Query 038078
Match_columns 165
No_of_seqs 85 out of 87
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038078.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038078hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03180 reversibly glycosylat 100.0 1.7E-75 3.7E-80 512.5 13.2 156 1-156 190-345 (346)
2 PF03214 RGP: Reversibly glyco 100.0 5.5E-69 1.2E-73 471.1 13.6 157 1-157 188-347 (348)
3 PF03385 DUF288: Protein of un 99.7 3.6E-16 7.8E-21 139.6 9.5 106 45-155 1-109 (390)
4 PF09039 HTH_Tnp_Mu_2: Mu DNA 65.5 7.9 0.00017 29.4 3.2 36 93-128 30-65 (108)
5 COG4003 Uncharacterized protei 51.8 38 0.00082 25.6 4.7 47 81-135 11-66 (98)
6 PF05573 NosL: NosL; InterPro 49.3 6.1 0.00013 31.0 0.2 43 5-51 19-61 (149)
7 PF15494 SRCR_2: Scavenger rec 42.3 27 0.00058 25.2 2.7 28 48-75 22-49 (98)
8 PF14353 CpXC: CpXC protein 39.9 15 0.00031 27.7 1.0 44 50-93 32-75 (128)
9 PF11376 DUF3179: Protein of u 39.0 9.1 0.0002 33.3 -0.3 27 12-38 63-89 (266)
10 PF03993 DUF349: Domain of Unk 35.5 1.1E+02 0.0024 20.4 4.8 37 118-156 36-72 (77)
11 KOG2492 CDK5 activator-binding 34.3 26 0.00057 33.4 1.9 46 57-103 417-465 (552)
12 PF06056 Terminase_5: Putative 32.3 14 0.00031 25.0 -0.1 19 50-68 11-29 (58)
13 KOG4153 Fructose 1,6-bisphosph 32.3 35 0.00075 30.9 2.3 43 67-109 98-144 (358)
14 PLN00211 predicted protein; Pr 31.3 17 0.00038 25.3 0.2 12 48-59 5-16 (61)
15 COG1093 SUI2 Translation initi 31.1 1.1E+02 0.0025 27.1 5.2 99 49-156 46-170 (269)
16 PF13632 Glyco_trans_2_3: Glyc 30.3 46 0.001 25.3 2.4 65 11-85 67-132 (193)
17 PRK11621 twin-argninine leader 26.6 1.6E+02 0.0035 24.4 5.2 22 133-154 172-193 (204)
18 PF13641 Glyco_tranf_2_3: Glyc 25.7 75 0.0016 24.5 2.9 62 13-86 156-219 (228)
19 cd06434 GT2_HAS Hyaluronan syn 25.6 1.4E+02 0.003 23.1 4.4 67 14-85 150-221 (235)
20 PF15172 Prolactin_RP: Prolact 23.0 34 0.00073 22.9 0.4 17 28-47 15-32 (47)
21 PF15408 PH_7: Pleckstrin homo 23.0 63 0.0014 24.7 1.9 18 135-152 78-95 (104)
22 PF06170 DUF983: Protein of un 21.6 35 0.00075 25.0 0.3 23 13-35 10-32 (86)
23 PF14409 Herpeto_peptide: Ribo 21.5 1.3E+02 0.0027 21.0 3.0 22 134-155 20-42 (58)
24 PF08655 DASH_Ask1: DASH compl 20.9 83 0.0018 22.3 2.1 35 94-141 26-60 (66)
No 1
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=1.7e-75 Score=512.52 Aligned_cols=156 Identities=88% Similarity=1.545 Sum_probs=155.0
Q ss_pred CcceeeeccCCceecccCcchhhhhhhhchhhhhcccCCCCccCccchhHHHHHHHHHHHHhcCcceeccceEeecCCCC
Q 038078 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASN 80 (165)
Q Consensus 1 yvd~v~t~p~gt~~Pv~s~NlAf~ReligPA~y~~~mgdg~~~~R~dDIW~G~~~k~i~d~lG~~Vk~G~P~v~h~ka~n 80 (165)
