226 (345)
Q Consensus 221 i~D~f~ 226 (345)
++|..-
T Consensus 169 YlDPMf 174 (250)
T PRK10742 169 YLDPMF 174 (250)
T ss_pred EECCCC
Confidence 999643
No 228
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.18 E-value=0.0015 Score=64.23 Aligned_cols=89 Identities=19% Similarity=0.162 Sum_probs=60.4
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--------- 212 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--------- 212 (345)
.++|++-||.|+++..+.+. ..+|++||+++..++.|+++..... -.+++++.+|+-++...
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~-------i~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNG-------IDNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT---------SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcC-------CCcceEEEeeccchhHHHHhhHHHHh
Confidence 47999999999999998864 4699999999999999999987654 35799999887665321
Q ss_pred ------CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHh
Q 038076 213 ------ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKD 245 (345)
Q Consensus 213 ------~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~ 245 (345)
...++|+|++|.+-.+ ...++.+.+.+
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G------~~~~~~~~~~~ 301 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAG------LDEKVIELIKK 301 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT-------SCHHHHHHHHH
T ss_pred hhhhhhhhcCCCEEEEcCCCCC------chHHHHHHHhc
Confidence 1236899999975543 23456665543
No 229
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.13 E-value=0.0011 Score=65.80 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=77.4
Q ss_pred CCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+-++|+-=+|+|.=+...... ....+|++-|+||+.+++.+++..+.+.. +.++++.++||...+....++||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~-----~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE-----DERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S-----GCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc-----CceEEEehhhHHHHhhhccccCCE
Confidence 447888778888766554544 34489999999999999999998766532 238999999999998767899999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|=+|.|... ..|++.+.+.++.||++.+...
T Consensus 125 IDlDPfGSp--------~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 125 IDLDPFGSP--------APFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEE--SS----------HHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEeCCCCCc--------cHhHHHHHHHhhcCCEEEEecc
Confidence 999998853 4699999999999999998754
No 230
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.12 E-value=0.0034 Score=59.38 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCCEEEEeeccc----HHHHHHHHhCC-----CCEEEEEECCHHHHHHHHHhcCC-CCC-CCC----------CCCCC--
Q 038076 141 NGPIAIYGLGGG----TAAHLMLDLWP-----SLKLEGWEIDEILIDKVRDYFGL-SDL-EKP----------TATGG-- 197 (345)
Q Consensus 141 p~~VLiIG~G~G----~~~~~l~~~~p-----~~~v~~VEidp~vi~~A~~~f~~-~~~-~~~----------~~~~~-- 197 (345)
+-+|...||++| +++..+.+..| ..+|++.|||..+++.|+.-..- ... .+. ...++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 568999999999 68888887765 48999999999999998753311 000 000 00011
Q ss_pred --------cEEEEEcccccccccCCCcccEEEEc-CCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 198 --------VLQVHIGDVFSPSEDASGRYAGIVVD-LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 198 --------rv~v~~gDa~~~l~~~~~~yD~Ii~D-~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|++...|..+--. ..+.||+|+|= +-- + -..-...+.+......|+|||.|.+
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLI--Y-Fd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLI--Y-FDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEE--e-eCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 12222222211100 24679999982 100 1 1223567889999999999999974
No 231
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.11 E-value=0.002 Score=61.04 Aligned_cols=46 Identities=17% Similarity=0.334 Sum_probs=40.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~ 185 (345)
.|++|||+|+|.|+....+...++. .++++||.++.+++++++-+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 6889999999999998888887774 789999999999999998764
No 232
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.10 E-value=0.0035 Score=61.01 Aligned_cols=99 Identities=10% Similarity=-0.001 Sum_probs=73.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+..++++||+++|..+..+.++ +.+|++||..|.--.+ . .+++++.+.+|+..|... .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L-------~-------~~~~V~h~~~d~fr~~p~-~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSL-------M-------DTGQVEHLRADGFKFRPP-RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhh-------h-------CCCCEEEEeccCcccCCC-CCCCC
Confidence 45678999999999999999975 5699999966522111 1 278999999999999643 67899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCC--cEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN--GRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg--Gvlvvn~~~~~~ 262 (345)
++++|.-.. | ....+.+.+.|..| .-.++|+--+..
T Consensus 273 wvVcDmve~---P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk 310 (357)
T PRK11760 273 WLVCDMVEK---P-----ARVAELMAQWLVNGWCREAIFNLKLPMK 310 (357)
T ss_pred EEEEecccC---H-----HHHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence 999998543 2 24566677777665 457778765544
No 233
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.012 Score=58.05 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC--------------------------------C-------EEEEEECCHHHHHH
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS--------------------------------L-------KLEGWEIDEILIDK 179 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~--------------------------------~-------~v~~VEidp~vi~~ 179 (345)
.+...+++==||+|+++.+.+-..++ . .+.++|||+.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 34468899999999999987755432 1 37799999999999
Q ss_pred HHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCC-----cchHHHHHHHHhccCCCcEEE
Q 038076 180 VRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQ-----LEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 180 A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~-----l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+.+....+ -...+++..+|+..+-. ..+.+|+||++.+-+.-+..+ || .+|-+.+++.++--+.++
T Consensus 270 Ak~NA~~AG------v~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeRlg~~~~v~~LY-~~fg~~lk~~~~~ws~~v 341 (381)
T COG0116 270 AKANARAAG------VGDLIEFKQADATDLKE-PLEEYGVVISNPPYGERLGSEALVAKLY-REFGRTLKRLLAGWSRYV 341 (381)
T ss_pred HHHHHHhcC------CCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchhcCChhhHHHHH-HHHHHHHHHHhcCCceEE
Confidence 998875443 25679999999998632 227999999987665433333 33 356667777777777776
Q ss_pred EE
Q 038076 255 VN 256 (345)
Q Consensus 255 vn 256 (345)
+.
T Consensus 342 ~t 343 (381)
T COG0116 342 FT 343 (381)
T ss_pred EE
Confidence 54
No 234
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.00 E-value=0.0019 Score=54.28 Aligned_cols=57 Identities=9% Similarity=-0.038 Sum_probs=46.1
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV 206 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa 206 (345)
.++++|+|.|..+..+.+..|..+++++|.+|.+.+.+++.+.... -++++++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~-------~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN-------LPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC-------CCcEEEEEeee
Confidence 3799999999999999988888899999999999999999875432 13466665543
No 235
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.0015 Score=66.26 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=76.7
Q ss_pred CCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..|+++|+|-|-+....++. ....++.+||-+|..+-.-+.. .... -+.+|+++.+|.|+|-+ +.++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~------W~~~Vtii~~DMR~w~a-p~eq~ 440 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFEC------WDNRVTIISSDMRKWNA-PREQA 440 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhh------hcCeeEEEeccccccCC-chhhc
Confidence 45788999999888776653 3458999999999988765442 1122 26899999999999952 24899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+|+..+-.. +-..-.+.|.+.-+.+.|+|+|+-+
T Consensus 441 DI~VSELLGS--FGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 441 DIIVSELLGS--FGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred cchHHHhhcc--ccCccCCHHHHHHHHhhcCCCceEc
Confidence 9998765332 2233357899999999999999875
No 236
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.94 E-value=0.0057 Score=57.62 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred CCCEEEEeec--ccHHHHHHH-HhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---ccc--
Q 038076 141 NGPIAIYGLG--GGTAAHLML-DLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SED-- 212 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~-~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~-- 212 (345)
-+..|+||+| +-...+++. +..|+.+|..||.||.++..++..+.-.+ +.+..++.+|.++- |..
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-------~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-------RGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-------TSEEEEEE--TT-HHHHHCSHH
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-------CccEEEEeCCCCCHHHHhcCHH
Confidence 3679999999 223445554 34799999999999999999999875321 23599999999873 221
Q ss_pred ------CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 213 ------ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 213 ------~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
..+..-++++.+.. .++..-.-.+.++.+++.|.||..|++.-...+.
T Consensus 142 ~~~~lD~~rPVavll~~vLh--~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLVAVLH--FVPDDDDPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp HHCC--TTS--EEEECT-GG--GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred HHhcCCCCCCeeeeeeeeec--cCCCccCHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 23444456554422 2233334468999999999999999998776654
No 237
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.0036 Score=61.12 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=85.8
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+.+|++-=+|+|.=+...+..-+..+++.-||+|..+++.+++..++. .....++.+|+-.++......||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-------~~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-------GEDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-------cccceeecchHHHHHHhcCCCccEE
Confidence 678999888999776655555565699999999999999999987652 3445666699999998878999999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
=+|.|... ..|++.+.+..+.||++.+......
T Consensus 126 DiDPFGSP--------aPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 126 DIDPFGSP--------APFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred ecCCCCCC--------chHHHHHHHHhhcCCEEEEEecccc
Confidence 99998853 2488888899999999998765543
No 238
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.78 E-value=0.015 Score=53.97 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=59.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
..++||+||=..-+.....+. .+..+|+++|||+.+++.-++...-- +-.++.++.|.|.-|.. -.++||
T Consensus 44 ~gk~il~lGDDDLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~--------gl~i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEE--------GLPIEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHH--------T--EEEE---TTS---TTTSS-BS
T ss_pred cCCEEEEEcCCcHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHc--------CCceEEEEecccccCCHHHhcCCC
Confidence 578999999776644433333 34589999999999999877654311 22499999999998865 468999
Q ss_pred EEEEcCCCCCCCCCCcch-HHHHHHHHhccCCCc-EEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEE-VATWLKLKDRLMPNG-RFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t-~ef~~~~~~~L~pgG-vlvvn~~~~~ 261 (345)
+++.|..- .... .-|+....+.|+..| ...+.+...+
T Consensus 115 ~f~TDPPy------T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 115 VFFTDPPY------TPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp EEEE---S------SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred EEEeCCCC------CHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 99998422 1111 236777888898877 5555555544
No 239
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.77 E-value=0.006 Score=58.69 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=63.3
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----CC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----~~ 214 (345)
.+...+++.=+|.|..+..+++..|+.+|.++|.||.+++.|++.+. + ...|+++++++..++.+. ..
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~--~------~~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS--D------FEGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh--h------cCCcEEEEeCCHHHHHHHHHhcCC
Confidence 34567888889999999999988777999999999999999998763 1 146899999998886432 23
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
.++|.|+.|+
T Consensus 91 ~~vDgIl~DL 100 (305)
T TIGR00006 91 TKIDGILVDL 100 (305)
T ss_pred CcccEEEEec
Confidence 5799999987
No 240
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.75 E-value=0.0033 Score=57.75 Aligned_cols=107 Identities=18% Similarity=0.068 Sum_probs=80.2
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
-+.+++||||-|.+.+.+... .-.+++.+|.+-.|++-+++.-. + .-.+...++|- ++|.-.+.++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qd-p--------~i~~~~~v~DE-E~Ldf~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQD-P--------SIETSYFVGDE-EFLDFKENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCC-C--------ceEEEEEecch-hcccccccchhhh
Confidence 467999999999999999875 35799999999999999987432 2 12345566664 4456678899999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+..+..++. ++| ...+.+|+..|||+|.++-.+.+.+.
T Consensus 142 isSlslHW~--NdL--Pg~m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 142 ISSLSLHWT--NDL--PGSMIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred hhhhhhhhh--ccC--chHHHHHHHhcCCCccchhHHhcccc
Confidence 976544432 112 35688999999999999988776665
No 241
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.64 E-value=0.016 Score=54.90 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=80.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC-CCCC------------C---------------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL-SDLE------------K--------------- 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~------------~--------------- 191 (345)
.+.+||+=|+|-|.++.++.+. +..+.+.|.+--|+=..+--+.. ...+ +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3578999999999999999986 78999999999987543322221 0000 0
Q ss_pred -----CCCCCCcEEEEEcccccccccC--CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 192 -----PTATGGVLQVHIGDVFSPSEDA--SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 192 -----~~~~~~rv~v~~gDa~~~l~~~--~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
......++.+..||..++-... .++||+|+.--|-. ..+ --.++++.+.+.|||||+. +|++.--.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID-TA~---Ni~~Yi~tI~~lLkpgG~W-IN~GPLly 206 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID-TAE---NIIEYIETIEHLLKPGGYW-INFGPLLY 206 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee-chH---HHHHHHHHHHHHhccCCEE-EecCCccc
Confidence 0123568999999999975543 57999998653332 211 1257899999999999965 58775444
No 242
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.64 E-value=0.019 Score=55.69 Aligned_cols=112 Identities=14% Similarity=0.144 Sum_probs=76.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE--EEccccc---cc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW----PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV--HIGDVFS---PS 210 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v--~~gDa~~---~l 210 (345)
+...++++|||.|.=++.|++.. ...+...|||+.+.++.+.+.+.... -|.+++ +.+|-.+ ++
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-------~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-------FSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc-------CCCeEEEEEEecHHHHHhhc
Confidence 45579999999999888777653 24789999999999999988775221 356666 6776544 44
Q ss_pred cc--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEEEecC
Q 038076 211 ED--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMVNCGG 259 (345)
Q Consensus 211 ~~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvvn~~~ 259 (345)
.. ......+|+.=..+-+.. .+-....|++.+++ .|+|||.+++-+-.
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred ccccccCCccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 32 123456766533222222 22345679999999 99999999886643
No 243
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.0042 Score=58.00 Aligned_cols=113 Identities=16% Similarity=0.028 Sum_probs=79.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCC------------CEEEEEECCHHHHHHHHHhcCCCCC-------------C-----
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPS------------LKLEGWEIDEILIDKVRDYFGLSDL-------------E----- 190 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~------------~~v~~VEidp~vi~~A~~~f~~~~~-------------~----- 190 (345)
.-.|+++|.|+|.....+.+.++. ..++.+|.+|....-.+..--.+++ .
T Consensus 59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~ 138 (252)
T COG4121 59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA 138 (252)
T ss_pred ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence 346888999999877766654332 4678899887544322211000110 0
Q ss_pred CCCC-CCCcEEEEEcccccccccCCC---cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 191 KPTA-TGGVLQVHIGDVFSPSEDASG---RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 191 ~~~~-~~~rv~v~~gDa~~~l~~~~~---~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
.... ..-.+++++||+++.+...++ ++|+.++|.|++..-| .+++.|++..++++..|||.++
T Consensus 139 r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP-~mW~~e~l~~~a~~~~~~~~l~ 205 (252)
T COG4121 139 AAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNP-EMWEDELLNLMARIPYRDPTLA 205 (252)
T ss_pred HhhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCCh-hhccHHHHHHHHhhcCCCCcee
Confidence 0011 245688999999999877666 8999999999975444 8899999999999999999995
No 244
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.42 E-value=0.025 Score=52.42 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=74.8
Q ss_pred CCCCCEEEEeecccHHHHHHHHh-CCCCEEEEEECCH----HHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL-WPSLKLEGWEIDE----ILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~-~p~~~v~~VEidp----~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~- 212 (345)
.+..+||-||.+.|+...++... -|+.-|.+||-++ +++.+|++ .+++--|++||+.--+.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------------RtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------------RTNIIPIIEDARHPAKYR 221 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------------cCCceeeeccCCCchhee
Confidence 46689999999999998888775 4678999999986 45555555 45678899999974222
Q ss_pred -CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 213 -ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-.-.|+||.|+..+. .++-..-++.--|+++|-+++.+-....
T Consensus 222 mlVgmVDvIFaDvaqpd------q~RivaLNA~~FLk~gGhfvisikanci 266 (317)
T KOG1596|consen 222 MLVGMVDVIFADVAQPD------QARIVALNAQYFLKNGGHFVISIKANCI 266 (317)
T ss_pred eeeeeEEEEeccCCCch------hhhhhhhhhhhhhccCCeEEEEEecccc
Confidence 2347799998875432 2233334556679999999887655443
No 245
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.42 E-value=0.014 Score=53.09 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=57.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH----------hcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD----------YFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~----------~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
+.+....++||+|.|....+..-..+-.+..+||+.|...+.|++ .++. ...+++++.+|..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~--------~~~~v~l~~gdfl 111 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK--------RPGKVELIHGDFL 111 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-----------EEEEECS-TT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc--------ccccceeeccCcc
Confidence 345667899999999988777655555669999999999988864 2222 2467899999866
Q ss_pred cc--cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 208 SP--SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 208 ~~--l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+. ....-..-|+|+++.+. ..+ ...+.+......|++|-.++
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~---F~~--~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTC---FDP--DLNLALAELLLELKPGARII 155 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TT---T-H--HHHHHHHHHHTTS-TT-EEE
T ss_pred ccHhHhhhhcCCCEEEEeccc---cCH--HHHHHHHHHHhcCCCCCEEE
Confidence 42 11112457999985432 011 11223444556677776655
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.40 E-value=0.016 Score=55.64 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=45.8
Q ss_pred CCCEEEEeecccHH-HHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCC-CCCCCCCCCCcEEEEEccccc----ccccCC
Q 038076 141 NGPIAIYGLGGGTA-AHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLS-DLEKPTATGGVLQVHIGDVFS----PSEDAS 214 (345)
Q Consensus 141 p~~VLiIG~G~G~~-~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-~~~~~~~~~~rv~v~~gDa~~----~l~~~~ 214 (345)
.-++|+||+|+..+ +....+.+ +.++++.|||+..++.|++..... .+ ..+++++...-.. -+....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L------~~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNL------ESRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-------TTTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhcccc------ccceEEEEcCCccccchhhhccc
Confidence 34789999997754 43333443 799999999999999999987544 32 5788888663322 233346
Q ss_pred CcccEEEEc
Q 038076 215 GRYAGIVVD 223 (345)
Q Consensus 215 ~~yD~Ii~D 223 (345)
+.||+.+|.
T Consensus 176 e~~dftmCN 184 (299)
T PF05971_consen 176 ERFDFTMCN 184 (299)
T ss_dssp S-EEEEEE-
T ss_pred ceeeEEecC
Confidence 799999994
No 247
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.40 E-value=0.029 Score=47.86 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=60.2
Q ss_pred EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC-cccEEEEcC-CCCCC----CCCCcchHHH
Q 038076 166 KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG-RYAGIVVDL-FSEGK----VLPQLEEVAT 239 (345)
Q Consensus 166 ~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~-~yD~Ii~D~-f~~~~----~p~~l~t~ef 239 (345)
+|.+.||.++.++.+++.+.-... ..|++++++.=.+..+..++ +.|+++-.+ |-+++ ....-.|.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~------~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A 74 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL------EDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKA 74 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-------GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC------CCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence 589999999999999998853321 34899998765554333444 899998764 22221 1122467889
Q ss_pred HHHHHhccCCCcEEEEEecCCCC
Q 038076 240 WLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 240 ~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++.+.++|+|||++++-+.....
T Consensus 75 l~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--STC
T ss_pred HHHHHHhhccCCEEEEEEeCCCC
Confidence 99999999999999988876665
No 248
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.35 E-value=0.0099 Score=53.41 Aligned_cols=102 Identities=21% Similarity=0.226 Sum_probs=73.4
Q ss_pred ccccCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 135 LPAIVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 135 l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
.|.....++||++|.|+|..+....+. ....|...|++|..+...+-+-... +-.+.+.+.|..- .+
T Consensus 74 ~PetVrgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~an--------gv~i~~~~~d~~g----~~ 140 (218)
T COG3897 74 HPETVRGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAAN--------GVSILFTHADLIG----SP 140 (218)
T ss_pred CccccccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhc--------cceeEEeeccccC----CC
Confidence 344456799999999999988876653 5689999999999888776655432 3467778777654 57
Q ss_pred CcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+. |+|-... .....+. ++++|...|..++
T Consensus 141 ~~~Dl~LagDlfy~~~-----~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 141 PAFDLLLAGDLFYNHT-----EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred cceeEEEeeceecCch-----HHHHHHH-HHHHHHhCCCEEE
Confidence 89999986 6655322 1122333 7888999998766
No 249
>PTZ00357 methyltransferase; Provisional
Probab=96.34 E-value=0.014 Score=61.20 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=69.5
Q ss_pred CEEEEeecccHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhc-CCCCCCC-CCCCCCcEEEEEcccccccccC---
Q 038076 143 PIAIYGLGGGTAAHLMLDLW----PSLKLEGWEIDEILIDKVRDYF-GLSDLEK-PTATGGVLQVHIGDVFSPSEDA--- 213 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~----p~~~v~~VEidp~vi~~A~~~f-~~~~~~~-~~~~~~rv~v~~gDa~~~l~~~--- 213 (345)
.|+++|+|=|-+....++.. -..+|.+||-||..+...+... ....+.+ ....+.+|+++..|+|+|-...
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 48999999998877666532 2479999999966333333222 1122211 1223678999999999983211
Q ss_pred -------CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCC----CcE
Q 038076 214 -------SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMP----NGR 252 (345)
Q Consensus 214 -------~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~p----gGv 252 (345)
-++.|+||..+-.. +-..-.+.|.+.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGS--FGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGS--LGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcc--cccccCCHHHHHHHHHhhhhhcccccc
Confidence 13799999755221 11223567888888888887 887
No 250
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.18 E-value=0.02 Score=52.37 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=81.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
...++.+|||--+.++.++.+..+...++++|+++.-++.|.+++.-..+ .+++++..+|+..-++ .+...|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l------~~~i~vr~~dgl~~l~-~~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL------SERIDVRLGDGLAVLE-LEDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC------cceEEEeccCCccccC-ccCCcCE
Confidence 34569999999999999999998999999999999999999999975543 6899999999987764 4668999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|++-.-.+ ..-.+++++-++.|+--=.++
T Consensus 89 ivIAGMGG------~lI~~ILee~~~~l~~~~rlI 117 (226)
T COG2384 89 IVIAGMGG------TLIREILEEGKEKLKGVERLI 117 (226)
T ss_pred EEEeCCcH------HHHHHHHHHhhhhhcCcceEE
Confidence 98843222 233578888888887543444
No 251
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.16 E-value=0.0091 Score=54.54 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=52.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---cCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---DASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~~~~~ 216 (345)
.+..|++--||+|..+.+...++ ..|.++||||.=+..|+.+...-+. ..|+++++||..+... .....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNaeiYGI------~~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAEVYGV------PDRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccceeecC------CceeEEEechHHHHHHHHhhhhhe
Confidence 45667775555444444444333 4799999999999999998865432 3499999999877543 34556
Q ss_pred ccEEEEc
Q 038076 217 YAGIVVD 223 (345)
Q Consensus 217 yD~Ii~D 223 (345)
||+++.-
T Consensus 166 ~~~vf~s 172 (263)
T KOG2730|consen 166 YDCVFLS 172 (263)
T ss_pred eeeeecC
Confidence 7888763
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.15 E-value=0.025 Score=54.04 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=62.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc----C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----~ 213 (345)
.+..-.++.=.|+|..++.+++.+|. .+++++|-||..++.|++.+.- .++|++++++...++-.. .
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~--------~~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE--------FDGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc--------cCCcEEEEeCcHHHHHHHHHhcC
Confidence 34567778888999999999998875 5699999999999999998742 257999999987665332 2
Q ss_pred CCcccEEEEcC
Q 038076 214 SGRYAGIVVDL 224 (345)
Q Consensus 214 ~~~yD~Ii~D~ 224 (345)
.+++|.|+.|+
T Consensus 94 i~~vDGiL~DL 104 (314)
T COG0275 94 IGKVDGILLDL 104 (314)
T ss_pred CCceeEEEEec
Confidence 46899999987
No 253
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.11 E-value=0.042 Score=52.34 Aligned_cols=110 Identities=17% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|+++|+| ||++++.+.+......|++.|.+..-.+.+.+ ++... ... + +.........|
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~-lgv~d--------~~~-----~--~~~~~~~~~aD 66 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE-LGVID--------ELT-----V--AGLAEAAAEAD 66 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh-cCccc--------ccc-----c--chhhhhcccCC
Confidence 3579999999 89999999987666778889988888887654 33321 000 0 11112346689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPG 295 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~ 295 (345)
+||+-+ |. -.+.++++++...|++|-+++ .+.+.. ...++++++..++
T Consensus 67 ~Vivav------Pi-~~~~~~l~~l~~~l~~g~iv~-Dv~S~K---------------------~~v~~a~~~~~~~ 114 (279)
T COG0287 67 LVIVAV------PI-EATEEVLKELAPHLKKGAIVT-DVGSVK---------------------SSVVEAMEKYLPG 114 (279)
T ss_pred EEEEec------cH-HHHHHHHHHhcccCCCCCEEE-eccccc---------------------HHHHHHHHHhccC
Confidence 999843 22 256788998888888877663 544333 3677778888865
No 254
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.05 E-value=0.021 Score=55.01 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=56.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc---c--C
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE---D--A 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~---~--~ 213 (345)
.+....++.=+|+|..+..+++..|+.++.++|.||++++.|++.+.- .++|+++++++..++-. . .
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~--------~~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK--------FDDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC--------CCTTEEEEES-GGGHHHHHHHTTT
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh--------ccceEEEEeccHHHHHHHHHHccC
Confidence 345667888889999999999988889999999999999999987752 26799999998777532 1 2
Q ss_pred CCcccEEEEcC
Q 038076 214 SGRYAGIVVDL 224 (345)
Q Consensus 214 ~~~yD~Ii~D~ 224 (345)
..++|.|+.|+
T Consensus 91 ~~~~dgiL~DL 101 (310)
T PF01795_consen 91 INKVDGILFDL 101 (310)
T ss_dssp TS-EEEEEEE-
T ss_pred CCccCEEEEcc
Confidence 46899999997
No 255
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.00 E-value=0.021 Score=51.88 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=70.8
Q ss_pred EEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEc
Q 038076 144 IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVD 223 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D 223 (345)
|.+|||--|.++.+|.+.....++.++||++.-++.|++......+ ..+++++.+||.+-+.. .+..|.|++-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l------~~~i~~rlgdGL~~l~~-~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL------EDRIEVRLGDGLEVLKP-GEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-------TTTEEEEE-SGGGG--G-GG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------cccEEEEECCcccccCC-CCCCCEEEEe
Confidence 6899999999999999976667999999999999999987753332 46899999999998753 3447999874
Q ss_pred CCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.-.+ ....++++.....++..-.+++.-.
T Consensus 74 GMGG------~lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 74 GMGG------ELIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp EE-H------HHHHHHHHHTGGGGTT--EEEEEES
T ss_pred cCCH------HHHHHHHHhhHHHhccCCeEEEeCC
Confidence 3221 2456778877777776667776433
No 256
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.99 E-value=0.014 Score=49.61 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=40.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhcC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDL----WPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.++.+|+++|+|-|.+++.+... .++.+|++||.++..++.+.++-.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 45788999999999999999872 267999999999999999887653
No 257
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.0075 Score=60.83 Aligned_cols=106 Identities=10% Similarity=0.083 Sum_probs=83.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC---CC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA---SG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~---~~ 215 (345)
++-+||+-=+++|.-+....+..|+ .+|++-|.|+..++..+++-.+.. .+..+..+++|+...+-.. .+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~------v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG------VEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC------chhhcccccchHHHHHHhcccccc
Confidence 4567888767778666655555565 799999999999998888776553 2567999999999876543 48
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+|=+|.|... ..|++.+-+.++.||++.+.+..
T Consensus 183 ~FDvIDLDPyGs~--------s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 183 FFDVIDLDPYGSP--------SPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred ccceEecCCCCCc--------cHHHHHHHHHhhcCCEEEEEecc
Confidence 9999999988853 36899999999999999987654
No 258
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.96 E-value=0.013 Score=54.56 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=55.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.+|.+|++||||-.-++.-.....|+..+.+.|||..+++....++..- +++.++.+.|...- ..+...|
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l--------~~~~~~~v~Dl~~~--~~~~~~D 173 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL--------GVPHDARVRDLLSD--PPKEPAD 173 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT--------T-CEEEEEE-TTTS--HTTSEES
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh--------CCCcceeEeeeecc--CCCCCcc
Confidence 4589999999999988887666667899999999999999999988643 46788888887653 2567899
Q ss_pred EEEE
Q 038076 219 GIVV 222 (345)
Q Consensus 219 ~Ii~ 222 (345)
+.++
T Consensus 174 laLl 177 (251)
T PF07091_consen 174 LALL 177 (251)
T ss_dssp EEEE
T ss_pred hhhH
Confidence 9986
No 259
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.94 E-value=0.028 Score=55.03 Aligned_cols=99 Identities=13% Similarity=0.049 Sum_probs=69.1
Q ss_pred CCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccC-CCcc
Q 038076 141 NGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDA-SGRY 217 (345)
Q Consensus 141 p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~-~~~y 217 (345)
..+|+++|+| -|.++..+++..+..+|.++|++++-+++|+++++..... ++.-+ |...-+ +.+ ...+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~-----~~~~~----~~~~~~~~~t~g~g~ 239 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV-----NPSED----DAGAEILELTGGRGA 239 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee-----cCccc----cHHHHHHHHhCCCCC
Confidence 3479999999 6777778888888899999999999999999988643110 11111 222212 112 3479
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
|++|--.- +...++.+.+.++++|.+++.-.
T Consensus 240 D~vie~~G----------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 240 DVVIEAVG----------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred CEEEECCC----------CHHHHHHHHHHhcCCCEEEEEec
Confidence 99985321 24588999999999999876543
No 260
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.79 E-value=0.043 Score=49.88 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=51.6
Q ss_pred CCCCCEEEEeecccHHHHHHH---HhC-CCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccc----
Q 038076 139 VPNGPIAIYGLGGGTAAHLML---DLW-PSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---- 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~---~~~-p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---- 209 (345)
.+|..|+++|.--|..+.+.+ +.. +..+|.+||||..-.. .+.+.-.+ .+|+++++||..+-
T Consensus 31 ~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~---------~~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 31 LKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM---------SPRITFIQGDSIDPEIVD 101 (206)
T ss_dssp H--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-------------TTEEEEES-SSSTHHHH
T ss_pred hCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc---------cCceEEEECCCCCHHHHH
Confidence 478999999975444444333 344 6789999999754332 22222111 47999999998752
Q ss_pred -ccc--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 210 -SED--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 210 -l~~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++. ......+||.|..... . ....-++.....+++|+.+++
T Consensus 102 ~v~~~~~~~~~vlVilDs~H~~---~--hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 102 QVRELASPPHPVLVILDSSHTH---E--HVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp TSGSS----SSEEEEESS-------S--SHHHHHHHHHHT--TT-EEEE
T ss_pred HHHHhhccCCceEEEECCCccH---H--HHHHHHHHhCccCCCCCEEEE
Confidence 111 2345668888874321 1 223446668899999999886
No 261
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.58 E-value=0.14 Score=50.97 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=92.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
+..|||++.+-.|.=+.+++... ....|.+-|-+..-++.-+..+.--. -.+..+...|+++|-+. -..+|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG-------v~ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG-------VTNTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC-------CCceEEEccCcccccccccCccc
Confidence 56899999987665555555443 34789999999988887776553111 24577889999988533 23489
Q ss_pred cEEEEcCCCCCC-C---CC--------------CcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 218 AGIVVDLFSEGK-V---LP--------------QLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 218 D~Ii~D~f~~~~-~---p~--------------~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
|-|++|++..+. + +. .-+.++.+..+.+.+++||+++...-+...
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~----------------- 376 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV----------------- 376 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch-----------------
Confidence 999999988652 1 11 123567788888999999999987666554
Q ss_pred HHHHHHHHHHHHHCCCCEE
Q 038076 280 WMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~v~ 298 (345)
.--..+++..-+-|| .+.
T Consensus 377 ~ENE~vV~yaL~K~p-~~k 394 (460)
T KOG1122|consen 377 EENEAVVDYALKKRP-EVK 394 (460)
T ss_pred hhhHHHHHHHHHhCC-ceE
Confidence 123456666666777 444
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.57 E-value=0.14 Score=52.16 Aligned_cols=105 Identities=12% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC----
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS---- 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~---- 214 (345)
...+-++++-||+|+++..+.+ +-.+|.+||++|+-++-|++.-..++ -.+.++|.|-+.+-+....
T Consensus 382 ~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~Ng-------isNa~Fi~gqaE~~~~sl~~~~~ 452 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQING-------ISNATFIVGQAEDLFPSLLTPCC 452 (534)
T ss_pred CCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcC-------ccceeeeecchhhccchhcccCC
Confidence 3457799999999999999886 46799999999999999999876655 3578999996665543321
Q ss_pred Cccc-EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYA-GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD-~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
..=+ +.|+|....+ ....+++.+++.=++.=.+.+.|.
T Consensus 453 ~~~~~v~iiDPpR~G------lh~~~ik~l~~~~~~~rlvyvSCn 491 (534)
T KOG2187|consen 453 DSETLVAIIDPPRKG------LHMKVIKALRAYKNPRRLVYVSCN 491 (534)
T ss_pred CCCceEEEECCCccc------ccHHHHHHHHhccCccceEEEEcC
Confidence 2335 5667754432 334567777766667766665554
No 263
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.33 Score=47.65 Aligned_cols=125 Identities=12% Similarity=0.090 Sum_probs=81.7
Q ss_pred HHhhcccc----CCCCCEEEEeecccHHHHHHHHh-CC---CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 038076 131 EFVSLPAI----VPNGPIAIYGLGGGTAAHLMLDL-WP---SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH 202 (345)
Q Consensus 131 ~~~~l~~~----~~p~~VLiIG~G~G~~~~~l~~~-~p---~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~ 202 (345)
+..++|.+ .+..+||++.+..|+=+..+++. ++ ...|.+-|.|+.-...-+.-...-+ .+.+.+.
