BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038078
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H8T0|RGP1_ORYSJ UDP-arabinopyranose mutase 1 OS=Oryza sativa subsp. japonica
GN=UAM1 PE=1 SV=1
Length = 364
Score = 308 bits (789), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 142/165 (86%), Positives = 154/165 (93%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+T+PKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 199 YVDAVMTVPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICD 258
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQEDIIPFFQ T+PKEC TVQ+CY+
Sbjct: 259 HLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNATIPKECDTVQKCYLS 318
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAAVANGKA 165
L++QV+EKL K+DPYF KLADAMVTWIEAWDELNP+ AAV NGKA
Sbjct: 319 LAEQVREKLGKIDPYFVKLADAMVTWIEAWDELNPSTAAVENGKA 363
>sp|P80607|UPTG_MAIZE Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG
PE=1 SV=2
Length = 364
Score = 304 bits (779), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 143/165 (86%), Positives = 151/165 (91%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 199 YVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICD 258
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQEDIIPFFQ VT+PK+C TVQ+CYI
Sbjct: 259 HLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNVTIPKDCDTVQKCYIY 318
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAAVANGKA 165
LS QVKEKL +DPYF KL DAMVTWIEAWDELNP+ A ANGKA
Sbjct: 319 LSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNPSTPAAANGKA 363
>sp|Q8RU27|UPTG2_SOLTU Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum
tuberosum GN=UPTG2 PE=1 SV=1
Length = 366
Score = 302 bits (774), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 139/161 (86%), Positives = 150/161 (93%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 193 YVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICD 252
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL LGVKTGLPYI+HSKASNPFVNLKKEYKGI+WQE+IIPF Q+ TLPK+CT+VQ+CY+E
Sbjct: 253 HLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEEIIPFSQSATLPKDCTSVQQCYLE 312
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAAVA 161
LSKQVKEKLS +DPYF KLADAMVTWIEAWDELNP G +A
Sbjct: 313 LSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELNPTGEGLA 353
>sp|Q9LFW1|RGP2_ARATH UDP-arabinopyranose mutase 2 OS=Arabidopsis thaliana GN=RGP2 PE=1
SV=1
Length = 360
Score = 298 bits (763), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 142/165 (86%), Positives = 149/165 (90%), Gaps = 3/165 (1%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 199 YVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICD 258
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL+LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQE+IIPFFQ L KE TVQ+CYIE
Sbjct: 259 HLSLGVKTGLPYIYHSKASNPFVNLKKEYKGIFWQEEIIPFFQNAKLSKEAVTVQQCYIE 318
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAAVANGKA 165
LSK VKEKLS +DPYFDKLADAMVTWIEAWDELNP A+ GKA
Sbjct: 319 LSKMVKEKLSSLDPYFDKLADAMVTWIEAWDELNPPAAS---GKA 360
>sp|Q9SC19|UPTG1_SOLTU Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum
tuberosum GN=UPTG1 PE=1 SV=2
Length = 365
Score = 298 bits (762), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 138/159 (86%), Positives = 147/159 (92%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD
Sbjct: 189 YVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 248
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL LG+KTGLPYI+HSKASNPFVNLKKEY GIFWQE+IIPFFQA TLPKECTTVQ+CY+E
Sbjct: 249 HLGLGIKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEIIPFFQAATLPKECTTVQQCYLE 308
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAA 159
LSKQVK+KLS +DPYF KL +AMVTWIEAWDELN G
Sbjct: 309 LSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELNLLGTT 347
>sp|Q9SRT9|RGP1_ARATH UDP-arabinopyranose mutase 1 OS=Arabidopsis thaliana GN=RGP1 PE=1
SV=1
Length = 357
Score = 297 bits (760), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 139/159 (87%), Positives = 145/159 (91%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 199 YVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICD 258
