Query 038079
Match_columns 144
No_of_seqs 102 out of 362
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us6_A Histidine-containing ph 100.0 9.5E-39 3.3E-43 238.6 14.2 141 1-143 1-141 (153)
2 1yvi_A Histidine-containing ph 100.0 6.7E-37 2.3E-41 227.0 13.9 140 3-144 3-143 (149)
3 2r25_A Phosphorelay intermedia 100.0 4.9E-30 1.7E-34 193.8 11.1 118 16-137 2-164 (167)
4 2a0b_A HPT domain; sensory tra 99.9 3.2E-23 1.1E-27 148.4 9.9 116 17-139 6-122 (125)
5 3myf_A Sensor protein; HPT, hi 99.8 3.2E-19 1.1E-23 127.6 12.2 114 18-138 1-115 (119)
6 1y6d_A Phosphorelay protein LU 99.8 2.8E-21 9.5E-26 138.5 -3.4 109 21-135 10-118 (120)
7 3iqt_A Signal transduction his 99.8 3.2E-18 1.1E-22 123.2 10.5 110 20-136 12-122 (123)
8 2ooc_A Histidine phosphotransf 99.7 2.2E-18 7.6E-23 122.2 6.7 102 20-138 8-109 (113)
9 1sr2_A Putative sensor-like hi 99.6 3E-16 1E-20 111.9 6.7 88 39-128 28-115 (116)
10 1tqg_A Chemotaxis protein CHEA 99.6 7.4E-15 2.5E-19 101.8 7.0 91 44-134 3-102 (105)
11 2ld6_A Chemotaxis protein CHEA 99.4 5.2E-13 1.8E-17 97.3 6.7 91 45-135 3-102 (139)
12 1i5n_A Chemotaxis protein CHEA 99.4 7.7E-13 2.6E-17 97.2 6.2 89 45-133 6-103 (146)
13 2lch_A Protein OR38; structura 99.3 1.3E-12 4.3E-17 91.8 5.9 89 45-133 5-102 (113)
14 3kyj_A CHEA3, putative histidi 99.0 1.8E-09 6E-14 79.3 7.7 90 44-133 9-107 (144)
15 2lp4_A Chemotaxis protein CHEA 98.6 7.9E-08 2.7E-12 74.8 7.1 79 45-123 6-93 (225)
16 2kmf_A Photosystem II 11 kDa p 77.8 9.9 0.00034 26.4 6.9 86 48-134 13-113 (115)
17 2y6x_A PSB27, photosystem II 1 72.4 12 0.0004 25.9 6.1 85 49-134 10-109 (113)
18 2di0_A Activating signal coint 71.5 5 0.00017 25.6 3.8 43 19-63 9-51 (71)
19 3ls0_A SLL1638 protein, PSBQ; 70.2 26 0.00089 24.8 9.1 84 46-141 23-131 (133)
20 2cw9_A Translocase of inner mi 69.5 31 0.0011 25.4 8.9 83 6-109 21-104 (194)
21 3err_A Fusion protein of micro 64.5 28 0.00095 29.9 8.2 87 40-136 117-207 (536)
22 4ioe_A Secreted protein ESXB; 56.3 33 0.0011 21.3 5.8 68 71-141 9-81 (93)
23 1wjt_A Transcription elongatio 55.8 8.9 0.0003 25.9 2.9 40 92-132 11-50 (103)
24 3gwk_C SAG1039, putative uncha 55.4 36 0.0012 21.4 7.1 70 71-141 8-80 (98)
25 2rg8_A Programmed cell death p 54.9 39 0.0013 24.3 6.5 53 1-54 4-56 (165)
26 4igg_A Catenin alpha-1; asymme 52.6 1.2E+02 0.004 27.7 10.4 94 39-135 301-420 (832)
27 1vyk_A Oxygen-evolving enhance 50.1 68 0.0023 23.0 7.4 75 55-138 55-147 (149)
28 3bvo_A CO-chaperone protein HS 49.3 53 0.0018 24.5 6.6 24 100-123 169-192 (207)
29 1gp8_A Protein (scaffolding pr 47.8 36 0.0012 19.1 4.3 22 62-85 17-38 (40)
30 3zbh_A ESXA; unknown function, 43.0 58 0.002 20.2 6.9 68 71-139 9-79 (99)
31 2vs0_A Virulence factor ESXA; 40.5 63 0.0022 19.9 6.9 70 71-141 6-78 (97)
32 3uo3_A J-type CO-chaperone JAC 40.1 91 0.0031 22.7 6.6 40 93-133 132-171 (181)
33 1wcr_A PTS system, N, N'-diace 39.4 84 0.0029 21.0 6.4 42 98-139 21-62 (103)
34 2e2a_A Protein (enzyme IIA); h 38.9 87 0.003 21.0 7.5 44 98-141 23-66 (105)
35 3zsu_A TLL2057 protein, cyanoq 36.1 1.1E+02 0.0038 21.4 7.8 37 98-141 92-128 (130)
36 3zta_A MTR, anti-sigma-factor 35.7 30 0.001 23.8 3.0 65 5-88 57-121 (146)
37 3a7m_A Flagellar protein FLIT; 35.6 1E+02 0.0034 21.1 5.8 22 93-114 12-33 (122)
38 1txp_A HnRNP C, heterogeneous 32.7 55 0.0019 16.9 3.4 25 119-143 2-26 (28)
39 3l8r_A PTCA, putative PTS syst 32.6 1.2E+02 0.0042 20.9 7.5 43 99-141 41-83 (120)
40 3k1s_A PTS system, cellobiose- 32.0 1.2E+02 0.004 20.5 7.5 44 98-141 25-68 (109)
41 2l5g_B Putative uncharacterize 31.5 64 0.0022 18.3 3.4 32 111-142 4-35 (42)
42 3do9_A UPF0302 protein BA_1542 30.4 48 0.0016 24.6 3.6 28 56-85 152-179 (188)
43 1fpo_A HSC20, chaperone protei 30.2 1.3E+02 0.0043 21.6 5.9 40 94-134 124-163 (171)
44 3hho_A CO-chaperone protein HS 30.1 1.5E+02 0.0052 21.2 6.6 76 40-134 91-167 (174)
45 3h3m_A Flagellar protein FLIT; 29.5 1.4E+02 0.0048 20.6 6.1 21 94-114 26-46 (126)
46 2p1h_A APAF-1, apoptotic prote 28.5 91 0.0031 19.6 4.4 39 39-79 50-88 (94)
47 1h3o_B Transcription initiatio 28.1 71 0.0024 20.3 3.7 48 8-68 9-56 (76)
48 3nkz_A Flagellar protein FLIT; 28.0 1.2E+02 0.0042 20.7 5.2 21 94-114 16-36 (123)
49 2wm9_A Dedicator of cytokinesi 27.8 2.5E+02 0.0086 23.0 8.7 47 48-94 307-353 (428)
50 1ug7_A 2610208M17RIK protein; 27.5 46 0.0016 23.4 2.9 46 85-134 1-51 (128)
51 4fla_A Regulation of nuclear P 27.1 1.7E+02 0.0058 20.8 8.7 23 3-25 41-63 (152)
52 2f4m_B UV excision repair prot 23.7 53 0.0018 20.0 2.3 36 26-64 12-47 (61)
53 2nsz_A Programmed cell death p 23.1 1.4E+02 0.0048 20.2 4.8 43 3-50 3-45 (129)
54 2wx3_A MRNA-decapping enzyme 1 22.9 32 0.0011 20.4 1.2 24 39-62 26-49 (51)
55 3ghg_A Fibrinogen alpha chain; 22.5 3.8E+02 0.013 23.2 8.1 40 39-83 47-86 (562)
56 2wx4_A DCP1, decapping protein 21.7 43 0.0015 19.4 1.5 20 40-59 25-44 (46)