T Consensus 142 avSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-------~~~~~v~ 214 (375)
T KOG2198|consen 142 AVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-------SPNLLVT 214 (375)
T ss_pred hhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-------Ccceeee
Confidence 34456532 46789999999988777666654 22 2389999999988876655443221 4555566
Q ss_pred Ecccccccc--------cCCCcccEEEEcCCCCCC-----CC--------------CCcchHHHHHHHHhccCCCcEEEE
Q 038076 203 IGDVFSPSE--------DASGRYAGIVVDLFSEGK-----VL--------------PQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 203 ~gDa~~~l~--------~~~~~yD~Ii~D~f~~~~-----~p--------------~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..|+-.+-. .....||=|++|+...+. .+ -+......+....+.|++||.+|.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 556554421 134689999999976432 01 011234567788899999999998
Q ss_pred EecCCCC
Q 038076 256 NCGGIDG 262 (345)
Q Consensus 256 n~~~~~~ 262 (345)
..-+-.+
T Consensus 295 STCSLnp 301 (375)
T KOG2198|consen 295 STCSLNP 301 (375)
T ss_pred eccCCCc
Confidence 7665554
No 264
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.25 E-value=0.13 Score=52.94 Aligned_cols=111 Identities=18% Similarity=0.233 Sum_probs=62.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-CCCCCCC----cEEEEEccc----cc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-KPTATGG----VLQVHIGDV----FS 208 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~~~~~~~----rv~v~~gDa----~~ 208 (345)
.++.+|+++|+| .|..+...++... .+|.++|++++..+.+++. +..... +....+. ..+-..+|. ++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 368999999999 5666666666654 5899999999999999984 422000 0000000 000000010 00
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+.+.-+.+|+||.-+..+....+.+. .+++.+.++|||+++.
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP~li----t~~~v~~mkpGgvIVd 283 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAPKLI----TAEMVASMKPGSVIVD 283 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCcchH----HHHHHHhcCCCCEEEE
Confidence 011112469999975544332112222 3667788899999763
No 265
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.15 E-value=0.12 Score=50.48 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.++|+++|+| -|.++.++++... .+|++++++++-.+.|++.-. . .++..---+.++...+.+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGA-d------------~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGA-D------------HVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCC-c------------EEEEcCCchhhHHhHhhCc
Confidence 56889999976 4577777777654 999999999999999998642 1 2332111122233334599
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|+.-+. ...+....+.|+++|.+++.=
T Consensus 232 ~ii~tv~-----------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 232 AIIDTVG-----------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEEECCC-----------hhhHHHHHHHHhcCCEEEEEC
Confidence 9996432 235777788999999988653
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.13 E-value=0.044 Score=49.58 Aligned_cols=114 Identities=13% Similarity=0.060 Sum_probs=77.9
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCcccE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~yD~ 219 (345)
-...+||||=|.+...|.-.+|+.-|.+.||.-.|.+..++....-........-+++.+....+..|+.+ ...+-+=
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 45899999999999999999999999999999999988776542111000011256788999999999876 2333333
Q ss_pred EEEcCCCCC----CCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEG----KVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~----~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++.-..++. .-.....+...+....-.|++||++..
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 333222221 112335566678888889999999853
No 267
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.07 E-value=0.043 Score=50.84 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=48.2
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC----CCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG----LSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~----~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+||+.=+|-|.-+..+... +.+|+++|-+|.+..+.++-+. -++. ....-.|++++++|+.+||+....+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~--~~~~~~ri~l~~~d~~~~L~~~~~s~ 152 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPEL--LAEAMRRIQLIHGDALEYLRQPDNSF 152 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTT--HHHHHHHEEEEES-CCCHCCCHSS--
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHh--HHHHHhCCEEEcCCHHHHHhhcCCCC
Confidence 48999888888777666643 6799999999999887663221 1110 00012489999999999999667899
Q ss_pred cEEEEcC
Q 038076 218 AGIVVDL 224 (345)
Q Consensus 218 D~Ii~D~ 224 (345)
|+|.+|.
T Consensus 153 DVVY~DP 159 (234)
T PF04445_consen 153 DVVYFDP 159 (234)
T ss_dssp SEEEE--
T ss_pred CEEEECC
Confidence 9999985
No 268
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.90 E-value=0.11 Score=50.09 Aligned_cols=107 Identities=9% Similarity=0.024 Sum_probs=69.1
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
...+||++|+| .|..+...++.+...+|.++|+++.-+++|++ ||.....+ ..+-. ..++.++-++. ....
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~----~~~~~-~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDP----SSHKS-SPQELAELVEKALGKKQ 242 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEee----ccccc-cHHHHHHHHHhhccccC
Confidence 45789999999 67777777777888999999999999999999 87543110 00000 12233333322 2355
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+|+.|--. . ..-.++.....++.+|.+++--++.+.
T Consensus 243 ~d~~~dCs-G---------~~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 243 PDVTFDCS-G---------AEVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CCeEEEcc-C---------chHHHHHHHHHhccCCEEEEeccCCCc
Confidence 88877321 1 123466677889999996665555443
No 269
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.74 E-value=0.14 Score=46.72 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
...|.++|||.+.++..+. ...+|...|+-. . +++ |+..|..+. .-.++..|++
T Consensus 73 ~~viaD~GCGdA~la~~~~---~~~~V~SfDLva-------------~-------n~~--Vtacdia~v-PL~~~svDv~ 126 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVP---NKHKVHSFDLVA-------------P-------NPR--VTACDIANV-PLEDESVDVA 126 (219)
T ss_dssp TS-EEEES-TT-HHHHH-----S---EEEEESS--------------S-------STT--EEES-TTS--S--TT-EEEE
T ss_pred CEEEEECCCchHHHHHhcc---cCceEEEeeccC-------------C-------CCC--EEEecCccC-cCCCCceeEE
Confidence 3579999999999996653 235788888621 1 234 666888653 3357899999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+..+---++ --.+|+.++.|.|+|||.+.+-
T Consensus 127 VfcLSLMGT-----n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 127 VFCLSLMGT-----NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp EEES---SS------HHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEhhhhCC-----CcHHHHHHHHheeccCcEEEEE
Confidence 886643221 2368999999999999998764
No 270
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.66 E-value=0.47 Score=44.93 Aligned_cols=122 Identities=11% Similarity=-0.040 Sum_probs=80.2
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIV 221 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii 221 (345)
+++++-||.|.+...+.+. .-..+.++|+|+..++..++++.. .++.+|..++.... ...+|+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------------CCccCccccCchhhcCCCCCEEE
Confidence 6899999999998887764 345688899999999999988741 15678888875433 46799999
Q ss_pred EcCCCCCC--------CCCC--cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 222 VDLFSEGK--------VLPQ--LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 222 ~D~f~~~~--------~p~~--l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
.+....+. .-.. -.-.++++ +.+.++|.=+++=|+..-... ++...++.+++.|++
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~g~~~~-------------~~~~~~~~i~~~l~~ 133 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIR-ILKEKKPKYFLLENVKGLLTH-------------DNGNTLKVILNTLEE 133 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHHH-HHHhcCCCEEEEEcCcchhcc-------------CchHHHHHHHHHHHh
Confidence 87655321 0000 01224443 444568987777788765431 011456677777765
Q ss_pred H
Q 038076 292 A 292 (345)
Q Consensus 292 ~ 292 (345)
.
T Consensus 134 ~ 134 (275)
T cd00315 134 L 134 (275)
T ss_pred C
Confidence 3
No 271
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=0.38 Score=44.62 Aligned_cols=100 Identities=11% Similarity=-0.047 Sum_probs=69.0
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
..+.+.+|+||.-+|.++..+++. ...+|.+||.--.-+.. . ...+||+.++..-=..++.. ..+
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~--------k----LR~d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHW--------K----LRNDPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCH--------h----HhcCCcEEEEecCChhhCCHHHccc
Confidence 357789999999999999999974 56899999973222211 1 12488999888744444432 345
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..|+|++|+.-- .-...+-.+...|+|+|.++.=+
T Consensus 144 ~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 144 KPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence 789999997331 12346777888889988876543
No 272
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.47 E-value=0.24 Score=50.28 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=72.6
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+++.+|||---+...+.+ .....|+.+|+++.+++.....-. . ..+..++...|...- .-.++.||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~-~G~~dI~~iD~S~V~V~~m~~~~~-~-------~~~~~~~~~~d~~~l-~fedESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYK-NGFEDITNIDSSSVVVAAMQVRNA-K-------ERPEMQMVEMDMDQL-VFEDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHh-cCCCCceeccccHHHHHHHHhccc-c-------CCcceEEEEecchhc-cCCCcceeEEEe
Confidence 899999998877666554 244789999999999998776543 2 246688888888774 346899999985
Q ss_pred ----cCCCCCCCCCCc---chHHHHHHHHhccCCCcEEEEE
Q 038076 223 ----DLFSEGKVLPQL---EEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 223 ----D~f~~~~~p~~l---~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|....+. ...+ .-...+.++.+.|+++|.++.-
T Consensus 121 kGtlDal~~de-~a~~~~~~v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 121 KGTLDALFEDE-DALLNTAHVSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred cCccccccCCc-hhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence 3322221 1112 2335678899999999996543
No 273
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.44 E-value=0.57 Score=44.28 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=59.0
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| ||+++..+.+. +.+|.++|.+++..+.+.+..... ....|. + .-+..|+|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~-------------~~~~~~-~----~~~~aDlV 61 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVD-------------EASTDL-S----LLKDCDLV 61 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcc-------------cccCCH-h----HhcCCCEE
Confidence 68999999 67888888764 568999999999888776532110 011111 1 12467999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+-+.. . ...+.++.+...++++ .+++++.+..
T Consensus 62 ilavp~------~-~~~~~~~~l~~~l~~~-~ii~d~~Svk 94 (279)
T PRK07417 62 ILALPI------G-LLLPPSEQLIPALPPE-AIVTDVGSVK 94 (279)
T ss_pred EEcCCH------H-HHHHHHHHHHHhCCCC-cEEEeCcchH
Confidence 985422 1 3456788888888776 5556665443
No 274
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.34 E-value=0.24 Score=47.86 Aligned_cols=96 Identities=9% Similarity=0.111 Sum_probs=59.0
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.++|+++|+| .|..+.++++.....+|.+++.+++-.+.+++ ++.... +.....|..+.... ...+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa~~v---------i~~~~~~~~~~~~~-~g~~D 237 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGADKL---------VNPQNDDLDHYKAE-KGYFD 237 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCCcEE---------ecCCcccHHHHhcc-CCCCC
Confidence 46789999865 44555566665544479999999999999988 443210 00011122222222 23589
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|| |.... .+.++.+.+.|+++|.++.-
T Consensus 238 ~vi-d~~G~---------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 238 VSF-EVSGH---------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEE-ECCCC---------HHHHHHHHHHhhcCCEEEEE
Confidence 887 33221 24577788899999998743
No 275
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.33 E-value=0.037 Score=53.93 Aligned_cols=115 Identities=19% Similarity=0.138 Sum_probs=70.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
.|+++|++|.|.|+...++...+|+ ..++.+|.+|.+-++...--.-... +..+-|..-+..|-..+ . ..+.|+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~l-p-~ad~yt 187 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST---EKTDWRASDVTEDRLSL-P-AADLYT 187 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc---ccCCCCCCccchhccCC-C-ccceee
Confidence 5889999999999999888888997 6889999999988876542211100 01122333333342222 1 356799
Q ss_pred EEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||+ |---+...+.++ ...++.+...++|||.+++--.+..
T Consensus 188 l~i~~~eLl~d~~ek~i--~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 188 LAIVLDELLPDGNEKPI--QVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhhhhhhccccCcchH--HHHHHHHHHhccCCCeEEEEeCCCc
Confidence 8875 211111111222 2267888889999999876544444
No 276
>PRK11524 putative methyltransferase; Provisional
Probab=94.29 E-value=0.074 Score=50.58 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=44.4
Q ss_pred CCcEEEEEccccccccc-CCCcccEEEEcCCCCC--C---CCCCc-------chHHHHHHHHhccCCCcEEEEEec
Q 038076 196 GGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEG--K---VLPQL-------EEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~--~---~p~~l-------~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
....+++++|..++++. .++++|+|++|.+-.. . ..... ...+++.++.+.|+|||.+++++.
T Consensus 6 ~~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 6 NEAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 34568999999998765 4678999999964211 0 00111 124688999999999999998644
No 277
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=94.17 E-value=0.14 Score=48.02 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCCCEEEEeecc--cHHH--HHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGG--GTAA--HLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~--G~~~--~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
+...||+.+|.|+ |..+ .-|++.+| +.-+.-.||++ |-. |. -..+.+|-+.+. .
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d--------~vS----------Da-~~~~~~Dc~t~~--~ 118 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD--------YVS----------DA-DQSIVGDCRTYM--P 118 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B-----------SS-SEEEES-GGGEE--E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh--------hcc----------cc-CCceeccccccC--C
Confidence 4578999999983 2222 24455576 46777788743 321 12 246788988884 5
Q ss_pred CCcccEEEEcCCCCCC-------CCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 214 SGRYAGIVVDLFSEGK-------VLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~-------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
+.++|+||.|.|++.. ....-+..-+..-++++|+-||-+++-+...
T Consensus 119 ~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 119 PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 7999999999996432 1112222334556789999999999887643
No 278
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.12 E-value=0.43 Score=49.05 Aligned_cols=114 Identities=17% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP----SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--- 212 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p----~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--- 212 (345)
+..+|.+--||+|++.....++.. ...+.+.|+++....+|+-++.+.+.+ . .+.+.++|...-...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~-----~-~~~i~~~dtl~~~~~~~~ 259 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE-----G-DANIRHGDTLSNPKHDDK 259 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC-----c-cccccccccccCCccccc
Confidence 445899999999987776665432 378999999999999999988766531 1 456777776654322
Q ss_pred -CCCcccEEEEcCCCC-C------------------C-CCCCcch-HHHHHHHHhccCCCcEEEEEecC
Q 038076 213 -ASGRYAGIVVDLFSE-G------------------K-VLPQLEE-VATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 213 -~~~~yD~Ii~D~f~~-~------------------~-~p~~l~t-~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
..++||.|+...+.. . . +++.-.. ..|++.+..+|+|||..++-+..
T Consensus 260 ~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 260 DDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred CCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 347799988754321 0 0 1111222 67899999999999965554443
No 279
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.97 E-value=0.27 Score=47.44 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=69.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++.+|.+||+| .|+.+.-++-. -+..|+..|+|.+-++.-...|+ .|++........+ +..-.++|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~-----------~rv~~~~st~~~i-ee~v~~aD 233 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFG-----------GRVHTLYSTPSNI-EEAVKKAD 233 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhC-----------ceeEEEEcCHHHH-HHHhhhcc
Confidence 57899999988 56655555432 36899999999999988877774 4677776666654 33457899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
++|.-+--++.-.+.|.++|. .+.++||++++
T Consensus 234 lvIgaVLIpgakaPkLvt~e~----vk~MkpGsViv 265 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREM----VKQMKPGSVIV 265 (371)
T ss_pred EEEEEEEecCCCCceehhHHH----HHhcCCCcEEE
Confidence 998755444443456766654 45788999876
No 280
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.56 E-value=0.39 Score=47.56 Aligned_cols=104 Identities=19% Similarity=0.204 Sum_probs=59.0
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
++.+|+++|+| .|..+...++.. +.+|+++|.+++-.+.+.+.++.. +.....+. +.+.+.-+.+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~-----------v~~~~~~~-~~l~~~l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGR-----------IHTRYSNA-YEIEDAVKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCce-----------eEeccCCH-HHHHHHHccCC
Confidence 56789999987 444444545444 468999999998877666555421 11111111 11222235789
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+||.-..-+....+.+.+.+.++ .++|++++ +++....
T Consensus 233 vVI~a~~~~g~~~p~lit~~~l~----~mk~g~vI-vDva~d~ 270 (370)
T TIGR00518 233 LLIGAVLIPGAKAPKLVSNSLVA----QMKPGAVI-VDVAIDQ 270 (370)
T ss_pred EEEEccccCCCCCCcCcCHHHHh----cCCCCCEE-EEEecCC
Confidence 99975432222123466666664 46777664 4655433
No 281
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.26 E-value=1 Score=43.15 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=57.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |++++..+.+.....+|+++|.+++-.+.+++. +.. .. ...+..+. -+..|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~-g~~-----------~~-~~~~~~~~----~~~aDv 69 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL-GLG-----------DR-VTTSAAEA----VKGADL 69 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC-CCC-----------ce-ecCCHHHH----hcCCCE
Confidence 579999998 456777766542225899999999988877653 211 01 11122122 246899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
||+-+.. . ...++++.+...++++.++ +++.
T Consensus 70 Viiavp~------~-~~~~v~~~l~~~l~~~~iv-~dvg 100 (307)
T PRK07502 70 VILCVPV------G-ASGAVAAEIAPHLKPGAIV-TDVG 100 (307)
T ss_pred EEECCCH------H-HHHHHHHHHHhhCCCCCEE-EeCc
Confidence 9985422 1 2356777787888888755 4553
No 282
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=92.93 E-value=0.1 Score=47.95 Aligned_cols=61 Identities=25% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
...-|..||-|.|.+++.++.. ...++++||+|+..+.--+-.-... +.++.+|++|+..|
T Consensus 50 ~~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EAa--------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEAA--------PGKLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhcC--------CcceEEecccccee
Confidence 4566899999999999999974 4579999999998887544322222 46899999999876
No 283
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.86 E-value=0.12 Score=49.09 Aligned_cols=108 Identities=11% Similarity=0.074 Sum_probs=65.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC---CCCCCCCCC-------CCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL---SDLEKPTAT-------GGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~---~~~~~~~~~-------~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..+.+. +.+|+++|.|++.++.+.++... ......... ..+++.. .|..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH-
Confidence 579999998 56676666653 57899999999999987654210 000000000 0122211 22211
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-+.-|+||.-++. .+ ...++++.+.+.++|+.++++|..+.+.
T Consensus 78 ---~~~~aD~Vi~avpe------~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~ 122 (288)
T PRK09260 78 ---AVADADLVIEAVPE------KLELKKAVFETADAHAPAECYIATNTSTMSP 122 (288)
T ss_pred ---hhcCCCEEEEeccC------CHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 23567999975543 22 2457788888899998888888876553
No 284
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.83 E-value=1.9 Score=42.30 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=54.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|.+||+| ||++++.+.+.. ..+.+++.|+.-.+.++.. +..- ..-...| +...-+..|+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G--~~v~i~~~~~~~~~~~~a~-~~~~----------~~~~~~~----~~~~~~~aDl 63 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAG--PDVFIIGYDPSAAQLARAL-GFGV----------IDELAAD----LQRAAAEADL 63 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcC--CCeEEEEeCCCHHHHHHHh-cCCC----------CcccccC----HHHHhcCCCE
Confidence 468999999 788888887653 3555666666555444321 1110 0000111 1122356899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvvn~~~~~ 261 (345)
||+-+ |+. ...+.++.+.. .++|+ .++.++.+..
T Consensus 64 Vilav------P~~-~~~~vl~~l~~~~l~~~-~ivtDv~SvK 98 (359)
T PRK06545 64 IVLAV------PVD-ATAALLAELADLELKPG-VIVTDVGSVK 98 (359)
T ss_pred EEEeC------CHH-HHHHHHHHHhhcCCCCC-cEEEeCcccc
Confidence 99844 322 35678888887 47776 5555665444
No 285
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=92.81 E-value=0.32 Score=45.71 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=57.0
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEE
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIV 221 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii 221 (345)
.-|.++|||-+-++.. . --.|+..|+- ..+=+|+..|.++ +.-.+++.|+++
T Consensus 182 ~vIaD~GCGEakiA~~--~---~~kV~SfDL~----------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS--E---RHKVHSFDLV----------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred eEEEecccchhhhhhc--c---ccceeeeeee----------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 4578899999888751 1 2356666651 1223467789888 455789999998
Q ss_pred EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 222 VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 222 ~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
..+.--++ .-.+|+.++.+.|++||.+-+-=
T Consensus 234 ~CLSLMgt-----n~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 234 FCLSLMGT-----NLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred eeHhhhcc-----cHHHHHHHHHHHhccCceEEEEe
Confidence 76533221 22579999999999999986643
No 286
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.13 Score=45.11 Aligned_cols=106 Identities=17% Similarity=0.068 Sum_probs=64.7
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE---EcccccccccCCC
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH---IGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~---~gDa~~~l~~~~~ 215 (345)
..++||++|+| +|-.+..++.+-|...|..-|=+++-++-.++--..... ....++.+. .--++. .....
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~----s~~tsc~vlrw~~~~aqs--q~eq~ 102 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA----SSLTSCCVLRWLIWGAQS--QQEQH 102 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc----cccceehhhHHHHhhhHH--HHhhC
Confidence 45789999999 444444555566789999999999999877764432210 111222221 111111 12356
Q ss_pred cccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 216 RYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 216 ~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+||+|++ |. .-..-+.....+.++.+|+|.|..++-
T Consensus 103 tFDiIlaADC-----lFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 103 TFDIILAADC-----LFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred cccEEEeccc-----hhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 8999997 32 101113456788899999999995543
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.77 E-value=0.55 Score=46.26 Aligned_cols=107 Identities=11% Similarity=0.090 Sum_probs=65.6
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc-ccccccc--CC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD-VFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD-a~~~l~~--~~ 214 (345)
.+..+||++|+|+ |..+..+++..+..++.+++.+++..+.++++++.. -+.....| ..+-+.. .+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~----------vi~~~~~~~~~~~l~~~~~~ 252 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE----------TINFEEVDDVVEALRELTGG 252 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE----------EEcCCcchHHHHHHHHHcCC
Confidence 3567899999876 777778887765457999999999999999975421 11111111 1121211 23
Q ss_pred CcccEEEEcCCCCCCC------------CCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 215 GRYAGIVVDLFSEGKV------------LPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~------------p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+.+|+|+- ...+... -++-.+...++.+.+.|+++|.++.-
T Consensus 253 ~~~D~vld-~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 253 RGPDVCID-AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCEEEE-CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 46998874 3221100 00011245678888999999998643
No 288
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.76 E-value=0.74 Score=43.87 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.++||++|+| -|.++.++++..+...|.++|.+++-.+.|+.+.-. ++. .+ ....+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i---------~~~-----~~-------~~~g~D 202 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL---------DPE-----KD-------PRRDYR 202 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc---------Chh-----hc-------cCCCCC
Confidence 45789999865 566666777766555688889999888777653211 110 00 134689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|| |.... ...++.+.+.|+++|.+++
T Consensus 203 vvi-d~~G~---------~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 203 AIY-DASGD---------PSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EEE-ECCCC---------HHHHHHHHHhhhcCcEEEE
Confidence 887 43221 2356778889999999874
No 289
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.70 E-value=0.72 Score=47.61 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=60.9
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCC-----CCCCCCCcEEEEEccccc----c
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLE-----KPTATGGVLQVHIGDVFS----P 209 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-----~~~~~~~rv~v~~gDa~~----~ 209 (345)
++.+|+++|+| .|..+..+++.. +..|+++|.+++..+.+++ ++..... .....+...+..-.|..+ .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~-lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQS-MGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 57899999998 445555555554 4679999999999999887 4422100 000000111111111110 0
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+.+.-+.+|+||.-+--++...+.+.+.+. .+.+|||++++
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~em----v~~MKpGsvIV 281 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEM----VDSMKAGSVIV 281 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHH----HhhCCCCCEEE
Confidence 111236799998755333333345776665 45677887754
No 290
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.52 E-value=0.92 Score=45.59 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=60.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE----EcccccccccCCC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH----IGDVFSPSEDASG 215 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~----~gDa~~~l~~~~~ 215 (345)
++|.+||+| |+.++..|.+. +.+|+++|+|++.++..++- ..+. .++.+.-. ...++.......+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g-~~~~------~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG-EIHI------VEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC-CCCc------CCCCHHHHHHHHhhcCceeeecccc
Confidence 579999999 66777777654 57899999999999864321 1111 01111100 0001100011224
Q ss_pred cccEEEEcCCCCCC--CCCCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 216 RYAGIVVDLFSEGK--VLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~--~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-|+||+.+..+.. -.+.+ .-.+..+.+.+.|++|-+ +++..+.+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~i-VI~~STv~p 123 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDL-VILESTSPV 123 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCE-EEEeCCCCC
Confidence 68999987766421 11122 334456778888877555 455555443
No 291
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.47 E-value=0.24 Score=43.48 Aligned_cols=116 Identities=14% Similarity=0.117 Sum_probs=71.6
Q ss_pred EEEeecccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc---CCCcccE
Q 038076 145 AIYGLGGGTAAHLMLDLWP-SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED---ASGRYAG 219 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~---~~~~yD~ 219 (345)
|.+|=|.-+.+..|.+.++ ..+|++--.|.+ -++.++|-.... +-......+++++++ ||.+.-+. ...+||.
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~-~~l~~kY~~~~~-nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDr 78 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSE-EELLQKYPDAEE-NLEELRELGVTVLHGVDATKLHKHFRLKNQRFDR 78 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCch-HHHHHhcccHHH-HHHHHhhcCCccccCCCCCcccccccccCCcCCE
Confidence 6789999999999998876 555555544444 222333321000 000112455666665 77764332 3588999
Q ss_pred EEEcCCCCCC--------C-CCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGK--------V-LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~--------~-p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+-..+..+. + ...-.-..||+.+++.|+++|.+.+.+-...+
T Consensus 79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 9986655431 0 01123367999999999999999888776654
No 292
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.44 E-value=1.5 Score=35.08 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=57.8
Q ss_pred EEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCccc
Q 038076 144 IAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRYA 218 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~yD 218 (345)
|+++|+| .+++.+.+.. .+.+++++|.|++.++.+++.. +.++.||+.+. +++ .-++.|
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------------~~~i~gd~~~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------------VEVIYGDATDPEVLERAGIEKAD 64 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------------SEEEES-TTSHHHHHHTTGGCES
T ss_pred eEEEcCC--HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------------cccccccchhhhHHhhcCccccC
Confidence 4667765 4444444321 3468999999999999888743 56899999874 332 347899
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
.|++...+. ...-......+.+.|+..+++-+..
T Consensus 65 ~vv~~~~~d-------~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 65 AVVILTDDD-------EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp EEEEESSSH-------HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred EEEEccCCH-------HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 998854331 1111233445667888887766653
No 293
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.42 E-value=0.52 Score=44.48 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=64.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCCC-----CCCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPTA-----TGGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~~-----~~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..+++. +.+|+++|++++.++.+++... +.+...... .-.++++. .|. +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~-~- 78 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL-D- 78 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-H-
Confidence 479999999 77787777654 5689999999999975543211 000000000 00133322 221 1
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.-+..|+||.-+ |+.+ ...++++.+.+.++|+.+++.|..+..
T Consensus 79 ---~~~~aDlVi~av------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~ 122 (282)
T PRK05808 79 ---DLKDADLVIEAA------TENMDLKKKIFAQLDEIAKPEAILATNTSSLS 122 (282)
T ss_pred ---HhccCCeeeecc------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 125579998743 3322 346899999999999999877776644
No 294
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=92.01 E-value=0.89 Score=43.95 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=56.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+..+||++|+| .|.++..+++. ....+|+++|.+++-.+.+++ ++.. ....+ . . ....+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~-------------~~~~~---~-~-~~~g~ 223 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET-------------YLIDD---I-P-EDLAV 223 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce-------------eehhh---h-h-hccCC
Confidence 45789999975 34444455554 556789999999998888876 3311 01111 1 1 11248
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+|| |...+. .+...++...+.|+++|.+++
T Consensus 224 d~vi-D~~G~~------~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 224 DHAF-ECVGGR------GSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred cEEE-ECCCCC------ccHHHHHHHHHhCcCCcEEEE
Confidence 9887 443321 124568888899999999874
No 295
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.85 E-value=0.85 Score=42.62 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=68.2
Q ss_pred EeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCcccEEEEc
Q 038076 147 YGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGRYAGIVVD 223 (345)
Q Consensus 147 IG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~yD~Ii~D 223 (345)
.=.|+=.++..+++ +.-+....|+.|.-.+.-+++|.- +.++++++.||.+-+.. +.++=-+|++|
T Consensus 64 ~YPGSP~ia~~llR--~qDrl~l~ELHp~d~~~L~~~~~~---------~~~v~v~~~DG~~~l~allPP~~rRglVLID 132 (245)
T PF04378_consen 64 FYPGSPAIAARLLR--EQDRLVLFELHPQDFEALKKNFRR---------DRRVRVHHRDGYEGLKALLPPPERRGLVLID 132 (245)
T ss_dssp EEE-HHHHHHHHS---TTSEEEEE--SHHHHHHHTTS--T---------TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-
T ss_pred cCCCCHHHHHHhCC--ccceEEEEecCchHHHHHHHHhcc---------CCccEEEeCchhhhhhhhCCCCCCCeEEEEC
Confidence 33455555555554 678999999999999998888752 57999999999997654 45678899998
Q ss_pred CCCCCCCCCCcchHHHHHHHHhcc--CCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEE
Q 038076 224 LFSEGKVLPQLEEVATWLKLKDRL--MPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVS 298 (345)
Q Consensus 224 ~f~~~~~p~~l~t~ef~~~~~~~L--~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~ 298 (345)
..-. .... + ....+.+.+.+ =+.|+++++....+. ...+.+.+.|++.-...+.
T Consensus 133 PpYE--~~~d-y-~~v~~~l~~a~kR~~~G~~~iWYPi~~~-----------------~~~~~~~~~l~~~~~~~~l 188 (245)
T PF04378_consen 133 PPYE--QKDD-Y-QRVVDALAKALKRWPTGVYAIWYPIKDR-----------------ERVDRFLRALKALGIKKVL 188 (245)
T ss_dssp ------STTH-H-HHHHHHHHHHHHH-TTSEEEEEEEESSH-----------------HHHHHHHHHHHHH-SSE-E
T ss_pred CCCC--CchH-H-HHHHHHHHHHHHhcCCcEEEEEeecccH-----------------HHHHHHHHHHHhcCCCCeE
Confidence 5221 1111 1 12223333333 368999999887654 3467788888876432443
No 296
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.85 E-value=3.4 Score=38.69 Aligned_cols=125 Identities=18% Similarity=0.079 Sum_probs=87.9
Q ss_pred EEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCcccEEE
Q 038076 145 AIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGRYAGIV 221 (345)
Q Consensus 145 LiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~yD~Ii 221 (345)
|-.=+|+=-+++.+++ ++-++...|+.|.=..+-++.|.- +.|+++..+|+..-+.. +.++=-+|+
T Consensus 93 l~~YpGSP~lA~~llR--~qDRl~l~ELHp~D~~~L~~~f~~---------d~~vrv~~~DG~~~l~a~LPP~erRglVL 161 (279)
T COG2961 93 LRYYPGSPLLARQLLR--EQDRLVLTELHPSDAPLLRNNFAG---------DRRVRVLRGDGFLALKAHLPPKERRGLVL 161 (279)
T ss_pred cccCCCCHHHHHHHcc--hhceeeeeecCccHHHHHHHHhCC---------CcceEEEecCcHHHHhhhCCCCCcceEEE
Confidence 5556677778888775 578999999999999999999962 68999999999987754 456788999
Q ss_pred EcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCCEEEE
Q 038076 222 VDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGKVSWK 300 (345)
Q Consensus 222 ~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~v~~~ 300 (345)
+|..-.. ..+. -..+.+++..++- ++|+++++....+. ...+.+.+.|++.=...+...
T Consensus 162 IDPPfE~--~~eY~rvv~~l~~~~kRf-~~g~yaiWYPik~r-----------------~~~~~f~~~L~~~~i~kiL~i 221 (279)
T COG2961 162 IDPPFEL--KDEYQRVVEALAEAYKRF-ATGTYAIWYPIKDR-----------------RQIRRFLRALEALGIRKILQI 221 (279)
T ss_pred eCCCccc--ccHHHHHHHHHHHHHHhh-cCceEEEEEeecch-----------------HHHHHHHHHHhhcCccceeee
Confidence 9853321 1111 1223344443332 58999999887665 567888888887744344433
No 297
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.80 E-value=0.89 Score=41.71 Aligned_cols=127 Identities=17% Similarity=0.061 Sum_probs=72.4
Q ss_pred HHHHHhhccccCCCCCEEEEeecccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhcCCCCCCC--------------
Q 038076 128 YWDEFVSLPAIVPNGPIAIYGLGGGTAAHLMLDLWPS--LKLEGWEIDEILIDKVRDYFGLSDLEK-------------- 191 (345)
Q Consensus 128 Y~~~~~~l~~~~~p~~VLiIG~G~G~~~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~-------------- 191 (345)
|.+.|..++. ..|-++-+=.||+|.+.-.+.-.++. ..|.+-|||++++++|++++.+-..+.
T Consensus 40 ~qR~l~~l~~-~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~ 118 (246)
T PF11599_consen 40 FQRALHYLEG-KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQ 118 (246)
T ss_dssp HHHHHCTSSS--S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC-CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHH
Confidence 4444444433 35667888899999887655433333 799999999999999999987642110
Q ss_pred --C-------------------CCCCCcEEEEEcccccccc----cCCCcccEEEEcCCCCCCCC-----CCcchHHHHH
Q 038076 192 --P-------------------TATGGVLQVHIGDVFSPSE----DASGRYAGIVVDLFSEGKVL-----PQLEEVATWL 241 (345)
Q Consensus 192 --~-------------------~~~~~rv~v~~gDa~~~l~----~~~~~yD~Ii~D~f~~~~~p-----~~l~t~ef~~ 241 (345)
. .....-..+...|..+.-. ......|+|+-|++-+.-.- ..--...++.