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL LGVKTGLPYI+HSKASNPFVNLKKEYKGIFWQEDIIPFFQ+ L KE TVQ+CY+E
Sbjct: 259 HLGLGVKTGLPYIYHSKASNPFVNLKKEYKGIFWQEDIIPFFQSAKLTKEAVTVQQCYME 318
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAA 159
LSK VKEKLS +DPYFDKLADAMVTWIEAWDELNP A
Sbjct: 319 LSKLVKEKLSPIDPYFDKLADAMVTWIEAWDELNPPTKA 357
>sp|Q6Z4G3|RGP3_ORYSJ UDP-arabinopyranose mutase 3 OS=Oryza sativa subsp. japonica
GN=UAM3 PE=1 SV=1
Length = 366
Score = 290 bits (742), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/167 (82%), Positives = 150/167 (89%), Gaps = 2/167 (1%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVI D
Sbjct: 197 YVDAVMTIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVITD 256
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL LGVKTGLPYI+HSKASNPFVNLKKEY GIFWQE++IPFFQ+ +LPKE TVQ+CY+E
Sbjct: 257 HLGLGVKTGLPYIWHSKASNPFVNLKKEYNGIFWQEELIPFFQSASLPKEADTVQKCYLE 316
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAAV--ANGKA 165
L+KQV+ KL KVD YF+KLAD+MVTWIEAWD+LNP AV ANG A
Sbjct: 317 LAKQVRAKLGKVDGYFNKLADSMVTWIEAWDQLNPPKGAVATANGTA 363
>sp|O04300|UPTG_PEA Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum
GN=UPTG PE=1 SV=1
Length = 364
Score = 289 bits (740), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 133/154 (86%), Positives = 144/154 (93%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
+VD VLTIPKG+LFPMCGMNLAF+R LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 192 FVDAVLTIPKGSLFPMCGMNLAFNRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICD 251
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL GVKTGLPYI+HSKASNPFVNLKKEYKGIFWQE+IIPFFQA TL K+CT+VQ+CYIE
Sbjct: 252 HLGYGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIE 311
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELN 154
LSKQVKEKL +DPYF KLADAMVTW+EAWDE+N
Sbjct: 312 LSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEIN 345
>sp|O22666|RGP3_ARATH UDP-arabinopyranose mutase 3 OS=Arabidopsis thaliana GN=RGP3 PE=1
SV=2
Length = 362
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/163 (80%), Positives = 143/163 (87%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPKGTLFPMCGMNLAFDR LIGPAMYFGLMGDGQPIGRYDDMWAGWC KVICD
Sbjct: 195 YVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCVKVICD 254
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
H+ GVKTGLPYI+HSKASNPFVNLKKEY GIFWQE+ IPFFQ+VTLPKECT+VQ+CY+E
Sbjct: 255 HMGWGVKTGLPYIWHSKASNPFVNLKKEYNGIFWQEEAIPFFQSVTLPKECTSVQQCYLE 314
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAGAAVANG 163
L+K V+EKL KVDPYF LA MVTWIEAW+ELN A A
Sbjct: 315 LAKLVREKLGKVDPYFITLATGMVTWIEAWEELNSAEGTEAEA 357
>sp|Q9LUE6|RGP4_ARATH Probable UDP-arabinopyranose mutase 4 OS=Arabidopsis thaliana
GN=RGP4 PE=1 SV=1
Length = 364
Score = 259 bits (661), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 115/155 (74%), Positives = 134/155 (86%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICD 60
YVD V+TIPK L+PMCGMNLAF+R L+GPAMYFGLMG+GQPI RYDDMWAGW KV+CD
Sbjct: 195 YVDAVMTIPKRVLYPMCGMNLAFNRELVGPAMYFGLMGEGQPISRYDDMWAGWAAKVVCD 254
Query: 61 HLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIE 120
HL GVKTGLPY++HSKASNPFVNLKKE+KG+ WQED++PFFQ + L KE T +CY+E
Sbjct: 255 HLGFGVKTGLPYLWHSKASNPFVNLKKEHKGLHWQEDMVPFFQNLRLSKESDTAAKCYME 314
Query: 121 LSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 155
+S KEKL+KVDPYF+KLADAMV WIEAW+ELNP
Sbjct: 315 ISNMTKEKLTKVDPYFEKLADAMVVWIEAWEELNP 349
>sp|Q9FFD2|RGP5_ARATH Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana
GN=RGP5 PE=1 SV=1
Length = 348
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%), Gaps = 3/160 (1%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYD---DMWAGWCTKV 57
YVD V+T+P + P+ G+N+AF+R L+GPA+ L G+ R++ D+W G C K
Sbjct: 189 YVDAVMTVPAKAMLPISGINIAFNRELVGPALVPALRLAGEGKVRWETLEDVWCGMCLKH 248
Query: 58 ICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQEC 117
I DHL GVKTGLPY++ ++ + +L+K+++G+ E +PFF ++ LP+ V++C
Sbjct: 249 ISDHLGYGVKTGLPYVWRNERGDAVESLRKKWEGMKLMEKSVPFFDSLKLPETALKVEDC 308
Query: 118 YIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAG 157
IEL+K VKE+L DP F + ADAMV W++ W+ +N +
Sbjct: 309 VIELAKAVKEQLGSDDPAFTQAADAMVKWVQLWNSVNSSA 348
>sp|Q7FAY6|RGP2_ORYSJ Probable UDP-arabinopyranose mutase 2 OS=Oryza sativa subsp.
