BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038079
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 62/107 (57%)
Query: 38 DEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN 97
+ +P+FV + ++F++S+ +L + L + ++ +++ +H+ KGS +S+GA +VKN
Sbjct: 41 ESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKN 100
Query: 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144
V + C ++E +QVK E +K +L++ F+L +Q A
Sbjct: 101 ACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVA 147
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDE--DPNFVEVTINVYFEESNELLPMIE 63
L Q+ ++ + + ++DEQF +L+ L DE P FV + ++ ++++ ++ I
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQML---QDEGGTPGFVSEVVTLFCDDADRIINEIA 62
Query: 64 DLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKT 123
LL + + +++ +H+ KGS ASVGA KVK C++ +G A V+
Sbjct: 63 TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 122
Query: 124 EQGNLKAKLDSYFELVKQAKA 144
+ +L+ K + +L +Q +A
Sbjct: 123 DFYDLRNKFQTMLQLEQQIQA 143
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 58/105 (55%)
Query: 40 DPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEV 99
+P FV ++++F++S +L + + + I+ +++ +H+FKGS AS+GA +VKN
Sbjct: 38 NPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSC 97
Query: 100 NVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144
C +I+ + +QVK E +K KL++ L +Q A
Sbjct: 98 VAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVA 142
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 1 MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDED---PNFVEVTINVYFEESNE 57
M + L +Q+ ++ + ++DEQF +L+ L ED P FV + ++ ++++
Sbjct: 1 MAAAALREQLNALLSSMFASGLVDEQFQQLQML----QEDGGTPGFVAEVVTLFCDDADR 56
Query: 58 LLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAA 117
++ + LL + ++ +++ +H+ KGS ASVGA KVK C++ + +G A
Sbjct: 57 IISELAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMA 116
Query: 118 FEQVKTEQGNLKAKLDS 134
V+ E +L+ K +
Sbjct: 117 LAVVRNEFYDLRNKFQT 133
>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
Length = 274
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ + VYF+E++ P
Sbjct: 38 PSPQHILGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKETHPKFP 95
>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
pdb|1QX4|B Chain B, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
Length = 274
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ + VYF+E++ P
Sbjct: 38 PSPQHILGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKETHPKFP 95
>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5
Reductase
Length = 275
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 39 PSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFP 96
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From
Pig Liver At 2.4 Angstroms Resolution
Length = 272
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 36 PSPEHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFP 93
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 59 LPMIEDLLGKNPIEGSEMERILHRFKGSCASVG 91
+P+ ++L ++ ++GS+ + L F G+C+ G
Sbjct: 783 IPVKSEVLPRDSLKGSQFQEPLMEFSGACSGCG 815
>pdb|3IQT|A Chain A, Structure Of The Hpt Domain Of Sensor Protein Bara From
Escherichia Coli Cft073
Length = 123
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 63 EDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNG 109
E L+G+NP EG + ++H+ GSC G + KN ++ R+G
Sbjct: 51 EQLVGENP-EG--LVDLIHKLHGSCGYSGVPRXKNLCQLIEQQLRSG 94
>pdb|1A3H|A Chain A, Endoglucanase Cel5a From Bacillus Agaradherans At 1.6a
Resolution
pdb|2A3H|A Chain A, Cellobiose Complex Of The Endoglucanase Cel5a From
Bacillus Agaradherans At 2.0 A Resolution
pdb|3A3H|A Chain A, Cellotriose Complex Of The Endoglucanase Cel5a From
Bacillus Agaradherans At 1.6 A Resolution
Length = 300
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK 94
+ SD DP N+Y EE+ + + +L G P + + I + GS + G N+
Sbjct: 99 ILSDNDP-------NIYKEEAKDFFDEMSELYGDYP---NVIYEIANEPNGSDVTWG-NQ 147
Query: 95 VKNEVNVVIACCRNGD 110
+K VI RN D
Sbjct: 148 IKPYAEEVIPIIRNND 163
>pdb|1H5V|A Chain A, Thiopentasaccharide Complex Of The Endoglucanase Cel5a
From Bacillus Agaradharens At 1.1 A Resolution In The
Tetragonal Crystal Form
Length = 304
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK 94
+ SD DP N+Y EE+ + + +L G P + + I + GS + G N+
Sbjct: 102 ILSDNDP-------NIYKEEAKDFFDEMSELYGDYP---NVIYEIANEPNGSDVTWG-NQ 150
Query: 95 VKNEVNVVIACCRNGD 110
+K VI RN D
Sbjct: 151 IKPYAEEVIPIIRNND 166
>pdb|3OTR|A Chain A, 2.75 Angstrom Crystal Structure Of Enolase 1 From