57 4abx_A DNA repair protein RECN 21.1 2.3E+02 0.0077 20.0 12.4 99 20-137 14-115 (175)
58 2ion_A PDCD4, programmed cell 21.0 1.6E+02 0.0053 20.7 4.8 43 3-50 5-47 (152)
59 1zs3_A Lactococcus lactis Mg13 20.6 2.4E+02 0.0081 20.4 5.9 99 38-137 52-167 (182)
60 3p9y_A CG14216, LD40846P; phos 20.5 44 0.0015 25.2 1.8 17 88-104 152-168 (198)
61 1ug3_A EIF4GI, eukaryotic prot 20.3 71 0.0024 25.3 3.1 51 2-54 6-57 (339)
No 1
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=100.00 E-value=9.5e-39 Score=238.59 Aligned_cols=141 Identities=28% Similarity=0.499 Sum_probs=137.0
Q ss_pred CCchhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHH
Q 038079 1 MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERIL 80 (144)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~a 80 (144)
|.+.+|+.++..++++++++|+||++|++|+.| +++++|+|+.++|.+|++|+++.+..|+.++++++.|+..++++|
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L--~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~a 78 (153)
T 3us6_A 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQL--QDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHV 78 (153)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHT--CBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccchHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 788999999999999999999999999999999 999999999999999999999999999999998767999999999
Q ss_pred hhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038079 81 HRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAK 143 (144)
Q Consensus 81 H~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~~~ 143 (144)
|+|||||+||||.+|+.+|..+|.+++.++.+++..++.+|+.+|.+++.+|++|+++++|+.
T Consensus 79 H~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~ 141 (153)
T 3us6_A 79 HQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIV 141 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 2
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=100.00 E-value=6.7e-37 Score=227.04 Aligned_cols=140 Identities=25% Similarity=0.473 Sum_probs=133.1
Q ss_pred chhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCC-hhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 038079 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDED-PNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILH 81 (144)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~-~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH 81 (144)
+++|+.|+..++++++++|+||++|++|+.| +++++ |+|+.+||.+|++|+++.+..|+.|++++++|+..+++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~lD~~~~~L~~L--~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH 80 (149)
T 1yvi_A 3 AAALRDQLTALLSSMFSQGLVDEQFQQLQML--QDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVH 80 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHH--HC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHh--hCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 5789999999999999999999999999999 89888 99999999999999999999999999987679999999999
Q ss_pred hhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 038079 82 RFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQAKA 144 (144)
Q Consensus 82 ~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~~~~ 144 (144)
+|||||+||||.+|+.+|.++|..++.++++++..++.+++.+|..++.+|++|+++++|+.+
T Consensus 81 ~LKGssa~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~~~~~L~~~~~~e~q~~~ 143 (149)
T 1yvi_A 81 QLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA 143 (149)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=99.96 E-value=4.9e-30 Score=193.78 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=110.8
Q ss_pred cccchhhhHH-HHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHH
Q 038079 16 HLLDEEILDE-QFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK 94 (144)
Q Consensus 16 ~~~~~~~lD~-~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~ 94 (144)
+|.++|+||+ +|++|+.| ++++ |+|+.+||.+|++|+++++..|++|++ .+.||.+++.+||+||||||||||.+
T Consensus 2 ~~~~~~~LD~~~f~qL~el--~dd~-p~Fv~elV~~F~edse~~l~~L~~AL~-~~~D~~~L~~~aH~LKGSSAnLGA~r 77 (167)
T 2r25_A 2 STIPSEIINWTILNEIISM--DDDD-SDFSKGLIIQFIDQAQTTFAQMQRQLD-GEKNLTELDNLGHFLKGSSAALGLQR 77 (167)
T ss_dssp CCCCSCSSCHHHHHHHHHT--TTTS-SHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCcCCcCHHHHHHHHHh--cccC-chHHHHHHHHHHHhHHHHHHHHHHHHh-cccCHHHHHHHHHhhhhhHHHHHHHH
Confidence 5788999998 69999999 8887 999999999999999999999999999 23599999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC------------HH--------------------------------HHHHHHHHHHHHHHHHHH
Q 038079 95 VKNEVNVVIACCRNGD------------IE--------------------------------GAKAAFEQVKTEQGNLKA 130 (144)
Q Consensus 95 l~~~c~~lE~~~~~~~------------~~--------------------------------~~~~~l~~l~~ef~~~~~ 130 (144)
|+.+|.+||.+|+.++ .+ +|...|.+++.||..++.