T Consensus 119 ~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~ 198 (246)
T PF11599_consen 119 YGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLN 198 (246)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHH
Confidence 0 1123336788888777421 13455799999997653211 1123467899
Q ss_pred HHHhccCCCcEEEE
Q 038076 242 KLKDRLMPNGRFMV 255 (345)
Q Consensus 242 ~~~~~L~pgGvlvv 255 (345)
.+...|.+++++++
T Consensus 199 ~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 199 SLAPVLPERSVVAV 212 (246)
T ss_dssp HHHCCS-TT-EEEE
T ss_pred HHHhhCCCCcEEEE
Confidence 99999977788877
No 298
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.76 E-value=0.17 Score=44.13 Aligned_cols=113 Identities=13% Similarity=-0.013 Sum_probs=60.0
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-----
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED----- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~----- 212 (345)
.+|.+|+++|.| .|.-+..+++.. +.++++.|..++..+..+..+...-.........+-. -|-..|-+.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~ 93 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKD---FDKADYYEHPESYE 93 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB----CCHHHCHHHCCHHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCHHHHHhhhcccCceEEEcccccccccc---cchhhhhHHHHHhH
Confidence 468999999988 566666666665 5899999999998887776553110000000000000 111111111
Q ss_pred -----CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 213 -----ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 213 -----~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.-..+|+||+.+--++.-.+.+.|.+.++.++ .|.+++.+...
T Consensus 94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~-----~gsvIvDis~D 141 (168)
T PF01262_consen 94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMK-----PGSVIVDISCD 141 (168)
T ss_dssp HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSS-----TTEEEEETTGG
T ss_pred HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccC-----CCceEEEEEec
Confidence 12578999975544444457788888766544 55556666543
No 299
>PRK13699 putative methylase; Provisional
Probab=91.59 E-value=0.23 Score=45.83 Aligned_cols=60 Identities=8% Similarity=-0.052 Sum_probs=42.3
Q ss_pred EEEEEccccccccc-CCCcccEEEEcCCCCCC--------CCCC---cchHHHHHHHHhccCCCcEEEEEec
Q 038076 199 LQVHIGDVFSPSED-ASGRYAGIVVDLFSEGK--------VLPQ---LEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 199 v~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~--------~p~~---l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
.++++||+.+.++. ++++.|+||.|.+-... .... -+..+++.++++.|+|||.+++.+.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 36889999998866 57899999999633210 0000 1234678899999999999886543
No 300
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.29 E-value=0.13 Score=45.94 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=56.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-CCCCCC--C---CCCCCCcEEEEEcccccccccC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-GLSDLE--K---PTATGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-~~~~~~--~---~~~~~~rv~v~~gDa~~~l~~~ 213 (345)
++|.++|+| |..++..+.+ .+.+|+++|+|++.++..++-- .+.+.. . ......|+++. .|... .
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~----a 73 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE----A 73 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH----H
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh----h
Confidence 368999999 4455556555 3689999999999999866522 111100 0 00012333322 22222 1
Q ss_pred CCcccEEEEcCCCCCC---CCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 214 SGRYAGIVVDLFSEGK---VLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~---~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
-+..|++|+.+..+.. .++.-+-.+..+.+.+.|+++-++++-...+.
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvpp 124 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPP 124 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSST
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEE
Confidence 2568999987655421 22223445678888888999666554433333
No 301
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.26 E-value=0.11 Score=52.79 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=80.6
Q ss_pred eEEEEeeCCCCcEEEEEeCCeEEEEEcCcC-ce---EEEEecCCCcccchHHHHHh-hcccc---CCCCCEEEEeecccH
Q 038076 82 QVVTAVRSKYNDIVIVDTPKSRMLLLDSTY-NV---HSIINKGIHKWTGSYWDEFV-SLPAI---VPNGPIAIYGLGGGT 153 (345)
Q Consensus 82 ~ll~~~~s~yg~I~V~e~~~~r~L~ld~~~-~~---~~~~~~~p~~l~~~Y~~~~~-~l~~~---~~p~~VLiIG~G~G~ 153 (345)
..++...-+|..+.... +.++++...+.. .. .+++.. -...|.+.+. ++|.. ..-+.+|++|||.|+
T Consensus 56 d~iW~~Nvph~~L~~~K-~~qnWv~~~gd~~~FPgggt~F~~----Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aS 130 (506)
T PF03141_consen 56 DYIWYANVPHTKLAEEK-ADQNWVRVEGDKFRFPGGGTMFPH----GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVAS 130 (506)
T ss_pred ceeeecccCchHHhhhc-ccccceeecCCEEEeCCCCccccC----CHHHHHHHHHHHhhccccCCceEEEEeccceeeh
Confidence 36677777777755433 334444443321 00 112211 2456887665 44442 233679999999999
Q ss_pred HHHHHHHhCCCCEEEE---EECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCC
Q 038076 154 AAHLMLDLWPSLKLEG---WEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKV 230 (345)
Q Consensus 154 ~~~~l~~~~p~~~v~~---VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~ 230 (345)
++.+|+++ ++.+.. -|-.+.-++.|-+. |++.. +.+ . +.+=|......||+|=|--.. +
T Consensus 131 F~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR-Gvpa~---------~~~-~--~s~rLPfp~~~fDmvHcsrc~---i 192 (506)
T PF03141_consen 131 FGAYLLER--NVTTMSFAPNDEHEAQVQFALER-GVPAM---------IGV-L--GSQRLPFPSNAFDMVHCSRCL---I 192 (506)
T ss_pred hHHHHhhC--CceEEEcccccCCchhhhhhhhc-Ccchh---------hhh-h--ccccccCCccchhhhhccccc---c
Confidence 99999875 322222 24444555555443 12210 111 1 112234467889998552211 1
Q ss_pred CCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 231 LPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 231 p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+.+-..--++-++-|.|+|||.++..-
T Consensus 193 ~W~~~~g~~l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 193 PWHPNDGFLLFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred cchhcccceeehhhhhhccCceEEecC
Confidence 111111225667889999999987543
No 302
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.24 E-value=2.4 Score=39.62 Aligned_cols=119 Identities=16% Similarity=0.231 Sum_probs=69.8
Q ss_pred HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEcCCCCCCCCCC
Q 038076 154 AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQ 233 (345)
Q Consensus 154 ~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~ 233 (345)
+++.|.+..+..+|.++|.++...+.|++. +... -...+ .+.+ +.+|+||+-+ |.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~------------~~~~~-~~~~----~~~Dlvvlav------P~- 55 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIID------------EASTD-IEAV----EDADLVVLAV------PV- 55 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSS------------EEESH-HHHG----GCCSEEEE-S-------H-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCee------------eccCC-HhHh----cCCCEEEEcC------CH-
Confidence 467788877789999999999999998764 3221 11122 2222 4569999843 22
Q ss_pred cchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHHHCCCC---EEEEEecCC-----
Q 038076 234 LEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSEAFPGK---VSWKRMPER----- 305 (345)
Q Consensus 234 l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~~F~~~---v~~~~~~~~----- 305 (345)
-...++++++...+++|+++ +.+.+... .+++.+++..+.. +...++-+.
T Consensus 56 ~~~~~~l~~~~~~~~~~~iv-~Dv~SvK~---------------------~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~ 113 (258)
T PF02153_consen 56 SAIEDVLEEIAPYLKPGAIV-TDVGSVKA---------------------PIVEAMERLLPEGVRFVGGHPMAGPEKSGP 113 (258)
T ss_dssp HHHHHHHHHHHCGS-TTSEE-EE--S-CH---------------------HHHHHHHHHHTSSGEEEEEEESCSTSSSSG
T ss_pred HHHHHHHHHhhhhcCCCcEE-EEeCCCCH---------------------HHHHHHHHhcCcccceeecCCCCCCccccc
Confidence 24678899999988887655 45554332 4555556655523 333445443
Q ss_pred --------CCceEEEEeCCCCC
Q 038076 306 --------NGENFLALTGLLPD 319 (345)
Q Consensus 306 --------~~~n~v~~a~~~p~ 319 (345)
.+.++++......+
T Consensus 114 ~~a~~~lf~g~~~il~p~~~~~ 135 (258)
T PF02153_consen 114 EAADADLFEGRNWILCPGEDTD 135 (258)
T ss_dssp GG-TTTTTTTSEEEEEECTTS-
T ss_pred hhhcccccCCCeEEEeCCCCCh
Confidence 46777777665544
No 303
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.14 E-value=1.1 Score=41.41 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCCCEEEEeecccHHHHHHHHh-C---C-C-C---EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL-W---P-S-L---KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS 210 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~-~---p-~-~---~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l 210 (345)
.-+||++|....|+....+.+. + + . . .|.+||+.|. .+ -+.+.-+.+|..+--
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aP-------I~GV~qlq~DIT~~s 102 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------AP-------IEGVIQLQGDITSAS 102 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Cc-------cCceEEeecccCCHh
Confidence 3579999999999988877764 2 2 1 2 3999999653 22 356788888876531
Q ss_pred c------c-CCCcccEEEEcCCCC-CCC--CCCcchH----HHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCc
Q 038076 211 E------D-ASGRYAGIVVDLFSE-GKV--LPQLEEV----ATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSM 276 (345)
Q Consensus 211 ~------~-~~~~yD~Ii~D~f~~-~~~--p~~l~t~----ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~ 276 (345)
. . .+++.|+|++|.--. .++ ..+.... ..+......|+|||.++.-......
T Consensus 103 tae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~-------------- 168 (294)
T KOG1099|consen 103 TAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD-------------- 168 (294)
T ss_pred HHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc--------------
Confidence 1 1 468999999986332 111 1222222 2344556679999999877664443
Q ss_pred cchHHHHHHHHHHHHHCCCCEEEEE
Q 038076 277 NDVWMHNSAIRALSEAFPGKVSWKR 301 (345)
Q Consensus 277 d~~~~~~~~~~~l~~~F~~~v~~~~ 301 (345)
..-++..|+..|. .|.+++
T Consensus 169 -----tslLysql~~ff~-kv~~~K 187 (294)
T KOG1099|consen 169 -----TSLLYSQLRKFFK-KVTCAK 187 (294)
T ss_pred -----hHHHHHHHHHHhh-ceeeec
Confidence 2346667888898 565544
No 304
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.11 E-value=2.2 Score=39.08 Aligned_cols=105 Identities=20% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCCCEEEEeeccc----HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccc-ccccCC
Q 038076 140 PNGPIAIYGLGGG----TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFS-PSEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G----~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~-~l~~~~ 214 (345)
+.+-+++..+++| +++.....+..+.++.+|-.|++-....++..+-... .+.++++++|..+ .+. .-
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~------~~~vEfvvg~~~e~~~~-~~ 113 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL------SDVVEFVVGEAPEEVMP-GL 113 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc------cccceEEecCCHHHHHh-hc
Confidence 4566888876654 4445555566788999999999888777777743221 2456888998654 443 34
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE--EecC
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV--NCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv--n~~~ 259 (345)
+..|.+++|.-..+ +..++|+.++ ++|.|.+++ |...
T Consensus 114 ~~iDF~vVDc~~~d------~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 114 KGIDFVVVDCKRED------FAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred cCCCEEEEeCCchh------HHHHHHHHhc--cCCCceEEEEecccc
Confidence 68999999975422 2235555543 778887665 5443
No 305
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=91.09 E-value=0.063 Score=48.81 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=65.5
Q ss_pred ccc-CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 136 PAI-VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 136 ~~~-~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
|.. .+|.++|+||.|.|-++..+.-.+ .+|.+-|++..|...-++.- .+++ -..+|++ ++
T Consensus 107 p~w~~~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~kk~--------------ynVl--~~~ew~~-t~ 167 (288)
T KOG3987|consen 107 PAWGQEPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKKKN--------------YNVL--TEIEWLQ-TD 167 (288)
T ss_pred CccCCCCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhhcC--------------Ccee--eehhhhh-cC
Confidence 544 468899999999999988766433 56889999999988655421 1222 2234543 57
Q ss_pred CcccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCC-CcEEEEEe
Q 038076 215 GRYAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMP-NGRFMVNC 257 (345)
Q Consensus 215 ~~yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~p-gGvlvvn~ 257 (345)
-+||+|.| .+-+. ....-..++.+...|.| +|.+++.+
T Consensus 168 ~k~dli~clNlLDR-----c~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDR-----CFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHh-----hcChHHHHHHHHHHhccCCCcEEEEE
Confidence 78999975 11111 11223578899999999 88877643
No 306
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.98 E-value=1.8 Score=39.18 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~ 216 (345)
.+..+||+.|+|+ |.....+.+.. +.+|.+++.+++-.+.+++.. ... -+.....+...-+ ....+.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g-~~~---------~~~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELG-ADH---------VIDYKEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC-Cce---------eccCCcCCHHHHHHHhcCCC
Confidence 4568999999885 54555555544 489999999999888887643 111 0000001111100 123567
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
+|+|+.-... ...+..+.+.|+++|.++..-
T Consensus 202 ~d~vi~~~~~----------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 202 ADVVIDAVGG----------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCEEEECCCC----------HHHHHHHHHhcccCCEEEEEc
Confidence 9999853211 145677788999999987543
No 307
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.97 E-value=1.3 Score=36.11 Aligned_cols=86 Identities=14% Similarity=-0.000 Sum_probs=59.1
Q ss_pred cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc---cccccc-C-CCcccEEEEcC
Q 038076 150 GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV---FSPSED-A-SGRYAGIVVDL 224 (345)
Q Consensus 150 G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa---~~~l~~-~-~~~yD~Ii~D~ 224 (345)
|-|..+..+++... .+|.++|.++.-.+.++++. .. .++..+- .+.+++ . +..+|+||--.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G-a~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG-AD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-ES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc-cc------------ccccccccccccccccccccccceEEEEec
Confidence 45778888888876 99999999999999999854 21 1222222 223322 2 35899998532
Q ss_pred CCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 225 FSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 225 f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
- +.+.++.+.+.|+++|.+++--..
T Consensus 67 g----------~~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 67 G----------SGDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp S----------SHHHHHHHHHHEEEEEEEEEESST
T ss_pred C----------cHHHHHHHHHHhccCCEEEEEEcc
Confidence 1 246788999999999998754433
No 308
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.81 E-value=1.5 Score=41.62 Aligned_cols=104 Identities=15% Similarity=0.203 Sum_probs=61.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCC-CCCCC-------CCcEEEEEccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLE-KPTAT-------GGVLQVHIGDV 206 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~-~~~~~-------~~rv~v~~gDa 206 (345)
++|.+||+| |+.++..+++. +.+|+++|.+++.++.+++... +.... +.... ..+++.. .|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~ 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH
Confidence 579999999 66666666653 5689999999999987654321 10000 00000 0122221 121
Q ss_pred ccccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 207 FSPSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 207 ~~~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+ .-+..|+||.-+ |+.+ ...++++++.+.++|+-+++.|..+
T Consensus 81 -~----~~~~aDlVieav------~e~~~~k~~~~~~l~~~~~~~~il~S~tsg 123 (291)
T PRK06035 81 -E----SLSDADFIVEAV------PEKLDLKRKVFAELERNVSPETIIASNTSG 123 (291)
T ss_pred -H----HhCCCCEEEEcC------cCcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 1 124579998744 3332 3577889999889998888755443
No 309
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.53 E-value=1.4 Score=42.49 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=57.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~ 216 (345)
.+..+||+.|+| .|..+..+++......|.+++.+++-.+.+++ ++... -+.....+.....+. ....
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAMQ---------TFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCce---------EecCcccCHHHHHHHhcCCC
Confidence 356799999864 33444455555543358999999999998876 44221 011111111111111 2346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|.+++|.... ...+....+.|+++|.+++
T Consensus 229 ~d~~v~d~~G~---------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 229 FDQLILETAGV---------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CCeEEEECCCC---------HHHHHHHHHHhhcCCEEEE
Confidence 88666675432 2467778899999999764
No 310
>PHA01634 hypothetical protein
Probab=90.44 E-value=0.61 Score=39.34 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=58.8
Q ss_pred cchHHHHHhh-cccc-CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE
Q 038076 125 TGSYWDEFVS-LPAI-VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH 202 (345)
Q Consensus 125 ~~~Y~~~~~~-l~~~-~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~ 202 (345)
.-.|++.+.. ...+ ...++|++||++-|..+.+++.. ...+|.++|.+|...+..++........ |..+-.
T Consensus 11 ~c~ywrey~~~Y~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~-----DK~v~~- 83 (156)
T PHA01634 11 ECDYWREYPHAYGMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNIC-----DKAVMK- 83 (156)
T ss_pred cchHHHHHHHHhhheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheee-----eceeec-
Confidence 4456654421 1112 46799999999999999988753 5689999999999999998865432110 111100
Q ss_pred EcccccccccCCCcccEEEEcCCC
Q 038076 203 IGDVFSPSEDASGRYAGIVVDLFS 226 (345)
Q Consensus 203 ~gDa~~~l~~~~~~yD~Ii~D~f~ 226 (345)
+ +| ...-+.+|+..+|.-.
T Consensus 84 -~---eW-~~~Y~~~Di~~iDCeG 102 (156)
T PHA01634 84 -G---EW-NGEYEDVDIFVMDCEG 102 (156)
T ss_pred -c---cc-cccCCCcceEEEEccc
Confidence 0 22 2245789999998744
No 311
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.42 E-value=1.4 Score=42.18 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----cCCCCCCCCC-CCCCcEEEEEcccccccccCC
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY----FGLSDLEKPT-ATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~----f~~~~~~~~~-~~~~rv~v~~gDa~~~l~~~~ 214 (345)
++|.+||+| |+.++..+.+ .+.+|+++|.+++.++.+++. .+........ ....+++. ..|..+ .-
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~--~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~----~~ 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFAR--KGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAA----AV 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHH----Hh
Confidence 679999999 6677777665 357899999999998877653 2211000000 00011221 122211 12
Q ss_pred CcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecC
Q 038076 215 GRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+..|+||.-+ |+.. ...+++..+...++++-+++.|..+
T Consensus 78 ~~aDlVi~av------~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 78 SGADLVIEAV------PEKLELKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred ccCCEEEEec------cCcHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 4679999744 3332 3457788888777776666656554
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.38 E-value=0.97 Score=44.16 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~ 216 (345)
.+..+||++|+| .|.++.++++.....+|.+++.+++-.+.++++ +... -+.....|..+.+.. .+..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL-GATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc-CCce---------EeCCCchhHHHHHHHHhCCC
Confidence 345789998865 344555566655433799999999999999763 4321 011111122222221 2336
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+- .... .+.++.+.+.|+++|.++.
T Consensus 260 ~d~vid-~~G~---------~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 260 VDYAFE-MAGS---------VPALETAYEITRRGGTTVT 288 (371)
T ss_pred CCEEEE-CCCC---------hHHHHHHHHHHhcCCEEEE
Confidence 898883 2211 2457777889999999874
No 313
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=90.27 E-value=1.7 Score=40.14 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=58.0
Q ss_pred HHHHHhhcccc--CCCCCEEEEeecccHHHH--HHHHhCCCCEEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE
Q 038076 128 YWDEFVSLPAI--VPNGPIAIYGLGGGTAAH--LMLDLWPSLKLEGW--EIDEILIDKVRDYFGLSDLEKPTATGGVLQV 201 (345)
Q Consensus 128 Y~~~~~~l~~~--~~p~~VLiIG~G~G~~~~--~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v 201 (345)
|-+.+-.+|.. .+.++||++|+|.-..-+ .|++ -+.+|++| |++|++.++++ .+++++
T Consensus 10 ~~~~~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~--~gA~VtVVap~i~~el~~l~~--------------~~~i~~ 73 (223)
T PRK05562 10 YNEENKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLK--KGCYVYILSKKFSKEFLDLKK--------------YGNLKL 73 (223)
T ss_pred hhccCCEeeeEEECCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCCCHHHHHHHh--------------CCCEEE
Confidence 33334445533 357899999988655443 3333 24667766 88899887653 245777
Q ss_pred EEcccccccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 202 HIGDVFSPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 202 ~~gDa~~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+..+.. ...-..+++||.-..+ .+.=+.+.+.-+..|+++.++..
T Consensus 74 ~~r~~~---~~dl~g~~LViaATdD----------~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 74 IKGNYD---KEFIKDKHLIVIATDD----------EKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EeCCCC---hHHhCCCcEEEECCCC----------HHHHHHHHHHHHHcCCeEEEcCC
Confidence 764432 2223568888874322 23333444444455777654443
No 314
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.26 E-value=2.1 Score=45.37 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=50.2
Q ss_pred CCCEEEEeec-ccH-HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCC
Q 038076 141 NGPIAIYGLG-GGT-AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASG 215 (345)
Q Consensus 141 p~~VLiIG~G-~G~-~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~ 215 (345)
..+|+++|+| .|. +++.+.+ .+.+++++|.||+.++.++++ + .+++.||+.+- ++. .-+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-g-------------~~v~~GDat~~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF-G-------------MKVFYGDATRMDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc-C-------------CeEEEEeCCCHHHHHhcCCC
Confidence 3689999988 343 4445544 357899999999999998773 2 46899999874 332 346
Q ss_pred cccEEEEcCCC
Q 038076 216 RYAGIVVDLFS 226 (345)
Q Consensus 216 ~yD~Ii~D~f~ 226 (345)
+.|++++-..+
T Consensus 464 ~A~~vvv~~~d 474 (621)
T PRK03562 464 KAEVLINAIDD 474 (621)
T ss_pred cCCEEEEEeCC
Confidence 89998875533
No 315
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.25 E-value=2.1 Score=42.43 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=54.6
Q ss_pred CCCEEEEee-c--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 141 NGPIAIYGL-G--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 141 p~~VLiIG~-G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..+|.+||+ | ||++++.+.+.. +.+|+++|.+ .+ . ..|..+ .-+..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~-------------d~--------~-----~~~~~~----~v~~a 52 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA-------------DP--------G-----SLDPAT----LLQRA 52 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC-------------cc--------c-----cCCHHH----HhcCC
Confidence 468999999 8 899999998763 7889999974 00 0 001111 23568
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhc---cCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDR---LMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~---L~pgGvlvvn~~~~~~ 262 (345)
|+||+-.+- -.+.+.++++... |+| |.+++.+.+...
T Consensus 53 DlVilavPv-------~~~~~~l~~l~~~~~~l~~-~~iVtDVgSvK~ 92 (370)
T PRK08818 53 DVLIFSAPI-------RHTAALIEEYVALAGGRAA-GQLWLDVTSIKQ 92 (370)
T ss_pred CEEEEeCCH-------HHHHHHHHHHhhhhcCCCC-CeEEEECCCCcH
Confidence 999984322 2567788888775 556 566667775543
No 316
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.15 E-value=2.2 Score=36.78 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=54.6
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|-+||+| |..+++.|.+ .+.+|.+.|.+++-.+...+.- . ....+..+..+ ..|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~--~g~~v~~~d~~~~~~~~~~~~g--------------~-~~~~s~~e~~~----~~dv 60 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAK--AGYEVTVYDRSPEKAEALAEAG--------------A-EVADSPAEAAE----QADV 60 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHH--TTTEEEEEESSHHHHHHHHHTT--------------E-EEESSHHHHHH----HBSE
T ss_pred CEEEEEchHHHHHHHHHHHHh--cCCeEEeeccchhhhhhhHHhh--------------h-hhhhhhhhHhh----cccc
Confidence 478899998 4556666654 3678999999998887665531 2 23345455443 3499
Q ss_pred EEEcCCCCCCCCCCcchHHHHHH--HHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLK--LKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~--~~~~L~pgGvlvvn~~~~~~ 262 (345)
|++-+.+. -...+.+.. +...|++|-++ +++.+.++
T Consensus 61 vi~~v~~~------~~v~~v~~~~~i~~~l~~g~ii-id~sT~~p 98 (163)
T PF03446_consen 61 VILCVPDD------DAVEAVLFGENILAGLRPGKII-IDMSTISP 98 (163)
T ss_dssp EEE-SSSH------HHHHHHHHCTTHGGGS-TTEEE-EE-SS--H
T ss_pred eEeecccc------hhhhhhhhhhHHhhccccceEE-EecCCcch
Confidence 99865442 133556666 77777666555 57776665
No 317
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.14 E-value=1.4 Score=42.21 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=56.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|+++|+| ||.++..|.+. +..|+.|+-.++-++.-++.-++.-.. .+....+.. ........+.||+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~----~g~~~~~~~---~~~~~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVE----QGQASLYAI---PAETADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEee----CCcceeecc---CCCCcccccccCE
Confidence 479999998 56677676653 568999998865555444422211000 011111110 0001112358999
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
||+-.=. ..+.+.++.++..+.++..++.
T Consensus 74 viv~vK~-------~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 74 LLLACKA-------YDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred EEEECCH-------HhHHHHHHHHHhhCCCCCEEEE
Confidence 9984321 2467889999999999987654
No 318
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.09 E-value=0.87 Score=41.02 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=53.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.++++||++|.= +|.....++.. ..+|+++||+|.+-.+ ++ +++++. ..+...++.|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~------lp---------~~v~Fr-----~~~~~~~G~~ 100 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGF------LP---------NNVKFR-----NLLKFIRGEV 100 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhc------CC---------CCccHh-----hhcCCCCCce
Confidence 578999999974 66666666643 6899999999986432 33 234333 3344467899
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+|+ |+..-+++ +.|++ +.++|+-.++
T Consensus 101 Dliv-DlTGlGG~-----~Pe~L----~~fnp~vfiV 127 (254)
T COG4017 101 DLIV-DLTGLGGI-----EPEFL----AKFNPKVFIV 127 (254)
T ss_pred eEEE-eccccCCC-----CHHHH----hccCCceEEE
Confidence 9987 66554443 23443 4677765554
No 319
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=89.93 E-value=0.25 Score=46.85 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=75.7
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
..-++++|||-|-... ..|...+.+.|+.-.++..|++--+ ..+..+|+... ...+..||.+
T Consensus 46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~-------------~~~~~ad~l~~-p~~~~s~d~~ 107 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGG-------------DNVCRADALKL-PFREESFDAA 107 (293)
T ss_pred cceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCC-------------ceeehhhhhcC-CCCCCccccc
Confidence 4568999999885432 2477899999999888888776321 15777888884 3467899998
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGV 263 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~ 263 (345)
+.-++-+ +.....-....++++.+.|+|||-..+.+|+...+
T Consensus 108 lsiavih-hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q~ 149 (293)
T KOG1331|consen 108 LSIAVIH-HLSTRERRERALEELLRVLRPGGNALVYVWALEQH 149 (293)
T ss_pred hhhhhhh-hhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhcc
Confidence 8643332 22223344568999999999999999999988763
No 320
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.57 E-value=1.6 Score=42.38 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+| -|..+.++++.....+|.+++.+++-.+.+++ ++... -+.....|..+.+.. ...
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGATH---------TVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCce---------EEcCCCcCHHHHHHHHhCCC
Confidence 356789999864 34455556665543469999999999999976 34221 011111222222222 234
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+ |.... .+.++...+.|+++|.+++
T Consensus 245 g~d~vi-d~~g~---------~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 245 GADVVI-DAVGR---------PETYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCEEE-ECCCC---------HHHHHHHHHHhccCCEEEE
Confidence 689887 43221 2456777788999999874
No 321
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=89.38 E-value=1 Score=43.41 Aligned_cols=110 Identities=23% Similarity=0.253 Sum_probs=65.0
Q ss_pred CCEEEEeecccHHHHHHHHhC--------------------CCCEEEEEECCH--HHHHHHHHhcCCC-CCCC-------
Q 038076 142 GPIAIYGLGGGTAAHLMLDLW--------------------PSLKLEGWEIDE--ILIDKVRDYFGLS-DLEK------- 191 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~--------------------p~~~v~~VEidp--~vi~~A~~~f~~~-~~~~------- 191 (345)
.+||+||+|+|+-...+...+ +...|+.|||-+ .|++.-.....-+ ...+
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999986555554433 125899999975 4554444444322 1100
Q ss_pred --CCCCCCcEEEEEcccccccccC------CCcccEEEE-----cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 192 --PTATGGVLQVHIGDVFSPSEDA------SGRYAGIVV-----DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 192 --~~~~~~rv~v~~gDa~~~l~~~------~~~yD~Ii~-----D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.....=++++.+.|..+.-... .+..|+|.+ .+|+.. .-.|..|+..+-+.++||-.+.|
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s----~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS----ISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC----hHHHHHHHHHHHhhcCCCcEEEE
Confidence 0112336788888887753321 124566643 122221 12477899999999999988664
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.31 E-value=2.1 Score=41.49 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEEC---CHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEI---DEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEi---dp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
+..+|+++|+| .|.++.++++.. +.+|++++. ++.-.+.+++ ++... +.....|..+ .. ...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~-~Ga~~----------v~~~~~~~~~-~~-~~~ 237 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE-LGATY----------VNSSKTPVAE-VK-LVG 237 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH-cCCEE----------ecCCccchhh-hh-hcC
Confidence 56789999976 356666677665 458999986 7888888876 34221 1000111111 11 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+||- ... ....+....+.|+++|.+++
T Consensus 238 ~~d~vid-~~g---------~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 238 EFDLIIE-ATG---------VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CCCEEEE-CcC---------CHHHHHHHHHHccCCcEEEE
Confidence 6898874 221 12367788899999998764
No 323
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.08 E-value=1.9 Score=41.44 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=53.9
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..+|++||+| |+.++..|.+. +..|+.+.-++. +..++. ++.-. ..+.+.++..-.+....+ ..+.+|
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~-g~~~~----~~~~~~~~~~~~~~~~~~-~~~~~D 74 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVREN-GLQVD----SVHGDFHLPPVQAYRSAE-DMPPCD 74 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhC-CeEEE----eCCCCeeecCceEEcchh-hcCCCC
Confidence 4689999998 66677676653 578888888762 322221 21100 001111111000111111 236799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+||+-.-.. .+.+.++.++..+++++.++
T Consensus 75 ~vilavK~~-------~~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 75 WVLVGLKTT-------ANALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred EEEEEecCC-------ChHhHHHHHhhhcCCCCEEE
Confidence 999854321 34678888999999998765
No 324
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=89.02 E-value=0.69 Score=45.73 Aligned_cols=106 Identities=11% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+...++++|||-|...+++.. +....++++++++.-+..+........ .+.+..+..+|..+-. ..+..||.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~------l~~k~~~~~~~~~~~~-fedn~fd~ 181 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAY------LDNKCNFVVADFGKMP-FEDNTFDG 181 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHH------hhhhcceehhhhhcCC-CCccccCc
Confidence 445799999999999988775 567899999999998888776553221 1344455667766532 35788998
Q ss_pred EE-EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 220 IV-VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 220 Ii-~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+- +|+-. +.| .....|+++.+.++|||++++--+
T Consensus 182 v~~ld~~~--~~~---~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 182 VRFLEVVC--HAP---DLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred EEEEeecc--cCC---cHHHHHHHHhcccCCCceEEeHHH
Confidence 84 45433 223 236789999999999999987433
No 325
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.95 E-value=1.9 Score=41.28 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=58.1
Q ss_pred CCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 142 GPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
.+||+.|+ |.|..+.++++.....+|.+++-+++-.+.+++.++... -+.....|..+.+.. .++.+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~---------vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDA---------AINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcE---------EEECCCCCHHHHHHHHCCCCce
Confidence 68999986 456666677776532379999999998888877666421 111111122222221 235799
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+ |.... ..+..+.+.|+++|.++.
T Consensus 227 ~vi-d~~g~----------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYF-DNVGG----------EISDTVISQMNENSHIIL 252 (345)
T ss_pred EEE-ECCCc----------HHHHHHHHHhccCCEEEE
Confidence 888 43221 124677789999999874
No 326
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.93 E-value=2.7 Score=43.02 Aligned_cols=107 Identities=14% Similarity=0.004 Sum_probs=57.2
Q ss_pred CCEEEEeecc--cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc--c--cccccc---
Q 038076 142 GPIAIYGLGG--GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD--V--FSPSED--- 212 (345)
Q Consensus 142 ~~VLiIG~G~--G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD--a--~~~l~~--- 212 (345)
.+|.+||+|- ..++..+.+.-.+.+|+++|+|++.++.-++-. .+ .. ++.+.-...+ + ..+-.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~-~~-~~-----e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ-LP-IY-----EPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC-Cc-cC-----CCCHHHHHHHhhcCCEEEEcCHHH
Confidence 4699999993 344444544333688999999999999866532 11 00 1111100000 1 111111
Q ss_pred CCCcccEEEEcCCCCCC--------CCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGK--------VLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~--------~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.-+.-|+||+.+..+.. .+.--+-.+..+.+.+.|+++-++++
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~ 125 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE 125 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence 12457899886654321 12222345667778888877554443
No 327
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.83 E-value=1.9 Score=41.18 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=56.0
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+..+||++|+| -|..+.++++.. +.+ |++++.+++-.+.+++ ++... -+.....| .+-+.. ..