Toxoplasma Gondii
pdb|3OTR|B Chain B, 2.75 Angstrom Crystal Structure Of Enolase 1 From
Toxoplasma Gondii
pdb|3OTR|C Chain C, 2.75 Angstrom Crystal Structure Of Enolase 1 From
Toxoplasma Gondii
pdb|3OTR|D Chain D, 2.75 Angstrom Crystal Structure Of Enolase 1 From
Toxoplasma Gondii
pdb|3OTR|E Chain E, 2.75 Angstrom Crystal Structure Of Enolase 1 From
Toxoplasma Gondii
pdb|3OTR|F Chain F, 2.75 Angstrom Crystal Structure Of Enolase 1 From
Toxoplasma Gondii
Length = 452
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 65 LLGKNPIEGSEMERIL--------HRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKA 116
LLGK+P + ++ ++ + + S + +GAN + + V IACCR G
Sbjct: 78 LLGKDPCDQKGIDMLMVEQLDGTKNEWGYSKSKLGANAI---LGVSIACCRAGAASKGLP 134
Query: 117 AFEQVKTEQGNLKAKL 132
++ + T G K+
Sbjct: 135 LYKYIATLAGKTIDKM 150
>pdb|1QHZ|A Chain A, Native Tetragonal Structure Of The Endoglucanase Cel5a
From Bacillus Agaradhaerens
pdb|1QI0|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With Cellobiose
pdb|1QI2|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
2',4'-Dinitrophenyl 2-Deoxy-2-Fluoro-B- D-Cellotrioside
pdb|1E5J|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Tetragonal Crystal Form In Complex With
Methyl-4ii-S-Alpha-Cellobiosyl-4ii-Thio
Beta-Cellobioside
pdb|2V38|A Chain A, Family 5 Endoglucanase Cel5a From Bacillus Agaradhaerens
In Complex With Cellobio-Derived Noeuromycin
Length = 305
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK 94
+ SD DP N+Y EE+ + + +L G P + + I + GS + G N+
Sbjct: 102 ILSDNDP-------NIYKEEAKDFFDEMSELYGDYP---NVIYEIANEPNGSDVTWG-NQ 150
Query: 95 VKNEVNVVIACCRNGD 110
+K VI RN D
Sbjct: 151 IKPYAEEVIPIIRNND 166
>pdb|4A3H|A Chain A, 2',4' Dinitrophenyl-2-Deoxy-2-Fluro-B-D-Cellobioside
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhaerens At 1.6 A Resolution
pdb|5A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellobiosylENZYME INTERMEDIATE COMPLEX
Of The Endoglucanase Cel5a From Bacillus Agaradhearans
At 1.8 Angstroms Resolution
pdb|6A3H|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
COMPLEX OF THE Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.6 Angstrom Resolution
pdb|7A3H|A Chain A, Native Endoglucanase Cel5a Catalytic Core Domain At 0.95
Angstroms Resolution
pdb|8A3H|A Chain A, Cellobiose-derived Imidazole Complex Of The Endoglucanase
Cel5a From Bacillus Agaradhaerens At 0.97 A Resolution
pdb|1HF6|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In The
Orthorhombic Crystal Form In Complex With Cellotriose
pdb|1H11|A Chain A, 2-Deoxy-2-Fluro-B-D-CellotriosylENZYME INTERMEDIATE
Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution
pdb|1H2J|A Chain A, Endoglucanase Cel5a In Complex With Unhydrolysed And
Covalently Linked 2,4-Dinitrophenyl-2-Deoxy-2-
Fluoro-Cellobioside At 1.15 A Resolution
pdb|1OCQ|A Chain A, Complex Of The Endoglucanase Cel5a From Bacillus
Agaradhearans At 1.08 Angstrom Resolution With
Cellobio-Derived Isofagomine
pdb|1W3K|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In Complex
With Cellobio Derived-tetrahydrooxazine
pdb|1W3L|A Chain A, Endoglucanase Cel5a From Bacillus Agaradhaerens In Complex
With Cellotri Derived-Tetrahydrooxazine
Length = 303
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK 94
+ SD DP N+Y EE+ + + +L G P + + I + GS + G N+
Sbjct: 102 ILSDNDP-------NIYKEEAKDFFDEMSELYGDYP---NVIYEIANEPNGSDVTWG-NQ 150
Query: 95 VKNEVNVVIACCRNGD 110
+K VI RN D
Sbjct: 151 IKPYAEEVIPIIRNND 166
>pdb|3EC6|A Chain A, Crystal Structure Of The General Stress Protein 26 From
Bacillus Anthracis Str. Sterne
Length = 139
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 23/53 (43%)
Query: 23 LDEQFVELEGLA--------------------LASDEDPNFVEVTIN---VYF 52
LDE ++E+EGLA L EDPN+V + IN +Y+
Sbjct: 73 LDEDYIEVEGLASIEEDSTLKNKFWNNSLKRWLLRPEDPNYVLIKINPDTIYY 125
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex
With Alpha,Beta-Methylene-Atp In Presence Of Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From The
Crystal Structure Of Its Complex With Catechol Estrogen
Length = 219
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 11 ASMRQHLLDEEILDEQFVELEGL 33
A + Q++ DEEI+ +F+EL+G+
Sbjct: 181 AMVAQYVPDEEIIKREFLELKGI 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,038,367
Number of Sequences: 62578
Number of extensions: 160344
Number of successful extensions: 387
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 30
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)