T Consensus 78 V~~~C~~le~~~r~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~L~~~k~e~~~~~~ 157 (167)
T 2r25_A 78 IAWVCERIQNLGRKMEHFFPNKTELVNTLSDKSIINGINIDEDDEEIKIQVDDKDENSIYLILIAKALNQSRLEFKLARI 157 (167)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHTTCSSGGGGSSSCTTTTCCCCCCCSSSCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccccccccccccccccccccccchhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 44 789999999999999999
Q ss_pred HHHHHHH
Q 038079 131 KLDSYFE 137 (144)
Q Consensus 131 aL~~~l~ 137 (144)
+|++|++
T Consensus 158 ~L~~~~~ 164 (167)
T 2r25_A 158 ELSKYYN 164 (167)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 9999975
No 4
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=99.89 E-value=3.2e-23 Score=148.42 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=107.7
Q ss_pred ccchhhhHHH-HHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHH
Q 038079 17 LLDEEILDEQ-FVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKV 95 (144)
Q Consensus 17 ~~~~~~lD~~-~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l 95 (144)
+...++||+. +.+|+.+ .|++|+.+++..|++++++.+..|..++..+ |+..+++.||+|||||+|+|+.+|
T Consensus 6 ~~~~~~lD~~~l~~l~~~-----~g~~~~~~ll~~F~~e~~~~l~~L~~a~~~~--d~~~~~~~aH~LKGsa~~lG~~~l 78 (125)
T 2a0b_A 6 SKSEALLDIPMLEQYLEL-----VGPKLITDGLAVFEKMMPGYVSVLESNLTAQ--DKKGIVEEGHKIKGAAGSVGLRHL 78 (125)
T ss_dssp CHHHHHSCHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccccCCHHHHHHHHHH-----hCHHHHHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3456788986 7788877 7899999999999999999999999999976 899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 96 KNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELV 139 (144)
Q Consensus 96 ~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~ 139 (144)
+.+|..+|..++.++.+++..++..|..+|.+++.+|..|+.-.
T Consensus 79 ~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~~ 122 (125)
T 2a0b_A 79 QQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA 122 (125)
T ss_dssp HHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998754
No 5
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=99.81 E-value=3.2e-19 Score=127.62 Aligned_cols=114 Identities=12% Similarity=0.223 Sum_probs=100.7
Q ss_pred cchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHH
Q 038079 18 LDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKN 97 (144)
Q Consensus 18 ~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~ 97 (144)
||..++|++ .+..+ -.|+|++..+++.+|+++.|+.+..|+.+++.+ |++.+.+.+|+|||||+++||.+|..
T Consensus 1 ~~~~~~D~~--~~l~~---~~g~~~L~~~lL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~ 73 (119)
T 3myf_A 1 FDLHTLNWD--LCLTQ---ANHKSNLALEMLKMLLDSLPETVEKIQTALGQN--DQATMLSTIHKLHGASCYCGVPTTQR 73 (119)
T ss_dssp -CTTTCCHH--HHHHH---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHTTTTCHHHHH
T ss_pred CCccccCHH--HHHHH---hCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 466788886 22222 127899999999999999999999999999986 89999999999999999999999999
Q ss_pred HHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 98 EVNVVIACCRNGD-IEGAKAAFEQVKTEQGNLKAKLDSYFEL 138 (144)
Q Consensus 98 ~c~~lE~~~~~~~-~~~~~~~l~~l~~ef~~~~~aL~~~l~~ 138 (144)
+|..||..++.+. .+.....+..+..+...+..+++.|+..
T Consensus 74 ~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 74 LCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999985 5788889999999999999999999873
No 6
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5
Probab=99.78 E-value=2.8e-21 Score=138.48 Aligned_cols=109 Identities=17% Similarity=0.300 Sum_probs=88.6
Q ss_pred hhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHH
Q 038079 21 EILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVN 100 (144)
Q Consensus 21 ~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~ 100 (144)
+.+|+. .|..| +++.||+++.++++.|+++++++|..|+.+.+.+ |+..+.+.+|+|||||+|+||.+|+.+|.