|||||||+|+|||||||||||||+||+|||||||++|+|||+++||||||||||+|+||||||+|||||+|||||||+||
T Consensus 190 yvdavvtip~gt~~pv~~~NlAF~ReligPA~y~g~m~~g~~i~R~dDiWsG~c~K~i~dhLG~gVktG~Pyv~h~k~~n 269 (346)
T PLN03180 190 YVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVICDHLGLGVKTGLPYIWHSKASN 269 (346)
T ss_pred ecccEEeccCCCEeecccchhhhhhhhcchhheecccCCCCcccchhhhHHHHHHHHHHHHhCcceecCCceEecCCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhhhhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHhhCcC
Q 038078 81 PFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPA 156 (165)
Q Consensus 81 ~~~dL~~E~~G~~l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~l~~~~~~f~~~a~~M~~Wi~a~~~l~~~ 156 (165)
+|+||+||++||+||||||||||+++||++|+||++||+|||++||++|++.+|||+++|++|++||+||++||++
T Consensus 270 ~~~dL~~E~~Gi~l~E~i~~ff~~~~l~~~a~t~~~cy~ela~~vk~~l~~~d~~f~~~a~~M~~Wi~~w~~l~~~ 345 (346)
T PLN03180 270 PFVNLKKEYKGIFWQEEIIPFFQSVRLPKEAVTVEDCYIELAKQVKEKLGKVDPYFTKLADAMVTWIEAWKELNSP 345 (346)
T ss_pred HHHHHHhhccCeechHHHHHHHHhccCCcccCcHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=5.5e-69 Score=471.09 Aligned_cols=157 Identities=65% Similarity=1.158 Sum_probs=154.7
Q ss_pred CcceeeeccCCceecccCcchhhhhhhhchhhhhcccCCCCccCccc---hhHHHHHHHHHHHHhcCcceeccceEeecC
Q 038078 1 YVDMVLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYD---DMWAGWCTKVICDHLNLGVKTGLPYIFHSK 77 (165)
Q Consensus 1 yvd~v~t~p~gt~~Pv~s~NlAf~ReligPA~y~~~mgdg~~~~R~d---DIW~G~~~k~i~d~lG~~Vk~G~P~v~h~k 77 (165)
|+|+|||+|+|||||||||||||+||+|||+||+++|++|++++||| |||||||+|+||||||+|||||+|||||+|
T Consensus 188 ~~d~~~~~p~gt~~pv~s~NlAf~Relip~~~~~~~~~~~~~~~R~d~~gDIWsG~f~k~~~d~Lg~~V~~G~P~v~H~~ 267 (348)
T PF03214_consen 188 YVDAVLTIPRGTYLPVCSMNLAFDRELIPPAYYFPMMGNGWGIGRFDRFGDIWSGYFLKVICDHLGHGVKTGLPYVWHNK 267 (348)
T ss_pred ccCceEEecCCCEeecccchhhhhhhhcChheecccccCCCcccccccchhHHHHHHHHHHHHHcCCccccCCceEEecC
Confidence 89999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhhhhhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHhhCcCc
Q 038078 78 ASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAG 157 (165)
Q Consensus 78 a~n~~~dL~~E~~G~~l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~l~~~~~~f~~~a~~M~~Wi~a~~~l~~~~ 157 (165)
+||+|+||+||++|++|||||+||||+++||++|+|+++||+||+++||++|++.||||+++|++|++||+||++|||++
T Consensus 268 a~~~~~dL~~E~~Gi~l~E~i~~f~q~v~Ls~~A~t~~dcy~ELA~~VkekLg~~dp~F~kvAdaMv~WI~AW~~lns~~ 347 (348)
T PF03214_consen 268 AHNAFDDLKKEVPGIELNEDILPFFQSVKLSKTAVTVEDCYRELAKQVKEKLGSVDPYFTKVADAMVAWIKAWKELNSGS 347 (348)
