Query 038078
Match_columns 165
No_of_seqs 85 out of 87
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:18:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lez_A Secreted effector prote 43.9 27 0.00092 27.2 4.3 35 94-131 17-51 (145)
2 3g2f_A Bone morphogenetic prot 38.1 51 0.0018 25.7 5.2 42 117-158 284-328 (336)
3 1s9u_A Putative component of a 23.9 1.3E+02 0.0044 23.1 5.2 22 133-154 175-196 (207)
4 3p0b_A TT1467 protein; glycosi 22.4 1.3E+02 0.0046 27.6 5.7 37 67-127 29-65 (540)
5 1bhu_A SMPI, metalloproteinase 18.3 31 0.0011 24.7 0.5 30 8-38 4-33 (102)
6 3j0f_E E1 envelope glycoprotei 15.1 41 0.0014 30.3 0.5 36 15-51 165-205 (439)
7 1i9w_A Fusion protein E1; enve 15.0 41 0.0014 29.8 0.5 33 15-51 165-205 (390)
8 3ung_C CMR2DHD; ferredoxin fol 14.8 3.6E+02 0.012 25.7 6.9 89 45-148 60-160 (693)
9 1i6z_A BAG-family molecular ch 14.6 2E+02 0.0067 22.0 4.2 53 98-157 78-130 (135)
10 2yin_A DOCK2, dedicator of cyt 14.5 3E+02 0.01 23.9 6.0 91 51-153 54-146 (436)
No 1
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=43.92 E-value=27 Score=27.22 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=27.7
Q ss_pred hhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHhcc
Q 038078 94 WQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEKLSK 131 (165)
Q Consensus 94 l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~l~~ 131 (165)
+.|+|+-||-= ..---+-++||.|+++++...|.+
T Consensus 17 i~E~IiNFFT~---ggvrr~n~~~y~e~~e~mt~aL~~ 51 (145)
T 2lez_A 17 ILEYIINFFTC---GGIRRRNETQYQELIETMAETLKS 51 (145)
T ss_dssp HHHHHHHHHHH---CCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcc---cchhhhhHHHHHHHHHHHHHHHHH
Confidence 57889999864 555567899999999999877653
No 2
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=38.07 E-value=51 Score=25.65 Aligned_cols=42 Identities=7% Similarity=0.174 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHHHHhhCcCcc
Q 038078 117 CYIELSKQVKEKLS---KVDPYFDKLADAMVTWIEAWDELNPAGA 158 (165)
Q Consensus 117 cy~ela~~vk~~l~---~~~~~f~~~a~~M~~Wi~a~~~l~~~~~ 158 (165)
|-.++.+.++.-|. .-+|-+.++.+.++..++.|++=+..++
T Consensus 284 ~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~~~~ 328 (336)
T 3g2f_A 284 AVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSVSP 328 (336)
T ss_dssp HHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC------
T ss_pred hHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcccCCC
Confidence 33445555544454 3378899999999999998888775443
No 3
>1s9u_A Putative component of anaerobic dehydrogenases; structural genomics, anaerobic dehydrogenases component, PSI structure initiative; 1.38A {Salmonella typhimurium} SCOP: a.184.1.1 PDB: 3efp_A 3cw0_A
Probab=23.88 E-value=1.3e+02 Score=23.13 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHhhC
Q 038078 133 DPYFDKLADAMVTWIEAWDELN 154 (165)
Q Consensus 133 ~~~f~~~a~~M~~Wi~a~~~l~ 154 (165)
.+|+..+|...+.|++.+++-=
T Consensus 175 ~~fY~~la~l~~~fl~~~~~~l 196 (207)
T 1s9u_A 175 HPFYQALGQLARLTLAQWQAQL 196 (207)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999887643
No 4
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=22.44 E-value=1.3e+02 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=22.1