T Consensus 10 ~~~d~~--~l~~L--~~~~g~~~~~e~~~~F~~e~~e~l~~L~~a~~~~--~~~~i~r~aH~LKGsAa~~Ga~~l~~~~~ 83 (120)
T 1y6d_A 10 DVLNQQ--KIEEL--SAEIGSDNVPVLLDIFLGEMDSYIGTLTELQGSE--QLLYLKEISHALKSSAASFGADRLCERAI 83 (120)
T ss_dssp TTTTTT--HHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSHH--HHHHHHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred ccccHH--HHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHcccccc--hHHHHHHHHHHHhhhHHHhCHHHHHHHHH
Confidence 556653 55555 5558899999999999999999999999987765 77889999999999999999999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 101 VVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSY 135 (144)
Q Consensus 101 ~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~ 135 (144)
.+|..+|.|+...+......+...+.+++..+..+
T Consensus 84 ~lE~~~r~g~~~~~~~~~~~l~~~l~~~~d~l~~~ 118 (120)
T 1y6d_A 84 AIDKKAKANQLQEQGMETSEMLALLHITRDAYRSW 118 (120)
T ss_dssp HHHHHHHHHHHCTTTSTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999887755445555555566666666554
No 7
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=99.76 E-value=3.2e-18 Score=123.20 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=96.5
Q ss_pred hhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHH
Q 038079 20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEV 99 (144)
Q Consensus 20 ~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c 99 (144)
.+++|++ .+..+ -.|+|++..+|+.+|+++.|+.+..|+.++..+ |++.+++.+|+|||||+++||.+|..+|
T Consensus 12 ~~~~D~~--~~l~~---a~g~~~La~elL~~fl~~~~~~~~~l~~a~~~~--d~~~l~~~aHkLkGaa~~~Ga~~L~~~c 84 (123)
T 3iqt_A 12 NATLDWQ--LALRQ---AAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGE--NPEGLVDLIHKLHGSCGYSGVPRMKNLC 84 (123)
T ss_dssp GGTCCHH--HHHHH---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred CCccCHH--HHHHH---hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3678875 33333 227799999999999999999999999999986 8899999999999999999999999999
Q ss_pred HHHHHHhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 100 NVVIACCRNGDI-EGAKAAFEQVKTEQGNLKAKLDSYF 136 (144)
Q Consensus 100 ~~lE~~~~~~~~-~~~~~~l~~l~~ef~~~~~aL~~~l 136 (144)
..||..++.|+. +.....+..+..+...+..+.++|+
T Consensus 85 ~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~~ 122 (123)
T 3iqt_A 85 QLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKIL 122 (123)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999864 4778888999999999999998885
No 8
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6
Probab=99.74 E-value=2.2e-18 Score=122.18 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=85.9
Q ss_pred hhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHH
Q 038079 20 EEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEV 99 (144)
Q Consensus 20 ~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c 99 (144)
.+.+|.+ .|..+ ..|+|+|+.+|+.+|++++++.+..|..+ . .|+ ++.||+|||||+||||.+|+.+|
T Consensus 8 ~~~iD~~--~L~~~---~~gd~~~~~elL~~F~~~~~~~l~~L~~a--~--~~~---~~~aH~LKGsA~~iGA~~l~~~c 75 (113)
T 2ooc_A 8 SGAVDFA--YLEGF---AAGDFAVVDEVLALFREQAALWAPMLDPT--H--PGW---KDAVHTVKGAARGVGAFNLGEVC 75 (113)
T ss_dssp -CCSCHH--HHHHH---TTTCHHHHHHHHHHHHHHHHHHGGGCSTT--S--TTH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCcCHH--HHHhH---hCCCHHHHHHHHHHHHHHhHHHHHHHHHh--h--HHH---HHHHHHHHHHHHHcCHHHHHHHH
Confidence 3456654 33333 34789999999999999999999999988 2 254 89999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 100 NVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFEL 138 (144)
Q Consensus 100 ~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~ 138 (144)
..+|..++. ....+..|+..+.+++.+|..+++.
T Consensus 76 ~~lE~~~~~-----~~~~~~~L~~a~~~~~~~l~~~~~~ 109 (113)
T 2ooc_A 76 ERCEAGQES-----LEGVRTALDAALLDIAAYAHEQALR 109 (113)
T ss_dssp HHHHTTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999877 5678899999999999999988763
No 9
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=99.64 E-value=3e-16 Score=111.86 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079 39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF 118 (144)
Q Consensus 39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l 118 (144)
+.+..-.+++.+|+++.++.+..|+.++.++ |+..+++.||+||||++++|+..++.+|.++|..++.++.+.+...+
T Consensus 28 ~k~~~~~d~l~~fl~s~~~Dl~~L~~A~~~~--D~~~l~~~aHrLKGaa~~lG~~~L~~lc~~LE~~~~~~~~~~l~~~i 105 (116)
T 1sr2_A 28 NAQLHASGYYALFVDTVPDDVKRLYTEAATS--DFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYI 105 (116)
T ss_dssp HHHHHHHTTHHHHTTTHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cchhchHHHHHHHHHHhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4456788999999999999999999999986 89999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHH
Q 038079 119 EQVKTEQGNL 128 (144)
Q Consensus 119 ~~l~~ef~~~ 128 (144)
..|+..+.++
T Consensus 106 ~~L~~~l~~L 115 (116)
T 1sr2_A 106 SDIDSYVKSL 115 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888876654
No 10
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=99.55 E-value=7.4e-15 Score=101.77 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcc------CCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHH
Q 038079 44 VEVTINVYFEESNELLPMIEDLLGK------NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGA 114 (144)
Q Consensus 44 v~~Li~~f~~ds~~~l~~l~~al~~------~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~ 114 (144)
+.+++..|++++++.+..|+.++.. ...++..+.+.+|+|||||+++|+..+..+|..+|... +.+.....
T Consensus 3 ~~~l~~~F~~e~~e~l~~l~~~l~~le~~~~~~~~~~~l~r~~HtLKGsa~~~G~~~l~~la~~lE~~l~~~r~~~~~~~ 82 (105)
T 1tqg_A 3 HMEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKIT 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhhHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4789999999999999999999952 11357899999999999999999999999999999876 67777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038079 115 KAAFEQVKTEQGNLKAKLDS 134 (144)
Q Consensus 115 ~~~l~~l~~ef~~~~~aL~~ 134 (144)
..+++.+...+..++..+..