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~-~ga~~---------~i~~~~~~-~~~~~~~~~~ 229 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA-LGADF---------VINSGQDD-VQEIRELTSG 229 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH-hCCCE---------EEcCCcch-HHHHHHHhCC
Confidence 356799999764 233444555554 455 9999999999999876 44321 01111112 111111 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+--. . ....+....+.|+++|.+++
T Consensus 230 ~~~d~vid~~-g---------~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 230 AGADVAIECS-G---------NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCCEEEECC-C---------CHHHHHHHHHHhhcCCEEEE
Confidence 4799988422 1 12345667788999999874
No 328
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.78 E-value=2.5 Score=36.58 Aligned_cols=70 Identities=14% Similarity=0.067 Sum_probs=39.7
Q ss_pred hcccc--CCCCCEEEEeeccc--HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 134 SLPAI--VPNGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 134 ~l~~~--~~p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
.+|.+ ...++|+++|+|.= ..++.|++ .+.+|++| +|+..+..++. . ++++. .+.|
T Consensus 4 ~~P~~l~l~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VI--sp~~~~~l~~l---~----------~i~~~---~~~~ 63 (157)
T PRK06719 4 MYPLMFNLHNKVVVIIGGGKIAYRKASGLKD--TGAFVTVV--SPEICKEMKEL---P----------YITWK---QKTF 63 (157)
T ss_pred ccceEEEcCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEE--cCccCHHHHhc---c----------CcEEE---eccc
Confidence 45543 46789999998832 33445554 36788888 45554433321 1 23332 2334
Q ss_pred cccCCCcccEEEEc
Q 038076 210 SEDASGRYAGIVVD 223 (345)
Q Consensus 210 l~~~~~~yD~Ii~D 223 (345)
-+..-+.+|+|+.-
T Consensus 64 ~~~dl~~a~lViaa 77 (157)
T PRK06719 64 SNDDIKDAHLIYAA 77 (157)
T ss_pred ChhcCCCceEEEEC
Confidence 33344678998874
No 329
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.71 E-value=2 Score=40.25 Aligned_cols=95 Identities=9% Similarity=0.007 Sum_probs=57.1
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+..+||++|+| -|.++..+++.....+|.++|.+++-.+.++++ +.... .++ .+..+.+.. ....
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga~~~-----i~~------~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-GATAL-----AEP------EVLAERQGGLQNGRG 187 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc-CCcEe-----cCc------hhhHHHHHHHhCCCC
Confidence 45789999865 344455566655434599999999999998884 32210 011 010111111 2346
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|+|+- ... ..+.++.+.+.|+++|.+++-
T Consensus 188 ~d~vid-~~G---------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALE-FSG---------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEE-CCC---------ChHHHHHHHHHhcCCCEEEEe
Confidence 998873 321 124677788899999998753
No 330
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.71 E-value=6.3 Score=37.52 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+.++..+.+ .+.+|++++.+++.++..++..............++++. ..|..+ ..+..|+|
T Consensus 3 kI~iiG~G~mG~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~D~v 75 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR--NGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAE----ALADADLI 75 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHH----HHhCCCEE
Confidence 69999988 5566666665 356899999999888866654211100000000012221 122221 12467999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+-+.+ ....+.++.+...++++.+++
T Consensus 76 i~~v~~-------~~~~~v~~~l~~~~~~~~~vi 102 (325)
T PRK00094 76 LVAVPS-------QALREVLKQLKPLLPPDAPIV 102 (325)
T ss_pred EEeCCH-------HHHHHHHHHHHhhcCCCCEEE
Confidence 985433 145677788888888766544
No 331
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.56 E-value=2.1 Score=40.19 Aligned_cols=89 Identities=24% Similarity=0.326 Sum_probs=55.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |++++..+.+.....+|.++|.+++-.+.+++. +... . ..+..+ + . ..|+|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~~---------~----~~~~~~-~---~-~aD~V 62 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLVD---------E----IVSFEE-L---K-KCDVI 62 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCCc---------c----cCCHHH-H---h-cCCEE
Confidence 58899998 677888877642235899999999988877542 2210 0 012111 1 2 27999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
|+-+.. . ...+.+..+.. ++++.++ +.+.+
T Consensus 63 ilavp~------~-~~~~~~~~l~~-l~~~~iv-~d~gs 92 (275)
T PRK08507 63 FLAIPV------D-AIIEILPKLLD-IKENTTI-IDLGS 92 (275)
T ss_pred EEeCcH------H-HHHHHHHHHhc-cCCCCEE-EECcc
Confidence 985422 2 34567777877 8777644 45443
No 332
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.47 E-value=4.6 Score=38.50 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=59.7
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..+++.+.+ .+.+|.+.|.+++-++..++. +... ..+..+..+ .-+.-|+|
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~--~g~~V~~~dr~~~~~~~l~~~-g~~~--------------~~s~~~~~~-~~~~~dvI 63 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAK--RGHDCVGYDHDQDAVKAMKED-RTTG--------------VANLRELSQ-RLSAPRVV 63 (298)
T ss_pred EEEEEcchHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHc-CCcc--------------cCCHHHHHh-hcCCCCEE
Confidence 58899998 4556666665 357899999999988876653 2111 012222211 12456999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+ |.. ...+.++.+...|++| .+++++.+...
T Consensus 64 i~~v------p~~-~~~~v~~~l~~~l~~g-~ivid~st~~~ 97 (298)
T TIGR00872 64 WVMV------PHG-IVDAVLEELAPTLEKG-DIVIDGGNSYY 97 (298)
T ss_pred EEEc------Cch-HHHHHHHHHHhhCCCC-CEEEECCCCCc
Confidence 8854 333 4567788888888776 56678776654
No 333
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.37 E-value=1.6 Score=42.47 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----C--CCCCCCCCCCCcEEEEEcccccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----L--SDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~--~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
.++|.+||+| |..++..++. .+.+|+.+|++|+..+.++++.. + ..... .....++++. .| ++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~--aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~-~~----l~ 78 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA--HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAP-GASPARLRFV-AT----IE 78 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCh-hhHHhhceec-CC----HH
Confidence 3689999998 5556555554 47999999999998876554321 0 00000 0001233322 12 11
Q ss_pred cCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
..-+.-|+|+-- +|+.+ ...+.|+.+-+.++|+-++..|..+.
T Consensus 79 ~av~~aDlViEa------vpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 79 ACVADADFIQES------APEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred HHhcCCCEEEEC------CcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 122567888863 34333 45678999999999999888877744
No 334
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.35 E-value=3.1 Score=43.90 Aligned_cols=96 Identities=19% Similarity=0.312 Sum_probs=62.6
Q ss_pred CCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
.+|+++|+| -| .+++.+.+ .+.+++++|.||+.++.++++ + .+++.||+.+- +++ .-++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-g-------------~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMA--NKMRITVLERDISAVNLMRKY-G-------------YKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred CCEEEecCchHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhC-C-------------CeEEEeeCCCHHHHHhcCCcc
Confidence 579999887 33 34444443 357899999999999988763 2 46899999873 332 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.|++++-..+.. .+.... ...+.+.|+..+++-..+.
T Consensus 465 A~~vv~~~~d~~------~n~~i~-~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 465 AEAIVITCNEPE------DTMKIV-ELCQQHFPHLHILARARGR 501 (601)
T ss_pred CCEEEEEeCCHH------HHHHHH-HHHHHHCCCCeEEEEeCCH
Confidence 898887543321 122222 3345578888887765543
No 335
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=88.14 E-value=0.4 Score=43.89 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=64.1
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc-cc-cCCCccc
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP-SE-DASGRYA 218 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~-l~-~~~~~yD 218 (345)
+-++|+||+=..... +. ..+-..|+.+|++|.-- .|...|..+. +. ...++||
T Consensus 52 ~lrlLEVGals~~N~--~s-~~~~fdvt~IDLns~~~----------------------~I~qqDFm~rplp~~~~e~Fd 106 (219)
T PF11968_consen 52 KLRLLEVGALSTDNA--CS-TSGWFDVTRIDLNSQHP----------------------GILQQDFMERPLPKNESEKFD 106 (219)
T ss_pred cceEEeecccCCCCc--cc-ccCceeeEEeecCCCCC----------------------CceeeccccCCCCCCccccee
Confidence 468999996533322 22 23556799999976211 1445565553 21 2468999
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcE-----EEEEecCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGR-----FMVNCGGID 261 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGv-----lvvn~~~~~ 261 (345)
+|.+.+.- .++|.+-..-+++..+.+.|+|+|. +.+-+..+.
T Consensus 107 vIs~SLVL-NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 107 VISLSLVL-NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred EEEEEEEE-eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 99987655 3567777778999999999999999 766555443
No 336
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.12 E-value=0.41 Score=44.56 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=36.6
Q ss_pred CCCEEEEeecccHHHHHHHHhCC--------CCEEEEEECCHHHHHHHHHhcCC
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWP--------SLKLEGWEIDEILIDKVRDYFGL 186 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p--------~~~v~~VEidp~vi~~A~~~f~~ 186 (345)
+-+|+++|.|.|+++..+++... ..+++.||++|.+.+.-++.+.-
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 46899999999999999887532 26999999999999998888753
No 337
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.12 E-value=3.4 Score=38.98 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc-ccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS-EDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l-~~~~~~ 216 (345)
.+..+||+.|+| .|..+.++++.. +.+|++++.+++..+.+++ ++... -+.....+....+ ...++.
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~-~g~~~---------~~~~~~~~~~~~~~~~~~~~ 232 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE-LGADE---------VLNSLDDSPKDKKAAGLGGG 232 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH-hCCCE---------EEcCCCcCHHHHHHHhcCCC
Confidence 456789997755 355666666654 5789999999999998866 44321 0111111111111 123567
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
+|+++. ... ..+.++.+.+.|+++|.++.-
T Consensus 233 ~D~vid-~~g---------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 233 FDVIFD-FVG---------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ceEEEE-CCC---------CHHHHHHHHHHhhcCCEEEEE
Confidence 998773 211 134678888999999998754
No 338
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.07 E-value=2 Score=40.81 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=64.1
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCCC-----CCCcEEEEEccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPTA-----TGGVLQVHIGDVFS 208 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~~-----~~~rv~v~~gDa~~ 208 (345)
-++|.+||+| |..++..++.. +.+|+++|.+++.++.+++... +........ .-.+++ ...|. +
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~-~ 79 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNL-E 79 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCH-H
Confidence 3679999998 66677666653 6899999999999876554321 000000000 001122 22222 1
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
- -+.-|+||.-+.... -...++|+++.+.++|+.+++.|+.+..
T Consensus 80 ~----~~~aD~Vieav~e~~-----~~k~~v~~~l~~~~~~~~il~s~tS~i~ 123 (295)
T PLN02545 80 E----LRDADFIIEAIVESE-----DLKKKLFSELDRICKPSAILASNTSSIS 123 (295)
T ss_pred H----hCCCCEEEEcCccCH-----HHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence 1 245799997554321 1345678888888999988887877654
No 339
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.71 E-value=2 Score=39.40 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=50.8
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
++++++|+| |+++++.|.+. +-.|+.+|.|++.++....- ....+++++|+.+- |++ .-..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~~------------~~~~~~v~gd~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLAD------------ELDTHVVIGDATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhhh------------hcceEEEEecCCCHHHHHhcCCCc
Confidence 468999999 66777777763 56899999999998763220 12378899998863 333 3578
Q ss_pred ccEEEEcCCC
Q 038076 217 YAGIVVDLFS 226 (345)
Q Consensus 217 yD~Ii~D~f~ 226 (345)
+|+++....+
T Consensus 67 aD~vva~t~~ 76 (225)
T COG0569 67 ADAVVAATGN 76 (225)
T ss_pred CCEEEEeeCC
Confidence 9999975433
No 340
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.62 E-value=3.2 Score=39.21 Aligned_cols=95 Identities=12% Similarity=0.113 Sum_probs=59.6
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~ 215 (345)
.+..+||+.|+ |.|..+..+++.. +.+|.++.-+++-.+.+++ ++... -+.....|..+.+.. .++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~-~Ga~~---------vi~~~~~~~~~~v~~~~~~ 210 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE-LGFDA---------VFNYKTVSLEEALKEAAPD 210 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCCE---------EEeCCCccHHHHHHHHCCC
Confidence 45678999984 4556666677664 5789999999999999888 55321 011111122221211 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+ |... .+.++...+.|+++|.++.
T Consensus 211 gvd~vl-d~~g----------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 211 GIDCYF-DNVG----------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CcEEEE-ECCC----------HHHHHHHHHhhccCCEEEE
Confidence 699887 4322 1456778889999999864
No 341
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.47 E-value=3.4 Score=43.02 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=59.7
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~ 216 (345)
.+++++|+| |-.+++.+.+ .+.+++++|.|++.++.++++ + .++++||+.+- +++ .-++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~--~g~~vvvId~d~~~~~~~~~~-g-------------~~~i~GD~~~~~~L~~a~i~~ 481 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLA--AGIPLVVIETSRTRVDELRER-G-------------IRAVLGNAANEEIMQLAHLDC 481 (558)
T ss_pred CCEEEECCChHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHC-C-------------CeEEEcCCCCHHHHHhcCccc
Confidence 689999987 3344555544 257899999999999988763 2 56899999874 222 3468
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEe
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNC 257 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~ 257 (345)
.|.+++...+.. .+.. .-.+.+.++|+-.++.-+
T Consensus 482 a~~viv~~~~~~------~~~~-iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 482 ARWLLLTIPNGY------EAGE-IVASAREKRPDIEIIARA 515 (558)
T ss_pred cCEEEEEcCChH------HHHH-HHHHHHHHCCCCeEEEEE
Confidence 998877543321 1122 333345567777666544
No 342
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=87.39 E-value=2.8 Score=36.01 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=57.4
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
+|.+||+|.+..+....-...+.+|+....|++.++.-++.-.....-......+++++ ..|..+.+ +..|+|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----CcccEEEe
Confidence 47899999665444322222357999999999888766653321110000011224443 45554443 45799998
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
-+ |. ..-+++++.++..|+++ ..++++..
T Consensus 76 av------Ps-~~~~~~~~~l~~~l~~~-~~ii~~~K 104 (157)
T PF01210_consen 76 AV------PS-QAHREVLEQLAPYLKKG-QIIISATK 104 (157)
T ss_dssp -S-------G-GGHHHHHHHHTTTSHTT--EEEETS-
T ss_pred cc------cH-HHHHHHHHHHhhccCCC-CEEEEecC
Confidence 43 32 24578999999999555 44445543
No 343
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.06 E-value=2 Score=38.03 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=59.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC--C---CCCCCC-----CCCCcEEEEEccccccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--S---DLEKPT-----ATGGVLQVHIGDVFSPS 210 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~---~~~~~~-----~~~~rv~v~~gDa~~~l 210 (345)
+|.+||+| |..++..++. .+.+|+.+|.|++.++.++++... . ...+.. ..-.++++ ..|.-+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~-- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEE-- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHH--
Confidence 47889987 2234444443 379999999999999888766531 0 000000 00123442 233222
Q ss_pred ccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 211 EDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.. ..|+||= .+|+.+ ...++|+++.+.+.|+-+++.|..+..
T Consensus 76 --~~-~adlViE------ai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 76 --AV-DADLVIE------AIPEDLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp --GC-TESEEEE-------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred --Hh-hhheehh------hccccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 22 7888884 234333 457899999999999999999977655
No 344
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=86.85 E-value=2.6 Score=42.78 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=29.3
Q ss_pred CEEEEeecccHHHHHHHH----h---CCCCEEEEEECCHHHHHH----HHHhcC
Q 038076 143 PIAIYGLGGGTAAHLMLD----L---WPSLKLEGWEIDEILIDK----VRDYFG 185 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~----~---~p~~~v~~VEidp~vi~~----A~~~f~ 185 (345)
+|.+||+|+. .+..+.+ . .+..+|.-+|||++-++. +++++.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~ 54 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFK 54 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 6899999986 4433332 2 455899999999976654 666654
No 345
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.84 E-value=1.8 Score=41.21 Aligned_cols=108 Identities=13% Similarity=0.154 Sum_probs=64.9
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCC--CCC-CCCCC-------CCCcEEEEEcccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGL--SDL-EKPTA-------TGGVLQVHIGDVFSP 209 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--~~~-~~~~~-------~~~rv~v~~gDa~~~ 209 (345)
++|.+||+| |+.++..++. .+.+|+.+|.+|+.++.+++...- ... .+... .-.|+++ ..|. +-
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~ 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR--AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH
Confidence 589999998 6666666654 378999999999999876544210 000 00000 0112322 1222 11
Q ss_pred cccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhcc-CCCcEEEEEecCCCC
Q 038076 210 SEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRL-MPNGRFMVNCGGIDG 262 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L-~pgGvlvvn~~~~~~ 262 (345)
-+..|+||--++... -...+.|..+.+.+ +|+-+++.|..+.+.
T Consensus 82 ----~~~~d~ViEav~E~~-----~~K~~l~~~l~~~~~~~~~il~snTS~~~~ 126 (286)
T PRK07819 82 ----FADRQLVIEAVVEDE-----AVKTEIFAELDKVVTDPDAVLASNTSSIPI 126 (286)
T ss_pred ----hCCCCEEEEecccCH-----HHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 255788886443321 24567888888888 788888887776553
No 346
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.75 E-value=7.4 Score=36.94 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc-CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~-~~ 214 (345)
.+..+||+.|. |.|..+.++++.. +.++.++.-+++-.+.+++ ++... -+..... +..+.++. .+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~-lGa~~---------vi~~~~~~~~~~~~~~~~~ 205 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKK-LGFDV---------AFNYKTVKSLEETLKKASP 205 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCCCE---------EEeccccccHHHHHHHhCC
Confidence 35678999984 4566666777654 5789999999998888876 45321 0111110 11111211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+ |... .+.+....+.|+++|.++.
T Consensus 206 ~gvdvv~-d~~G----------~~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 206 DGYDCYF-DNVG----------GEFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CCeEEEE-ECCC----------HHHHHHHHHHhCcCcEEEE
Confidence 5699888 4322 1245777889999999984
No 347
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.61 E-value=6.9 Score=36.80 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=55.0
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|++||+| |+.++..|.+. +.+|+.++.+++.++..++. ++.- .+....... ....-... .+.+|+|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~-g~~~------~~~~~~~~~-~~~~~~~~-~~~~d~v 70 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNEN-GLRL------EDGEITVPV-LAADDPAE-LGPQDLV 70 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHc-CCcc------cCCceeecc-cCCCChhH-cCCCCEE
Confidence 68999988 44556555542 56899999988877665543 3210 011111000 00000111 2689999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
++-... ....+.++.++..+.++..++.
T Consensus 71 ila~k~-------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 71 ILAVKA-------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEeccc-------ccHHHHHHHHhhhcCCCCEEEE
Confidence 985432 2357788889888988766653
No 348
>PLN02256 arogenate dehydrogenase
Probab=86.53 E-value=8.5 Score=37.04 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
...+|.+||+| ||++++.+.+. +.+|.+++.++. .+.+++ ++. .. ..|..+.+ ....
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~-~~~a~~-~gv-------------~~-~~~~~e~~---~~~a 93 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDY-SDIAAE-LGV-------------SF-FRDPDDFC---EEHP 93 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccH-HHHHHH-cCC-------------ee-eCCHHHHh---hCCC
Confidence 45689999998 67777777653 468999999974 344443 221 11 22322222 2357
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHH-HhccCCCcEEEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKL-KDRLMPNGRFMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~-~~~L~pgGvlvvn~~~ 259 (345)
|+|++-+ |+. ...+.+..+ ...++++. +++++.+
T Consensus 94 DvVilav------p~~-~~~~vl~~l~~~~l~~~~-iviDv~S 128 (304)
T PLN02256 94 DVVLLCT------SIL-STEAVLRSLPLQRLKRST-LFVDVLS 128 (304)
T ss_pred CEEEEec------CHH-HHHHHHHhhhhhccCCCC-EEEecCC
Confidence 9999843 222 456777777 55677765 5567765
No 349
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=86.43 E-value=2.5 Score=40.91 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=66.3
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCC----------------------------
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEK---------------------------- 191 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~---------------------------- 191 (345)
.+-+||+=|||.|.++..|....+.++ +-|.+--|+=...--+..-..++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~q--GNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQ--GNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccccc--ccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 356799999999999999988755444 33766555432111000000000
Q ss_pred --CC---CCCCcEEEEEcccccccccC--CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 192 --PT---ATGGVLQVHIGDVFSPSEDA--SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 192 --~~---~~~~rv~v~~gDa~~~l~~~--~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.. .....+.+--||..++-..+ .+.||+|+..-|-... ---.|+++.+...|+|||+.+ |++.-
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa----~NileYi~tI~~iLk~GGvWi-NlGPL 298 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA----HNILEYIDTIYKILKPGGVWI-NLGPL 298 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech----HHHHHHHHHHHHhccCCcEEE-eccce
Confidence 00 11123444557766654332 3579999865433211 123589999999999999985 77643
No 350
>PRK08655 prephenate dehydrogenase; Provisional
Probab=86.27 E-value=14 Score=37.42 Aligned_cols=88 Identities=10% Similarity=0.143 Sum_probs=52.7
Q ss_pred CEEEEe-ec--ccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 143 PIAIYG-LG--GGTAAHLMLDLWPSLKLEGWEIDEILI-DKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 143 ~VLiIG-~G--~G~~~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+|| +| |+++++.+.+. +.+|++++.+++.. +.+.+ .+. . ...|..+. -+..|
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~-~gv-------------~-~~~~~~e~----~~~aD 60 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE-LGV-------------E-YANDNIDA----AKDAD 60 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH-cCC-------------e-eccCHHHH----hccCC
Confidence 688998 45 34566666542 46899999998775 44443 221 1 11222222 24579
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+||+-+ |.. ...+.++.+...++++. +++++.+
T Consensus 61 vVIlav------p~~-~~~~vl~~l~~~l~~~~-iViDvsS 93 (437)
T PRK08655 61 IVIISV------PIN-VTEDVIKEVAPHVKEGS-LLMDVTS 93 (437)
T ss_pred EEEEec------CHH-HHHHHHHHHHhhCCCCC-EEEEccc
Confidence 999844 222 34577888888888766 4556654
No 351
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.22 E-value=4.2 Score=39.43 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=60.2
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc-CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~-~~ 214 (345)
.+..+||+.|+ |.|..+.++++.. +.+|.+++.+++-.+.+++.++... -+..... |..+.+.. .+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~---------vi~~~~~~~~~~~i~~~~~ 226 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDE---------AFNYKEEPDLDAALKRYFP 226 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCE---------EEECCCcccHHHHHHHHCC
Confidence 35678999997 3566777777764 5789999999998888875555321 0111111 22222221 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+ |... .+.+..+.+.|+++|.+++
T Consensus 227 ~gvD~v~-d~vG----------~~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 227 EGIDIYF-DNVG----------GDMLDAALLNMKIHGRIAV 256 (348)
T ss_pred CCcEEEE-ECCC----------HHHHHHHHHHhccCCEEEE
Confidence 4689887 4322 1356778889999999874
No 352
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.86 E-value=4.9 Score=38.03 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=64.2
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc----------C-CCCCCCCCCCCCcEEEEEcccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF----------G-LSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f----------~-~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
-++|.+||+| |..++..+++ .+.+|+++|.+++.++.+.+.. + ++... ....-.++++. .|.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~-~~~- 78 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEA-RAAALARISTA-TDL- 78 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEee-CCH-
Confidence 3679999998 5556666654 3678999999999988754321 1 00000 00000223332 222
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+- -+..|+||.-++... -...++++.+...++|+.+++.|+.+..
T Consensus 79 ~~----~~~aD~Vieavpe~~-----~~k~~~~~~l~~~~~~~~ii~s~ts~~~ 123 (292)
T PRK07530 79 ED----LADCDLVIEAATEDE-----TVKRKIFAQLCPVLKPEAILATNTSSIS 123 (292)
T ss_pred HH----hcCCCEEEEcCcCCH-----HHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 21 246799997543321 1345788889999999988877776554
No 353
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.79 E-value=3.9 Score=39.28 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=57.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+.++||+.|+| .|..+.++++......+.+++.+++-.+++++ ++... -+.....|..+-+.. ..+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~~~---------~v~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGATD---------IVDYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCce---------EecCCCCCHHHHHHHHhCCC
Confidence 356789999754 34444455555544479999999999999887 44321 111111121111111 245
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+--. . ..+.+..+.+.|+++|.++.
T Consensus 235 ~~d~vld~~-g---------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 235 GVDAVIIAG-G---------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred CCcEEEECC-C---------CHHHHHHHHHHhhcCCEEEE
Confidence 699888421 1 12467888899999998873
No 354
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.66 E-value=8.8 Score=36.55 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..+++.+.+ .+.+|++.|.+++..+.+++ .+. + ...+..+.++. .+..|+|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~-~g~-------------~-~~~s~~~~~~~-~~~advV 63 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRE--DGHEVVGYDVNQEAVDVAGK-LGI-------------T-ARHSLEELVSK-LEAPRTI 63 (299)
T ss_pred EEEEEcccHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHH-CCC-------------e-ecCCHHHHHHh-CCCCCEE
Confidence 57889888 4566666665 35789999999988776644 221 1 11232232221 1236888
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+.+. -...+.+..+...|++| .+++++.+...
T Consensus 64 i~~vp~~------~~~~~v~~~i~~~l~~g-~ivid~st~~~ 98 (299)
T PRK12490 64 WVMVPAG------EVTESVIKDLYPLLSPG-DIVVDGGNSRY 98 (299)
T ss_pred EEEecCc------hHHHHHHHHHhccCCCC-CEEEECCCCCc
Confidence 8755432 13355667777777665 56678866554
No 355
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.62 E-value=3 Score=41.84 Aligned_cols=71 Identities=18% Similarity=0.129 Sum_probs=48.3
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cc-cCC
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SE-DAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~-~~~ 214 (345)
..++++++|+| |-.+++.|.+ .+..++++|.||+.++..++.+ +.+.++.||+.+. +. ..-
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~--~~~~v~vid~~~~~~~~~~~~~------------~~~~~i~gd~~~~~~L~~~~~ 295 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEK--EGYSVKLIERDPERAEELAEEL------------PNTLVLHGDGTDQELLEEEGI 295 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCHHHHHHHHHHC------------CCCeEEECCCCCHHHHHhcCC
Confidence 46789999986 2233444333 3578999999999988777643 1356899999753 22 234
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
+++|.|++-.
T Consensus 296 ~~a~~vi~~~ 305 (453)
T PRK09496 296 DEADAFIALT 305 (453)
T ss_pred ccCCEEEECC
Confidence 6899988743
No 356
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.54 E-value=3.7 Score=39.67 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=56.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc--
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-- 212 (345)
.+..+|+++|+|+ |..+..+++.. +.+|.+++.+++-.+.+++ ++... -+.... .|..+.+..
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~~~~~~~~t 233 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG-FGADL---------TLNPKDKSAREVKKLIKAFA 233 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH-hCCce---------EecCccccHHHHHHHHHhhc
Confidence 3567899999853 55555666655 4689999999999999976 45321 011111 122221211
Q ss_pred CCCcccE---EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAG---IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~---Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|. +++|.... ...++.+.+.|+++|.+++
T Consensus 234 ~~~g~d~~~d~v~d~~g~---------~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 234 KARGLRSTGWKIFECSGS---------KPGQESALSLLSHGGTLVV 270 (349)
T ss_pred ccCCCCCCcCEEEECCCC---------hHHHHHHHHHHhcCCeEEE
Confidence 1234551 34454321 2356667788999999864
No 357
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=85.48 E-value=1.8 Score=43.71 Aligned_cols=101 Identities=13% Similarity=0.093 Sum_probs=64.5
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVV 222 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~ 222 (345)
.||+||.|+|-+.....+. ..-.++++|.=.-|.+.|++-....+. ..++++|..---+.-.....+-|+++-
T Consensus 69 ~vLdigtGTGLLSmMAvra-gaD~vtA~EvfkPM~d~arkI~~kng~------SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA-GADSVTACEVFKPMVDLARKIMHKNGM------SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEccCCccHHHHHHHHh-cCCeEEeehhhchHHHHHHHHHhcCCC------ccceeeeccccceeeecCcchhhhhhH
Confidence 4789999999998877765 356799999999999999987654432 456777765443332222356788876
Q ss_pred cCCCCCCCCCCcchHHHHHHHHhccCCCcE
Q 038076 223 DLFSEGKVLPQLEEVATWLKLKDRLMPNGR 252 (345)
Q Consensus 223 D~f~~~~~p~~l~t~ef~~~~~~~L~pgGv 252 (345)
..|+..-+-.. ...-|+.+.++|-..|+
T Consensus 142 e~fdtEligeG--alps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 142 EDFDTELIGEG--ALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhhhccc--cchhHHHHHHHhcccCC
Confidence 66653211110 01235666666644443
No 358
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.43 E-value=8.1 Score=37.12 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=54.6
Q ss_pred CEEEEeecc-c-HHHHHHHHhCCCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLGG-G-TAAHLMLDLWPSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G~-G-~~~~~l~~~~p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|.+||+|. | +++..+.......++..+|++++..+ .+.+.-.... .. +...+..+|-. .-+..|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~-----~~-~~~~i~~~d~~-----~l~~aDi 70 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP-----FV-KPVRIYAGDYA-----DCKGADV 70 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc-----cc-CCeEEeeCCHH-----HhCCCCE
Confidence 589999983 3 44444443322368999999987665 3333322111 11 22344444422 2367899
Q ss_pred EEEcCCCCCCCCCCc-----chHHHHHHHHhc---cCCCcEEEEE
Q 038076 220 IVVDLFSEGKVLPQL-----EEVATWLKLKDR---LMPNGRFMVN 256 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l-----~t~ef~~~~~~~---L~pgGvlvvn 256 (345)
|++-+..+....... .+.+.++.+.+. ..|+|++++-
T Consensus 71 Viita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~ 115 (308)
T cd05292 71 VVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115 (308)
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 998665443221111 134445544433 5688886643
No 359
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.40 E-value=5.4 Score=37.63 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=52.6
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|++||+| |+.++..|.+. +.+|+.++. ++-++..++. ++.-. ..+....+ ......-.....+.+|+|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~-g~~~~----~~~~~~~~-~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRER-GLVIR----SDHGDAVV-PGPVITDPEELTGPFDLV 72 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhC-CeEEE----eCCCeEEe-cceeecCHHHccCCCCEE
Confidence 68999988 44455555543 567999998 6666655542 21100 00111111 000001011123679999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+-.... ...+.++.++..++++.+++
T Consensus 73 ilavk~~-------~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 73 ILAVKAY-------QLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred EEEeccc-------CHHHHHHHHHhhcCCCCEEE
Confidence 9854321 34678888888888876654
No 360
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=85.39 E-value=7.5 Score=37.14 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=55.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+| .|..+.++++..+..++.+++.++.-.+.++++ +... -+.....|....+.. ...
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~---------~v~~~~~~~~~~i~~~~~~~ 234 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GATH---------TVNSAKGDAIEQVLELTDGR 234 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CCCc---------eeccccccHHHHHHHHhCCC
Confidence 456788887643 222333445555437899999999888888764 3221 111111222111111 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+ |... ....++.+.+.|+++|.++.
T Consensus 235 ~~d~vl-d~~g---------~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 235 GVDVVI-EAVG---------IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCEEE-ECCC---------CHHHHHHHHHhccCCcEEEE
Confidence 699887 3321 12356777899999999863
No 361
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=85.34 E-value=3.7 Score=39.33 Aligned_cols=93 Identities=11% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE-EcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH-IGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~-~gDa~~~l~~~~~~y 217 (345)
.+++|++||.|. |......++.. +.+|++++.++.-.+.++.. +. +.+ ..+..+. -..+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~-G~-------------~~~~~~~l~~~----l~~a 211 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM-GL-------------SPFHLSELAEE----VGKI 211 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-CC-------------eeecHHHHHHH----hCCC
Confidence 578999999873 33333333444 47999999999877666552 21 111 1222222 2469
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+||.-. |..+.+.+ ..+.++|+++ ++++.....
T Consensus 212 DiVI~t~------p~~~i~~~----~l~~~~~g~v-IIDla~~pg 245 (296)
T PRK08306 212 DIIFNTI------PALVLTKE----VLSKMPPEAL-IIDLASKPG 245 (296)
T ss_pred CEEEECC------ChhhhhHH----HHHcCCCCcE-EEEEccCCC
Confidence 9999732 33334444 3456777654 567765554
No 362
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.30 E-value=5.4 Score=38.17 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD 182 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~ 182 (345)
++|.+||+| |+.++..+++. +.+|+++|.+++.++.+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPA 43 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHH
Confidence 479999988 55677666653 5789999999998886653
No 363
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.24 E-value=6.5 Score=37.74 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+.|+| .|..+.++++.. +.+|++++.+++-.+.+++. +... ++. ..+ ...+.+
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~-Ga~~------------vi~--~~~---~~~~~~ 224 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL-GAAS------------AGG--AYD---TPPEPL 224 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh-CCce------------ecc--ccc---cCcccc
Confidence 356789999964 344555566554 56899999999999999884 3221 111 001 112458
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+++... . . .+.+....+.|+++|.+++
T Consensus 225 d~~i~~~--~--~------~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 225 DAAILFA--P--A------GGLVPPALEALDRGGVLAV 252 (329)
T ss_pred eEEEECC--C--c------HHHHHHHHHhhCCCcEEEE
Confidence 8765421 1 1 1367788889999999864
No 364
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.14 E-value=11 Score=35.81 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..+++.+.+ .+.+|.++|.+++..+.+.+. + +++ ..+..+..+. -+.-|+|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~--~g~~v~v~dr~~~~~~~~~~~-g-------------~~~-~~~~~e~~~~-~~~~dvv 63 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLR--GGHEVVGYDRNPEAVEALAEE-G-------------ATG-ADSLEELVAK-LPAPRVV 63 (301)
T ss_pred EEEEEcccHHHHHHHHHHHH--CCCeEEEEECCHHHHHHHHHC-C-------------Cee-cCCHHHHHhh-cCCCCEE
Confidence 58889988 4556666665 357899999999888766542 2 111 1233333221 1235888
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+.+. -...+.+..+...|++| .+++++.+...