T ss_pred CCchHHHHHhhccchhhHHHHHHHHhccCCCcccccHHHHHHHHHHHHHHhccCcChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=99.66 E-value=3.6e-16 Score=139.64 Aligned_cols=106 Identities=15% Similarity=0.273 Sum_probs=97.4
Q ss_pred ccchhHHHHHHHHHHHHhcCcceeccceEeecCC-CCcccchhhhhhhhhhhhchHHHhhhcCCCCC-CCcHHHHHHHHH
Q 038078 45 RYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKA-SNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKE-CTTVQECYIELS 122 (165)
Q Consensus 45 R~dDIW~G~~~k~i~d~lG~~Vk~G~P~v~h~ka-~n~~~dL~~E~~G~~l~e~i~~~~~~~~l~~~-a~t~~~cy~ela 122 (165)
|..|||+||++|||.+..|+.|.|..|.|+|.|| |+.+.||+.|.+++.-...++.||.+++.+.. +.++++|.++|+
T Consensus 1 RvTDIWRSY~aQRLLW~~G~~VsF~PpnV~Q~RNaHdYLkDF~DEk~LY~~sG~LV~FL~~W~~~~~n~~~L~~~Il~L~ 80 (390)
T PF03385_consen 1 RVTDIWRSYWAQRLLWLSGGTVSFVPPNVVQFRNAHDYLKDFKDEKDLYEDSGRLVEFLHEWRCSKGNSSTLFECILDLY 80 (390)
T ss_pred CchhHHHHHHHHHHHHHcCCeEEEcCCceeecccccccccchHHHHHHHHhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Confidence 7899999999999999999999999999999998 99999999999999999999999999988764 567999999999
Q ss_pred HHHHHHhccCchHHHHH-HHHHHHHHHHHHhhCc
Q 038078 123 KQVKEKLSKVDPYFDKL-ADAMVTWIEAWDELNP 155 (165)
Q Consensus 123 ~~vk~~l~~~~~~f~~~-a~~M~~Wi~a~~~l~~ 155 (165)
..+.+. + |+.+. +++|++|+++|+++|=
T Consensus 81 ~~m~e~-G----fW~~~Dv~L~~AWL~DL~sVGY 109 (390)
T PF03385_consen 81 VAMAEE-G----FWGEEDVKLMQAWLQDLKSVGY 109 (390)
T ss_pred HHHHHc-C----CCcHHHHHHHHHHHHHHHHHHh
Confidence 998762 3 66665 9999999999999994
No 4
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=65.53 E-value=7.9 Score=29.43 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=27.3
Q ss_pred hhhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH
Q 038078 93 FWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEK 128 (165)
Q Consensus 93 ~l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~ 128 (165)
...|++|.||.+-=|-.+..++..||..+.+.-+++
T Consensus 30 ~~~~eaw~~fksdYLr~e~Ps~~~cyrr~~~~a~~~ 65 (108)
T PF09039_consen 30 EIDEEAWEFFKSDYLRPEKPSFSACYRRLKRAAKEN 65 (108)
T ss_dssp -S-HHHHHHHHHHHTSTT---HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHc
Confidence 467899999999878999999999999999887664
No 5
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.81 E-value=38 Score=25.65 Aligned_cols=47 Identities=26% Similarity=0.373 Sum_probs=30.5
Q ss_pred cccchhhhhhhhhhh---------hchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHhccCchH
Q 038078 81 PFVNLKKEYKGIFWQ---------EDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPY 135 (165)
Q Consensus 81 ~~~dL~~E~~G~~l~---------e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~l~~~~~~ 135 (165)