T Consensus 83 ~~~~~~l~~~~d~l~~~l~~ 102 (105)
T 1tqg_A 83 SDLLDKIFAGVDMITRMVDK 102 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877766654
No 11
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima}
Probab=99.39 E-value=5.2e-13 Score=97.34 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=72.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcc------CCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHHH
Q 038079 45 EVTINVYFEESNELLPMIEDLLGK------NPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGAK 115 (144)
Q Consensus 45 ~~Li~~f~~ds~~~l~~l~~al~~------~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~~ 115 (144)
.+++..|++++++.|..|..++.. +..++..+.+.+|+|||||+++|+..++.+|..+|... +.|......
T Consensus 3 ~ell~~Fl~Ea~e~L~~l~~~l~~le~~~~d~~~~~~l~R~aHTLKGsA~~~G~~~l~~lah~lE~~l~~lr~g~~~~~~ 82 (139)
T 2ld6_A 3 EEYLGVFVDETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNSEIKITS 82 (139)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhHHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 478999999999999999999941 12367899999999999999999999999999999865 666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038079 116 AAFEQVKTEQGNLKAKLDSY 135 (144)
Q Consensus 116 ~~l~~l~~ef~~~~~aL~~~ 135 (144)
..++.+...+..++..+..+
T Consensus 83 ~l~~~l~~~~D~l~~~l~~~ 102 (139)
T 2ld6_A 83 DLLDKIFAGVDMITRMVDKI 102 (139)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555543
No 12
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3
Probab=99.36 E-value=7.7e-13 Score=97.23 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=69.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcc---CC---CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHH---hhcCCHHHHH
Q 038079 45 EVTINVYFEESNELLPMIEDLLGK---NP---IEGSEMERILHRFKGSCASVGANKVKNEVNVVIAC---CRNGDIEGAK 115 (144)
Q Consensus 45 ~~Li~~f~~ds~~~l~~l~~al~~---~~---~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~---~~~~~~~~~~ 115 (144)
.+++..|++++++.|..|+.++.. ++ .++..+.+.+|+|||||+++|+..++.+|..+|.. .+.+......
T Consensus 6 ~ell~~Fl~Ea~e~L~~le~~L~~le~~~~d~~~l~~lfR~aHTLKGsA~~~G~~~l~~lah~lE~~l~~~r~g~~~~~~ 85 (146)
T 1i5n_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (146)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhHhHHccCHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 478999999999999999999933 11 24589999999999999999999999999999987 6777655445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038079 116 AAFEQVKTEQGNLKAKLD 133 (144)
Q Consensus 116 ~~l~~l~~ef~~~~~aL~ 133 (144)
.+++.+...+..++..+.
T Consensus 86 ~l~~~l~~~~D~l~~~l~ 103 (146)
T 1i5n_A 86 DIINLFLETKDIMQEQLD 103 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544444
No 13
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima}
Probab=99.34 E-value=1.3e-12 Score=91.80 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=72.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcc---CCC---CHHHHHHHHhhhcccccccChHHHHHHHHHHHH---HhhcCCHHHHH
Q 038079 45 EVTINVYFEESNELLPMIEDLLGK---NPI---EGSEMERILHRFKGSCASVGANKVKNEVNVVIA---CCRNGDIEGAK 115 (144)
Q Consensus 45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~---D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~---~~~~~~~~~~~ 115 (144)
.+++..|+++++++|..|..++.. ++. ++..+.+.+|+|||||+++|...++.+|..+|. ..+.+......
T Consensus 5 ~el~~~F~~Ea~e~l~~l~~~l~~le~~~~d~~~~~~l~R~~HTlKGsa~~~G~~~l~~lah~~E~~l~~~r~~~~~~~~ 84 (113)
T 2lch_A 5 QEYIKKVTDELKELIQNVNDDIKEVEKNPEDMEYWNKIYRLVHTMKEITETMGFSSVAKVLHTIMNLVDKMLNSEIKITS 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSTTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 588999999999999999999843 112 356799999999999999999999999999996 44677766667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038079 116 AAFEQVKTEQGNLKAKLD 133 (144)
Q Consensus 116 ~~l~~l~~ef~~~~~aL~ 133 (144)
.+++.+...+..+...+.
T Consensus 85 ~l~~~l~~~~d~l~~~l~ 102 (113)
T 2lch_A 85 DLIDKVKKKLDMVTRELD 102 (113)
T ss_dssp HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777766665554
No 14
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=98.96 E-value=1.8e-09 Score=79.29 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHH
Q 038079 44 VEVTINVYFEESNELLPMIEDLLGK---NPIE---GSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGA 114 (144)
Q Consensus 44 v~~Li~~f~~ds~~~l~~l~~al~~---~~~D---~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~ 114 (144)
..+++..|+++++++|..|...+.. ++.| ...+.+.+|+|||||+.+|...+..+|-.+|..- +.+...--
T Consensus 9 ~~ell~~FleEa~E~L~~le~~Ll~le~~~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~ 88 (144)
T 3kyj_A 9 MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMD 88 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4689999999999999999998753 2223 4579999999999999999999999999999854 55543333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038079 115 KAAFEQVKTEQGNLKAKLD 133 (144)
Q Consensus 115 ~~~l~~l~~ef~~~~~aL~ 133 (144)
..+++.+-..+..+...+.
T Consensus 89 ~~l~dlll~~~D~l~~lv~ 107 (144)
T 3kyj_A 89 GEIVEILLFASDTLRAMLE 107 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555554444444333
No 15
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=98.61 E-value=7.9e-08 Score=74.75 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcc---CCCC---HHHHHHHHhhhcccccccChHHHHHHHHHHHHHh---hcCCHHHHH
Q 038079 45 EVTINVYFEESNELLPMIEDLLGK---NPIE---GSEMERILHRFKGSCASVGANKVKNEVNVVIACC---RNGDIEGAK 115 (144)
Q Consensus 45 ~~Li~~f~~ds~~~l~~l~~al~~---~~~D---~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~---~~~~~~~~~ 115 (144)
.++++.|++++.++|..|...+-. ++.| ...+.+.+|+|||||+.+|...+..+|-.+|..- |+|...--.