T Consensus 64 i~~v~~~------~~~~~v~~~l~~~l~~g-~ivid~st~~~ 98 (301)
T PRK09599 64 WLMVPAG------EITDATIDELAPLLSPG-DIVIDGGNSYY 98 (301)
T ss_pred EEEecCC------cHHHHHHHHHHhhCCCC-CEEEeCCCCCh
Confidence 8754332 13355667777888776 55567765554
No 365
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=84.90 E-value=3 Score=43.07 Aligned_cols=109 Identities=15% Similarity=0.124 Sum_probs=66.5
Q ss_pred CCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCC-----CCCCCcEEEEEccccc
Q 038076 141 NGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKP-----TATGGVLQVHIGDVFS 208 (345)
Q Consensus 141 p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~-----~~~~~rv~v~~gDa~~ 208 (345)
-++|.+||+| |+.++..++. .+..|+++|.+++.++.++++.. +....+. ...-.|++.. .|...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~--aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~ 83 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQ--AGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALAD 83 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 4789999998 5556666654 37899999999999988644331 0000000 0001123332 22211
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-..-|+||--++.... ....+|..+.+.++|+.+++.|+.+.+.
T Consensus 84 -----~~~aDlViEav~E~~~-----vK~~vf~~l~~~~~~~ailasntStl~i 127 (507)
T PRK08268 84 -----LADCDLVVEAIVERLD-----VKQALFAQLEAIVSPDCILATNTSSLSI 127 (507)
T ss_pred -----hCCCCEEEEcCcccHH-----HHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 1368999975544321 3456788888888899888888877654
No 366
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.88 E-value=1.4 Score=41.67 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-----------CCCCCCCCCCCCCcEEEEEccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-----------GLSDLEKPTATGGVLQVHIGDVFS 208 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-----------~~~~~~~~~~~~~rv~v~~gDa~~ 208 (345)
++|.+||+| |..++..+.+ .+.+|+.+|.+++.++.+++.. .+...........++++. .|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~ 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF--HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH
Confidence 579999998 4555555554 3578999999999888776542 110000000001233322 23222
Q ss_pred ccccCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 209 PSEDASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 209 ~l~~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.-+.-|+||.-++. .+ ...+.++++...++++-+++.|..+.
T Consensus 81 ----a~~~aDlVieavpe------~~~~k~~~~~~l~~~~~~~~ii~sntSt~ 123 (287)
T PRK08293 81 ----AVKDADLVIEAVPE------DPEIKGDFYEELAKVAPEKTIFATNSSTL 123 (287)
T ss_pred ----HhcCCCEEEEeccC------CHHHHHHHHHHHHhhCCCCCEEEECcccC
Confidence 12567999975432 22 35678888888888888776665543
No 367
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=84.76 E-value=7.9 Score=39.67 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=62.5
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+.+++.|.+. +.+|++.+.+++.++...+..... +..++ ...|..++++.. ++.|+|
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~~--------g~~i~-~~~s~~e~v~~l-~~~d~I 70 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKEG--------NTRVK-GYHTLEELVNSL-KKPRKV 70 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhhc--------CCcce-ecCCHHHHHhcC-CCCCEE
Confidence 68899999 66777777753 568999999999988665532110 11111 223444444321 246877
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+..+ -...+.++.+...|++|- +++++.+...
T Consensus 71 il~v~~~------~~v~~vi~~l~~~L~~g~-iIID~gn~~~ 105 (470)
T PTZ00142 71 ILLIKAG------EAVDETIDNLLPLLEKGD-IIIDGGNEWY 105 (470)
T ss_pred EEEeCCh------HHHHHHHHHHHhhCCCCC-EEEECCCCCH
Confidence 7644332 244667788888888664 5577776654
No 368
>PLN02712 arogenate dehydrogenase
Probab=84.71 E-value=9.2 Score=40.95 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=56.5
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+.+|.+||+| |+.+++.+.+. +.+|.+++.++.. +.|+++ + +.. ..|..+.+ .+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~~-G-------------v~~-~~d~~e~~---~~~a 109 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARSL-G-------------VSF-FLDPHDLC---ERHP 109 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHHc-C-------------CEE-eCCHHHHh---hcCC
Confidence 45789999998 67788777754 4689999998553 444432 2 111 22333321 2347
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHH-hccCCCcEEEEEecCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLK-DRLMPNGRFMVNCGGI 260 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~-~~L~pgGvlvvn~~~~ 260 (345)
|+|++-+ |.. .+.+++..+. ..+++|. +++++.+.
T Consensus 110 DvViLav------P~~-~~~~vl~~l~~~~l~~g~-iVvDv~Sv 145 (667)
T PLN02712 110 DVILLCT------SII-STENVLKSLPLQRLKRNT-LFVDVLSV 145 (667)
T ss_pred CEEEEcC------CHH-HHHHHHHhhhhhcCCCCe-EEEECCCC
Confidence 9999843 221 4566777765 4566655 77788633
No 369
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.60 E-value=5.7 Score=38.54 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=61.3
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+.++||+.|+ |-|+++.+|++.... ++.++=-+++=.+.+++... +.-+.+...|..+-+++ .+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGA----------d~vi~y~~~~~~~~v~~~t~g 209 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGA----------DHVINYREEDFVEQVRELTGG 209 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCC----------CEEEcCCcccHHHHHHHHcCC
Confidence 35688999995 466888899988755 44444445555557777553 12233334443333322 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEec
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCG 258 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~ 258 (345)
+.+|+|+-- ...+.+....+.|+++|.++..-.
T Consensus 210 ~gvDvv~D~-----------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDT-----------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEEC-----------CCHHHHHHHHHHhccCCEEEEEec
Confidence 579999842 123567778899999999886444
No 370
>PRK10637 cysG siroheme synthase; Provisional
Probab=84.57 E-value=4.6 Score=41.08 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=43.3
Q ss_pred hcccc--CCCCCEEEEeecccHHHH--HHHHhCCCCEEEEE--ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 134 SLPAI--VPNGPIAIYGLGGGTAAH--LMLDLWPSLKLEGW--EIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 134 ~l~~~--~~p~~VLiIG~G~G~~~~--~l~~~~p~~~v~~V--Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.+|.+ ...++||++|+|.=..-+ .+++ -+.+|++| |+++++-+++. ..+++++..+
T Consensus 3 ~~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~--~ga~v~visp~~~~~~~~l~~--------------~~~i~~~~~~-- 64 (457)
T PRK10637 3 HLPIFCQLRDRDCLLVGGGDVAERKARLLLD--AGARLTVNALAFIPQFTAWAD--------------AGMLTLVEGP-- 64 (457)
T ss_pred eeceEEEcCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHh--------------CCCEEEEeCC--
Confidence 45543 467999999988544433 3333 35677777 77888766543 2457776644
Q ss_pred cccccCCCcccEEEEcC
Q 038076 208 SPSEDASGRYAGIVVDL 224 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~ 224 (345)
|....-+.+|+||...
T Consensus 65 -~~~~dl~~~~lv~~at 80 (457)
T PRK10637 65 -FDESLLDTCWLAIAAT 80 (457)
T ss_pred -CChHHhCCCEEEEECC
Confidence 3222235678888643
No 371
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.17 E-value=3.4 Score=37.17 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECC
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEID 173 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEid 173 (345)
...+|+++|+|+ |+ ++..|. ..+-.+++.+|-|
T Consensus 20 ~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCC
Confidence 467999999983 44 444444 4455699999988
No 372
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=84.13 E-value=4.7 Score=38.42 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=54.9
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~~ 216 (345)
+..+||+.|+| .|..+..+++......+.+++.++...+.++++ +.. .-+.....+..+.+.. .++.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~~---------~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GAT---------DIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CCc---------EEEcCCcchHHHHHHHHcCCCC
Confidence 45678885543 244444555555434788889999888887764 211 1111111222222221 2357
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+- .... .+.++.+.+.|+++|.++.
T Consensus 237 ~d~vld-~~g~---------~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 237 VDCVIE-AVGF---------EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CcEEEE-ccCC---------HHHHHHHHHHhhcCCEEEE
Confidence 998873 2111 2467888899999998763
No 373
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=83.96 E-value=17 Score=34.34 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=86.2
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCC----CEEEEEECCHHHHHH-----HHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPS----LKLEGWEIDEILIDK-----VRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~----~~v~~VEidp~vi~~-----A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
..+....++|.|..+=++.+++.+.. .+..-+|++..+++. .++|.+++ +.-+.+|-..-
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-----------v~~l~~~~~~~ 145 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-----------VNALCGDYELA 145 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-----------EeehhhhHHHH
Confidence 35678999999999989888876544 789999999999874 34554432 55566776666
Q ss_pred cccCCCcccEEEEcCCC-CCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCC--CccccCCCCCCCccchHHHHHHH
Q 038076 210 SEDASGRYAGIVVDLFS-EGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGV--SDMTYGAARPKSMNDVWMHNSAI 286 (345)
Q Consensus 210 l~~~~~~yD~Ii~D~f~-~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~--~~~~~g~~~~~~~d~~~~~~~~~ 286 (345)
|...++.=--+++=+-+ -+.. .+-...-|+..++..|+||-.+.+-+-...+. .+...++-+.+ ...+..+++
T Consensus 146 La~~~~~~~Rl~~flGStlGN~-tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~gV---Ta~FnlNvL 221 (321)
T COG4301 146 LAELPRGGRRLFVFLGSTLGNL-TPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQGV---TAEFNLNVL 221 (321)
T ss_pred HhcccCCCeEEEEEecccccCC-ChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCccch---HHHHHHHHH
Confidence 65544222222221111 1111 11133569999999999999988765433320 00000000001 125677888
Q ss_pred HHHHHHCCCC
Q 038076 287 RALSEAFPGK 296 (345)
Q Consensus 287 ~~l~~~F~~~ 296 (345)
+.++.+|.+.
T Consensus 222 a~lNr~f~~n 231 (321)
T COG4301 222 AHLNRVFGGN 231 (321)
T ss_pred HHHHHHhccC
Confidence 8888888754
No 374
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=83.85 E-value=8.2 Score=41.53 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
++|.+||+| |+.+++.+.+.....+|.++|.+++-.+.++++ +... . ...|..+. -+..|+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~~--------~----~~~~~~~~----~~~aDv 66 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVID--------R----GEEDLAEA----VSGADV 66 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCCC--------c----ccCCHHHH----hcCCCE
Confidence 679999988 566777766542125799999999988877653 2110 0 01121121 246799
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|++-+ |+. ...+.++.++..++++ .+++++.+..
T Consensus 67 Vilav------p~~-~~~~vl~~l~~~~~~~-~ii~d~~svk 100 (735)
T PRK14806 67 IVLAV------PVL-AMEKVLADLKPLLSEH-AIVTDVGSTK 100 (735)
T ss_pred EEECC------CHH-HHHHHHHHHHHhcCCC-cEEEEcCCCc
Confidence 99743 222 3567788888888765 5666666544
No 375
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=83.82 E-value=5.5 Score=37.30 Aligned_cols=111 Identities=20% Similarity=0.178 Sum_probs=64.3
Q ss_pred CCCCCEEEEeecccHHHHH---HHHhC--CCCEEEEEECCH--------------------------HHHHHHHHhcCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHL---MLDLW--PSLKLEGWEIDE--------------------------ILIDKVRDYFGLS 187 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~---l~~~~--p~~~v~~VEidp--------------------------~vi~~A~~~f~~~ 187 (345)
.-|..+++.|+=-|..+.. +++.+ ++-++.+.|-=. .-.+..+++|.--
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 3578999999866654433 33322 345677666311 1234445555322
Q ss_pred CCCCCCCCCCcEEEEEccccccccc-CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 188 DLEKPTATGGVLQVHIGDVFSPSED-ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 188 ~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
. ..+++++++.|+..+.+.. +.+++-++-+|+.- + -.|.+.++.++.+|.|||++++.=+..
T Consensus 153 g-----l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl--Y----esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 153 G-----LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL--Y----ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp T-----TSSTTEEEEES-HHHHCCC-TT--EEEEEE---S--H----HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred C-----CCcccEEEECCcchhhhccCCCccEEEEEEeccc--h----HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 1 2357999999999888865 45677777777522 1 136789999999999999999865544
No 376
>PLN02740 Alcohol dehydrogenase-like
Probab=83.39 E-value=5.3 Score=39.21 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
.+..+||++|+| -|..+.++++.....+|.+++.+++-.+.+++ ++... -+.... .|..+.+.. ..
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~~---------~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGITD---------FINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCCcE---------EEecccccchHHHHHHHHhC
Confidence 356789999865 34444555665543479999999999999977 34321 111111 011122221 22
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+- .... .+.++...+.++++ |.+++
T Consensus 267 ~g~dvvid-~~G~---------~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 267 GGVDYSFE-CAGN---------VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCEEEE-CCCC---------hHHHHHHHHhhhcCCCEEEE
Confidence 36998873 2221 24567777788886 88654
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.28 E-value=4.2 Score=34.13 Aligned_cols=96 Identities=19% Similarity=0.220 Sum_probs=52.8
Q ss_pred EEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-cCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 144 IAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDY-FGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 144 VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~-f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
|+++|+| -| .++..|.+ .+.+|+.+.-.+ -.+.-++. +.+.. .+.+-.+.............+.||+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIKEQGLTITG------PDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHHHHCEEEEE------TTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhhheeEEEEe------cccceecccccccCcchhccCCCcEE
Confidence 6788887 33 34444433 678999999988 44433322 21111 01011111111111001235789999
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
|+-. ......+.++.++..++++..+++
T Consensus 72 iv~v-------Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 72 IVAV-------KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp EE-S-------SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred EEEe-------cccchHHHHHHHhhccCCCcEEEE
Confidence 9843 223567889999999999976653
No 378
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.14 E-value=4.9 Score=35.25 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=62.5
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..++|.+||+| .|......++.+ +.+|.+++..+.-.+.+... + + ...+..+.+ ++.|
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~~~~-~-------------~--~~~~l~ell----~~aD 93 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGADEF-G-------------V--EYVSLDELL----AQAD 93 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHHHHT-T-------------E--EESSHHHHH----HH-S
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhcccc-c-------------c--eeeehhhhc----chhh
Confidence 57899999987 343333444444 58999999999876622221 1 1 111333333 4689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
+|++-+..... ..++.+.++|+ .+++ |.+++|+....- + -...++++|++
T Consensus 94 iv~~~~plt~~-T~~li~~~~l~----~mk~-ga~lvN~aRG~~----v-------------de~aL~~aL~~ 143 (178)
T PF02826_consen 94 IVSLHLPLTPE-TRGLINAEFLA----KMKP-GAVLVNVARGEL----V-------------DEDALLDALES 143 (178)
T ss_dssp EEEE-SSSSTT-TTTSBSHHHHH----TSTT-TEEEEESSSGGG----B--------------HHHHHHHHHT
T ss_pred hhhhhhccccc-cceeeeeeeee----cccc-ceEEEeccchhh----h-------------hhhHHHHHHhh
Confidence 99986644221 35677888776 4454 556679875543 1 24577778874
No 379
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=82.97 E-value=2.9 Score=33.55 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=44.8
Q ss_pred CEEEEeecccHHH--HHHHHhCCCCEEE-EEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLGGGTAA--HLMLDLWPSLKLE-GWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G~G~~~--~~l~~~~p~~~v~-~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|.+||+|...-. ..+.+..++.++. ++|.+++-.+.+.+.++. . ...|..+.+.. ...|+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~-------------~-~~~~~~~ll~~--~~~D~ 65 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGI-------------P-VYTDLEELLAD--EDVDA 65 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTS-------------E-EESSHHHHHHH--TTESE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcc-------------c-chhHHHHHHHh--hcCCE
Confidence 6889999754322 2344444666665 789999998887777653 2 55676666643 47999
Q ss_pred EEEcC
Q 038076 220 IVVDL 224 (345)
Q Consensus 220 Ii~D~ 224 (345)
|++-.
T Consensus 66 V~I~t 70 (120)
T PF01408_consen 66 VIIAT 70 (120)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99854
No 380
>PLN02494 adenosylhomocysteinase
Probab=82.90 E-value=12 Score=38.47 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
...++|+++|+| -|......++.+ +.+|.++|+||.-...|... +. .+. +..+.+ +..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~~-G~-------------~vv--~leEal----~~A 310 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALME-GY-------------QVL--TLEDVV----SEA 310 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHhc-CC-------------eec--cHHHHH----hhC
Confidence 357899999998 333333333444 57999999999765444332 11 111 111222 357
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+|+... + . .++. .....+.|++||+++ |+...+
T Consensus 311 DVVI~tT--G-t--~~vI----~~e~L~~MK~GAiLi-NvGr~~ 344 (477)
T PLN02494 311 DIFVTTT--G-N--KDII----MVDHMRKMKNNAIVC-NIGHFD 344 (477)
T ss_pred CEEEECC--C-C--ccch----HHHHHhcCCCCCEEE-EcCCCC
Confidence 9988621 1 1 1222 244556788888875 887654
No 381
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.89 E-value=7 Score=37.19 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=56.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+..+||+.|+|+ |..+..+++..+..++.+++.++...+.++++ +... -+.....+..... .....+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~~~---------vi~~~~~~~~~~~-~~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GADE---------TVNLARDPLAAYA-ADKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCCE---------EEcCCchhhhhhh-ccCCCcc
Confidence 567899977654 45555566654323799999999998887774 3211 0100011111221 1234589
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+--. .. ...++.+.+.|+++|.++.
T Consensus 234 ~vld~~-g~---------~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 234 VVFEAS-GA---------PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EEEECC-CC---------HHHHHHHHHHHhcCCEEEE
Confidence 987421 11 2357788899999999874
No 382
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.75 E-value=11 Score=33.12 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCCCCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
...++++++|-| .| ..++.++. -+.+|+++|+||.-.-.|. .. ..++. + +++.-+.
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~--~Ga~V~V~e~DPi~alqA~--~d------------Gf~v~--~----~~~a~~~ 78 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRG--LGARVTVTEIDPIRALQAA--MD------------GFEVM--T----LEEALRD 78 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHH--TT-EEEEE-SSHHHHHHHH--HT------------T-EEE-------HHHHTTT
T ss_pred eCCCEEEEeCCCcccHHHHHHHhh--CCCEEEEEECChHHHHHhh--hc------------CcEec--C----HHHHHhh
Confidence 457899999988 33 44455544 3689999999995443332 21 12222 1 2223356
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.|+|+.--- .....+.|.|+. -++|.++.|+.+.+.
T Consensus 79 adi~vtaTG-----~~~vi~~e~~~~-----mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 79 ADIFVTATG-----NKDVITGEHFRQ-----MKDGAILANAGHFDV 114 (162)
T ss_dssp -SEEEE-SS-----SSSSB-HHHHHH-----S-TTEEEEESSSSTT
T ss_pred CCEEEECCC-----CccccCHHHHHH-----hcCCeEEeccCcCce
Confidence 798886311 223345666654 346788889998775
No 383
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.75 E-value=5.3 Score=39.83 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=56.4
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC---CCCCcEEEEEc-ccccccccCCCc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT---ATGGVLQVHIG-DVFSPSEDASGR 216 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~---~~~~rv~v~~g-Da~~~l~~~~~~ 216 (345)
+|.+||+| |..++..+ .. +.+|+++|+|++.++..++....-. +... ....+.++... |.. ...+.
T Consensus 2 kI~VIGlGyvGl~~A~~l-A~--G~~VigvD~d~~kv~~l~~g~~~~~-e~~l~~~l~~~~~~l~~t~~~~----~~~~~ 73 (388)
T PRK15057 2 KITISGTGYVGLSNGLLI-AQ--NHEVVALDILPSRVAMLNDRISPIV-DKEIQQFLQSDKIHFNATLDKN----EAYRD 73 (388)
T ss_pred EEEEECCCHHHHHHHHHH-Hh--CCcEEEEECCHHHHHHHHcCCCCCC-CcCHHHHHHhCCCcEEEecchh----hhhcC
Confidence 58899998 33455333 32 5789999999999998876432110 0000 00011111111 000 11256
Q ss_pred ccEEEEcCCCCCCCC---CCc-chHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 217 YAGIVVDLFSEGKVL---PQL-EEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p---~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-|+||+.+..+.... ..+ +-.+.++.+.+ +++| .++++..+...
T Consensus 74 ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g-~lVV~~STv~p 121 (388)
T PRK15057 74 ADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPY-AVMVIKSTVPV 121 (388)
T ss_pred CCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCC-CEEEEeeecCC
Confidence 799998776642211 111 22345566666 6665 45555554444
No 384
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=82.74 E-value=1.9 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=33.1
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVR 181 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~ 181 (345)
....+|..||.||..+.-++.+. | .+|++|||+|.-+.+.+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~-P-a~id~VDlN~ahiAln~ 102 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRA-P-ARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcC-C-ceeEEEeCCHHHHHHHH
Confidence 34678999999998777777653 4 79999999999988755
No 385
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=82.64 E-value=6.1 Score=37.52 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=57.7
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~ 216 (345)
.+..+||+.|+| -|..+..+++...+.+|+++.-+++-.+.+++ ++.... +.... .+..+.+....+.
T Consensus 161 ~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~~~v---------~~~~~~~~~~~~v~~~~~~ 230 (338)
T PRK09422 161 KPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGADLT---------INSKRVEDVAKIIQEKTGG 230 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCCcEE---------ecccccccHHHHHHHhcCC
Confidence 456789999953 23344444454336789999999999999965 453210 11000 1111222222235
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|.++.+... .+.++.+.+.|+++|.++.
T Consensus 231 ~d~vi~~~~~----------~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 231 AHAAVVTAVA----------KAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred CcEEEEeCCC----------HHHHHHHHHhccCCCEEEE
Confidence 8877665322 3567888899999999874
No 386
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=82.45 E-value=4.1 Score=31.41 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=51.0
Q ss_pred CEEEEeec--ccHHHHHHHHhC-CCCEEEEE-ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLW-PSLKLEGW-EIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~-p~~~v~~V-Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+||+| +..+++.+.+.. +..+|..+ +.+|+-.+...+.++ +.+...|..+.+ +..|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------------~~~~~~~~~~~~----~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------------VQATADDNEEAA----QEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------------TEEESEEHHHHH----HHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------------cccccCChHHhh----ccCC
Confidence 46778766 344555554431 23788855 999998887777664 223322433333 3689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+||+-+ ++. .-.+.+..+ ..+.++.+++
T Consensus 64 vvilav------~p~-~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 64 VVILAV------KPQ-QLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EEEE-S-------GG-GHHHHHHHH-HHHHTTSEEE
T ss_pred EEEEEE------CHH-HHHHHHHHH-hhccCCCEEE
Confidence 999843 222 335677777 6666666654
No 387
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.41 E-value=9.4 Score=36.46 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=59.9
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc-cccccccc-CC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG-DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g-Da~~~l~~-~~ 214 (345)
.+..+||+.|+ |-|..+.++++.. +.+|.++..+++-.+.+++.++... -+..... |..+.+.. .+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~lGa~~---------vi~~~~~~~~~~~i~~~~~ 219 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKLGFDD---------AFNYKEEPDLDAALKRYFP 219 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhcCCce---------eEEcCCcccHHHHHHHhCC
Confidence 45678999986 4556666667654 5789999999999888887555321 0110011 22121211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+|+|+ |... ...+..+.+.|+++|.++.
T Consensus 220 ~gvd~v~-d~~g----------~~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 220 NGIDIYF-DNVG----------GKMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred CCcEEEE-ECCC----------HHHHHHHHHHhccCcEEEE
Confidence 5789887 4322 1356778899999999874
No 388
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=82.12 E-value=22 Score=29.64 Aligned_cols=74 Identities=15% Similarity=0.073 Sum_probs=42.7
Q ss_pred CCCCCEEEEeecc--cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGG--GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~--G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.++++++++|+|. ..+++.+.+. ...+|++++.+++-.+...+.++.. .+.....|..+ .-+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~-g~~~v~v~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~~----~~~~ 81 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAEL-GAAKIVIVNRTLEKAKALAERFGEL----------GIAIAYLDLEE----LLAE 81 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhc----------ccceeecchhh----cccc
Confidence 3468899999862 3444444432 2468999999988766544444311 01111122222 1367
Q ss_pred ccEEEEcCCCC
Q 038076 217 YAGIVVDLFSE 227 (345)
Q Consensus 217 yD~Ii~D~f~~ 227 (345)
.|+|++-....
T Consensus 82 ~Dvvi~~~~~~ 92 (155)
T cd01065 82 ADLIINTTPVG 92 (155)
T ss_pred CCEEEeCcCCC
Confidence 99999866554
No 389
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.09 E-value=11 Score=37.67 Aligned_cols=72 Identities=11% Similarity=0.048 Sum_probs=47.7
Q ss_pred CCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCCCccc
Q 038076 142 GPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDASGRYA 218 (345)
Q Consensus 142 ~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~~~yD 218 (345)
++||+||+| -|+.+.+.+....+.+|++.|-+++-.+.+....+ ++++.+.=|+.+. +...=+.+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----------~~v~~~~vD~~d~~al~~li~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----------GKVEALQVDAADVDALVALIKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----------ccceeEEecccChHHHHHHHhcCC
Confidence 589999996 34444444444455899999999888887766542 3677777777664 112224559
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
++|.-+
T Consensus 71 ~VIn~~ 76 (389)
T COG1748 71 LVINAA 76 (389)
T ss_pred EEEEeC
Confidence 888643
No 390
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.93 E-value=9.3 Score=35.62 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=53.8
Q ss_pred hHHHHHhhccc-----cC-CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE
Q 038076 127 SYWDEFVSLPA-----IV-PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ 200 (345)
Q Consensus 127 ~Y~~~~~~l~~-----~~-~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~ 200 (345)
.|.+.+.-+.. .. +.-++|+||.|+..+=-.+-.+-=+.+.++-|||+.-++.|+-.....+. ....++
T Consensus 59 dYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~-----l~~~I~ 133 (292)
T COG3129 59 DYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG-----LERAIR 133 (292)
T ss_pred HHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc-----hhhhee
Confidence 46665543332 11 34568888888765422222221147999999999999999877643320 123344
Q ss_pred EEEc-ccccccc---cCCCcccEEEEcC
Q 038076 201 VHIG-DVFSPSE---DASGRYAGIVVDL 224 (345)
Q Consensus 201 v~~g-Da~~~l~---~~~~~yD~Ii~D~ 224 (345)
+... |-...+. ...++||..+|..
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNP 161 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNP 161 (292)
T ss_pred EEeccCccccccccccccceeeeEecCC
Confidence 4433 2222222 2478999999853
No 391
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=81.80 E-value=14 Score=34.76 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|.+||+| |+.++..+.+ .+.+|.++|.+++.++.+.+. + +. ...|..+. -+..|+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~--~g~~v~~~d~~~~~~~~~~~~-g-------------~~-~~~~~~e~----~~~~d~ 61 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK--AGYSLVVYDRNPEAVAEVIAA-G-------------AE-TASTAKAV----AEQCDV 61 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH--CCCeEEEEcCCHHHHHHHHHC-C-------------Ce-ecCCHHHH----HhcCCE
Confidence 369999998 3566777665 357899999999887765442 1 11 11222222 246799
Q ss_pred EEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+-+.... ...+.+ +.+...+++ |.+++|+.+...
T Consensus 62 vi~~vp~~~------~~~~v~~~~~~~~~~~~~-g~iiid~st~~~ 100 (296)
T PRK11559 62 IITMLPNSP------HVKEVALGENGIIEGAKP-GTVVIDMSSIAP 100 (296)
T ss_pred EEEeCCCHH------HHHHHHcCcchHhhcCCC-CcEEEECCCCCH
Confidence 998654321 122222 235556655 555568876654
No 392
>PLN02827 Alcohol dehydrogenase-like
Probab=81.74 E-value=5.6 Score=39.07 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=56.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
.+..+||+.|+| -|.++.++++......|.+++.+++-.+.|+++ +... -+.... .|..+.+.. ..
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l-Ga~~---------~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF-GVTD---------FINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCcE---------EEcccccchHHHHHHHHHhC
Confidence 456789999864 334444555555434689999999999998764 4321 011111 122222221 22
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+- .-.. ...+..+.+.|+++ |.+++
T Consensus 262 ~g~d~vid-~~G~---------~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSFE-CVGD---------TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEEE-CCCC---------hHHHHHHHHhhccCCCEEEE
Confidence 36898873 2221 23566777889998 99875
No 393
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.66 E-value=11 Score=37.75 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=45.0
Q ss_pred CEEEEeecccHHHHHHHHh--CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--ccc-CCCcc
Q 038076 143 PIAIYGLGGGTAAHLMLDL--WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SED-ASGRY 217 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~--~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~-~~~~y 217 (345)
+|+++|+| .+++.+.+. ..+.+++++|.|++-++.+++.+ .++++.+|+.+. +.. .-+.+
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------------~~~~~~gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------------DVRTVVGNGSSPDVLREAGAEDA 66 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------------CEEEEEeCCCCHHHHHHcCCCcC
Confidence 68888875 444444432 13578999999999888766533 267888998753 222 24679
Q ss_pred cEEEEcC
Q 038076 218 AGIVVDL 224 (345)
Q Consensus 218 D~Ii~D~ 224 (345)
|.|++-.
T Consensus 67 ~~vi~~~ 73 (453)
T PRK09496 67 DLLIAVT 73 (453)
T ss_pred CEEEEec
Confidence 9888744
No 394
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.31 E-value=4.9 Score=39.32 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=23.6
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECCH
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEidp 174 (345)
...+|+++|+|+ |+ ++..|.+ ..-.+++.||-|.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 467899999983 43 4444443 3446999999885
No 395
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=81.21 E-value=11 Score=35.22 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---cccccccccCCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~~~~~ 216 (345)
.+.+||++|.|+|..+.... .....++..-|+-..+..+... -.... .........+.+.. +++... ......
T Consensus 86 ~~~~vlELGsGtglvG~~aa-~~~~~~v~ltD~~~~~~~L~~~-~~~~~-~~l~~~g~~v~v~~L~Wg~~~~~-~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAA-LLLGAEVVLTDLPKVVENLKFN-RDKNN-IALNQLGGSVIVAILVWGNALDV-SFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHH-HHhcceeccCCchhhHHHHHHh-hhhhh-hhhhhcCCceeEEEEecCCcccH-hhccCC
Confidence 46689999999995554444 4456777777775555444322 11000 00000011222211 222221 122233
Q ss_pred -ccEEEE-cCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 -YAGIVV-DLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 -yD~Ii~-D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+. |.+-....+. .....++..|..+|++.+
T Consensus 162 ~~DlilasDvvy~~~~~e-----~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFE-----GLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEEeeeeecCCcch-----hHHHHHHHHHhcCCeEEE
Confidence 999985 5543333222 245567777888884433
No 396
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=80.65 E-value=18 Score=37.10 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=60.3
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
.|-+||+| |+.+++.+++. +.+|.+.+.+++.++...+.... +..+.. ..+..++.+. -++.|+|
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~---------g~~~~~-~~s~~e~v~~-l~~~dvI 67 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK---------GKKIVG-AYSIEEFVQS-LERPRKI 67 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC---------CCCcee-cCCHHHHHhh-cCCCCEE
Confidence 36788988 66777777653 57899999999998876653210 001111 1233333221 2456888
Q ss_pred EEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
++-+..+ -...+.++.+...|++|- +++++.+...
T Consensus 68 il~v~~~------~~v~~Vi~~l~~~L~~g~-iIID~gns~~ 102 (467)
T TIGR00873 68 MLMVKAG------APVDAVINQLLPLLEKGD-IIIDGGNSHY 102 (467)
T ss_pred EEECCCc------HHHHHHHHHHHhhCCCCC-EEEECCCcCH
Confidence 8754332 234567778888887764 5567776553
No 397
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=80.44 E-value=1.5 Score=44.09 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=55.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCc-EEEEEcccccccccC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGV-LQVHIGDVFSPSEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~r-v~v~~gDa~~~l~~~ 213 (345)
.++.-|.++-||.|-.+.-+... +++|++-|++|++++.-+...++... ++. ++++..||..|+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lNkv------~~~~iei~Nmda~~Flr~e 315 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLNKV------DPSAIEIFNMDAKDFLRQE 315 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccccc------chhheeeecccHHHHhhcC
Confidence 56677888999999887766653 59999999999999999998887653 455 999999999999643
No 398
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=80.34 E-value=9.8 Score=37.78 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=59.8
Q ss_pred CCCCEEEEee--cccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE----cccccccc
Q 038076 140 PNGPIAIYGL--GGGTAAHLMLDLWP--SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI----GDVFSPSE 211 (345)
Q Consensus 140 ~p~~VLiIG~--G~G~~~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~----gDa~~~l~ 211 (345)
+..+|+++|+ |-|..+.++++... ..+|.++|.+++-.+.+++.++..... .+....++. .|..+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~----~Ga~~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS----RGIELLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc----cCceEEEECCCccccHHHHHH
Confidence 4468999984 35566666666542 247999999999999999975421000 000111221 12222222
Q ss_pred c--CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 212 D--ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 212 ~--~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
. ....+|+|+..... ...+....+.++++|.+++.