-|-+|.+|+.|+.|+ .-+++||+-+ +|-+++..-|-..+|+ |.++|=
T Consensus 11 ~fp~l~~eleg~~l~~~~~~~gy~PtV~D~L~rC------dT~EEAlEii~yleKr--GEi~~E 66 (98)
T COG4003 11 KFPALAKELEGIRLEPKIDFSGYNPTVIDFLRRC------DTEEEALEIINYLEKR--GEITPE 66 (98)
T ss_pred HhHHHHHHhhcccccccCCcCCCCchHHHHHHHh------CcHHHHHHHHHHHHHh--CCCCHH
Confidence 467899999999994 4578888874 5655554444444333 556554
No 6
>PF05573 NosL: NosL; InterPro: IPR008719 NosL is one of the accessory proteins of the nos (nitrous oxide reductase) gene cluster. NosL is a monomeric protein of 18,540 MW that specifically and stoichiometrically binds Cu(I). The copper ion in NosL is ligated by a Cys residue, and one Met and one His are thought to serve as the other ligands. It is possible that NosL is a copper chaperone involved in metallocentre assembly []. This entry also contains HTH-type transcriptional repressors, including YcnK. YcnK may act as a negative transcriptional regulator of YcnJ in the presence of copper and may use copper as a corepressor. The gene, ycnK, is significantly induced under copper-limiting conditions.; PDB: 2HQ3_A 2HPU_A.
Probab=49.34 E-value=6.1 Score=30.95 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=10.7
Q ss_pred eeeccCCceecccCcchhhhhhhhchhhhhcccCCCCccCccchhHH
Q 038078 5 VLTIPKGTLFPMCGMNLAFDRHLIGPAMYFGLMGDGQPIGRYDDMWA 51 (165)
Q Consensus 5 v~t~p~gt~~Pv~s~NlAf~ReligPA~y~~~mgdg~~~~R~dDIW~ 51 (165)
-.++.++..||+|+|++.=++ +|+- +.-.-+|++.-.|+||.+
T Consensus 19 p~~~~~~~~C~~CgM~i~d~p---~~~a-qi~~~~g~~~~~Fdsi~c 61 (149)
T PF05573_consen 19 PVEIDEDDRCPVCGMVISDYP---GFAA-QIIYKDGEKVYKFDSIGC 61 (149)
T ss_dssp ---------------------------E-EEEETT-SSEEEES-HHH
T ss_pred CccCCCCCccCCCCCEeccCC---CccE-EEEECCCCEEEEECCHHH
Confidence 356778899999999996322 1111 222345557899999987
No 7
>PF15494 SRCR_2: Scavenger receptor cysteine-rich domain
Probab=42.32 E-value=27 Score=25.18 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHhcCcceeccceEee
Q 038078 48 DMWAGWCTKVICDHLNLGVKTGLPYIFH 75 (165)
Q Consensus 48 DIW~G~~~k~i~d~lG~~Vk~G~P~v~h 75 (165)
|=|..-..+.+|..||+.=.+-...+-.
T Consensus 22 d~W~~~~s~~~C~qLGy~~~~~~~~~~~ 49 (98)
T PF15494_consen 22 DNWNEALSKAACQQLGYSSSSSSSSVNL 49 (98)
T ss_pred cccCHHHHHHHHHHhCCCCCCccceeEe
Confidence 4477777899999999964444444433
No 8
>PF14353 CpXC: CpXC protein
Probab=39.90 E-value=15 Score=27.69 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCcceeccceEeecCCCCcccchhhhhhhhh
Q 038078 50 WAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNLKKEYKGIF 93 (165)
Q Consensus 50 W~G~~~k~i~d~lG~~Vk~G~P~v~h~ka~n~~~dL~~E~~G~~ 93 (165)
-+|=+-...|.++|..+....|+++|...++.+.=+.-+.....