T Consensus 6 ~~~l~~F~~Ea~e~L~~l~~~Ll~le~~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~ 85 (225)
T 2lp4_A 6 SDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNT 85 (225)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHHCCTTSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 467899999999999999998754 3334 3578899999999999999999999999999765 455433223
Q ss_pred HHHHHHHH
Q 038079 116 AAFEQVKT 123 (144)
Q Consensus 116 ~~l~~l~~ 123 (144)
.+++.+-.
T Consensus 86 ~~~~ll~~ 93 (225)
T 2lp4_A 86 DIINLFLE 93 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 16
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=77.82 E-value=9.9 Score=26.37 Aligned_cols=86 Identities=5% Similarity=0.085 Sum_probs=54.6
Q ss_pred HHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhc-----------ccccccChHHHHHHHHHHHH----HhhcCCHH
Q 038079 48 INVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFK-----------GSCASVGANKVKNEVNVVIA----CCRNGDIE 112 (144)
Q Consensus 48 i~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LK-----------GSSaslGA~~l~~~c~~lE~----~~~~~~~~ 112 (144)
-..|.+|+-..+..|+.+++.+ .|-+..++....+| +....-|-.-...+-..|.. +...|+.+
T Consensus 13 ~~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sf~tm~tAlNaLAGHY~s~g~~P 91 (115)
T 2kmf_A 13 TGNYSQDTLTVIATLREAIDLP-QDAPNRQEVQDTARGQINDYISRYRRKGDAGGLKSFTTMQTALNSLAGYYTSYGARP 91 (115)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHTHHHHCSSSCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCC
Confidence 4568899999999999999874 34344544444443 22233344433333344433 33445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038079 113 GAKAAFEQVKTEQGNLKAKLDS 134 (144)
Q Consensus 113 ~~~~~l~~l~~ef~~~~~aL~~ 134 (144)
--....+.|.+||.++..+|.+
T Consensus 92 lPek~k~Rl~~el~~AE~al~r 113 (115)
T 2kmf_A 92 IPEKLKKRLQLEFTQAERSIER 113 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 5667889999999999988864
No 17
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=72.38 E-value=12 Score=25.89 Aligned_cols=85 Identities=6% Similarity=0.018 Sum_probs=53.8
Q ss_pred HHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhh-----------cccccccChHHHHHHHHHHHHH----hhcCCHHH
Q 038079 49 NVYFEESNELLPMIEDLLGKNPIEGSEMERILHRF-----------KGSCASVGANKVKNEVNVVIAC----CRNGDIEG 113 (144)
Q Consensus 49 ~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~L-----------KGSSaslGA~~l~~~c~~lE~~----~~~~~~~~ 113 (144)
..|.+|+-..+..|+.+++.+ .|-+...+....+ .+....-|-.-...+-..|..+ ...|+.+-
T Consensus 10 ~~Y~~dT~~Vv~~lr~~l~l~-~d~~~~~~a~~~ar~~ind~vsrYRr~~~v~g~~Sfttm~tAlNaLAGHY~s~g~~Pl 88 (113)
T 2y6x_A 10 GNFREDTLALISSLREAIALP-ENDPNKKAAQAEARKKLNDFFALYRRDDSLRSLSSFMTMQTALNSLAGHYSSYPNRPL 88 (113)
T ss_dssp SCHHHHHHHHHHHHHHHHHSC-TTCTTHHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred ccHHHHHHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHHHHHHHhhcCCCCC
Confidence 468889999999999998873 2333333333333 3333444444444444444433 34566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038079 114 AKAAFEQVKTEQGNLKAKLDS 134 (144)
Q Consensus 114 ~~~~l~~l~~ef~~~~~aL~~ 134 (144)
-....+.|.+||.++..+|.+
T Consensus 89 Pek~k~Rl~~el~~AE~al~R 109 (113)
T 2y6x_A 89 PEKLKARLEQEFKQVELALDR 109 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 678889999999999988865
No 18
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=71.54 E-value=5 Score=25.57 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=37.0
Q ss_pred chhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHH
Q 038079 19 DEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIE 63 (144)
Q Consensus 19 ~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~ 63 (144)
+...+++...+++.| -++-|..|+..++..|=.|.++.+..|=
T Consensus 9 ~~~~l~s~I~qV~DL--fPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 9 CGVELDSLISQVKDL--LPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp SSHHHHHHHHHHHHH--CCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--cccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445577778899999 9999999999999999999999887763
No 19
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=70.19 E-value=26 Score=24.82 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=50.9
Q ss_pred HHHHHH---HHhHHHHHHH-HHHHhccCCCCHHHHHHHHhhhcccccccChH---------------------HHHHHHH
Q 038079 46 VTINVY---FEESNELLPM-IEDLLGKNPIEGSEMERILHRFKGSCASVGAN---------------------KVKNEVN 100 (144)
Q Consensus 46 ~Li~~f---~~ds~~~l~~-l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~---------------------~l~~~c~ 100 (144)
+.|..| +.++.+++.+ |...++.+ ||..+|...|.- =+.+|-. .|.+.-.