T Consensus 251 ~~t~g~g~D~vid~~g~----------~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 251 ELTGGQGFDDVFVFVPV----------PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHhCCCCCCEEEEcCCC----------HHHHHHHHHHhccCCeEEEE
Confidence 1 23469988863211 24677778899988866543
No 399
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=80.26 E-value=2.2 Score=40.59 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~yD 218 (345)
..++|+++|=-.=+.....+...| .+|.+||||+.+++.-.+...--. -.+++.+.=|.|+-+.. ..++||
T Consensus 152 ~gK~I~vvGDDDLtsia~aLt~mp-k~iaVvDIDERli~fi~k~aee~g-------~~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVGDDDLTSIALALTGMP-KRIAVVDIDERLIKFIEKVAEELG-------YNNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred CCCeEEEEcCchhhHHHHHhcCCC-ceEEEEechHHHHHHHHHHHHHhC-------ccchhheeehhcccChHHHHhhCC
Confidence 467899999443322222232333 799999999999987666543111 23577788898887644 468999
Q ss_pred EEEEcC
Q 038076 219 GIVVDL 224 (345)
Q Consensus 219 ~Ii~D~ 224 (345)
+++-|.
T Consensus 224 vfiTDP 229 (354)
T COG1568 224 VFITDP 229 (354)
T ss_pred eeecCc
Confidence 999873
No 400
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.26 E-value=13 Score=35.76 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=52.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-hcCCCCCCCC--CCCCCcEEEEEcccccccccCCCc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD-YFGLSDLEKP--TATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~-~f~~~~~~~~--~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+|.+||+| |+.++..+.+. +.+|++++.++.. +..++ .+........ .....+++. ..|. ...+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~ 73 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAF-STDP-----AALAT 73 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEe-ccCh-----hhccC
Confidence 479999999 55666666653 5689999987754 33333 1111110000 000001111 1111 12357
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
+|+|++-+... ...+.++.+...++++-+++
T Consensus 74 ~D~vil~vk~~-------~~~~~~~~l~~~~~~~~iii 104 (341)
T PRK08229 74 ADLVLVTVKSA-------ATADAAAALAGHARPGAVVV 104 (341)
T ss_pred CCEEEEEecCc-------chHHHHHHHHhhCCCCCEEE
Confidence 99999855321 23577888888887776543
No 401
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=80.26 E-value=5.2 Score=36.36 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECC
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEID 173 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEid 173 (345)
...+|+++|+|+ |+ ++..|. ..+-.+++.+|-|
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence 468999999983 44 444444 4455689999998
No 402
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=80.22 E-value=9.6 Score=37.13 Aligned_cols=91 Identities=22% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILI-DKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi-~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~ 216 (345)
+..+||+.|+| -|..+.++++.. +.++.+++.+++-. +.+++ ++... ++. .+. +-+......
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~-~Ga~~------------vi~~~~~-~~~~~~~~~ 247 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINR-LGADS------------FLVSTDP-EKMKAAIGT 247 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHh-CCCcE------------EEcCCCH-HHHHhhcCC
Confidence 45688887764 344555555554 56788888776543 34333 44321 110 010 011111125
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+ |... ....++.+.+.|+++|.++.
T Consensus 248 ~D~vi-d~~g---------~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 248 MDYII-DTVS---------AVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred CCEEE-ECCC---------CHHHHHHHHHHhcCCcEEEE
Confidence 89887 4322 12357778889999999874
No 403
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.19 E-value=14 Score=37.47 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
..++|+++|+|. |......++.. +.+|+++|+||.-...+... +. ++. +..+. -+..|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~~-G~-------------~v~--~l~ea----l~~aD 269 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAMD-GF-------------RVM--TMEEA----AELGD 269 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHhc-CC-------------Eec--CHHHH----HhCCC
Confidence 578899999983 33333333433 56999999999776554432 21 111 11122 23689
Q ss_pred EEEEcCCCCCCCCCCcchHHHHH-HHHhccCCCcEEEEEecCCCC
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWL-KLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~-~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+||.-. . +...+. ...+.+++|+++ +|....+.
T Consensus 270 VVI~aT-G---------~~~vI~~~~~~~mK~Gail-iNvG~~d~ 303 (425)
T PRK05476 270 IFVTAT-G---------NKDVITAEHMEAMKDGAIL-ANIGHFDN 303 (425)
T ss_pred EEEECC-C---------CHHHHHHHHHhcCCCCCEE-EEcCCCCC
Confidence 887521 1 123444 455677887765 57776654
No 404
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=80.16 E-value=8 Score=35.15 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=64.4
Q ss_pred CCCCCEEEEeecccHHHHHHHHhC-CCCEEEEEECCHH----------HHHHHHHhcCCCCCCCCCCCCCcEEEEEcccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLW-PSLKLEGWEIDEI----------LIDKVRDYFGLSDLEKPTATGGVLQVHIGDVF 207 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~-p~~~v~~VEidp~----------vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~ 207 (345)
.+...|.++=-|+|..++.+..+. |...|+.+-.++. +-.++++-. ..+++++-.+-.
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----------~aN~e~~~~~~~ 115 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----------YANVEVIGKPLV 115 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----------hhhhhhhCCccc
Confidence 456789999999999999888653 4456766654332 111111111 123344433333
Q ss_pred cccccCCCcccEEEEcCCCCC---CCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEG---KVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~---~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.+. ..+..|++....+... .....-+...++..+.+.|||||++.+--+....
T Consensus 116 A~~--~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 116 ALG--APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred ccC--CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 332 4566676664222211 1111234567899999999999999887655544
No 405
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=79.83 E-value=9.8 Score=36.37 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=55.9
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc----ccccccc-
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD----VFSPSED- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD----a~~~l~~- 212 (345)
.+..+||+.|+|+ |..+..+++..+...|.+++-+++-.+.+++. +... -+.....+ .....+.
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~~---------vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GATH---------TVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCcE---------EeccccccchhHHHHHHHHh
Confidence 4567898876543 44555556654433489999988888888663 3221 01111112 1111111
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+--. . ....++...+.|+++|.++.
T Consensus 231 ~~~~~d~vld~~-g---------~~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 231 GGKGPDVVIECT-G---------AESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCCCEEEECC-C---------CHHHHHHHHHHhhcCCEEEE
Confidence 245699988421 1 12367778899999999874
No 406
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.76 E-value=11 Score=35.55 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=57.5
Q ss_pred CCEEEEeec--ccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+|..||+| ++.+++.+.+.. +..+|.+.+.+++-.+.+.+.++ ++. ..|..+.+ +.-
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g-------------~~~-~~~~~e~~----~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG-------------ITI-TTNNNEVA----NSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC-------------cEE-eCCcHHHH----hhC
Confidence 468999999 777888777642 34579999999987776554333 221 22333322 356
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+||+-+. + -...+.++.++..++++ .+++.+-..-
T Consensus 65 DiIiLavk------P-~~~~~vl~~l~~~~~~~-~lvISi~AGi 100 (272)
T PRK12491 65 DILILSIK------P-DLYSSVINQIKDQIKND-VIVVTIAAGK 100 (272)
T ss_pred CEEEEEeC------h-HHHHHHHHHHHHhhcCC-cEEEEeCCCC
Confidence 99998542 2 13345667777777665 4555555433
No 407
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.73 E-value=18 Score=34.65 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=56.2
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---cC-CCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY---FG-LSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~---f~-~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+|.+||+| |+.++..|.+. +.+|+.++.+++.++.-++. .. ++.. ...++++.. .|..+- ..+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~----~~~~~i~~~-~~~~~~---~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTC----HLPDNISVK-SAIDEV---LSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCC----cCCCCeEEe-CCHHHH---HhCC
Confidence 58899988 44566565543 56899999999877765542 11 1110 001123322 222211 1257
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvv 255 (345)
.|+||+-+.+ ....+.++.++. .++++..++.
T Consensus 72 ~Dliiiavks-------~~~~~~l~~l~~~~l~~~~~vv~ 104 (326)
T PRK14620 72 ATCIILAVPT-------QQLRTICQQLQDCHLKKNTPILI 104 (326)
T ss_pred CCEEEEEeCH-------HHHHHHHHHHHHhcCCCCCEEEE
Confidence 8999984422 245778888887 8888876544
No 408
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=79.67 E-value=3.3 Score=40.79 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCCCEEEEeecccHHHHHHHHh----CC----CCEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDL----WP----SLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~----~p----~~~v~~VEidp~vi~~A~~~f~ 185 (345)
.|..+++||.|.|.+..-+++. +| ..++..||++|+..+.=++.+.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~ 130 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLK 130 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHh
Confidence 4568999999999999877753 44 4899999999999998777664
No 409
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=79.64 E-value=9.5 Score=38.44 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=55.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+.++|+++|+|. |......++.. +.+|+++|+||.-.+.|++. +.. .. +..+.+ +..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~-G~~-------------~~--~~~e~v----~~a 258 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME-GYE-------------VM--TMEEAV----KEG 258 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc-CCE-------------Ec--cHHHHH----cCC
Confidence 3578999999994 44444444444 46899999999998888763 321 11 111222 357
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHH-HHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLK-LKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~-~~~~L~pgGvlvvn~~~~~ 261 (345)
|+||.-. . +...+.. ..+.+++||+++ |+...+
T Consensus 259 DVVI~at-G---------~~~~i~~~~l~~mk~Ggilv-nvG~~~ 292 (413)
T cd00401 259 DIFVTTT-G---------NKDIITGEHFEQMKDGAIVC-NIGHFD 292 (413)
T ss_pred CEEEECC-C---------CHHHHHHHHHhcCCCCcEEE-EeCCCC
Confidence 9888521 1 1234444 367889988764 666443
No 410
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=79.47 E-value=5.3 Score=40.30 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=59.8
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCC---C-CCCcEEEEEcccccccccC
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPT---A-TGGVLQVHIGDVFSPSEDA 213 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~---~-~~~rv~v~~gDa~~~l~~~ 213 (345)
++.+|-+||+| |..++..+.+ +.+|+++|+|++.++..++ +..+..+.. . ...++..- .|. + .
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~--G~~~~~e~~~~~l~~~g~l~~t-~~~-~----~ 73 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKN--GVDVNLETTEEELREARYLKFT-SEI-E----K 73 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHC--cCCCCCCCCHHHHHhhCCeeEE-eCH-H----H
Confidence 45789999999 4555555443 3789999999999998763 211100000 0 00111111 111 1 1
Q ss_pred CCcccEEEEcCCCCCCC--CCCcch-HHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 214 SGRYAGIVVDLFSEGKV--LPQLEE-VATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~--p~~l~t-~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
-+.-|+||+-+.++... .+.+.. ....+.+.+.|++|-++ +...+...
T Consensus 74 ~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lV-I~~STv~p 124 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIV-VYESTVYP 124 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEE-EEecCCCC
Confidence 35789999877665321 122222 22345677888876554 45444443
No 411
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=79.23 E-value=3.2 Score=36.84 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=33.7
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRD 182 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~ 182 (345)
.+..-||+-=+|+|+++.+..+. +-+..++|+||+.+++|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 35567999999999999988875 5689999999999999975
No 412
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=79.22 E-value=15 Score=34.63 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=52.1
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |..++..+.+. +.+|+++|.+++.++.+.+. +.. ...+..+. -+..|+|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~-g~~--------------~~~~~~~~----~~~aDiv 59 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA-GAV--------------TAETARQV----TEQADVI 59 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-CCc--------------ccCCHHHH----HhcCCEE
Confidence 47889988 44566666653 57899999999887765542 110 01122222 2467999
Q ss_pred EEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+-+.+. ....+.+ ..+...+++ |.+++|+.+...
T Consensus 60 i~~vp~~------~~~~~v~~~~~~~~~~~~~-g~iivd~st~~~ 97 (291)
T TIGR01505 60 FTMVPDS------PQVEEVAFGENGIIEGAKP-GKTLVDMSSISP 97 (291)
T ss_pred EEecCCH------HHHHHHHcCcchHhhcCCC-CCEEEECCCCCH
Confidence 9865432 1122222 224455655 555668765554
No 413
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.94 E-value=7.6 Score=40.14 Aligned_cols=110 Identities=14% Similarity=0.075 Sum_probs=66.0
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCCCC-----CCCCcEEEEEcccc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG-----LSDLEKPT-----ATGGVLQVHIGDVF 207 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-----~~~~~~~~-----~~~~rv~v~~gDa~ 207 (345)
+.++|.+||+| |..++..+++ .+.+|+++|.+++.++.++++.. +....... ..-.|++.. .|..
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~--aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAAS--AGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV-TDLH 80 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe-CCHH
Confidence 45789999998 4455555554 36899999999999987643321 00000000 001233322 2221
Q ss_pred cccccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 208 SPSEDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 208 ~~l~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
. -..-|+||--++... -...++|..+.+.++|+-+++.|..+.+.
T Consensus 81 ~-----l~~aDlVIEav~E~~-----~vK~~vf~~l~~~~~~~~IlasnTStl~i 125 (503)
T TIGR02279 81 A-----LADAGLVIEAIVENL-----EVKKALFAQLEELCPADTIIASNTSSLSI 125 (503)
T ss_pred H-----hCCCCEEEEcCcCcH-----HHHHHHHHHHHhhCCCCeEEEECCCCCCH
Confidence 1 136899997554432 14567788888888998888888876654
No 414
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=78.50 E-value=11 Score=36.26 Aligned_cols=97 Identities=22% Similarity=0.122 Sum_probs=55.9
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+| .|..+.++++.....+|.+++-+++-.+.++++ +... -+.....|..+.+.. ..+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga~~---------~i~~~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GATI---------VLDPTEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCE---------EECCCccCHHHHHHHHhCCC
Confidence 456789999753 233444445544323899999999999998774 4321 111111222222211 234
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+--. . ..+.++.+.+.|+++|.++.
T Consensus 241 ~~d~vid~~-g---------~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 241 GVDVSFDCA-G---------VQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCCEEEECC-C---------CHHHHHHHHHhccCCCEEEE
Confidence 599988421 1 12356778889999998764
No 415
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=78.40 E-value=23 Score=35.32 Aligned_cols=110 Identities=22% Similarity=0.175 Sum_probs=58.8
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCC--------CCCcEEEEEccccccccc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTA--------TGGVLQVHIGDVFSPSED 212 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~--------~~~rv~v~~gDa~~~l~~ 212 (345)
+|.+||+| |..++..+.+ .+.+|+++|+|++.++..++- ..+...... ...+++.. .|..+
T Consensus 2 kI~vIGlG~~G~~lA~~La~--~G~~V~~~d~~~~~v~~l~~g--~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~---- 72 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD--LGHEVTGVDIDQEKVDKLNKG--KSPIYEPGLDELLAKALAAGRLRAT-TDYED---- 72 (411)
T ss_pred EEEEECCCchhHHHHHHHHh--cCCeEEEEECCHHHHHHhhcC--CCCCCCCCHHHHHHHhhhcCCeEEE-CCHHH----
Confidence 68899999 5566666654 356899999999988765431 111000000 01223221 12111
Q ss_pred CCCcccEEEEcCCCCCCC---CCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 213 ASGRYAGIVVDLFSEGKV---LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~---p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
.-+..|+||+-+.++... +.--+-.+..+.+.+.|++|- ++++..+.+.
T Consensus 73 ~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~-lvi~~STv~p 124 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGA-TVVLESTVPP 124 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCC-EEEEeCcCCC
Confidence 125689999877664321 111122344566777777654 5556654443
No 416
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=78.13 E-value=7.4 Score=36.17 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=39.8
Q ss_pred CCEEEEeec-ccH-HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG-GGT-AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G-~G~-~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+++|++|+= +|. ++..|.+. .+|++|||.|.+.++- ++++++. .++...+..||+
T Consensus 43 k~~lI~G~YltG~~iA~~L~~~---~eV~lvDI~p~lk~ll---------------~~~i~F~-----~~~~~~~~~~Dl 99 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALSKK---CEVTLVDIHPHLKELL---------------NENIKFM-----EFRNGLEGNPDL 99 (252)
T ss_pred ceEEEEEEEeehHHHHHHhccC---ceEEEEeCcHHHHHHh---------------cCCCcee-----eccCCCCCCCCE
Confidence 589999963 443 44444332 3999999999998874 1334444 444445678999
Q ss_pred EEEcCCC
Q 038076 220 IVVDLFS 226 (345)
Q Consensus 220 Ii~D~f~ 226 (345)
|+ |...
T Consensus 100 II-D~TG 105 (252)
T PF06690_consen 100 II-DTTG 105 (252)
T ss_pred EE-ECCC
Confidence 87 5543
No 417
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=78.07 E-value=2.4 Score=40.48 Aligned_cols=41 Identities=15% Similarity=0.078 Sum_probs=27.2
Q ss_pred CCCCCEEEEee-ccc--HHHHHHHHhC--CCCEEEEEECCHHHHHH
Q 038076 139 VPNGPIAIYGL-GGG--TAAHLMLDLW--PSLKLEGWEIDEILIDK 179 (345)
Q Consensus 139 ~~p~~VLiIG~-G~G--~~~~~l~~~~--p~~~v~~VEidp~vi~~ 179 (345)
..|.-++++|. |+| ++...|..+. ......+|-+||+|.++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 45677999994 666 3333333321 23568999999999874
No 418
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=77.95 E-value=17 Score=35.25 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=56.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc--cccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG--DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g--Da~~~l~~-~~ 214 (345)
.+..+||+.|+| .|..+..+++..+...|.+++.+++-.+.+++ ++.... +..... |..+.+.. .+
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~~~---------v~~~~~~~~~~~~l~~~~~ 251 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGATEC---------INPRDQDKPIVEVLTEMTD 251 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCCee---------cccccccchHHHHHHHHhC
Confidence 456789998754 23344445555544468899999999998865 553221 111111 21121211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccC-CCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLM-PNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~-pgGvlvv 255 (345)
+.+|+|+ |.... ...+..+.+.|+ ++|.++.
T Consensus 252 ~~~d~vi-d~~g~---------~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAF-EVIGS---------ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEE-ECCCC---------HHHHHHHHHHhccCCCEEEE
Confidence 5699888 43211 245677788899 9999874
No 419
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=77.82 E-value=10 Score=40.40 Aligned_cols=158 Identities=13% Similarity=-0.005 Sum_probs=83.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEE---EEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcc--------ccc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLE---GWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGD--------VFS 208 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~---~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gD--------a~~ 208 (345)
+++..|+.|=|+|.++..+++.+|..++. -.|+|..+.+=+.-. |+..-....+.+-+++..| -.+
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~---PPsAi~~~g~~~~Rcvn~~~~W~~pSDLs~ 398 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPS---PPSAIMALGNDKSRCVNLDTCWEHPSDLSD 398 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCC---CcHHHhccCcccceeecchhhhcCccccCC
Confidence 45778999999999999999999986553 344444433321110 0000000111233333322 111
Q ss_pred -----cc----ccCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccch
Q 038076 209 -----PS----EDASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDV 279 (345)
Q Consensus 209 -----~l----~~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~ 279 (345)
|. ++.+-++|+|++|.--.+.-.......-.-+.+.+.|.++|++++=.....--
T Consensus 399 ~~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~---------------- 462 (675)
T PF14314_consen 399 PETWKYFVSLKKQHNLSIDLIVMDMEVRDDSIIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLL---------------- 462 (675)
T ss_pred ccHHHHHHHHHhhcCCcccEEEEeceecChHHHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhh----------------
Confidence 11 11356899999997432211000111122233456789999999876544320
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEec--C-CCCceEEEEeCCC
Q 038076 280 WMHNSAIRALSEAFPGKVSWKRMP--E-RNGENFLALTGLL 317 (345)
Q Consensus 280 ~~~~~~~~~l~~~F~~~v~~~~~~--~-~~~~n~v~~a~~~ 317 (345)
.....++..+.+.|+ .|....-. . ...+..+++....
T Consensus 463 ~~~~~il~~lg~~F~-~V~l~qT~~SSs~TSEVYlv~~~~~ 502 (675)
T PF14314_consen 463 SPDYNILDLLGRYFK-SVELVQTQFSSSFTSEVYLVFQKLK 502 (675)
T ss_pred cchhhHHHHHHhhcC-ceEEEECCCCCCCceEEEEEEeccc
Confidence 123368889999999 67654432 1 2234455554433
No 420
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=77.80 E-value=10 Score=38.31 Aligned_cols=109 Identities=20% Similarity=0.285 Sum_probs=59.0
Q ss_pred CEEEEeecccHHHHHHHH-------hCCCCEEEEEECCHHHHHH----HHHhcCCCCCCCCCCCCCcEEEEE-ccccccc
Q 038076 143 PIAIYGLGGGTAAHLMLD-------LWPSLKLEGWEIDEILIDK----VRDYFGLSDLEKPTATGGVLQVHI-GDVFSPS 210 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~-------~~p~~~v~~VEidp~vi~~----A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l 210 (345)
+|.+||+|+. .+..+.+ ..+..+|.-+|||++-.+. +++.+... ++.+++.. .|-++-+
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~--------g~~~~v~~ttD~~~Al 72 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV--------GADIKFEKTMDLEDAI 72 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh--------CCCeEEEEeCCHHHHh
Confidence 6889999986 4443332 2456899999999976654 56655321 22233322 2333322
Q ss_pred cc---------------------CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhc---cCCCcEEEEEecCCC
Q 038076 211 ED---------------------ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDR---LMPNGRFMVNCGGID 261 (345)
Q Consensus 211 ~~---------------------~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~---L~pgGvlvvn~~~~~ 261 (345)
+. .+.+|.++=-|-..++++...+.+...+..+.+. +.|+++++ |+.++.
T Consensus 73 ~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~li-n~TNP~ 146 (425)
T cd05197 73 IDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYL-NFTNPA 146 (425)
T ss_pred CCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEE-ecCChH
Confidence 11 1224555444433333344445566666555444 57888775 655543
No 421
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=77.64 E-value=12 Score=35.69 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=54.5
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGI 220 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~I 220 (345)
+|.+||+| |+.++..+.+. +.+|+++|.+++-.+...+. +. + ...+..+. -+.-|+|
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-g~-------------~-~~~s~~~~----~~~aDvV 61 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-GA-------------T-PAASPAQA----AAGAEFV 61 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-CC-------------c-ccCCHHHH----HhcCCEE
Confidence 68899998 56777777653 46899999999987765442 11 1 11122121 2456999
Q ss_pred EEcCCCCCCCCCCcchHHHHH---HHHhccCCCcEEEEEecCCCC
Q 038076 221 VVDLFSEGKVLPQLEEVATWL---KLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 221 i~D~f~~~~~p~~l~t~ef~~---~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+-+.+.. ...+.+. .+...++ .|.+++|+.+...
T Consensus 62 i~~vp~~~------~~~~vl~~~~~i~~~l~-~g~lvid~sT~~p 99 (296)
T PRK15461 62 ITMLPNGD------LVRSVLFGENGVCEGLS-RDALVIDMSTIHP 99 (296)
T ss_pred EEecCCHH------HHHHHHcCcccHhhcCC-CCCEEEECCCCCH
Confidence 98664431 1122222 2334454 4667788887765
No 422
>PRK10083 putative oxidoreductase; Provisional
Probab=77.39 E-value=12 Score=35.52 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=53.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDL-WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~-~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..+|++.|+| -|..+..+++. .+...+.+++.+++-.++++++ +.... +.....+..+.+......
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~-Ga~~~---------i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES-GADWV---------INNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh-CCcEE---------ecCccccHHHHHhcCCCC
Confidence 356789999853 22233334443 3444688899999999998874 43210 111111222222222223
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|+|+ |.... .+.+....+.|+++|.++.
T Consensus 229 ~d~vi-d~~g~---------~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 229 PTLII-DAACH---------PSILEEAVTLASPAARIVL 257 (339)
T ss_pred CCEEE-ECCCC---------HHHHHHHHHHhhcCCEEEE
Confidence 45555 43221 2457778889999999874
No 423
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=77.35 E-value=18 Score=32.62 Aligned_cols=92 Identities=13% Similarity=-0.015 Sum_probs=52.2
Q ss_pred CCCCEEEEeeccc--HHHHHHHHhCCCCEEEEEECC--HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 140 PNGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEID--EILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
..++||++|+|.= .-++.|++ -+.+|++|+.+ +++.+++++ .+++++.++... ..-.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~~~l~~l~~~--------------~~i~~~~~~~~~---~dl~ 68 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELESELTLLAEQ--------------GGITWLARCFDA---DILE 68 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHHc--------------CCEEEEeCCCCH---HHhC
Confidence 4679999998843 23445554 35788888554 455554322 357777776442 2235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.+|+||....+. -.....+..++ ..|+++ |+.+..
T Consensus 69 ~~~lVi~at~d~------~ln~~i~~~a~----~~~ilv-n~~d~~ 103 (205)
T TIGR01470 69 GAFLVIAATDDE------ELNRRVAHAAR----ARGVPV-NVVDDP 103 (205)
T ss_pred CcEEEEECCCCH------HHHHHHHHHHH----HcCCEE-EECCCc
Confidence 789988742221 12334444444 457665 655444
No 424
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.29 E-value=41 Score=32.73 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=55.6
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhc-CCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYF-GLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f-~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.+|.+||+| |+.++..+.+. + .++.+..+++.++..++.- ....+.......++++. ..|..+ .-+.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~----a~~~ 77 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAE----AANC 77 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHH----HHhc
Confidence 35689999998 44455555543 2 4677779999988766532 11110000000112222 122211 1256
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRF 253 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvl 253 (345)
.|+|++-+. .....+.++.++..++++..+
T Consensus 78 aDlVilavp-------s~~~~~vl~~i~~~l~~~~~v 107 (341)
T PRK12439 78 ADVVVMGVP-------SHGFRGVLTELAKELRPWVPV 107 (341)
T ss_pred CCEEEEEeC-------HHHHHHHHHHHHhhcCCCCEE
Confidence 799988432 235678899999999887644
No 425
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=76.96 E-value=12 Score=38.45 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-------cC-CCCCCCCCCCCCcEEEEEcccccccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDY-------FG-LSDLEKPTATGGVLQVHIGDVFSPSE 211 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~-------f~-~~~~~~~~~~~~rv~v~~gDa~~~l~ 211 (345)
++|.+||+| |+.++..+++. +.+|++.|.+|+..+...+. .+ +.... .....++++. .|..+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~g~i~~~-~~~~e--- 76 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAP--LPPEGRLTFC-ASLAE--- 76 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccch--hhhhhceEee-CCHHH---
Confidence 479999998 66666666653 67999999999987654321 11 11000 0001123221 22211
Q ss_pred cCCCcccEEEEcCCCCCCCCCCc-chHHHHHHHHhccCCCcEEEEEecCC
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQL-EEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l-~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
.-+..|+|+.-+ |+.+ ...+.|+.+...++|+-++..|..+.
T Consensus 77 -a~~~aD~Vieav------pe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi 119 (495)
T PRK07531 77 -AVAGADWIQESV------PERLDLKRRVLAEIDAAARPDALIGSSTSGF 119 (495)
T ss_pred -HhcCCCEEEEcC------cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 125679998744 3332 34567777777777776665554443
No 426
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.90 E-value=22 Score=34.16 Aligned_cols=96 Identities=8% Similarity=-0.016 Sum_probs=54.0
Q ss_pred CCCCEEEEeec-ccH-HHHHHHHhCCCCEEEEEECCHHH-HHHHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCC
Q 038076 140 PNGPIAIYGLG-GGT-AAHLMLDLWPSLKLEGWEIDEIL-IDKVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASG 215 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~-~~~~l~~~~p~~~v~~VEidp~v-i~~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~ 215 (345)
+..+|+++|+| .|. .++.+. .....+|++++.+++- .++|+++ +. .++. .|..+. -.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~-~~g~~~V~v~~r~~~ra~~la~~~-g~-------------~~~~~~~~~~~----l~ 237 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLA-AKGVAEITIANRTYERAEELAKEL-GG-------------NAVPLDELLEL----LN 237 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHH-HcCCCEEEEEeCCHHHHHHHHHHc-CC-------------eEEeHHHHHHH----Hh
Confidence 46889999986 232 233333 2344789999999875 4666663 31 1111 222222 24
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
.+|+||.-...+ .. .+.+..+.+....+|.+++++..+.
T Consensus 238 ~aDvVi~at~~~----~~---~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 238 EADVVISATGAP----HY---AKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred cCCEEEECCCCC----ch---HHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 589999743222 11 3444444333434688999988654
No 427
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=76.83 E-value=11 Score=33.84 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCH
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp 174 (345)
...+|+++|+|+ |+-....+...+-.+++.+|-|.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 467999999884 33332333334457899999874
No 428
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.53 E-value=20 Score=34.77 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=55.5
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc--ccccccc-cCC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG--DVFSPSE-DAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g--Da~~~l~-~~~ 214 (345)
.+..+||++|+| .|..+..+++.....+|++++.+++-.+.+++ ++... -+..... +..+.+. ...
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~ga~~---------~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-FGATD---------FINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCCc---------EeccccccchHHHHHHHHhC
Confidence 456889999764 33344455555543489999999999999876 44321 0111100 1111121 123
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+- .... ...+....+.|+++ |.++.
T Consensus 253 ~g~d~vid-~~g~---------~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 253 GGVDYSFE-CTGN---------ADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CCCCEEEE-CCCC---------hHHHHHHHHhcccCCCEEEE
Confidence 56898883 2111 24567777889885 88764
No 429
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=76.36 E-value=9.8 Score=36.28 Aligned_cols=93 Identities=10% Similarity=0.149 Sum_probs=52.8
Q ss_pred CCCCEEEEeecc-c-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGG-G-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~-G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++++++|.|. | .+++.+. .+ +.+|++++.++.-.+.+.+. +.. .+...|..+ .-+.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~-~~-G~~V~v~~R~~~~~~~~~~~-g~~------------~~~~~~l~~----~l~~a 210 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFS-AL-GARVFVGARSSADLARITEM-GLI------------PFPLNKLEE----KVAEI 210 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHH-HC-CCEEEEEeCCHHHHHHHHHC-CCe------------eecHHHHHH----HhccC
Confidence 568999999973 2 3333333 33 46999999998754443321 111 011112222 23579
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|+.-. |..+.+.+ ..+.+++ |.+++|+.+.+.
T Consensus 211 DiVint~------P~~ii~~~----~l~~~k~-~aliIDlas~Pg 244 (287)
T TIGR02853 211 DIVINTI------PALVLTAD----VLSKLPK-HAVIIDLASKPG 244 (287)
T ss_pred CEEEECC------ChHHhCHH----HHhcCCC-CeEEEEeCcCCC
Confidence 9999743 32333433 3345666 578889987665
No 430
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.33 E-value=19 Score=35.38 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=61.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
+..+|.++|+|+ |..+.+-++.....+|.+||++++=.++|+++ +.... -+++=. +|..+.+.. ++...
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f-GAT~~-----vn~~~~---~~vv~~i~~~T~gG~ 255 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF-GATHF-----VNPKEV---DDVVEAIVELTDGGA 255 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc-CCcee-----ecchhh---hhHHHHHHHhcCCCC
Confidence 457899999875 44444445556678999999999999999985 43321 011100 044444444 23366
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|..|- ... +.+.+++..+.+..+|..++-
T Consensus 256 d~~~e-~~G---------~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 256 DYAFE-CVG---------NVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred CEEEE-ccC---------CHHHHHHHHHHHhcCCeEEEE
Confidence 66642 211 235788888888889986654
No 431
>PLN02712 arogenate dehydrogenase
Probab=76.32 E-value=27 Score=37.43 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=56.9
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
...+|.+||+| |+.+++.+.+. +.+|.+++.++.. +.+++ ++ +. ...|..+.+ ....
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~-~G-------------v~-~~~~~~el~---~~~a 426 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQK-LG-------------VS-YFSDADDLC---EEHP 426 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHH-cC-------------Ce-EeCCHHHHH---hcCC
Confidence 45789999998 67788777652 4689999998754 43443 22 11 122333322 1347
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHh-ccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKD-RLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~-~L~pgGvlvvn~~~~~ 261 (345)
|+||+-+.. ..+.+.++.+.. .+++| .+++++.+..
T Consensus 427 DvVILavP~-------~~~~~vi~~l~~~~lk~g-~ivvDv~SvK 463 (667)
T PLN02712 427 EVILLCTSI-------LSTEKVLKSLPFQRLKRS-TLFVDVLSVK 463 (667)
T ss_pred CEEEECCCh-------HHHHHHHHHHHHhcCCCC-cEEEECCCcc
Confidence 999984422 245667777654 46665 5666877554
No 432
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=76.24 E-value=14 Score=35.16 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=58.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CCC
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--ASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~~ 215 (345)
.+..+||+.|+|+ |..+..+++.. +.+++++.-+++-.+..+++ +... -+.....+..+.+.. .++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~~-g~~~---------v~~~~~~~~~~~l~~~~~~~ 226 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFAREL-GADD---------TINVGDEDVAARLRELTDGE 226 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHHh-CCCE---------EecCcccCHHHHHHHHhCCC
Confidence 4567899997653 55555666553 68899999999999888663 3211 111111121121211 235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+-... ..+.+..+.+.|+++|.++.
