BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038079
(144 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis
thaliana GN=AHP4 PE=1 SV=2
Length = 127
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 22 ILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILH 81
LDEQF+ELE L D +PNFVE +YF++S L+ I+ L + + + ++ +H
Sbjct: 11 YLDEQFMELE--ELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 68
Query: 82 RFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFE 137
+FKGS S+GA+KVK E CR G+ EG F+Q+K E L+ KL+ YF+
Sbjct: 69 QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQ 124
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis
thaliana GN=AHP2 PE=1 SV=1
Length = 156
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP-MIED 64
L +Q L + LD+QF EL+ L D P+FV ++++FE+ +L+ M
Sbjct: 8 LQRQFRDYTISLYQQGFLDDQFTELK--KLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65
Query: 65 LLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
L ++ S++ +H+ KGS +SVGA +VK CC + EG +QV E
Sbjct: 66 LDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIE 125
Query: 125 QGNLKAKLDSYFELVKQ 141
LK KL F L KQ
Sbjct: 126 YKALKTKLQDMFNLEKQ 142
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis
thaliana GN=AHP3 PE=1 SV=2
Length = 155
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDE-DPNFVEVTINVYFEESNELLP-MIE 63
L ++ L + LD+QF EL+ L DE P+FV + ++FE+ +L+ M
Sbjct: 8 LQRRFCDFTISLYHQGFLDDQFTELKKL---QDECSPDFVAEVVTLFFEDCEKLISNMAR 64
Query: 64 DLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKT 123
L ++ + +H+ KGS +SVGA +VK + CC + + EG +QV
Sbjct: 65 ALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124
Query: 124 EQGNLKAKLDSYFELVKQ 141
E LKAKL F L +Q
Sbjct: 125 EYKTLKAKLQDLFNLEQQ 142
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis
thaliana GN=AHP5 PE=1 SV=2
Length = 157
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDL 65
L +Q L + LD QF EL L + P+FV ++++F++ ++L+ +
Sbjct: 9 LQRQFQDYIVSLYQQGFLDNQFSELR--KLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66
Query: 66 LGK-NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
L + + ++ +++ +H+ KGS +SVGA +VKN CC + EG +QV E
Sbjct: 67 LERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYE 126
Query: 125 QGNLKAKLDSYFELVKQ 141
LK KL F L KQ
Sbjct: 127 YKMLKTKLQDLFNLEKQ 143
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis
thaliana GN=AHP1 PE=1 SV=1
Length = 154
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 62/107 (57%)
Query: 38 DEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN 97
+ +P+FV + ++F++S+ +L + L + ++ +++ +H+ KGS +S+GA +VKN
Sbjct: 36 ESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKN 95
Query: 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144
V + C ++E +QVK E +K +L++ F+L +Q A
Sbjct: 96 ACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVA 142
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa
subsp. japonica GN=HP1 PE=1 SV=1
Length = 149
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 1 MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDE--DPNFVEVTINVYFEESNEL 58
M + L Q+ ++ + + ++DEQF +L+ L DE P FV + ++ ++++ +
Sbjct: 1 MAAAALRDQLTALLSSMFSQGLVDEQFQQLQML---QDEGGTPGFVSEVVTLFCDDADRI 57
Query: 59 LPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF 118
+ I LL + + +++ +H+ KGS ASVGA KVK C++ +G A