T Consensus 23 ~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~--~W~~~Rn~IhGP---lg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~ 97 (133)
T 3ls0_A 23 AQLQVYVNPIAVARDGMEKRLQGLIADQ--NWVDTQTYIHGP---LGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLE 97 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTT--CHHHHHHHHHTT---TTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhc--chHHHHHHHhch---HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 445555 3457778888 88888876 899998887743 2233321 1122222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 101 VVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 101 ~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
+|-.+++.+|.. .....|.++...|..|+++.++
T Consensus 98 ~LD~AA~~~n~~-------~a~k~Y~~a~adfdafl~liP~ 131 (133)
T 3ls0_A 98 RLDAAAKDRNGS-------QAKIQYQEALADFDSFLNLLPQ 131 (133)
T ss_dssp HHHHHHHTTCHH-------HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHhcCC
Confidence 333344444433 3567788899999999887543
No 20
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=69.52 E-value=31 Score=25.36 Aligned_cols=83 Identities=11% Similarity=0.172 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHH-HHHHHHHhccCCCCHHHHHHHHhhhc
Q 038079 6 LHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNEL-LPMIEDLLGKNPIEGSEMERILHRFK 84 (144)
Q Consensus 6 l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~-l~~l~~al~~~~~D~~~l~~~aH~LK 84 (144)
+..++.+++.+++...=....+..|+.+ . |+|= ...|++.+... +..|..|..++ |.+.|+.++
T Consensus 21 ~~~~~~~~~~~~f~~s~~~~~l~~i~~~--d----p~Fd---~~~Fl~~ak~~iy~~Iq~A~~~g--D~~~Lr~~~---- 85 (194)
T 2cw9_A 21 LTDKVTDLLGGLFSKTEMSEVLTEILRV--D----PAFD---KDRFLKQCENDIIPNVLEAMISG--ELDILKDWC---- 85 (194)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHH--C----TTCC---HHHHHHHHHHTHHHHHHHHHHHT--CHHHHHHHB----
T ss_pred hhhhhhhhhccccCCCHHHHHHHHHHhh--C----CCCC---HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHhc----
Confidence 3455666667777766666667788877 3 3443 36788889998 69999999987 889999873
Q ss_pred ccccccChHHHHHHHHHHHHHhhcC
Q 038079 85 GSCASVGANKVKNEVNVVIACCRNG 109 (144)
Q Consensus 85 GSSaslGA~~l~~~c~~lE~~~~~~ 109 (144)
.-.-...++.++......|
T Consensus 86 ------t~~~~~~~~~~i~~r~~~g 104 (194)
T 2cw9_A 86 ------YEATYSQLAHPIQQAKALG 104 (194)
T ss_dssp ------CHHHHHHHHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHHHHHHHCC
Confidence 4455556666666655544
No 21
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=64.49 E-value=28 Score=29.93 Aligned_cols=87 Identities=14% Similarity=0.261 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHHh--HHHHHHHHH-HHhccCCCCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhc-CCHHHHH
Q 038079 40 DPNFVEVTINVYFEE--SNELLPMIE-DLLGKNPIEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRN-GDIEGAK 115 (144)
Q Consensus 40 ~~~fv~~Li~~f~~d--s~~~l~~l~-~al~~~~~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~-~~~~~~~ 115 (144)
+++|+..|++ |=.| +++.+..|+ ..+.+++.+++.+++ +|.-|..|..++..+..+..- .......
T Consensus 117 ~~~Fl~~L~~-fdkd~I~~~~~~~l~~~y~~~p~F~~e~v~~---------~S~Aa~~Lc~WV~A~~~Y~~l~~eV~pLk 186 (536)
T 3err_A 117 RENFIPTIVN-FSAEEISDAIREKMKKNYMSNPSYNYEIVNR---------ASLAAGPMVKWAIAQLNYADMLKRVEPLR 186 (536)
T ss_dssp CTTHHHHHHH-CCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH---------HCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-cCcccCCHHHHHHHHHHhcCCCCCCHHHHHH---------HHHHHHHHHHHHHhcchhHHHHHhhhhhH
Confidence 3578877765 5333 466788887 588877666666652 345566788888777766542 2344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038079 116 AAFEQVKTEQGNLKAKLDSYF 136 (144)
Q Consensus 116 ~~l~~l~~ef~~~~~aL~~~l 136 (144)
..+..++.+...+...|+..+
T Consensus 187 ~eLk~lE~eL~e~e~eL~~ll 207 (536)
T 3err_A 187 NELQKLEDDAKDNQQKLEALL 207 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777776654
No 22
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=56.28 E-value=33 Score=21.27 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=38.8
Q ss_pred CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 71 IEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEG-----AKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 71 ~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~-----~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
+|++.|+..|-.+++.+.+|-.. +..+...+..+. +.|.| ....+..+...+.+....|..+-+..++
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~-l~~L~~~~~~L~--~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQ-INRLEGDINSLE--GQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKR 81 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTT--TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--hhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777666543 455555665554 23443 3344445555555555555554444433
No 23
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=55.79 E-value=8.9 Score=25.89 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 038079 92 ANKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKL 132 (144)
Q Consensus 92 A~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL 132 (144)
...+..++..|+.+....+.+.+..+|..|+. +.-+...|
T Consensus 11 e~ev~~i~k~L~k~~~~~~~~~~l~~L~~L~~-~~iT~e~L 50 (103)
T 1wjt_A 11 EEELLRIAKKLEKMVSRKKTEGALDLLKKLNS-CQMSIQLL 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHT-SCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhC-CCCCHHHH
Confidence 56888999999998877777888888888854 44333333
No 24
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=55.35 E-value=36 Score=21.42 Aligned_cols=70 Identities=9% Similarity=0.161 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhh--cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 71 IEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCR--NG-DIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 71 ~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~--~~-~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
+|++.|+..|-.++..+.+|-.. +..+...+..+.. .| ..+.....+.++...+.++...|..+-+..++
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~-l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEV-LNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777776665432 4444555554432 22 34445566666666666666666665554443