japonica GN=UAM2 PE=1 SV=1
Length = 347
Score = 126 bits (317), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYD---DMWAGWCTKV 57
YVD V+T+P G + P+ G+N+AF+R ++GP M+ L + R+D D+W G C KV
Sbjct: 186 YVDAVMTVPLGAMMPVSGINVAFNREVLGPVMFPALRLRKEGKHRWDTLEDVWNGLCAKV 245
Query: 58 ICDHLNLGVKTGLPYIFHSKA-SNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQE 116
+CD L GVKTGLPY+ S A + + KE++G+ + ++PFF+++ L TV++
Sbjct: 246 VCDRLRYGVKTGLPYVMRSDAEAGKALESLKEWEGVKVMDVVLPFFESLKLSSTSVTVED 305
Query: 117 CYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAW 150
C EL+ VKEKL + F K ADAM W + W
Sbjct: 306 CVKELTSIVKEKLGPQNAIFAKAADAMEEWTKLW 339
>sp|P85413|UPTG_PHODC Alpha-1,4-glucan-protein synthase [UDP-forming] (Fragments)
OS=Phoenix dactylifera PE=1 SV=1
Length = 60
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 43 IGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLK 86
I RY D KVICDHL LGVKTGLPYI+HSKASNPFVNLK
Sbjct: 18 INRYVDAVLT-IPKVICDHLGLGVKTGLPYIWHSKASNPFVNLK 60
>sp|P43635|CISY3_YEAST Citrate synthase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=CIT3 PE=3 SV=1
Length = 486
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 19 MNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNL--GVKTGLPYIFHS 76
+NL L+ +Y + +G P+G+Y + WCT IC L + G + S
Sbjct: 202 LNLIASLPLLTGRIYSNITNEGHPLGQYSE-EVDWCTN-ICSLLGMTNGTNSSNTCNLTS 259
Query: 77 KASNPFVNLKKEYKGI 92
+ S F+NL + Y GI
Sbjct: 260 QQSLDFINLMRLYTGI 275
>sp|Q822I4|EFTU_CHLCV Elongation factor Tu OS=Chlamydophila caviae (strain GPIC) GN=tuf
PE=3 SV=3
Length = 394
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 2 VDMVLTIPKGTLFPMCGMNLAFDRHLIGP-----AMYFGLMGDGQPIGRYDDMWAGWCTK 56
V V+T+P+GT M G N+ F+ LI P M F + G+ IG AG +K
Sbjct: 338 VTGVVTLPEGTEMVMPGDNVEFEVQLISPVALEEGMRFAIREGGRTIG------AGTISK 391
Query: 57 VIC 59
+I
Sbjct: 392 IIA 394
>sp|Q5L5H6|EFTU_CHLAB Elongation factor Tu OS=Chlamydophila abortus (strain S26/3) GN=tuf
PE=3 SV=1
Length = 394
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 2 VDMVLTIPKGTLFPMCGMNLAFDRHLIGP-----AMYFGLMGDGQPIGRYDDMWAGWCTK 56
V V+T+P+G M G N+ FD LI P M F + G+ IG AG +K
Sbjct: 338 VTGVVTLPEGVEMVMPGDNVEFDVQLISPVALEEGMRFAIREGGRTIG------AGTISK 391
Query: 57 VIC 59
+I
Sbjct: 392 IIA 394
>sp|Q65MR2|DNLJ_BACLD DNA ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580)
GN=ligA PE=3 SV=1
Length = 667
Score = 33.1 bits (74), Expect = 0.85, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 120 ELSKQVKEKLSKVDPYFDKLADAMVTWIE 148
+L K KE+L +VD DK+ADA+VT+ E
Sbjct: 531 KLKKATKEELIEVDEIGDKMADALVTYFE 559
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 18/89 (20%)
Query: 49 MWAGWCTKVICDHLN---LGVKTGL--PYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQ 103
W G + C+++N +G KT L + S + F E GI PF +
Sbjct: 103 QWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFA----ESYGI-------PFIE 151
Query: 104 AVTLPKECTTVQECYIELSKQVKEKLSKV 132
T K T V+EC+I +++ +K +L+ +
Sbjct: 152 --TSAKNATNVEECFISMARDIKNRLADI 178
>sp|A4G3R1|COBB_HERAR Cobyrinic acid A,C-diamide synthase OS=Herminiimonas arsenicoxydans
GN=cobB PE=3 SV=1
Length = 438