T Consensus 32 l~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~~~~i~~~P~~~~~~ 75 (128)
T PF14353_consen 32 LDGSLFSFTCPSCGHKFRLEYPLLYHDPEKKFMIYYFPDNQDEE 75 (128)
T ss_pred HcCCcCEEECCCCCCceecCCCEEEEcCCCCEEEEEcCCcchHH
Confidence 34445567899999999999999999999885554444433333
No 9
>PF11376 DUF3179: Protein of unknown function (DUF3179); InterPro: IPR021516 This family of proteins has no known function.
Probab=39.00 E-value=9.1 Score=33.34 Aligned_cols=27 Identities=44% Similarity=0.955 Sum_probs=22.4
Q ss_pred ceecccCcchhhhhhhhchhhhhcccC
Q 038078 12 TLFPMCGMNLAFDRHLIGPAMYFGLMG 38 (165)
Q Consensus 12 t~~Pv~s~NlAf~ReligPA~y~~~mg 38 (165)
||||+|+.-.+|+|.+-|=.+=|+..|
T Consensus 63 TyCplc~s~~~f~~~v~g~~l~fgvsG 89 (266)
T PF11376_consen 63 TYCPLCGSGMAFDRRVDGQVLTFGVSG 89 (266)
T ss_pred EECccCCCceEEecccCCCcceEEeec
Confidence 799999999999999988555565555
No 10
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=35.54 E-value=1.1e+02 Score=20.41 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHhhCcC
Q 038078 118 YIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPA 156 (165)
Q Consensus 118 y~ela~~vk~~l~~~~~~f~~~a~~M~~Wi~a~~~l~~~ 156 (165)
..+|.+.+++-....+ +..+.+.+..-.+.|+++|+.
T Consensus 36 K~~Li~~~~~l~~~~d--~~~~~~~~k~l~~~Wk~iG~v 72 (77)
T PF03993_consen 36 KEALIEEAEALAESED--WKEAAEEIKELQQEWKEIGPV 72 (77)
T ss_pred HHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHcCCC
Confidence 5667777755555445 788899999999999999974
No 11
>KOG2492 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=34.27 E-value=26 Score=33.40 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHhcCcceeccceEeecC--C-CCcccchhhhhhhhhhhhchHHHhh
Q 038078 57 VICDHLNLGVKTGLPYIFHSK--A-SNPFVNLKKEYKGIFWQEDIIPFFQ 103 (165)
Q Consensus 57 ~i~d~lG~~Vk~G~P~v~h~k--a-~n~~~dL~~E~~G~~l~e~i~~~~~ 103 (165)
-+.+..|+.|.++.+|..+.| + ||.++|-++|++--.+.| ++-||+
T Consensus 417 sLlrqVgYdv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl~~-Li~~Fr 465 (552)
T KOG2492|consen 417 SLLRQVGYDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRLFE-LITFFR 465 (552)
T ss_pred HHHHHhccCeeeeEEeeecccchhhhhhcccccHHHHHHHHHH-HHHHHH
Confidence 355778999999999999988 7 789999999999766653 333443
No 12
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=32.33 E-value=14 Score=25.00 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhcCccee
Q 038078 50 WAGWCTKVICDHLNLGVKT 68 (165)
Q Consensus 50 W~G~~~k~i~d~lG~~Vk~ 68 (165)
|.||-.+.||++||....|
T Consensus 11 ~~G~~~~eIA~~Lg~~~~T 29 (58)
T PF06056_consen 11 LQGWSIKEIAEELGVPRST 29 (58)
T ss_pred HcCCCHHHHHHHHCCChHH
Confidence 7899999999999987554
No 13
>KOG4153 consensus Fructose 1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=32.31 E-value=35 Score=30.89 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=34.1
Q ss_pred eeccceEeecCC--CC--cccchhhhhhhhhhhhchHHHhhhcCCCC
Q 038078 67 KTGLPYIFHSKA--SN--PFVNLKKEYKGIFWQEDIIPFFQAVTLPK 109 (165)
Q Consensus 67 k~G~P~v~h~ka--~n--~~~dL~~E~~G~~l~e~i~~~~~~~~l~~ 109 (165)
.+|.|.|.||.+ .+ +-.|.-.|..--++.|+.=|.|.++-|..