Sbjct: 58 INEIATLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMAL 117
Query: 119 EQVKTEQGNLKAKLDSYFELVKQAKA 144
V+ + +L+ K + +L +Q +A
Sbjct: 118 AVVRNDFYDLRNKFQTMLQLEQQIQA 143
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis
thaliana GN=AHP6 PE=2 SV=2
Length = 154
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 41 PNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI---LHRFKGSCASVGANKVKN 97
PNFV IN+YF+ES +LL + LL E S+ ++I L++ GS +S+GA +V+N
Sbjct: 42 PNFVYDVINIYFDESEKLLRNLRLLLMDR--EFSDYKKIGLHLNQLVGSSSSIGARRVRN 99
Query: 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141
+ + G E V+ E LK + F+L +Q
Sbjct: 100 VCVAFRSASELSNRPGCLRGLEVVEHEYHYLKNMMHELFQLEQQ 143
>sp|Q9Z7P2|SYD_CHLPN Aspartate--tRNA ligase OS=Chlamydia pneumoniae GN=aspS PE=3 SV=1
Length = 584
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGK-NPIEGSEMERILHR--FKGSCASVG 91
L +D P F ++ I + F ++ +LLP+IE L+ +G E+ L + ++ + S G
Sbjct: 227 LRADRQPEFAQIDIEMSFGDTQDLLPIIEQLVATLFATQGIEIPLPLAKMTYQEAKDSYG 286
Query: 92 ANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKA------------KLDSYFELV 139
+K ++ + CR+ + + F G +K +LD Y E V
Sbjct: 287 TDKPDLRFDLKLKDCRDYAKRSSFSIFLDQLAHGGTIKGFCVPGGATMSRKQLDGYTEFV 346
Query: 140 KQAKA 144
K+ A
Sbjct: 347 KRYGA 351
>sp|Q5L734|SYD_CHLAB Aspartate--tRNA ligase OS=Chlamydophila abortus (strain S26/3)
GN=aspS PE=3 SV=1
Length = 584
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGKN-PIEGSEMERILHRFKGSCAS--VG 91
L +D P F ++ I + F N+L P+IE L+ + ++G +++ L R A G
Sbjct: 227 LRADRQPEFAQIDIEMSFGTPNDLFPIIEQLVVEMFAVQGIKIDLPLPRMTYQEAKDLYG 286
Query: 92 ANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKA------------KLDSYFELV 139
+K + + CR E + + F + G +K +LD Y E V
Sbjct: 287 TDKPDLRFGLQLHDCREHAKEFSFSIFLDQLAQGGTIKGFCVPGGADMSRKQLDVYTEFV 346
Query: 140 KQAKA 144
K+ A
Sbjct: 347 KRYGA 351
>sp|P00387|NB5R3_HUMAN NADH-cytochrome b5 reductase 3 OS=Homo sapiens GN=CYB5R3 PE=1 SV=3
Length = 301
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 65 PSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFP 122
>sp|Q0X0E5|NB5R3_CANFA NADH-cytochrome b5 reductase 3 OS=Canis familiaris GN=CYB5R3 PE=1
SV=1
Length = 301
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 65 PSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFP 122
>sp|Q60HG4|NB5R3_MACFA NADH-cytochrome b5 reductase 3 OS=Macaca fascicularis GN=CYB5R3
PE=2 SV=3
Length = 301
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 65 PSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFP 122
>sp|P20070|NB5R3_RAT NADH-cytochrome b5 reductase 3 OS=Rattus norvegicus GN=Cyb5r3 PE=1
SV=2
Length = 301
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ + VYF++++ P
Sbjct: 65 PSPQHILGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFP 122
>sp|Q9DCN2|NB5R3_MOUSE NADH-cytochrome b5 reductase 3 OS=Mus musculus GN=Cyb5r3 PE=1 SV=3
Length = 301
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ + VYF++++ P
Sbjct: 65 PSPQHILGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPKFP 122
>sp|P83686|NB5R3_PIG NADH-cytochrome b5 reductase 3 (Fragment) OS=Sus scrofa GN=CYB5R3
PE=1 SV=1
Length = 272
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 36 PSPEHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFP 93
>sp|P07514|NB5R3_BOVIN NADH-cytochrome b5 reductase 3 OS=Bos taurus GN=CYB5R3 PE=1 SV=3