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 106 TLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNP 155
TLPK+ + E ++ L + +++++VD D+LAD + + AWD + P
Sbjct: 175 TLPKQQQALPERHLGLVQ--PDEIAQVDQVLDQLADQIEIDMVAWDAIAP 222
>sp|A6RMZ2|SPB4_BOTFB ATP-dependent rRNA helicase spb4 OS=Botryotinia fuckeliana (strain
B05.10) GN=spb4 PE=3 SV=1
Length = 626
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 95 QEDIIPFFQ-------AVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWI 147
+ED IPF + + P+ TT + I +SK KE LS Y DK A V+W+
Sbjct: 404 EEDYIPFLEIRKTPITPLKRPEISTTGEAAKILISKMRKEVLSDRALY-DKGQRAFVSWV 462
Query: 148 EAWDE 152
+A+ +
Sbjct: 463 QAYSK 467
>sp|A7F2S3|SPB4_SCLS1 ATP-dependent rRNA helicase spb4 OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=spb4 PE=3 SV=1
Length = 625
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 95 QEDIIPFFQ----AVTL---PKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWI 147
+ED IPF + +TL P+ TT I +SK KE L+ Y DK A V+W+
Sbjct: 403 EEDYIPFLEIRKTPITLFKRPEISTTDDAAKILISKMRKEVLADRALY-DKGQRAFVSWV 461
Query: 148 EAWDE 152
+A+ +
Sbjct: 462 QAYSK 466
>sp|Q971B5|SYP_SULTO Proline--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM
10545 / NBRC 100140 / 7) GN=proS PE=3 SV=1
Length = 483
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 72 YIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSK 131
+ + +KA+ P + L++ +T KE T+ E Y + ++QV E ++
Sbjct: 141 FRYETKATRPMMRLRE-----------------ITTFKEAHTLHETYEDAARQVDEAINI 183
Query: 132 VDPYFDKLA-DAMVTWIEAWDELNPAGAAVA 161
+FD+L M++ WD+ A +A
Sbjct: 184 YKAFFDELGIPYMISKRPEWDKFAGAEYTIA 214
>sp|A8FAQ1|DNLJ_BACP2 DNA ligase OS=Bacillus pumilus (strain SAFR-032) GN=ligA PE=3 SV=1
Length = 668
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 120 ELSKQVKEKLSKVDPYFDKLADAMVTWIE 148
+L + KE+L +VD +K+ADA+VT+ E
Sbjct: 532 QLKQATKEQLLEVDEIGEKMADAVVTYFE 560
>sp|Q9P4B9|RPAB1_KLUMA DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Kluyveromyces marxianus GN=RPB5 PE=3 SV=1
Length = 215
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 32 MYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKG 91
M F + I ++ +M + W CD ++GVKT ++ H + K G
Sbjct: 58 MSFQSNPTEESIEKFPEMGSLWVE--FCDEASVGVKTMKNFVVH-------ITEKNFQTG 108
Query: 92 IF-WQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADA 142
IF +Q I P + LP V E + E S V ++ P +L+DA
Sbjct: 109 IFIYQSGITPSANKI-LPTAAPAVIETFPEASLVVNITHHELVPKHIRLSDA 159
>sp|Q826Q0|DEF2_STRAW Peptide deformylase 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=def2 PE=3 SV=1
Length = 186
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 4 MVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLN 63
+VL P+G L + G+ +R+ A+ G DG+P+ W C + CDHL+
Sbjct: 96 VVLRGPEGCLS-LPGLEAGTERY--DRAVVEGFTTDGEPVRVLGTGWFARCLQHECDHLD 152
Query: 64 LGV 66
GV
Sbjct: 153 GGV 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,801,655
Number of Sequences: 539616
Number of extensions: 2738377
Number of successful extensions: 5810
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5791
Number of HSP's gapped (non-prelim): 27
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)