T Consensus 98 ~~gipvv~hSdhcakkllpw~dgm~eadeayfkehgEplfsShMlDl 144 (358)
T KOG4153|consen 98 AYGIPVVLHSDHCAKKLLPWFDGMLEADEAYFKEHGEPLFSSHMLDL 144 (358)
T ss_pred CCCccEEEechhhhhcCCccccccccccHHHHHHhcccchhhhcccc
Confidence 478999999975 33 66777888888889999999999974433
No 14
>PLN00211 predicted protein; Provisional
Probab=31.26 E-value=17 Score=25.34 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHH
Q 038078 48 DMWAGWCTKVIC 59 (165)
Q Consensus 48 DIW~G~~~k~i~ 59 (165)
=||.-+|.|-+|
T Consensus 5 viwtrfftkpvc 16 (61)
T PLN00211 5 VIWTRFFTKPVC 16 (61)
T ss_pred HHHHHHhccchh
Confidence 489989998333
No 15
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=31.07 E-value=1.1e+02 Score=27.09 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCcceeccceEeecCC--C--------------CcccchhhhhhhhhhhhchHHHhhhcCCCCCCC
Q 038078 49 MWAGWCTKVICDHLNLGVKTGLPYIFHSKA--S--------------NPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECT 112 (165)
Q Consensus 49 IW~G~~~k~i~d~lG~~Vk~G~P~v~h~ka--~--------------n~~~dL~~E~~G~~l~e~i~~~~~~~~l~~~a~ 112 (165)
+=||| +|-|=||+.-|=+.---++-=++. | .-+...|+|-....|+|-+..=|. .
T Consensus 46 vas~w-VknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~~q~~~k~~~wk~~qka~klle~aaekl~--------~ 116 (269)
T COG1093 46 VASGW-VKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTEHQRRKKIQEWKKEQKADKLLELAAEKLG--------K 116 (269)
T ss_pred HHHHH-HHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------C
Confidence 34455 466777776654443333322221 1 133445666666666665555444 3
Q ss_pred cHHHHHHHHHHHHHHHhccCchHHHHHHH---------HH-HHHHHHHHhhCcC
Q 038078 113 TVQECYIELSKQVKEKLSKVDPYFDKLAD---------AM-VTWIEAWDELNPA 156 (165)
Q Consensus 113 t~~~cy~ela~~vk~~l~~~~~~f~~~a~---------~M-~~Wi~a~~~l~~~ 156 (165)
+.++||.++...+-++.|+.=..|..++. .. .+|++.+.++-+.
T Consensus 117 ~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~e 170 (269)
T COG1093 117 DLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIARE 170 (269)
T ss_pred CHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHHh
Confidence 88999999999999999988666665543 22 5898888887653
No 16
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=30.28 E-value=46 Score=25.31 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=37.9
Q ss_pred CceecccCcchhhhhhhhchhh-hhcccCCCCccCccchhHHHHHHHHHHHHhcCcceeccceEeecCCCCcccch
Q 038078 11 GTLFPMCGMNLAFDRHLIGPAM-YFGLMGDGQPIGRYDDMWAGWCTKVICDHLNLGVKTGLPYIFHSKASNPFVNL 85 (165)
Q Consensus 11 gt~~Pv~s~NlAf~ReligPA~-y~~~mgdg~~~~R~dDIW~G~~~k~i~d~lG~~Vk~G~P~v~h~ka~n~~~dL 85 (165)
|...+++|.|..|+|+++ -.. ++. ++.-+ -+|+..++=+ ...|+.+.+-.=.+.|.+.+..+.++