Length = 301
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP 60
+P H + QH+ +D V ++SD+D FV++ I VYF++++ P
Sbjct: 65 PSPEHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFP 122
>sp|Q67LP0|SYD_SYMTH Aspartate--tRNA ligase OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=aspS PE=3 SV=1
Length = 593
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGK--NPIEGSEMERILHR--FKGSCASV 90
L +D P F ++ + + F E +++L M+E ++ + G E+ R + + A
Sbjct: 226 LRADRQPEFTQIDVEMSFVERDDVLSMMEQMVARVFRDALGVEVPTPFKRLTYAEAMARY 285
Query: 91 GANKVK-------NEVNVVIACCRNGDIEGAKAAFEQVKTEQ-----GNLKAKLDSYFEL 138
G++K +V+ V A C G +GA A QVK G + ++D E
Sbjct: 286 GSDKPDLRFGMELVDVSDVAAGCGFGVFKGAVEAGGQVKGINAKGCGGYSRKQIDELTEF 345
Query: 139 VKQAKA 144
VK KA
Sbjct: 346 VKTYKA 351
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 80 LHRFKGSCASVGANKVKNEVNVVIAC-CRNGDIEGAKAAFEQVK 122
+ RF GA N++I C C+ GD+E A+ FE++K
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 289
>sp|P71198|TRAM5_ECOLX Protein TraM OS=Escherichia coli GN=traM PE=4 SV=1
Length = 146
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 32 GLALASDEDPNFVEVTINV-YFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASV 90
G+A+ D DP + TIN+ ++S I D SE+E I HR+ G A
Sbjct: 19 GIAVGRD-DPILILQTINMKLMQDSASAQQEILDAFK------SELESIAHRW-GDDAK- 69
Query: 91 GANKVKNEVNVVIACCRN----GDIEGAKAAFEQVKTEQGNLKAKL 132
K + +N +A ++ G EGAKAA E V+ E + A+L
Sbjct: 70 --GKAERTLNAALAASKDAMTRGMQEGAKAAAEAVRREVEAVTAQL 113
>sp|Q46175|SYD_CHLCV Aspartate--tRNA ligase OS=Chlamydophila caviae (strain GPIC)
GN=aspS PE=3 SV=2
Length = 584
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLLGKN-PIEGSEMERILHRFKGSCAS--VG 91
L +D P F ++ I + F ++L P+IE L+ + ++G +++ L R A G
Sbjct: 227 LRADRQPEFAQIDIEMSFATPDDLFPIIEQLVVEMFSVQGIKIDLPLPRMTYQEAKDLYG 286
Query: 92 ANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKA------------KLDSYFELV 139
+K + + CR + + + F + G +K +LD Y E V
Sbjct: 287 TDKPDLRFGLQLRDCREHAKQFSFSIFLDQLAQGGTIKGFCVPGGADMSRKQLDVYTEFV 346
Query: 140 KQAKA 144
K+ A
Sbjct: 347 KRYGA 351
>sp|P12659|HCYA_ENTDO Hemocyanin A-type, units Ode to Odg (Fragment) OS=Enteroctopus
dofleini PE=2 SV=2
Length = 1233
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 2 ESNP-LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTIN 49
ESNP LH + AS QHL D L ++ +LE + D+ N + T N
Sbjct: 671 ESNPNLHTRAASTPQHLFDYNKLGYKYDDLEFHGMNIDQLENAIHKTQN 719
>sp|B0BB18|SYM_CHLTB Methionine--tRNA ligase OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=metG PE=3 SV=1
Length = 550
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI 79
+ ++ +F+ LEG S D NF++ ++ + E + L + +L E S+ E
Sbjct: 317 DALVTSEFLLLEGFQF-SKSDGNFID--MDAFLETYS--LDKLRYVLAAIAPETSDSEFS 371
Query: 80 LHRFKGSCASVGANKVKNEVNVVIA-CCRNGDIEGAKAAFEQ 120
FK C S K N VN V+A +NG E + EQ
Sbjct: 372 FQEFKTRCNSELVGKYGNFVNRVLAFAVKNGCTELSSPQLEQ 413
>sp|B0B9D9|SYM_CHLT2 Methionine--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=metG PE=3 SV=1
Length = 550
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI 79
+ ++ +F+ LEG S D NF++ ++ + E + L + +L E S+ E
Sbjct: 317 DALVTSEFLLLEGFQF-SKSDGNFID--MDAFLETYS--LDKLRYVLAAIAPETSDSEFS 371
Query: 80 LHRFKGSCASVGANKVKNEVNVVIA-CCRNGDIEGAKAAFEQ 120
FK C S K N VN V+A +NG E + EQ
Sbjct: 372 FQEFKTRCNSELVGKYGNFVNRVLAFAVKNGCTELSSPQLEQ 413
>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3