T Consensus 227 ~vd~vld~~g----------~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 227 GADVVIDATG----------NPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCEEEECCC----------CHHHHHHHHHHHhcCCEEEE
Confidence 6999985321 13457788889999999874
No 433
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=75.98 E-value=22 Score=33.47 Aligned_cols=130 Identities=14% Similarity=0.048 Sum_probs=79.5
Q ss_pred CEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccC-CCcccEEE
Q 038076 143 PIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDA-SGRYAGIV 221 (345)
Q Consensus 143 ~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~-~~~yD~Ii 221 (345)
+++++=+|.|.+...+.+. .-..+.++|+|+...+.-+.+|+ .++.+|..+.-... ++..|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~--------------~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP--------------EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT--------------EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc--------------ccccccccccccccccccceEEE
Confidence 5889999999888887764 34678999999999999888873 57888998864331 11599998
Q ss_pred EcCCCCC----C----C--CCCcchHHHHHHHHhccCCCcEEEEEecCCCCCCccccCCCCCCCccchHHHHHHHHHHHH
Q 038076 222 VDLFSEG----K----V--LPQLEEVATWLKLKDRLMPNGRFMVNCGGIDGVSDMTYGAARPKSMNDVWMHNSAIRALSE 291 (345)
Q Consensus 222 ~D~f~~~----~----~--p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~l~~ 291 (345)
.-.+..+ . . +..-.-.++++. .+.++|.=+++=|+.+-... +....++.+++.|.+
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~-v~~~~Pk~~~~ENV~~l~~~-------------~~~~~~~~i~~~l~~ 132 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRI-VKELKPKYFLLENVPGLLSS-------------KNGEVFKEILEELEE 132 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHH-HHHHS-SEEEEEEEGGGGTG-------------GGHHHHHHHHHHHHH
T ss_pred eccCCceEeccccccccccccchhhHHHHHH-HhhccceEEEecccceeecc-------------ccccccccccccccc
Confidence 6543322 1 1 011112234444 45678999998899876541 111456677777765
Q ss_pred HCCCCEEEEEe
Q 038076 292 AFPGKVSWKRM 302 (345)
Q Consensus 292 ~F~~~v~~~~~ 302 (345)
. .-.+.+..+
T Consensus 133 l-GY~v~~~vl 142 (335)
T PF00145_consen 133 L-GYNVQWRVL 142 (335)
T ss_dssp T-TEEEEEEEE
T ss_pred c-ceeehhccc
Confidence 3 323444443
No 434
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.75 E-value=6.9 Score=37.75 Aligned_cols=103 Identities=14% Similarity=-0.027 Sum_probs=63.8
Q ss_pred EEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccEEEEc
Q 038076 144 IAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAGIVVD 223 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~Ii~D 223 (345)
|+++-||.|.+..-+.+. .-..+.++|+|+..++.-+.+|+- .++.+|..+.-...-...|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~~-------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFGN-------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCCC-------------CCCccChhhhhhhhCCCcCEEEec
Confidence 577888888888777653 224456799999999998888741 345677777532223468999875
Q ss_pred CCCCCC--------CCCC--cchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 224 LFSEGK--------VLPQ--LEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 224 ~f~~~~--------~p~~--l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
....+. .-.. -.-.++++. .+.++|.=+++=|+..--
T Consensus 67 ~PCq~fS~ag~~~~~~d~r~~L~~~~~r~-i~~~~P~~~v~ENV~~l~ 113 (315)
T TIGR00675 67 FPCQPFSIAGKRKGFEDTRGTLFFEIVRI-LKEKKPKFFLLENVKGLV 113 (315)
T ss_pred CCCcccchhcccCCCCCchhhHHHHHHHH-HhhcCCCEEEeeccHHHH
Confidence 433221 0000 112334443 345789877777876543
No 435
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=75.65 E-value=22 Score=40.05 Aligned_cols=110 Identities=11% Similarity=-0.005 Sum_probs=63.0
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCE-------------EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLK-------------LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG 204 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~-------------v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g 204 (345)
..++|++||+| +...+..+.+ .|+.+ |+++|++++-.+.+.+.+ ++++.+.-
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~-~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------------~~~~~v~l 634 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLAS-VKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------------ENAEAVQL 634 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh-CcCccccccccccccccEEEEECCCHHHHHHHHHhc------------CCCceEEe
Confidence 36799999998 4455555554 35544 999999987766544422 12233333
Q ss_pred ccccc--cccCCCcccEEEEcCCCCCC-------------CCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 205 DVFSP--SEDASGRYAGIVVDLFSEGK-------------VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 205 Da~~~--l~~~~~~yD~Ii~D~f~~~~-------------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|..++ +...-+..|+|++-++...+ +...-++.+-...+.+.-+..|+.+++-.+.++
T Consensus 635 Dv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDP 707 (1042)
T PLN02819 635 DVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDP 707 (1042)
T ss_pred ecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCH
Confidence 33332 11111349999986654321 111113444555666667778887777666555
No 436
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=75.63 E-value=5.5 Score=34.99 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=61.5
Q ss_pred CCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEE-EcccccccccCCCcccE
Q 038076 141 NGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVH-IGDVFSPSEDASGRYAG 219 (345)
Q Consensus 141 p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~-~gDa~~~l~~~~~~yD~ 219 (345)
.++.+++|..-=-.-...++ +...+|..||.++--++ +.| ..|+.-+ ..|...-.+.-.++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-~GA~~iltveyn~L~i~---~~~-----------~dr~ssi~p~df~~~~~~y~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-HGAAKILTVEYNKLEIQ---EEF-----------RDRLSSILPVDFAKNWQKYAGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHH-cCCceEEEEeecccccC---ccc-----------ccccccccHHHHHHHHHHhhccchh
Confidence 46788998875444444443 35688999998762211 111 1122221 12222111224577998
Q ss_pred EEEcC-CCC------CCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDL-FSE------GKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~-f~~------~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+.+=. ..+ +.+..+.-..+.+.++++.||+||.+.+.+.-...
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 75411 111 12335566788999999999999999887765543
No 437
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=75.18 E-value=16 Score=35.43 Aligned_cols=97 Identities=13% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
.+..+||+.|+| .|..+..+++..+..+|.+++.+++-.+.+++ ++... -+.... .+..+.+.. .+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~Ga~~---------~i~~~~~~~~~~~~v~~~~~ 255 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-FGVTE---------FVNPKDHDKPVQEVIAEMTG 255 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCCce---------EEcccccchhHHHHHHHHhC
Confidence 456789999854 33444455565543489999999999999977 44321 011110 011111211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+++ |... ..+.+..+.+.++++ |.+++
T Consensus 256 ~~~d~vi-d~~G---------~~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 256 GGVDYSF-ECTG---------NIDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred CCCCEEE-ECCC---------ChHHHHHHHHHhhcCCCEEEE
Confidence 3688776 3321 134667777889996 88764
No 438
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=75.06 E-value=24 Score=33.21 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=55.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc---cccC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP---SEDA 213 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~---l~~~ 213 (345)
.+..+||++|+| .|..+..+++.. +.+ |.+++-+++..+.++++ +.. .++..+...+ ....
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~------------~~~~~~~~~~~~~~~~~ 223 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-GAT------------ETVDPSREDPEAQKEDN 223 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCe------------EEecCCCCCHHHHHHhc
Confidence 456789999754 244444555544 455 89999999998888653 321 1222111111 1113
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+.+|+|+.-.. ..+.+..+.+.|+++|.++.
T Consensus 224 ~~~vd~v~~~~~----------~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 224 PYGFDVVIEATG----------VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CCCCcEEEECCC----------ChHHHHHHHHHHhcCCEEEE
Confidence 467999984211 12467777889999999864
No 439
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=74.94 E-value=25 Score=33.99 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=58.1
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCC-CEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPS-LKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~-~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+.+|.+||+|. |+...+.+...+- .++..+|++++..+ .+.+...... . ..++++..+|-.+ -+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~-----~-~~~~~i~~~~~~~-----~~~ 73 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVP-----F-TSPTKIYAGDYSD-----CKD 73 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcc-----c-cCCeEEEeCCHHH-----hCC
Confidence 357999999984 5554444444443 48999999887653 3333322211 1 1245666544322 367
Q ss_pred ccEEEEcCCCCCCCC-CC--c--chHHHHHHHHhcc---CCCcEEEEEecCC
Q 038076 217 YAGIVVDLFSEGKVL-PQ--L--EEVATWLKLKDRL---MPNGRFMVNCGGI 260 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p-~~--l--~t~ef~~~~~~~L---~pgGvlvvn~~~~ 260 (345)
.|+||+-+-.+...- .. + ...+.++++...+ +|+|+++ ++.++
T Consensus 74 adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vi-vvsNP 124 (315)
T PRK00066 74 ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFL-VASNP 124 (315)
T ss_pred CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EccCc
Confidence 899988543322110 11 1 1334455544444 4788764 44443
No 440
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.64 E-value=8.3 Score=37.57 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+.+++-++|+| -|.++..+.+.. +.+|++++-...=-|.|-+.++.. .-+.--+--+.++...+..|
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd-----------~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGAD-----------VFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcc-----------eeEEecCCHHHHHHHHHhhc
Confidence 56889999976 467777766654 689999999987777777777632 11211111123333456677
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.|+.-+.+ + +.-.++.+.+.|+++|.++.
T Consensus 249 g~~~~v~~-------~-a~~~~~~~~~~lk~~Gt~V~ 277 (360)
T KOG0023|consen 249 GGIDTVSN-------L-AEHALEPLLGLLKVNGTLVL 277 (360)
T ss_pred Ccceeeee-------c-cccchHHHHHHhhcCCEEEE
Confidence 77653321 1 23346777789999999875
No 441
>PRK08267 short chain dehydrogenase; Provisional
Probab=74.33 E-value=28 Score=31.63 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=45.0
Q ss_pred CCEEEEeecccH---HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc------cc
Q 038076 142 GPIAIYGLGGGT---AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS------ED 212 (345)
Q Consensus 142 ~~VLiIG~G~G~---~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l------~~ 212 (345)
+++|+.|+++|. +++.+++ .+.+|.+++.+++-.+...+... +.+++++..|..+.- ..
T Consensus 2 k~vlItGasg~iG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~~~ 69 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAA--EGWRVGAYDINEAGLAALAAELG----------AGNAWTGALDVTDRAAWDAALAD 69 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHhc----------CCceEEEEecCCCHHHHHHHHHH
Confidence 468888876542 3333433 35789999998886665444332 246888899987632 11
Q ss_pred C----CCcccEEEEcC
Q 038076 213 A----SGRYAGIVVDL 224 (345)
Q Consensus 213 ~----~~~yD~Ii~D~ 224 (345)
. .++.|+++..+
T Consensus 70 ~~~~~~~~id~vi~~a 85 (260)
T PRK08267 70 FAAATGGRLDVLFNNA 85 (260)
T ss_pred HHHHcCCCCCEEEECC
Confidence 1 45789999865
No 442
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=74.29 E-value=4.7 Score=34.85 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc---CCCc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED---ASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~---~~~~ 216 (345)
-+.-||++|+|-|-.=..|.+.+|+-+|.+.|-. ..-|-... -+.-+++.||+++.+.. .+.+
T Consensus 28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~------l~~hp~~~--------P~~~~~ilGdi~~tl~~~~~~g~~ 93 (160)
T PF12692_consen 28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA------LACHPSST--------PPEEDLILGDIRETLPALARFGAG 93 (160)
T ss_dssp --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--------S-GGG-----------GGGEEES-HHHHHHHHHHH-S-
T ss_pred CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee------cccCCCCC--------CchHheeeccHHHHhHHHHhcCCc
Confidence 3578999999999999999999999999999952 11222111 23346899999998764 2344
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHH-HHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWL-KLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~-~~~~~L~pgGvlvv 255 (345)
.-++=.|+-.+.. -....+...+. .+...|.|||+++.
T Consensus 94 a~laHaD~G~g~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 94 AALAHADIGTGDK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp EEEEEE----S-H-HHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 4555556544321 01112222222 56778999999974
No 443
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=74.14 E-value=21 Score=34.78 Aligned_cols=97 Identities=11% Similarity=0.161 Sum_probs=56.4
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE--ccccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI--GDVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~--gDa~~~l~~-~~ 214 (345)
.+..+||+.|+| -|..+.++++.....+|.+++.+++-.+.+++ ++... -+.... .+..+.+.. .+
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~-~Ga~~---------~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK-LGATD---------CVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCCCe---------EEcccccchhHHHHHHHHhC
Confidence 356789999865 34455566666543489999999999999976 44321 011110 111111111 22
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+ |.... ...+..+.+.++++ |.+++
T Consensus 254 ~g~d~vi-d~~G~---------~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 254 GGVDYSF-ECIGN---------VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CCCCEEE-ECCCC---------HHHHHHHHHHhhcCCCeEEE
Confidence 3689887 33211 23566777888886 88764
No 444
>PRK13243 glyoxylate reductase; Reviewed
Probab=74.10 E-value=11 Score=36.82 Aligned_cols=94 Identities=11% Similarity=0.079 Sum_probs=50.4
Q ss_pred CCCCEEEEeecc-c-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGG-G-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~-G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++|.+||+|. | .+++.+.. + +.+|.++|.++.-.. +.+ ++ +. ..+..+. -+.-
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~-~-G~~V~~~d~~~~~~~-~~~-~~-------------~~--~~~l~el----l~~a 205 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKG-F-GMRILYYSRTRKPEA-EKE-LG-------------AE--YRPLEEL----LRES 205 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-C-CCEEEEECCCCChhh-HHH-cC-------------CE--ecCHHHH----HhhC
Confidence 457899999983 3 45555543 3 578999998754221 111 11 11 1122222 2457
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++-++.... -.++...+ ..+.++|| .+++|+....-
T Consensus 206 DiV~l~lP~t~~-T~~~i~~~----~~~~mk~g-a~lIN~aRg~~ 244 (333)
T PRK13243 206 DFVSLHVPLTKE-TYHMINEE----RLKLMKPT-AILVNTARGKV 244 (333)
T ss_pred CEEEEeCCCChH-HhhccCHH----HHhcCCCC-eEEEECcCchh
Confidence 999986544221 12233333 44556665 45569876554
No 445
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=73.94 E-value=18 Score=35.11 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=56.8
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc--cccccccc-CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG--DVFSPSED-AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g--Da~~~l~~-~~ 214 (345)
.+..+||++|+| -|..+.++++.....+|.+++.+++-.+.+++ ++... -+..... |..+.+.. .+
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa~~---------~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGATD---------CVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCCCE---------EEcccccchHHHHHHHHHhC
Confidence 456889999864 33444555665543379999999999999865 44321 0111111 12222211 23
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlvv 255 (345)
..+|+|+- .... ...++.+.+.|+++ |.++.
T Consensus 255 ~g~d~vid-~~g~---------~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 255 GGVDYTFE-CIGN---------VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred CCCcEEEE-CCCC---------hHHHHHHHHhhccCCCeEEE
Confidence 37998873 2211 24677778889887 88764
No 446
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=73.88 E-value=21 Score=33.50 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCCCCEEEEee--cccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCC
Q 038076 139 VPNGPIAIYGL--GGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~--G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~ 215 (345)
.+..+||+.|+ +.|..+..+++.. +.++.++.-++.-.+.+++.++... -+.....|..+-+. ..++
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~v~~~~~~ 213 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLL-GARVVGIAGSDEKCRWLVEELGFDA---------AINYKTPDLAEALKEAAPD 213 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhhcCCce---------EEecCChhHHHHHHHhccC
Confidence 34578999984 3455555666553 5789999999998888877555321 11111111111111 1235
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+++ |... ...++.+.+.|+++|.++.
T Consensus 214 ~~d~vi-~~~g----------~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 214 GIDVYF-DNVG----------GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred CceEEE-Ecch----------HHHHHHHHHhcCCCceEEE
Confidence 799887 4322 1356777888999999763
No 447
>PRK06153 hypothetical protein; Provisional
Probab=73.66 E-value=5.1 Score=39.96 Aligned_cols=52 Identities=23% Similarity=0.197 Sum_probs=36.1
Q ss_pred CcccchHHHHHhhccc------cCCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECC
Q 038076 122 HKWTGSYWDEFVSLPA------IVPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEID 173 (345)
Q Consensus 122 ~~l~~~Y~~~~~~l~~------~~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEid 173 (345)
++-++.|.+.+..--- -....+|+++||| .|+.....+.+.+-.+|+.||-|
T Consensus 151 ~~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 151 EDSVFNYPDTASSRAGIGALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred cCCceehhhhhccccChHHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4567888886642211 1256899999987 56666666666677899999987
No 448
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.53 E-value=4.5 Score=35.11 Aligned_cols=64 Identities=16% Similarity=0.110 Sum_probs=45.6
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP 209 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~ 209 (345)
.+..+.++||.|.|.+.....+. .-..-++||++|-.+..+|-+---.. -..+.++.-.|..++
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g------~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAG------CAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHh------cccchhhhhhhhhhc
Confidence 34578999999999988877764 34678999999999999876542111 134566666666554
No 449
>PRK07102 short chain dehydrogenase; Provisional
Probab=73.40 E-value=22 Score=31.91 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=44.2
Q ss_pred CCEEEEeecccHHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc------ccC
Q 038076 142 GPIAIYGLGGGTAAHLMLDLW--PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS------EDA 213 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~--p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l------~~~ 213 (345)
+++++.|+.+| ++..+.+.+ .+.+|.+++.+++-.+...+..... .+.+++++..|..+.- +..
T Consensus 2 ~~vlItGas~g-iG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 2 KKILIIGATSD-IARACARRYAAAGARLYLAARDVERLERLADDLRAR-------GAVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred cEEEEEcCCcH-HHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-------cCCeEEEEecCCCChHHHHHHHHHH
Confidence 57899996543 333333321 2578999999886544332222111 1357888989887642 122
Q ss_pred CCcccEEEEcC
Q 038076 214 SGRYAGIVVDL 224 (345)
Q Consensus 214 ~~~yD~Ii~D~ 224 (345)
.+++|+++..+
T Consensus 74 ~~~~d~vv~~a 84 (243)
T PRK07102 74 PALPDIVLIAV 84 (243)
T ss_pred hhcCCEEEECC
Confidence 34679999755
No 450
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=73.23 E-value=24 Score=35.42 Aligned_cols=101 Identities=8% Similarity=-0.046 Sum_probs=55.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.++|+++|+| .|......+...+..+|++++.+++-.+ ++++ ++. .+ +...|..+.+ ..+
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~-~g~-----------~~-~~~~~~~~~l----~~a 243 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEE-FGG-----------EA-IPLDELPEAL----AEA 243 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH-cCC-----------cE-eeHHHHHHHh----ccC
Confidence 45789999987 3333322233334458999999987755 5544 331 11 1112332222 468
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
|+||.-... +..+.+.+.++...+.=+.++.+++.+..+.
T Consensus 244 DvVI~aT~s----~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 244 DIVISSTGA----PHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred CEEEECCCC----CCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 999974322 3445667766654322113567888877543
No 451
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=73.08 E-value=48 Score=31.84 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=53.8
Q ss_pred CCCCEEEEeec-ccHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc----cccccc-
Q 038076 140 PNGPIAIYGLG-GGTAAHLMLDLWPSL-KLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV----FSPSED- 212 (345)
Q Consensus 140 ~p~~VLiIG~G-~G~~~~~l~~~~p~~-~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa----~~~l~~- 212 (345)
+..+||+.|+| .|..+..+++.. +. +|++++.+++-.+.+++ ++.... +.....+. ....+.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~-~g~~~v---------i~~~~~~~~~~~~~i~~~~ 245 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLA-GARRVIVIDGSPERLELARE-FGADAT---------IDIDELPDPQRRAIVRDIT 245 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHH-cCCCeE---------EcCcccccHHHHHHHHHHh
Confidence 56789998753 233334455544 45 89999999998888865 453210 00000010 011111
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
..+.+|+|+--... ...+....+.|+++|.++.
T Consensus 246 ~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 246 GGRGADVVIEASGH----------PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred CCCCCcEEEECCCC----------hHHHHHHHHHhccCCEEEE
Confidence 23569988742211 2346677789999999873
No 452
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=73.01 E-value=12 Score=36.74 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=55.8
Q ss_pred EEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCCCcccE
Q 038076 144 IAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDASGRYAG 219 (345)
Q Consensus 144 VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~~~yD~ 219 (345)
|++||+| .| ..++.|.+..+..+|++.+.+++-.+...+.+. ..+++.+.-|..+. |...-+..|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~l~~~~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL----------GDRVEAVQVDVNDPESLAELLRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T----------TTTEEEEE--TTTHHHHHHHHTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc----------ccceeEEEEecCCHHHHHHHHhcCCE
Confidence 6899985 23 233344443333499999999998776655431 45788999888764 2222356699
Q ss_pred EEEcCCCCCC-------------CCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGK-------------VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~-------------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||.-+..... +.+.-+-.+....+.+.-+..|+.++...+.++
T Consensus 71 Vin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~P 126 (386)
T PF03435_consen 71 VINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDP 126 (386)
T ss_dssp EEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTT
T ss_pred EEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCccccc
Confidence 9964422110 111111133344445555567776666555655
No 453
>PRK11524 putative methyltransferase; Provisional
Probab=72.75 E-value=5.9 Score=37.55 Aligned_cols=44 Identities=18% Similarity=0.046 Sum_probs=38.6
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
+..-||+-=+|+|+++.+..+. +-+..++|||++.+++|++.+.
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHH
Confidence 5567999999999999887765 6789999999999999999874
No 454
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=72.71 E-value=49 Score=32.04 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=25.7
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHH
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILI 177 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi 177 (345)
+.++|.+||+|. |+...+.+....-..+..+|++++..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~ 43 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP 43 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh
Confidence 346899999884 44444444333324799999999854
No 455
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=72.70 E-value=16 Score=34.91 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=58.0
Q ss_pred CEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHH-HHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 143 PIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEIL-IDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~v-i~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+|..||+| |..++..|.+. +..+++.+.+|+- .+.++++-. .. . .+.++ .-+..|+
T Consensus 2 kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~Ga-~~-------------a-~s~~e----aa~~aDv 60 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAAGA-TV-------------A-ASPAE----AAAEADV 60 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHcCC-cc-------------c-CCHHH----HHHhCCE
Confidence 68889999 66777777763 6899999999988 676666432 11 0 11111 2467899
Q ss_pred EEEcCCCCCCCCCCcchHHHH---HHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATW---LKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~---~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||.-+.+...+ .+.+ .-+.+.++||.+++ ++.+.++
T Consensus 61 Vitmv~~~~~V------~~V~~g~~g~~~~~~~G~i~I-DmSTisp 99 (286)
T COG2084 61 VITMLPDDAAV------RAVLFGENGLLEGLKPGAIVI-DMSTISP 99 (286)
T ss_pred EEEecCCHHHH------HHHHhCccchhhcCCCCCEEE-ECCCCCH
Confidence 99877664321 2222 23556677777664 6665554
No 456
>PLN02427 UDP-apiose/xylose synthase
Probab=72.66 E-value=10 Score=37.12 Aligned_cols=77 Identities=13% Similarity=0.047 Sum_probs=44.2
Q ss_pred CCCCEEEEeecccHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccc--cccCC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLW---PSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSP--SEDAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~---p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~--l~~~~ 214 (345)
++++||+.|+ +|-++.++.+.. .+.+|.+++.++.-.+ ....... ....++++++.+|..+. +...-
T Consensus 13 ~~~~VlVTGg-tGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~---~l~~~~~----~~~~~~~~~~~~Dl~d~~~l~~~~ 84 (386)
T PLN02427 13 KPLTICMIGA-GGFIGSHLCEKLMTETPHKVLALDVYNDKIK---HLLEPDT----VPWSGRIQFHRINIKHDSRLEGLI 84 (386)
T ss_pred cCcEEEEECC-cchHHHHHHHHHHhcCCCEEEEEecCchhhh---hhhcccc----ccCCCCeEEEEcCCCChHHHHHHh
Confidence 4678999984 455555554432 2468999987654322 1111100 00135799999998764 22222
Q ss_pred CcccEEEEcC
Q 038076 215 GRYAGIVVDL 224 (345)
Q Consensus 215 ~~yD~Ii~D~ 224 (345)
+.+|+||.-+
T Consensus 85 ~~~d~ViHlA 94 (386)
T PLN02427 85 KMADLTINLA 94 (386)
T ss_pred hcCCEEEEcc
Confidence 3589998744
No 457
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=72.35 E-value=48 Score=30.96 Aligned_cols=47 Identities=21% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCcccEEEEcCCCCCC----------------CCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 214 SGRYAGIVVDLFSEGK----------------VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~----------------~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
...||+|++|...+.. +++. ...+...-++.++.+..+++|-..+..
T Consensus 115 ~~~~~~iliD~P~g~~~~~~~al~~aD~vL~V~~~D--a~s~~~L~q~~l~~~~~~liNq~~~~s 177 (243)
T PF06564_consen 115 LGPYDWILIDTPPGPSPYTRQALAAADLVLVVVNPD--AASHARLHQRALPAGHRFLINQYDPAS 177 (243)
T ss_pred cCCCCEEEEeCCCCCcHHHHHHHHhCCeEEEEeCCC--HHHHHHHHHhcccCCcEEEEeccCccc
Confidence 3789999999977543 1111 112233334567888889999887775
No 458
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.29 E-value=13 Score=31.07 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=53.6
Q ss_pred CCCCEEEEeeccc--HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+.+++++||.|+- ..+..+.+ ..-.+|+++.-+++-.+.-.+.++ +..++++.-+-.. ..-..+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt~~ra~~l~~~~~----------~~~~~~~~~~~~~---~~~~~~ 76 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRTPERAEALAEEFG----------GVNIEAIPLEDLE---EALQEA 76 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESSHHHHHHHHHHHT----------GCSEEEEEGGGHC---HHHHTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHcC----------ccccceeeHHHHH---HHHhhC
Confidence 4689999998732 33334444 344679999999875554444442 2345555433222 224679
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcE-EEEEecC
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGR-FMVNCGG 259 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGv-lvvn~~~ 259 (345)
|+||.-...+ ....+.+.+...... . +++.+..
T Consensus 77 DivI~aT~~~----~~~i~~~~~~~~~~~-----~~~v~Dla~ 110 (135)
T PF01488_consen 77 DIVINATPSG----MPIITEEMLKKASKK-----LRLVIDLAV 110 (135)
T ss_dssp SEEEE-SSTT----STSSTHHHHTTTCHH-----CSEEEES-S
T ss_pred CeEEEecCCC----CcccCHHHHHHHHhh-----hhceecccc
Confidence 9999744332 224555555443332 4 6777743
No 459
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=71.98 E-value=17 Score=31.73 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=54.4
Q ss_pred CCCCEEEEeecccHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHhc-CCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLGGGTAAHLMLD-LWPSLKLEGWEIDEILIDKVRDYF-GLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~-~~p~~~v~~VEidp~vi~~A~~~f-~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+..+|++||+= ++-..+.+ ..+..++...|+|...-....+.| .+.. +.|. +..+.-..+|
T Consensus 25 ~~~~iaclstP--sl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~------~~p~---------~~~~~l~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTP--SLYEALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDY------NEPE---------ELPEELKGKF 87 (162)
T ss_pred CCCEEEEEeCc--HHHHHHHhhcCCCccEEEEeecchHHhcCCcceEECCC------CChh---------hhhhhcCCCc
Confidence 45789998865 44445554 456789999999987766543312 1110 1111 1111225799
Q ss_pred cEEEEcCCCCCCCCCCcchHHHH----HHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATW----LKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~----~~~~~~L~pgGvlvvn 256 (345)
|+|++|.+ +.+.|.+ +.++..+++++.++.-
T Consensus 88 d~vv~DPP--------Fl~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 88 DVVVIDPP--------FLSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred eEEEECCC--------CCCHHHHHHHHHHHHHHhCccceEEEe
Confidence 99999831 2455555 5566667887777643
No 460
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=71.27 E-value=18 Score=35.02 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=55.2
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEc---ccccccc-cCC
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIG---DVFSPSE-DAS 214 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~g---Da~~~l~-~~~ 214 (345)
+..+||+.|+|+ |..+..+.+..+...+.+++.+++-.+.++++ +.. .++.. +..+.+. ..+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~-g~~------------~~i~~~~~~~~~~v~~~~~ 252 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL-GAT------------HVINPKEEDLVAAIREITG 252 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCc------------EEecCCCcCHHHHHHHHhC
Confidence 457899987542 44445555555444799999999988888763 321 11111 1111111 124
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+--... ...+..+.+.|+++|.++.
T Consensus 253 ~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 253 GGVDYALDTTGV----------PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CCCcEEEECCCC----------cHHHHHHHHHhccCCEEEE
Confidence 569988742211 1356778888999999874
No 461
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=71.19 E-value=1e+02 Score=31.08 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=29.7
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRD 182 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~ 182 (345)
...++|+++|+|. |......++.+ +.+|.++|.||.-...|+.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~ 236 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM 236 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh
Confidence 3578999999984 44444444443 5799999999976554443
No 462
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.97 E-value=56 Score=31.47 Aligned_cols=103 Identities=11% Similarity=0.052 Sum_probs=53.1
Q ss_pred CEEEEeecc-cHHHHHHHHhCCC-CEEEEEECCHHHHHH-HHHhcCCCCCCCCCCCC-CcEEEEEcccccccccCCCccc
Q 038076 143 PIAIYGLGG-GTAAHLMLDLWPS-LKLEGWEIDEILIDK-VRDYFGLSDLEKPTATG-GVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 143 ~VLiIG~G~-G~~~~~l~~~~p~-~~v~~VEidp~vi~~-A~~~f~~~~~~~~~~~~-~rv~v~~gDa~~~l~~~~~~yD 218 (345)
+|.+||+|. |+...+++-..+- .++..+|++++..+- +.+.-.... ... .++++..+|-.+ -+.-|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~-----~~~~~~~~i~~~~y~~-----~~~aD 70 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATA-----LTYSTNTKIRAGDYDD-----CADAD 70 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhc-----cCCCCCEEEEECCHHH-----hCCCC
Confidence 578999983 5444333323332 589999998654432 221111000 111 246777666322 36789
Q ss_pred EEEEcCCCCCCCC-C----C--cchHHHHHHHHhcc---CCCcEEEE
Q 038076 219 GIVVDLFSEGKVL-P----Q--LEEVATWLKLKDRL---MPNGRFMV 255 (345)
Q Consensus 219 ~Ii~D~f~~~~~p-~----~--l~t~ef~~~~~~~L---~pgGvlvv 255 (345)
+|++-+-.+..+- . . -.+.+.++++...+ .|+|++++
T Consensus 71 ivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv 117 (307)
T cd05290 71 IIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL 117 (307)
T ss_pred EEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 9998654322211 1 0 12334555555554 47787654
No 463
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=70.94 E-value=28 Score=33.55 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=58.3
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccc----ccc---ccc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDV----FSP---SED 212 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa----~~~---l~~ 212 (345)
.+|+++|+| |+.++..|.+. + ..|+.+=-++. ++.-++. + +.+...+. ... -..
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-~~V~~~~R~~~-~~~l~~~-G-------------L~i~~~~~~~~~~~~~~~~~~ 63 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-HDVTLLVRSRR-LEALKKK-G-------------LRIEDEGGNFTTPVVAATDAE 63 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-CeEEEEecHHH-HHHHHhC-C-------------eEEecCCCccccccccccChh
Confidence 379999999 55666566553 4 56776666666 4444443 3 22222222 000 011
Q ss_pred CCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 213 ASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
....+|+||+..= ...+.+.+..++..++++-++++...+
T Consensus 64 ~~~~~Dlviv~vK-------a~q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 64 ALGPADLVIVTVK-------AYQLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred hcCCCCEEEEEec-------cccHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 3468999998642 236788999999999999987755443
No 464
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=70.77 E-value=14 Score=36.09 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=23.7
Q ss_pred CCCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECCH
Q 038076 140 PNGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEidp 174 (345)
...+|+++|+|+ |+ ++..|. ...-.+|+.||-|.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCc
Confidence 467999999983 44 444444 33446999999873
No 465
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=70.77 E-value=28 Score=33.24 Aligned_cols=74 Identities=15% Similarity=0.067 Sum_probs=39.9
Q ss_pred CCEEEEeecc-c-HHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhc-CCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 142 GPIAIYGLGG-G-TAAHLMLDLWPS-LKLEGWEIDEILIDKVRDYF-GLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 142 ~~VLiIG~G~-G-~~~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f-~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
++|.+||+|. | +++..+.. .+. .+|..+|++++..+-...-+ .... ......++..+|... -+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~~~~~~~~a~dL~~~~~-----~~~~~~~i~~~~~~~-----l~~a 69 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVN-QGIADELVLIDINEEKAEGEALDLEDALA-----FLPSPVKIKAGDYSD-----CKDA 69 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcchhhHhHhhHHHHhh-----ccCCCeEEEcCCHHH-----hCCC
Confidence 3689999883 3 34444443 332 48999999988765332221 1000 011234444443222 3679
Q ss_pred cEEEEcCCC
Q 038076 218 AGIVVDLFS 226 (345)
Q Consensus 218 D~Ii~D~f~ 226 (345)
|+||+-.-.
T Consensus 70 DIVIitag~ 78 (306)
T cd05291 70 DIVVITAGA 78 (306)
T ss_pred CEEEEccCC
Confidence 999985533
No 466
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=70.75 E-value=28 Score=35.93 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=63.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
.+|-.||+| |..+++-|++ .+.+|++.+.+++-++...+.+.... ...-....+..++.+ .-++.|+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~--~G~~V~V~NRt~~k~~~l~~~~~~~G--------a~~~~~a~s~~e~v~-~l~~~dv 75 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKKEG--------NLPLYGFKDPEDFVL-SIQKPRS 75 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHh--CCCeEEEECCCHHHHHHHHHhhhhcC--------CcccccCCCHHHHHh-cCCCCCE
Confidence 579999999 5577777765 36899999999988876544321000 000012234444432 2245899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
||+-+.++. ...+.++.+...|++| -+++++.+...