T Consensus 67 ~~~~~~~G~~~~~r~~~l-~~vg~~~---~~~~~--~ED~~l~~~l----~~~G~~~~~~~~~~~~~~~p~t~~~~ 132 (193)
T PF13632_consen 67 GRPLFLSGSGMLFRREAL-REVGGFD---DPFSI--GEDMDLGFRL----RRAGYRIVYVPDAIVYTEAPPTFRAF 132 (193)
T ss_pred CCCccccCcceeeeHHHH-HHhCccc---ccccc--cchHHHHHHH----HHCCCEEEEecccceeeeCCCCHHHH
Confidence 455678899999999999 332 211 01111 1588776554 35677775554333455566655555
No 17
>PRK11621 twin-argninine leader-binding protein DmsD; Provisional
Probab=26.56 E-value=1.6e+02 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhC
Q 038078 133 DPYFDKLADAMVTWIEAWDELN 154 (165)
Q Consensus 133 ~~~f~~~a~~M~~Wi~a~~~l~ 154 (165)
.+|+.-+|...++++++|++--
T Consensus 172 ~~FY~~lA~L~~~~L~~~~~~~ 193 (204)
T PRK11621 172 HPFYQALAQLARLTLAQWQSQL 193 (204)
T ss_pred CchHHHHHHHHHHHHHHHHHHc
Confidence 5899999999999999988643
No 18
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=25.75 E-value=75 Score=24.53 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=30.8
Q ss_pred eecccCcchhhhhhhhchhhhhcccC-CCCccCccchhHHHHHHHHHHHHhcCcceec-cceEeecCCCCcccchh
Q 038078 13 LFPMCGMNLAFDRHLIGPAMYFGLMG-DGQPIGRYDDMWAGWCTKVICDHLNLGVKTG-LPYIFHSKASNPFVNLK 86 (165)
Q Consensus 13 ~~Pv~s~NlAf~ReligPA~y~~~mg-dg~~~~R~dDIW~G~~~k~i~d~lG~~Vk~G-~P~v~h~ka~n~~~dL~ 86 (165)
..+++|.|.+|+|+++ .-..| |. ...++|..-+.-++. .|+.+.+= .++|+|...+ .+.++.
T Consensus 156 ~~~~~G~~~~~rr~~~-----~~~g~fd~--~~~~eD~~l~~r~~~----~G~~~~~~~~~~v~~~~~~-~~~~~~ 219 (228)
T PF13641_consen 156 VAFLSGSGMLFRRSAL-----EEVGGFDP--FILGEDFDLCLRLRA----AGWRIVYAPDALVYHEEPS-SLKAFF 219 (228)
T ss_dssp -S-B--TEEEEEHHHH-----HHH-S--S--SSSSHHHHHHHHHHH----TT--EEEEEEEEEEE--SS-STHHHH
T ss_pred eeeccCcEEEEEHHHH-----HHhCCCCC--CCcccHHHHHHHHHH----CCCcEEEECCcEEEEeCCC-CHHHHH
Confidence 3567899999999998 22222 11 233478755443333 77777664 3678887543 334443
No 19
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=25.65 E-value=1.4e+02 Score=23.11 Aligned_cols=67 Identities=7% Similarity=0.086 Sum_probs=38.3
Q ss_pred ecccCcchhhhhhhhchhhhhccc----CCCCccCccchhHHHHHHHHHHHHhcCccee-ccceEeecCCCCcccch
Q 038078 14 FPMCGMNLAFDRHLIGPAMYFGLM----GDGQPIGRYDDMWAGWCTKVICDHLNLGVKT-GLPYIFHSKASNPFVNL 85 (165)
Q Consensus 14 ~Pv~s~NlAf~ReligPA~y~~~m----gdg~~~~R~dDIW~G~~~k~i~d~lG~~Vk~-G~P~v~h~ka~n~~~dL 85 (165)
.-++|.+.+|+|+++-...+...+ +.|.+...-+|.+-+.-+. ..|+.+.+ ..+.++|. .+..+.++
T Consensus 150 ~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~----~~g~~~~~~~~~~~~~~-~~~~~~~~ 221 (235)
T cd06434 150 PCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVL----SHGYKTVYQYTSEAYTE-TPENYKKF 221 (235)
T ss_pred EEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHH----HCCCeEEEecCCeEEEE-cchhHHHH