Length = 3503
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 17 LLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLP-MIEDLLGKNPIEGSE 75
LLD E+ E +E+ L + +P +T+ + + N+ P +D + E +
Sbjct: 1387 LLDREVQSEFRLEIRALDTTASNNPQSSAITVKIEVADVNDNAPEWPQDPIDLQVSEATP 1446
Query: 76 MERILHRFKGSCASVGAN 93
+ I+H F + A G N
Sbjct: 1447 VGTIIHNFTATDADTGTN 1464
>sp|O84035|SYM_CHLTR Methionine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=metG PE=3 SV=1
Length = 550
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI 79
+ ++ +F+ LEG S D NF++ ++ + E + L + +L E S+ E
Sbjct: 317 DALVTSEFLLLEGFQF-SKSDGNFID--MDAFLETYS--LDKLRYVLAAIAPETSDSEFS 371
Query: 80 LHRFKGSCASVGANKVKNEVNVVIA-CCRNGDIEGAKAAFEQ 120
FK C S K N VN V+A +NG E + EQ
Sbjct: 372 FQEFKTRCNSELVGKYGNFVNRVLAFAVKNGCTELSSPQLEQ 413
>sp|Q3KMZ0|SYM_CHLTA Methionine--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=metG PE=3 SV=1
Length = 550
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI 79
+ ++ +F+ LEG S D NF++ ++ + E + L + +L E S+ E
Sbjct: 317 DALVTSEFLLLEGFQF-SKSDGNFID--MDAFLETYS--LDKLRYVLAAIAPETSDSEFS 371
Query: 80 LHRFKGSCASVGANKVKNEVNVVIA-CCRNGDIEGAKAAFEQ 120
FK C S K N VN V+A +NG E + EQ
Sbjct: 372 FQEFKTRCNSELVGKYGNFVNRVLAFAVKNGCTELSSPQLEQ 413
>sp|Q82SQ5|SYD_NITEU Aspartate--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=aspS PE=3 SV=1
Length = 593
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 35 LASDEDPNFVEVTINVYFEESNELLPMIEDLL 66
L +D P F ++ I F NE++ M+ED++
Sbjct: 222 LRADRQPEFTQIDIETSFLPENEIMGMMEDMI 253
>sp|P0AEC5|BARA_ECOLI Signal transduction histidine-protein kinase BarA OS=Escherichia
coli (strain K12) GN=barA PE=1 SV=1
Length = 918
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 63 EDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNG 109
E L+G+NP EG + ++H+ GSC G ++KN ++ R+G
Sbjct: 846 EQLVGENP-EG--LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSG 889
>sp|P0AEC6|BARA_ECOL6 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=barA
PE=1 SV=1
Length = 918
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 63 EDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNG 109
E L+G+NP EG + ++H+ GSC G ++KN ++ R+G
Sbjct: 846 EQLVGENP-EG--LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSG 889
>sp|P0AEC7|BARA_ECO57 Signal transduction histidine-protein kinase BarA OS=Escherichia
coli O157:H7 GN=barA PE=3 SV=1
Length = 918
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 63 EDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNG 109
E L+G+NP EG + ++H+ GSC G ++KN ++ R+G
Sbjct: 846 EQLVGENP-EG--LVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSG 889
>sp|P54428|YRKA_BACSU UPF0053 protein YrkA OS=Bacillus subtilis (strain 168) GN=yrkA PE=3
SV=2
Length = 434
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 1 MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASD----------------EDPNFV 44
+ES P+H + M++ IL +++ GL A D E PN
Sbjct: 297 IESVPIHDVLVKMQKERTHIAILVDEYGGTSGLVTAEDILEEIVGEIRDEFDKDEVPNIR 356
Query: 45 EVTINVYFEESNELLPMIEDLLG 67
+V N Y +S L+ + DLLG
Sbjct: 357 KVNDNHYILDSKVLIEDVNDLLG 379
>sp|B4UIE3|SYD_ANASK Aspartate--tRNA ligase OS=Anaeromyxobacter sp. (strain K) GN=aspS
PE=3 SV=1
Length = 603
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 38 DEDPNFVEVTINVYFEESNELLPMIEDLLGK--NPIEGSEMERILHR--FKGSCASVGAN 93