Q ss_pred eeccceEeecCCCCcccchhhhhhhhhhhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHH
Q 038078 67 KTGLPYIFHSKASNPFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKE 127 (165)
Q Consensus 67 k~G~P~v~h~ka~n~~~dL~~E~~G~~l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~ 127 (165)
-.++|||.|.... +|.+|| ++|. ..+||+=|.+.+.+
T Consensus 29 HaHLPyvrh~~~~----~leE~W-----------l~ea---------i~etYlPLl~~~~~ 65 (540)
T 3p0b_A 29 HAHLPYVRAHGMW----PFGEET-----------LYEA---------MAETYLPLIRVLER 65 (540)
T ss_dssp EECCCCCTTSCSS----SSSHHH-----------HHHH---------HHHTHHHHHHHHHH
T ss_pred ecCCCcccCCCCC----CccHHH-----------HHHH---------HHHHHHHHHHHHHH
Confidence 4688999887531 143443 3444 35778777666644
No 5
>1bhu_A SMPI, metalloproteinase inhibitor; signal; NMR {Streptomyces nigrescens} SCOP: b.11.1.3
Probab=18.32 E-value=31 Score=24.73 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=24.6
Q ss_pred ccCCceecccCcchhhhhhhhchhhhhcccC
Q 038078 8 IPKGTLFPMCGMNLAFDRHLIGPAMYFGLMG 38 (165)
Q Consensus 8 ~p~gt~~Pv~s~NlAf~ReligPA~y~~~mg 38 (165)
-|.|++|+.+|..+.=-|.+| ||-=.-..|
T Consensus 4 cpagslctysgtglsgartvi-pasdmekag 33 (102)
T 1bhu_A 4 CPAGSLCTYSGTGLSGARTVI-PASDMEKAG 33 (102)
T ss_dssp SCSSSBCCBBSSSSCBSCCCB-SSSTHHHHS
T ss_pred CCCCcceeeccCCcccceeee-chhHhhhcc
Confidence 589999999999999999999 885443333
No 6
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=15.12 E-value=41 Score=30.25 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=25.8
Q ss_pred cccCcchhhhhhhh--chhhh---hcccCCCCccCccchhHH
Q 038078 15 PMCGMNLAFDRHLI--GPAMY---FGLMGDGQPIGRYDDMWA 51 (165)
Q Consensus 15 Pv~s~NlAf~Reli--gPA~y---~~~mgdg~~~~R~dDIW~ 51 (165)
|+++-=+-|||-++ +=-.| |++.|-|+ -|||+||=+
T Consensus 165 PiStawsPFD~KiVvyk~eVYNyDfP~YGag~-pG~FGDIQs 205 (439)
T 3j0f_E 165 PISASFTPFDHKVVIHRGLVYNYDFPEYGAMK-PGAFGDIQA 205 (439)
T ss_pred cccCCcCCCCceEEEecceeeccCCCcccCCC-Ccccccccc
Confidence 67777777888876 11112 78888888 699999965
No 7
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=15.02 E-value=41 Score=29.79 Aligned_cols=33 Identities=33% Similarity=0.730 Sum_probs=25.2
Q ss_pred cccCcchhhhhhhhchhhh--------hcccCCCCccCccchhHH
Q 038078 15 PMCGMNLAFDRHLIGPAMY--------FGLMGDGQPIGRYDDMWA 51 (165)
Q Consensus 15 Pv~s~NlAf~ReligPA~y--------~~~mgdg~~~~R~dDIW~ 51 (165)
|+++-=+-|||-++ .| |++.|.|+ -|||+||=+
T Consensus 165 PiStawsPFD~KiV---vyk~eVYNyDfP~YGag~-pG~FGDIQa 205 (390)
T 1i9w_A 165 PLSSAWTPFDNKIV---VYKDEVFNQDFPPYGSGQ-PGRFGDIQS 205 (390)
T ss_pred ccccccCCCCceeE---EEccceeccCCCcccCCC-Ccccccccc
Confidence 66776677888776 33 78888888 699999965
No 8
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR complex function; HET: ADP; 2.31A {Pyrococcus furiosus} PDB: 3ur3_C 4doz_A
Probab=14.77 E-value=3.6e+02 Score=25.66 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=46.9
Q ss_pred ccchhHHH-HHHHHHHHHhcCcc--eeccceEeecCC-CCcccc--hhhhhhhhhhhhchHHHhhhcCCCC------CCC
Q 038078 45 RYDDMWAG-WCTKVICDHLNLGV--KTGLPYIFHSKA-SNPFVN--LKKEYKGIFWQEDIIPFFQAVTLPK------ECT 112 (165)
Q Consensus 45 R~dDIW~G-~~~k~i~d~lG~~V--k~G~P~v~h~ka-~n~~~d--L~~E~~G~~l~e~i~~~~~~~~l~~------~a~ 112 (165)
+..|.|+| |.+-.+.+..-+-+ +.|.=.+.-... .|+|-+ |.+|..| +.+....+|. ...