Confidence 346789999999999333222222 2233445557877654433 34776655 66777776 43343333
No 20
>PF15172 Prolactin_RP: Prolactin-releasing peptide
Probab=23.04 E-value=34 Score=22.92 Aligned_cols=17 Identities=53% Similarity=1.122 Sum_probs=12.6
Q ss_pred hchhhhhcccCCCC-ccCccc
Q 038078 28 IGPAMYFGLMGDGQ-PIGRYD 47 (165)
Q Consensus 28 igPA~y~~~mgdg~-~~~R~d 47 (165)
|-|+.|-+. |- |||||+
T Consensus 15 IdP~WY~gR---giRPvGRFG 32 (47)
T PF15172_consen 15 IDPAWYVGR---GIRPVGRFG 32 (47)
T ss_pred CCchheecc---ccccccccc
Confidence 348888655 55 899997
No 21
>PF15408 PH_7: Pleckstrin homology domain
Probab=23.04 E-value=63 Score=24.65 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 038078 135 YFDKLADAMVTWIEAWDE 152 (165)
Q Consensus 135 ~f~~~a~~M~~Wi~a~~~ 152 (165)
.|...+++|+.||+++++
T Consensus 78 ~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 78 CFASSKKVCQSWIQVMNS 95 (104)
T ss_pred hhhhHHHHHHHHHHHhcC
Confidence 577789999999987643
No 22
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=21.58 E-value=35 Score=24.96 Aligned_cols=23 Identities=30% Similarity=0.584 Sum_probs=20.7
Q ss_pred eecccCcchhhhhhhhchhhhhc
Q 038078 13 LFPMCGMNLAFDRHLIGPAMYFG 35 (165)
Q Consensus 13 ~~Pv~s~NlAf~ReligPA~y~~ 35 (165)
-||.||+...+.|.-=|||++.-
T Consensus 10 ~C~~CG~d~~~~~adDgPA~fvi 32 (86)
T PF06170_consen 10 RCPHCGLDYSHARADDGPAYFVI 32 (86)
T ss_pred cccccCCccccCCcCccchhHHH
Confidence 59999999999999999999843
No 23
>PF14409 Herpeto_peptide: Ribosomally synthesized peptide in Herpetosiphon
Probab=21.47 E-value=1.3e+02 Score=21.03 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHH-hhCc
Q 038078 134 PYFDKLADAMVTWIEAWD-ELNP 155 (165)
Q Consensus 134 ~~f~~~a~~M~~Wi~a~~-~l~~ 155 (165)
-||+..++-..+|+++|+ ..|+
T Consensus 20 ~~le~eaa~~~~~V~~~~~~~G~ 42 (58)
T PF14409_consen 20 TYLEEEAAEINDVVGCWKPRDGS 42 (58)
T ss_pred HHHHHHHHHHHHHHHhhhhccCC
Confidence 488888999999999999 5553
No 24
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.91 E-value=83 Score=22.25 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=24.6
Q ss_pred hhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHhccCchHHHHHHH
Q 038078 94 WQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLAD 141 (165)
Q Consensus 94 l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~l~~~~~~f~~~a~ 141 (165)
+++.|+|.++. |.+.++.+.+...-...||+..|.
T Consensus 26 it~~IlP~v~r-------------Y~~~s~~i~~~~~fwk~fFe~sAn 60 (66)
T PF08655_consen 26 ITDKILPAVER-------------YGESSEKIWDSAKFWKQFFEQSAN 60 (66)
T ss_pred HhcccchHHHH-------------HHHHHHHHHHHHhHHHHHHHhhhc
Confidence 45577777777 888888888877655566666553
Done!