D P F ++ + + F E N++ ++E L+ K + G E+ R R F+ S A G +
Sbjct: 234 DRQPEFTQIDVEMSFVEQNDVFDVMEGLVVKLWKEVLGIEIPRPFQRMPFEESMAKYGND 293
Query: 94 K 94
K
Sbjct: 294 K 294
>sp|Q54RR8|RDEA_DICDI Phosphorelay intermediate protein rdeA OS=Dictyostelium discoideum
GN=rdeA PE=1 SV=1
Length = 254
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 81 HRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTE 124
H KGS + +G V+ + A C+N ++E A++ + ++K E
Sbjct: 65 HDIKGSSSYIGCEAVRYVSGKIEAYCKNDELEKAESFYPELKKE 108
>sp|Q2IKX7|SYD_ANADE Aspartate--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=aspS PE=3 SV=1
Length = 603
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 38 DEDPNFVEVTINVYFEESNELLPMIEDLLGK--NPIEGSEMERILHR--FKGSCASVGAN 93
D P F ++ + + F E N++ ++E L+ K + G E+ R R F+ S A G +
Sbjct: 234 DRQPEFTQIDVEMSFVEQNDVFDVMEGLVVKLWKEVLGIEIPRPFQRMPFEESMAKYGND 293
Query: 94 K 94
K
Sbjct: 294 K 294
>sp|B8JH60|SYD_ANAD2 Aspartate--tRNA ligase OS=Anaeromyxobacter dehalogenans (strain
2CP-1 / ATCC BAA-258) GN=aspS PE=3 SV=1
Length = 603
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 38 DEDPNFVEVTINVYFEESNELLPMIEDLLGK--NPIEGSEMERILHR--FKGSCASVGAN 93
D P F ++ + + F E N++ ++E L+ K + G E+ R R F+ S A G +
Sbjct: 234 DRQPEFTQIDVEMSFVEQNDVFDVMEGLVVKLWKEVLGIEIPRPFQRMPFEESMAKYGND 293
Query: 94 K 94
K
Sbjct: 294 K 294
>sp|Q2PIT3|LAP1_ASPOR Leucine aminopeptidase 1 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=lap1 PE=3 SV=1
Length = 387
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 46 VTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCAS--VGANKVKNEVNVVI 103
V + + + N LP I G + +GS IL +G S V K N +
Sbjct: 182 VVLGAHQDSINLFLPSILAAPGADD-DGSGTVTILEALRGLLQSDTVAQGKAPNTIEFHW 240
Query: 104 ACCRNGDIEGAKAAFEQVKTEQGNLKAKL 132
G + G++A F Q K E+ ++KA L
Sbjct: 241 YSAEEGGMLGSQAIFSQYKQERRDIKAML 269
>sp|B8NYX1|LAP1_ASPFN Leucine aminopeptidase 1 OS=Aspergillus flavus (strain ATCC 200026
/ FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=lap1
PE=3 SV=1
Length = 387
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 46 VTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCAS--VGANKVKNEVNVVI 103
V + + + N LP I G + +GS IL +G S V K N +
Sbjct: 182 VVLGAHQDSINLFLPSILAAPGADD-DGSGTVTILEALRGLLQSDTVAQGKAPNTIEFHW 240
Query: 104 ACCRNGDIEGAKAAFEQVKTEQGNLKAKL 132
G + G++A F Q K E+ ++KA L
Sbjct: 241 YSAEEGGMLGSQAIFSQYKQERRDIKAML 269
>sp|A6KY05|G1092_BACV8 Glycosyl hydrolase family 109 protein 2 OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=BVU_0611
PE=3 SV=1
Length = 413
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 61 MIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVK-----NEVNVV-----IACCRNG 109
++ D GK P+ G + ER++ ++K +V + + NE+N + I C RNG
Sbjct: 311 LLLDEYGKEPLSGEQFERMMEQYKHPFTAVIGEEARRKNMPNEMNYIMDYRLIHCLRNG 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,713,963
Number of Sequences: 539616
Number of extensions: 2113134
Number of successful extensions: 5468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 5436
Number of HSP's gapped (non-prelim): 54
length of query: 144
length of database: 191,569,459
effective HSP length: 106
effective length of query: 38
effective length of database: 134,370,163
effective search space: 5106066194
effective search space used: 5106066194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)