T Consensus 60 k~~DlWagS~lls~l~w~~~~~~~~~~Gpd~il~P~lr~np~~~~~l~~~~~~--------~~~~~a~~PN~~~a~vp~~ 131 (693)
T 3ung_C 60 KQLDLWASSHLLSMLMYKALEVIVDKFGPEHVIYPSLRDQPFFLKFYLGENIG--------DEILVANLPNKALAIVSGK 131 (693)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGEEESCCTTCHHHHHHTTCCCCG--------GGGGSBCCCSEEEEEEETT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhCCCEEEccCcccCHHHHHHHHhccCC--------CchhhcCCCceEEEEcCHH
Confidence 35699987 44433333222222 344434444444 677766 3444444 4444444554 234
Q ss_pred cHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 038078 113 TVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIE 148 (165)
Q Consensus 113 t~~~cy~ela~~vk~~l~~~~~~f~~~a~~M~~Wi~ 148 (165)
..++|-.++=+.|++ ++.++++.|.+|+-
T Consensus 132 ~~~~~~e~i~~~i~~-------~~~~~~~~~~~~~l 160 (693)
T 3ung_C 132 EAEKIEEEIKKRIRD-------FLLQLYREAVDWAV 160 (693)
T ss_dssp THHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 666666655555665 55666777766654
No 9
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=14.60 E-value=2e+02 Score=21.99 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=35.5
Q ss_pred hHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHhhCcCc
Q 038078 98 IIPFFQAVTLPKECTTVQECYIELSKQVKEKLSKVDPYFDKLADAMVTWIEAWDELNPAG 157 (165)
Q Consensus 98 i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~l~~~~~~f~~~a~~M~~Wi~a~~~l~~~~ 157 (165)
++.-++++.+|.+.+....|=--+++.+++.|..-|....++ -+-+++|.|..
T Consensus 78 ~LE~LDs~~ip~~~~~~R~kRK~lV~~iQ~~L~~~D~l~~~~-------~~~~~~~q~~~ 130 (135)
T 1i6z_A 78 ILEEIDTMVLPEQFKDSRLKRKNLVKKVQVFLAECDTVEQYI-------CQETERLQSTN 130 (135)
T ss_dssp HHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHCCCC
T ss_pred HHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhh
Confidence 455567779999999888888889999888555444333333 33445666653
No 10
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=14.55 E-value=3e+02 Score=23.93 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCcceeccceEeecCC-CC-cccchhhhhhhhhhhhchHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH
Q 038078 51 AGWCTKVICDHLNLGVKTGLPYIFHSKA-SN-PFVNLKKEYKGIFWQEDIIPFFQAVTLPKECTTVQECYIELSKQVKEK 128 (165)
Q Consensus 51 ~G~~~k~i~d~lG~~Vk~G~P~v~h~ka-~n-~~~dL~~E~~G~~l~e~i~~~~~~~~l~~~a~t~~~cy~ela~~vk~~ 128 (165)
||+|+...|+.+.|.-..=.|-+-+... +. +-..+ +| .+.++++..|+. .+-=+..-+||.+|+.+....
T Consensus 54 Aa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~-ke----~L~~~~i~~f~k---g~~~E~ai~l~k~L~~~yE~~ 125 (436)
T 2yin_A 54 AAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQL-KE----TLYETIIGYFDK---GKMWEEAISLCKELAEQYEME 125 (436)
T ss_dssp HHHHHHHHHTTCCSSCCC--------------CHHHH-HH----HHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccccCcccccCCCCccccHHHH-HH----HHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999988864321121111100 00 10111 22 356778888876 444455566777777766553
Q ss_pred hccCchHHHHHHHHHHHHHHHHHhh
Q 038078 129 LSKVDPYFDKLADAMVTWIEAWDEL 153 (165)
Q Consensus 129 l~~~~~~f~~~a~~M~~Wi~a~~~l 153 (165)
.- =|.++++....=.+..+++
T Consensus 126 ~~----Dy~~Ls~~~~~~a~~y~~I 146 (436)
T 2yin_A 126 IF----DYELLSQNLIQQAKFYESI 146 (436)
T ss_dssp SC----CHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHH
Confidence 22 1445555444333444433
Done!