T Consensus 76 Ii~~v~~~~------aV~~Vi~gl~~~l~~G-~iiID~sT~~~ 111 (493)
T PLN02350 76 VIILVKAGA------PVDQTIKALSEYMEPG-DCIIDGGNEWY 111 (493)
T ss_pred EEEECCCcH------HHHHHHHHHHhhcCCC-CEEEECCCCCH
Confidence 998765542 2344556677778775 55678877664
No 467
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=69.84 E-value=36 Score=31.14 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=54.2
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
.+..++|+.|+|+ |..+..+++.. +.+ |.+++.+++-.+.++++ +... .+ ..... .. .....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~-g~~~---------~~--~~~~~-~~--~~~~~ 159 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEAL-GPAD---------PV--AADTA-DE--IGGRG 159 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHc-CCCc---------cc--cccch-hh--hcCCC
Confidence 4567899997653 44444445544 355 99999999999988875 3111 00 00000 11 13456
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+..... ........+.|+++|.++.
T Consensus 160 ~d~vl~~~~~----------~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 160 ADVVIEASGS----------PSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCEEEEccCC----------hHHHHHHHHHhcCCcEEEE
Confidence 9988842211 2356777888999999864
No 468
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=69.53 E-value=29 Score=33.75 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=51.1
Q ss_pred CCCCEEEEeec--ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 140 PNGPIAIYGLG--GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G--~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
..++|.+||+| |..+++.+.. -+.+|.++|.++..... + .+ ...+..+ .-+.-
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~--~G~~V~~~d~~~~~~~~----~--------------~~-~~~~l~e----ll~~a 199 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAG--FGATITAYDAYPNKDLD----F--------------LT-YKDSVKE----AIKDA 199 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCChhHhhh----h--------------hh-ccCCHHH----HHhcC
Confidence 34679999998 3345555543 35799999998753210 0 00 0112222 23567
Q ss_pred cEEEEcCCCCCCCCCCcchH-HHHHHHHhccCCCcEEEEEecCCCC
Q 038076 218 AGIVVDLFSEGKVLPQLEEV-ATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~-ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+|++-+.... .|. .+-+...+.+++| .+++|+....-
T Consensus 200 DiVil~lP~t~------~t~~li~~~~l~~mk~g-avlIN~aRG~~ 238 (330)
T PRK12480 200 DIISLHVPANK------ESYHLFDKAMFDHVKKG-AILVNAARGAV 238 (330)
T ss_pred CEEEEeCCCcH------HHHHHHhHHHHhcCCCC-cEEEEcCCccc
Confidence 99998543321 122 2334566677765 56678876554
No 469
>PRK10037 cell division protein; Provisional
Probab=69.44 E-value=59 Score=29.83 Aligned_cols=21 Identities=10% Similarity=-0.133 Sum_probs=14.4
Q ss_pred CCEEEEEECCHHHHHHHHHhcCC
Q 038076 164 SLKLEGWEIDEILIDKVRDYFGL 186 (345)
Q Consensus 164 ~~~v~~VEidp~vi~~A~~~f~~ 186 (345)
+.+|.+||.||.. .+...|+.
T Consensus 30 G~rVLlID~D~q~--~~s~~~g~ 50 (250)
T PRK10037 30 GENVLVIDACPDN--LLRLSFNV 50 (250)
T ss_pred CCcEEEEeCChhh--hHHHHhCC
Confidence 6789999999974 23444443
No 470
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.43 E-value=5.3 Score=39.81 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=47.0
Q ss_pred CCcEEEEEccccccccc-CCCcccEEE-EcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCC
Q 038076 196 GGVLQVHIGDVFSPSED-ASGRYAGIV-VDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGI 260 (345)
Q Consensus 196 ~~rv~v~~gDa~~~l~~-~~~~yD~Ii-~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~ 260 (345)
-.++++|+++..+++++ +++++|..+ +|..+- +++. .-.+.++.+.+.++|||.++.--...
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dw--m~~~-~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDW--MDPE-QLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhh--CCHH-HHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 37999999999999986 488999765 577663 2222 33567899999999999998754433
No 471
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.26 E-value=5.7 Score=36.66 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=47.5
Q ss_pred CCCCCEEEEeecccHHHHHHHHhCC--CCEEEEEECC-HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLMLDLWP--SLKLEGWEID-EILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l~~~~p--~~~v~~VEid-p~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+++.||+.||..|.++.++.+.+. +..|.+.--. +.|.+++.+ |++....-+..++..+.-+.+..|.+ +.+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~~~~V~~v~~evr~~---~~G 80 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSKPEEVVTVSGEVRAN---PDG 80 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCChHHHHHHHHHHhhC---CCC
Confidence 3578999999999999888887543 4666655433 345555544 34432110111222333233333332 678
Q ss_pred cccEEEEcCCCC
Q 038076 216 RYAGIVVDLFSE 227 (345)
Q Consensus 216 ~yD~Ii~D~f~~ 227 (345)
+.|+.+-.+-.+
T Consensus 81 kld~L~NNAG~~ 92 (289)
T KOG1209|consen 81 KLDLLYNNAGQS 92 (289)
T ss_pred ceEEEEcCCCCC
Confidence 888888765443
No 472
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.14 E-value=77 Score=31.94 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=64.8
Q ss_pred CCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE----EEccccccccc--CC-
Q 038076 142 GPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV----HIGDVFSPSED--AS- 214 (345)
Q Consensus 142 ~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v----~~gDa~~~l~~--~~- 214 (345)
.+|-++|+|==.++....-...+.+|.++|||+..++.-.+-- .. ..++.+.- .+..+ .++. ..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~--~~-----i~e~~~~~~v~~~v~~g--~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE--SY-----IEEPDLDEVVKEAVESG--KLRATTDPE 80 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc--ce-----eecCcHHHHHHHHHhcC--CceEecChh
Confidence 6799999994444444333335789999999999998654311 00 00111110 00000 1111 11
Q ss_pred --CcccEEEEcCCCCCC---CCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 215 --GRYAGIVVDLFSEGK---VLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 215 --~~yD~Ii~D~f~~~~---~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
+.-|++++-+..+-. -|.--+-....+.+...|++|-.+++-...++.
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PG 133 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPG 133 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCC
Confidence 378998887766432 232234456677889999999999887666654
No 473
>PLN02702 L-idonate 5-dehydrogenase
Probab=69.14 E-value=17 Score=35.08 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=56.7
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEE--EEcccccccc----
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQV--HIGDVFSPSE---- 211 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v--~~gDa~~~l~---- 211 (345)
.+..+|+++|.| -|..+..+++......|.+++.++.-.+.++++ +... .+.+ ...+..+.+.
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~~~---------~~~~~~~~~~~~~~~~~~~~ 249 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL-GADE---------IVLVSTNIEDVESEVEEIQK 249 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CCCE---------EEecCcccccHHHHHHHHhh
Confidence 356789999754 244445555555444689999999999988874 4321 1111 1112212111
Q ss_pred cCCCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 212 DASGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 212 ~~~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
...+.+|+|+--. .. ...+..+.+.|+++|.++.
T Consensus 250 ~~~~~~d~vid~~-g~---------~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 250 AMGGGIDVSFDCV-GF---------NKTMSTALEATRAGGKVCL 283 (364)
T ss_pred hcCCCCCEEEECC-CC---------HHHHHHHHHHHhcCCEEEE
Confidence 1235689887421 10 2357788889999998753
No 474
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=69.13 E-value=41 Score=31.54 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCCCEEEEeecccHHHHHH---HHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCC
Q 038076 139 VPNGPIAIYGLGGGTAAHLM---LDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASG 215 (345)
Q Consensus 139 ~~p~~VLiIG~G~G~~~~~l---~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~ 215 (345)
.+..+||+.|. |.++..+ ++. -+.+++++..+++-.+.+++ ++.... +.. .+. ...+
T Consensus 154 ~~g~~vlV~g~--g~vg~~~~q~a~~-~G~~vi~~~~~~~~~~~~~~-~g~~~~---------~~~-----~~~--~~~~ 213 (319)
T cd08242 154 TPGDKVAVLGD--GKLGLLIAQVLAL-TGPDVVLVGRHSEKLALARR-LGVETV---------LPD-----EAE--SEGG 213 (319)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHH-cCCcEE---------eCc-----ccc--ccCC
Confidence 35678999974 4444443 443 35779999999999999988 553310 000 011 2346
Q ss_pred cccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 216 RYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 216 ~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
.+|+|+- ... ..+.++.+.+.|+++|.++.
T Consensus 214 ~~d~vid-~~g---------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 214 GFDVVVE-ATG---------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CCCEEEE-CCC---------ChHHHHHHHHHhhcCCEEEE
Confidence 7998884 211 13456777888999999875
No 475
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=69.12 E-value=50 Score=31.02 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=55.3
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
.+..+||+.|+| .|..+..+++.. +.+|+++..+++..+.+++ ++... ++..+.........+.+
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~-~g~~~------------~~~~~~~~~~~~~~~~~ 226 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARK-LGADE------------VVDSGAELDEQAAAGGA 226 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-hCCcE------------EeccCCcchHHhccCCC
Confidence 456789999765 444444445443 5789999999999888865 44211 11111111111123468
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVN 256 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn 256 (345)
|+++ |.... .+....+.+.|+++|.++.-
T Consensus 227 d~vi-~~~~~---------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 227 DVIL-VTVVS---------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CEEE-ECCCc---------HHHHHHHHHhcccCCEEEEE
Confidence 9887 33221 23567778899999988643
No 476
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=68.95 E-value=20 Score=35.55 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=56.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEE---ccccccccc--
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHI---GDVFSPSED-- 212 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~---gDa~~~l~~-- 212 (345)
.+..+||+.|+| .|..+..+++......|.++|.+++-.++|++ ++.. .+.. .|..+.+..
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~-~Ga~------------~v~~~~~~~~~~~v~~~~ 250 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS-FGCE------------TVDLSKDATLPEQIEQIL 250 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH-cCCe------------EEecCCcccHHHHHHHHc
Confidence 345788886654 33344455555544456678999999999988 4421 1111 111121211
Q ss_pred CCCcccEEEEcCCCCCC-CC---CCcchHHHHHHHHhccCCCcEEEE
Q 038076 213 ASGRYAGIVVDLFSEGK-VL---PQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 213 ~~~~yD~Ii~D~f~~~~-~p---~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
....+|+|+--.-.+.. .+ ..-.....++.+.+.++++|.+++
T Consensus 251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 23468988742211100 00 000112368888899999999875
No 477
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.90 E-value=9.7 Score=37.08 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=56.4
Q ss_pred CCCCEEEEeeccc-HHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc-CCCcc
Q 038076 140 PNGPIAIYGLGGG-TAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED-ASGRY 217 (345)
Q Consensus 140 ~p~~VLiIG~G~G-~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~-~~~~y 217 (345)
+..++.+.|+|+= ....+-.+.....+|.+|||+++=.+.|+++ +..+.. +|+ .+.. -..+.+.+ ++..+
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f-GaTe~i-----Np~-d~~~-~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF-GATEFI-----NPK-DLKK-PIQEVIIEMTDGGV 263 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc-Ccceec-----Chh-hccc-cHHHHHHHHhcCCc
Confidence 4577899998854 4444445556679999999999999999874 544421 333 1110 12223322 34555
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCC-cEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPN-GRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pg-Gvlv 254 (345)
|.-+=-. -..+.++++...-+.| |.-+
T Consensus 264 DysfEc~----------G~~~~m~~al~s~h~GwG~sv 291 (375)
T KOG0022|consen 264 DYSFECI----------GNVSTMRAALESCHKGWGKSV 291 (375)
T ss_pred eEEEEec----------CCHHHHHHHHHHhhcCCCeEE
Confidence 5554211 1235566666666777 6633
No 478
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.85 E-value=31 Score=32.85 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=53.5
Q ss_pred CCCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc-cCCCc
Q 038076 139 VPNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE-DASGR 216 (345)
Q Consensus 139 ~~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~-~~~~~ 216 (345)
.+..+||+.|+|+ |..+..+++..+..+|.+++-+++-.+.+++ ++... -+.....+.....+ ...+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~~~---------~~~~~~~~~~~~~~~~~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK-MGADV---------VINPREEDVVEVKSVTDGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCcce---------eeCcccccHHHHHHHcCCCC
Confidence 3557788866432 3344455555442378888878877777776 34221 01111112111111 12457
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+|+|+-... +.+....+.+.|+++|.++.
T Consensus 232 vd~vld~~g----------~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 232 VDVVLEMSG----------NPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhccCCEEEE
Confidence 899985321 13456777889999999864
No 479
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.57 E-value=51 Score=31.83 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=39.8
Q ss_pred CCCEEEEeec-ccH-HHHHHHHhCCCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEE-cccccccccCCCc
Q 038076 141 NGPIAIYGLG-GGT-AAHLMLDLWPSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHI-GDVFSPSEDASGR 216 (345)
Q Consensus 141 p~~VLiIG~G-~G~-~~~~l~~~~p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~-gDa~~~l~~~~~~ 216 (345)
..+|.+||+| -|+ ++..+....-..++..+|++++..+ .+.+.-.... +... .+++. +|..+ -+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~-----~~~~-~~v~~~~dy~~-----~~~ 71 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSA-----FLKN-PKIEADKDYSV-----TAN 71 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhc-----cCCC-CEEEECCCHHH-----hCC
Confidence 4689999987 343 3333333222368999999886543 2222221111 0111 25554 55433 256
Q ss_pred ccEEEEcCC
Q 038076 217 YAGIVVDLF 225 (345)
Q Consensus 217 yD~Ii~D~f 225 (345)
.|+|++.+-
T Consensus 72 adivvitaG 80 (312)
T cd05293 72 SKVVIVTAG 80 (312)
T ss_pred CCEEEECCC
Confidence 899998543
No 480
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=68.44 E-value=15 Score=35.26 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=42.0
Q ss_pred EEEEeecccHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE----EEEccccccc--cc--
Q 038076 144 IAIYGLGGGTAAHLMLDL---WPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ----VHIGDVFSPS--ED-- 212 (345)
Q Consensus 144 VLiIG~G~G~~~~~l~~~---~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~----v~~gDa~~~l--~~-- 212 (345)
||+-| |+|+++..|.++ +...++..+|.|+.-+-.-++.+.-. ..+++++ .+.+|.++.- ..
T Consensus 1 VLVTG-a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~------~~~~~v~~~~~~vigDvrd~~~l~~~~ 73 (293)
T PF02719_consen 1 VLVTG-AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR------FPDPKVRFEIVPVIGDVRDKERLNRIF 73 (293)
T ss_dssp EEEET-TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH------C--TTCEEEEE--CTSCCHHHHHHHHT
T ss_pred CEEEc-cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc------ccccCcccccCceeecccCHHHHHHHH
Confidence 45555 568887777664 23379999999998777666655200 0134454 4589998852 22
Q ss_pred CCCcccEEEEcC
Q 038076 213 ASGRYAGIVVDL 224 (345)
Q Consensus 213 ~~~~yD~Ii~D~ 224 (345)
...+.|+||.-+
T Consensus 74 ~~~~pdiVfHaA 85 (293)
T PF02719_consen 74 EEYKPDIVFHAA 85 (293)
T ss_dssp T--T-SEEEE--
T ss_pred hhcCCCEEEECh
Confidence 345899999854
No 481
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=68.34 E-value=38 Score=33.99 Aligned_cols=99 Identities=10% Similarity=-0.033 Sum_probs=55.9
Q ss_pred CCCCEEEEeec-cc-HHHHHHHHhCCCCEEEEEECCHHHHH-HHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCc
Q 038076 140 PNGPIAIYGLG-GG-TAAHLMLDLWPSLKLEGWEIDEILID-KVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGR 216 (345)
Q Consensus 140 ~p~~VLiIG~G-~G-~~~~~l~~~~p~~~v~~VEidp~vi~-~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~ 216 (345)
+.++|+++|+| -| ..+..+. ..+..+|++++.+++-.+ .+++ ++. . .+-..|..+. -..
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~-~~G~~~V~v~~rs~~ra~~la~~-~g~-----------~-~i~~~~l~~~----l~~ 240 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLL-RKGVGKILIANRTYERAEDLAKE-LGG-----------E-AVKFEDLEEY----LAE 240 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHH-HCCCCEEEEEeCCHHHHHHHHHH-cCC-----------e-EeeHHHHHHH----Hhh
Confidence 45789999987 23 2333333 344478999999987644 5444 321 0 1111232222 246
Q ss_pred ccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCC
Q 038076 217 YAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGID 261 (345)
Q Consensus 217 yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~ 261 (345)
+|+||.-... +.++.+.+.++.+... ++++.+++.+..+.
T Consensus 241 aDvVi~aT~s----~~~ii~~e~l~~~~~~-~~~~~~viDla~Pr 280 (417)
T TIGR01035 241 ADIVISSTGA----PHPIVSKEDVERALRE-RTRPLFIIDIAVPR 280 (417)
T ss_pred CCEEEECCCC----CCceEcHHHHHHHHhc-CCCCeEEEEeCCCC
Confidence 9999974322 3445677777664322 23567888887543
No 482
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=68.25 E-value=17 Score=32.52 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=22.1
Q ss_pred CCCEEEEeecc-cH-HHHHHHHhCCCCEEEEEECCH
Q 038076 141 NGPIAIYGLGG-GT-AAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 141 p~~VLiIG~G~-G~-~~~~l~~~~p~~~v~~VEidp 174 (345)
..+|+++|+|+ |+ ++..|. ..+-.+++.+|-|.
T Consensus 19 ~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d~ 53 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHRL 53 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence 57999999984 33 333333 33447899999774
No 483
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=67.63 E-value=12 Score=37.28 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=33.1
Q ss_pred cCCCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Q 038076 138 IVPNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVR 181 (345)
Q Consensus 138 ~~~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~ 181 (345)
+.+..+||.|.+||.....++.+ .| .+|++||+||.-..+.+
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~-~P-~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLA-GP-KRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhc-CC-ceEEEEeCCHHHHHHHH
Confidence 45667899999998888877765 24 89999999998776543
No 484
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=67.50 E-value=50 Score=26.05 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=48.0
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcccE
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYAG 219 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD~ 219 (345)
+.++||++|+|.-...+.-.-...+.+|+++..+. +..+ .+++++..+..+. -..+|+
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~---------------~~i~~~~~~~~~~----l~~~~l 63 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSE---------------GLIQLIRREFEED----LDGADL 63 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHH---------------TSCEEEESS-GGG----CTTESE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhh---------------hHHHHHhhhHHHH----HhhheE
Confidence 56899999987554443322223468999999876 2222 1355554443322 356899
Q ss_pred EEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecCCCC
Q 038076 220 IVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGGIDG 262 (345)
Q Consensus 220 Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~~~~ 262 (345)
|+....+ .+.=+.+++..+.-|+++ |+...+.
T Consensus 64 V~~at~d----------~~~n~~i~~~a~~~~i~v-n~~D~p~ 95 (103)
T PF13241_consen 64 VFAATDD----------PELNEAIYADARARGILV-NVVDDPE 95 (103)
T ss_dssp EEE-SS-----------HHHHHHHHHHHHHTTSEE-EETT-CC
T ss_pred EEecCCC----------HHHHHHHHHHHhhCCEEE-EECCCcC
Confidence 9974322 223334444445577775 5554443
No 485
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.33 E-value=16 Score=36.14 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECC
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEID 173 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEid 173 (345)
...+|+++|+|| |+.....+...+-.+++.||-|
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 568999999983 5544444444455799999988
No 486
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.20 E-value=14 Score=34.88 Aligned_cols=122 Identities=16% Similarity=0.044 Sum_probs=78.1
Q ss_pred CCCCEEEEeecccHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEE-EEEcccccccc---cC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWP--SLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQ-VHIGDVFSPSE---DA 213 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p--~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~-v~~gDa~~~l~---~~ 213 (345)
...+||.+|=|.-+.+..+..++. ...|++.++|....++-++|-.-.+.- .....-... ++.-|+.+.-. -.
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv-~~Lk~lG~~I~h~Vdv~sl~~~~~~~ 134 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENV-EALKRLGGTILHGVDVTSLKFHADLR 134 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHH-HHHHHcCCceEecccceeEEeccccc
Confidence 467899999999999999888765 478999999998888777765322100 000111122 23334444221 13
Q ss_pred CCcccEEEEcCCCCCCCCC-----------CcchHHHHHHHHhccC-CCcEEEEEecCCCC
Q 038076 214 SGRYAGIVVDLFSEGKVLP-----------QLEEVATWLKLKDRLM-PNGRFMVNCGGIDG 262 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~-----------~l~t~ef~~~~~~~L~-pgGvlvvn~~~~~~ 262 (345)
-++||-||-..+..+.-+. .-.-..|++.++.+|+ ..|.+.+..-...+
T Consensus 135 ~~~~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P 195 (282)
T KOG4174|consen 135 LQRYDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYP 195 (282)
T ss_pred ccccceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCC
Confidence 5899999987555433111 1123579999999999 89998886655544
No 487
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=66.72 E-value=9 Score=37.80 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.9
Q ss_pred CCCEEEEeec-ccHHHH-HHHHhC--CCCEEEEEECCHHHHHH
Q 038076 141 NGPIAIYGLG-GGTAAH-LMLDLW--PSLKLEGWEIDEILIDK 179 (345)
Q Consensus 141 p~~VLiIG~G-~G~~~~-~l~~~~--p~~~v~~VEidp~vi~~ 179 (345)
...|++||+| .|+... +|.++. .+.+|.+||-|....+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqs 128 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQS 128 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccccc
Confidence 4579999976 455444 444432 34899999988765554
No 488
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.50 E-value=15 Score=33.08 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=36.9
Q ss_pred CCCCCEEEEeeccc--HHHHHHHHhCCCCEEEEEEC--CHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCC
Q 038076 139 VPNGPIAIYGLGGG--TAAHLMLDLWPSLKLEGWEI--DEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDAS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G~G--~~~~~l~~~~p~~~v~~VEi--dp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~ 214 (345)
...++||+||+|.= ..++.|++. +.+|++|+. .+++.+.+.+ .++.+.. +.|....-
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~--------------~~i~~~~---~~~~~~~l 68 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE--------------GKIRWKQ---KEFEPSDI 68 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC--------------CCEEEEe---cCCChhhc
Confidence 36789999998732 334455553 478888853 3444443322 2344432 23322233
Q ss_pred CcccEEEEc
Q 038076 215 GRYAGIVVD 223 (345)
Q Consensus 215 ~~yD~Ii~D 223 (345)
..+|+||.-
T Consensus 69 ~~adlViaa 77 (202)
T PRK06718 69 VDAFLVIAA 77 (202)
T ss_pred CCceEEEEc
Confidence 578988873
No 489
>PRK08328 hypothetical protein; Provisional
Probab=66.36 E-value=8 Score=35.60 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCCCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCH
Q 038076 140 PNGPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 140 ~p~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp 174 (345)
...+|+++|+|| |+.....+...+-.+++.||-|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 467999999983 55444444455567999998653
No 490
>PRK13699 putative methylase; Provisional
Probab=66.27 E-value=10 Score=34.84 Aligned_cols=44 Identities=18% Similarity=0.131 Sum_probs=37.7
Q ss_pred CCCCEEEEeecccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhcC
Q 038076 140 PNGPIAIYGLGGGTAAHLMLDLWPSLKLEGWEIDEILIDKVRDYFG 185 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~ 185 (345)
+..-||+-=+|+|+.+.+..+. +-+..++||+|+..++|.+.+.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHH
Confidence 4567999999999999888764 5688999999999999988774
No 491
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=66.06 E-value=2.3 Score=40.86 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=69.9
Q ss_pred CCCCEEEEeecccHHHH-HHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCccc
Q 038076 140 PNGPIAIYGLGGGTAAH-LMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRYA 218 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~-~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~yD 218 (345)
...-|.++=.|-|+++. .+.+ .....|.++|++|..++.-|+...... -..|..+++||-|.. ......|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~------V~~r~~i~~gd~R~~--~~~~~Ad 264 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANN------VMDRCRITEGDNRNP--KPRLRAD 264 (351)
T ss_pred ccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcc------hHHHHHhhhcccccc--Cccccch
Confidence 44678889899998887 4443 456899999999999999998876442 367888999998874 3456788
Q ss_pred EEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcE
Q 038076 219 GIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGR 252 (345)
Q Consensus 219 ~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGv 252 (345)
-|.+.+ +|. +++-|-.+.+.|+|.|-
T Consensus 265 rVnLGL-----lPS---se~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 265 RVNLGL-----LPS---SEQGWPTAIKALKPEGG 290 (351)
T ss_pred heeecc-----ccc---cccchHHHHHHhhhcCC
Confidence 887733 231 24557777788988554
No 492
>PRK06223 malate dehydrogenase; Reviewed
Probab=66.00 E-value=54 Score=31.14 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=25.1
Q ss_pred CCEEEEeecc-cHHHHHHHHhCCCCEEEEEECCHHHHH
Q 038076 142 GPIAIYGLGG-GTAAHLMLDLWPSLKLEGWEIDEILID 178 (345)
Q Consensus 142 ~~VLiIG~G~-G~~~~~l~~~~p~~~v~~VEidp~vi~ 178 (345)
.+|.+||+|. |..........+-.+|..+|++++..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~ 40 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQ 40 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhH
Confidence 5899999985 544444443333129999999998754
No 493
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=65.92 E-value=36 Score=32.39 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCCCCEEEEeec-ccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccccc--CC
Q 038076 139 VPNGPIAIYGLG-GGTAAHLMLDLWPSLK-LEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSED--AS 214 (345)
Q Consensus 139 ~~p~~VLiIG~G-~G~~~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~--~~ 214 (345)
.+..+|++.|+| .|..+..+.+.. +.+ |.+++-++.-.+.+++. +... -+.....+..+-+.. ..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~~---------~v~~~~~~~~~~l~~~~~~ 228 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKAS-GAYPVIVSDPNEYRLELAKKM-GATY---------VVNPFKEDVVKEVADLTDG 228 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCcE---------EEcccccCHHHHHHHhcCC
Confidence 355778875543 233444444544 454 88888899888887663 3211 111111222222211 24
Q ss_pred CcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEE
Q 038076 215 GRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMV 255 (345)
Q Consensus 215 ~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvv 255 (345)
+.+|+|+-.... .+.+..+.+.|+++|.++.
T Consensus 229 ~~~d~vld~~g~----------~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 229 EGVDVFLEMSGA----------PKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred CCCCEEEECCCC----------HHHHHHHHHhhcCCCEEEE
Confidence 568998853211 2457778889999998853
No 494
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=65.87 E-value=49 Score=29.48 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=43.9
Q ss_pred CCCEEEEeecccH---HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccc------
Q 038076 141 NGPIAIYGLGGGT---AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSE------ 211 (345)
Q Consensus 141 p~~VLiIG~G~G~---~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~------ 211 (345)
++++|+.|+++|. +++.+++. +.+|.++.-++.-.+...+.+.. ...++.++..|..+.-.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~--------~~~~~~~~~~Dl~~~~~~~~~~~ 75 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD--GAEVIVVDICGDDAAATAELVEA--------AGGKARARQVDVRDRAALKAAVA 75 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHHH
Confidence 5679999975443 34444442 56899999886544433332211 12458888888765310
Q ss_pred ---cCCCcccEEEEcC
Q 038076 212 ---DASGRYAGIVVDL 224 (345)
Q Consensus 212 ---~~~~~yD~Ii~D~ 224 (345)
..-.+.|+|++..
T Consensus 76 ~~~~~~~~~d~vi~~a 91 (251)
T PRK12826 76 AGVEDFGRLDILVANA 91 (251)
T ss_pred HHHHHhCCCCEEEECC
Confidence 1124789998865
No 495
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=65.81 E-value=23 Score=32.73 Aligned_cols=34 Identities=32% Similarity=0.255 Sum_probs=24.5
Q ss_pred CCCEEEEeec-ccHHHHHHHHhCCCCEEEEEECCH
Q 038076 141 NGPIAIYGLG-GGTAAHLMLDLWPSLKLEGWEIDE 174 (345)
Q Consensus 141 p~~VLiIG~G-~G~~~~~l~~~~p~~~v~~VEidp 174 (345)
..+|+++|+| .|+.....+.+.+-.+++.||-|.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5789999997 455555444445557999999775
No 496
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.63 E-value=28 Score=32.17 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=30.1
Q ss_pred CCEEEEeec--ccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhc
Q 038076 142 GPIAIYGLG--GGTAAHLMLDLW-PSLKLEGWEIDEILIDKVRDYF 184 (345)
Q Consensus 142 ~~VLiIG~G--~G~~~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f 184 (345)
.+|.+||+| |+.+++.+.+.. +..+|.+++.+++-.+..++.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~ 48 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY 48 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc
Confidence 368999988 456666666531 2267999999998877666544
No 497
>PRK06194 hypothetical protein; Provisional
Probab=65.60 E-value=49 Score=30.48 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=45.2
Q ss_pred CCCEEEEeecccH---HHHHHHHhCCCCEEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEccccccc--cc---
Q 038076 141 NGPIAIYGLGGGT---AAHLMLDLWPSLKLEGWEIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPS--ED--- 212 (345)
Q Consensus 141 p~~VLiIG~G~G~---~~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l--~~--- 212 (345)
.+++|+.|+++|. +++.+++ .+.+|++++.+++-.+...+.... .+.++.++.+|..+.- +.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~D~~d~~~~~~~~~ 75 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAA--LGMKLVLADVQQDALDRAVAELRA--------QGAEVLGVRTDVSDAAQVEALAD 75 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHH--CCCEEEEEeCChHHHHHHHHHHHh--------cCCeEEEEECCCCCHHHHHHHHH
Confidence 4678888866442 3333333 367899999987765544333221 1346888999987631 11
Q ss_pred ----CCCcccEEEEcCC
Q 038076 213 ----ASGRYAGIVVDLF 225 (345)
Q Consensus 213 ----~~~~yD~Ii~D~f 225 (345)
...+.|+|+..+-
T Consensus 76 ~~~~~~g~id~vi~~Ag 92 (287)
T PRK06194 76 AALERFGAVHLLFNNAG 92 (287)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1246899998653
No 498
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=65.39 E-value=10 Score=29.86 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=27.0
Q ss_pred CCcccEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEEEEecC
Q 038076 214 SGRYAGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFMVNCGG 259 (345)
Q Consensus 214 ~~~yD~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlvvn~~~ 259 (345)
+..||++|+|++++ ++.+.+..+...++-||++++-+..
T Consensus 9 G~e~~~~i~d~~~g-------~~pnal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 9 GQEFDLLIFDAFEG-------FDPNALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp T--BSSEEEE-SS----------HHHHHHHHTTB-TT-EEEEEES-
T ss_pred CCccCEEEEEccCC-------CCHHHHHHHhcceecCeEEEEEcCC
Confidence 67899999999775 5578999999999999999987664
No 499
>PLN02688 pyrroline-5-carboxylate reductase
Probab=65.35 E-value=36 Score=31.41 Aligned_cols=86 Identities=10% Similarity=0.093 Sum_probs=53.1
Q ss_pred CEEEEeec--ccHHHHHHHHhC--CCCEEEEE-ECCHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEcccccccccCCCcc
Q 038076 143 PIAIYGLG--GGTAAHLMLDLW--PSLKLEGW-EIDEILIDKVRDYFGLSDLEKPTATGGVLQVHIGDVFSPSEDASGRY 217 (345)
Q Consensus 143 ~VLiIG~G--~G~~~~~l~~~~--p~~~v~~V-Eidp~vi~~A~~~f~~~~~~~~~~~~~rv~v~~gDa~~~l~~~~~~y 217 (345)
+|.+||+| |+.+++.+++.. +..+|+++ +.+++..+.+.++ + +++ ..|..+. -+..
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-g-------------~~~-~~~~~e~----~~~a 62 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-G-------------VKT-AASNTEV----VKSS 62 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-C-------------CEE-eCChHHH----HhcC
Confidence 58899988 567777777641 23478888 9999887765542 2 221 1222222 2457
Q ss_pred cEEEEcCCCCCCCCCCcchHHHHHHHHhccCCCcEEE
Q 038076 218 AGIVVDLFSEGKVLPQLEEVATWLKLKDRLMPNGRFM 254 (345)
Q Consensus 218 D~Ii~D~f~~~~~p~~l~t~ef~~~~~~~L~pgGvlv 254 (345)
|+||+-+. + ....+.+..+...++++.+++
T Consensus 63 DvVil~v~-~------~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 63 DVIILAVK-P------QVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred CEEEEEEC-c------HHHHHHHHHHHhhcCCCCEEE
Confidence 99998652 1 124566777777777776655
No 500
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=65.12 E-value=11 Score=36.92 Aligned_cols=34 Identities=15% Similarity=-0.006 Sum_probs=25.7
Q ss_pred CCCCEEEEeecccHHHH--HHHHhCCCCEEEEEECC
Q 038076 140 PNGPIAIYGLGGGTAAH--LMLDLWPSLKLEGWEID 173 (345)
Q Consensus 140 ~p~~VLiIG~G~G~~~~--~l~~~~p~~~v~~VEid 173 (345)
.--+||++|+|+|.++. .+.+..+..+|-.||..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 34579999999886654 45566788899999973
Done!