No 25
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=54.91 E-value=39 Score=24.28 Aligned_cols=53 Identities=9% Similarity=0.198 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHh
Q 038079 1 MESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEE 54 (144)
Q Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~d 54 (144)
|+.+.+..+..+.++--+..+-+++....+++|+ .+.-.|.||..+|+.-++-
T Consensus 4 ~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~-~p~~~~~~V~~~I~~aldr 56 (165)
T 2rg8_A 4 LDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN-LGEMKSGVPVLAVSLALEG 56 (165)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT-CSGGGGHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC-CcccHHHHHHHHHHHHHcC
Confidence 4566778888888888888888888888888882 1223455666666554443
No 26
>4igg_A Catenin alpha-1; asymmetric dimer, adherens junctions, F-actin binding, cell; 3.66A {Homo sapiens}
Probab=52.62 E-value=1.2e+02 Score=27.66 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhc--------------cccccc-ChHHHHHHHHHHH
Q 038079 39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFK--------------GSCASV-GANKVKNEVNVVI 103 (144)
Q Consensus 39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LK--------------GSSasl-GA~~l~~~c~~lE 103 (144)
-..-.+..+.+.|.+.+..+ ..|..|...+ |-..+...+..|- +.|.|= |...+...|.++|
T Consensus 301 L~~AvvdqvsD~F~dt~~pL-~~Li~Aa~~g--~ee~~~e~a~~F~eha~~lvevA~Lv~~~s~ne~~v~~i~~aa~~le 377 (832)
T 4igg_A 301 LRKAVMDHVSDSFLETNVPL-LVLIEAAKNG--NEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLE 377 (832)
T ss_dssp HHHHHHHHHHHHTSSSSHHH-HHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCchH-HHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 33457778888887655444 4566665555 5555555444433 444332 4556777777777
Q ss_pred HHhh-----------cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 104 ACCR-----------NGDIEGAKAAFEQVKTEQGNLKAKLDSY 135 (144)
Q Consensus 104 ~~~~-----------~~~~~~~~~~l~~l~~ef~~~~~aL~~~ 135 (144)
.+++ +-+...+.+.|+.+.+.|......|...
T Consensus 378 ~L~PQVI~Aar~L~~~P~Sk~A~Enle~f~~~W~~~v~~L~~a 420 (832)
T 4igg_A 378 ALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDA 420 (832)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655 2344566778888888887765555543
No 27
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=50.09 E-value=68 Score=22.98 Aligned_cols=75 Identities=8% Similarity=0.104 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhh--------hcccccccC----------hHHHHHHHHHHHHHhhcCCHHHHHH
Q 038079 55 SNELLPMIEDLLGKNPIEGSEMERILHR--------FKGSCASVG----------ANKVKNEVNVVIACCRNGDIEGAKA 116 (144)
Q Consensus 55 s~~~l~~l~~al~~~~~D~~~l~~~aH~--------LKGSSaslG----------A~~l~~~c~~lE~~~~~~~~~~~~~ 116 (144)
+.+.|.+++..++++ +|..++...|. |+.-.+++. |..|...-.+|..+++.++...+
T Consensus 55 ~a~~i~~vk~lI~k~--~W~~vrn~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a-- 130 (149)
T 1vyk_A 55 SASEILNVKQFIDRK--AWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEA-- 130 (149)
T ss_dssp HHHHHHTTHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred HHHHHHHHHHHhhhc--cHHHHHHHHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH--
Confidence 555666777778765 77777766553 111111111 13344444555666666665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038079 117 AFEQVKTEQGNLKAKLDSYFEL 138 (144)
Q Consensus 117 ~l~~l~~ef~~~~~aL~~~l~~ 138 (144)
+..|.++.+.|+.|+..
T Consensus 131 -----~~~Y~~t~~~ld~vl~~ 147 (149)
T 1vyk_A 131 -----EKYYGQTVSNINEVLAK 147 (149)
T ss_dssp -----HHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHH
Confidence 44666666677666653
No 28
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=49.27 E-value=53 Score=24.49 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=12.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 038079 100 NVVIACCRNGDIEGAKAAFEQVKT 123 (144)
Q Consensus 100 ~~lE~~~~~~~~~~~~~~l~~l~~ 123 (144)
..|..+-..++++.+...+.+++=
T Consensus 169 ~~l~~~~~~~d~~~A~~~v~kL~y 192 (207)
T 3bvo_A 169 DNVSSAFEQDDFEEAKEILTKMRY 192 (207)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333345666666666655554
No 29
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=47.83 E-value=36 Score=19.11 Aligned_cols=22 Identities=14% Similarity=0.280 Sum_probs=16.0
Q ss_pred HHHHhccCCCCHHHHHHHHhhhcc
Q 038079 62 IEDLLGKNPIEGSEMERILHRFKG 85 (144)
Q Consensus 62 l~~al~~~~~D~~~l~~~aH~LKG 85 (144)
|.-|-.. .||+.++.+=|.||+
T Consensus 17 iyvA~se--Gd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 17 MDAAASK--GDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHTT--SCHHHHHHHHHHHTT
T ss_pred HHHHHhc--CCHHHHHHHHHHHHh
Confidence 3344444 489999999999986
No 30
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=43.03 E-value=58 Score=20.19 Aligned_cols=68 Identities=7% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhh--cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 71 IEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCR--NG-DIEGAKAAFEQVKTEQGNLKAKLDSYFELV 139 (144)
Q Consensus 71 ~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~--~~-~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~ 139 (144)
+|++.|+..|-.++..+..|-.. +..+...+..+.. .| ..+.....+.++...+.++...|..+-+..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~-l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L 79 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTEL-IARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQL 79 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666655444321 2333333333321 11 122334444555555555555555544433
No 31
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=40.50 E-value=63 Score=19.91 Aligned_cols=70 Identities=7% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhhcccccccChHHHHHHHHHHHHHhh--cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 71 IEGSEMERILHRFKGSCASVGANKVKNEVNVVIACCR--NG-DIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 71 ~D~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~--~~-~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
+|++.|+..|-.+++.+..|-.. +..+...+..+.. .| ..+.....+.++...+.++...|..+-+..++
T Consensus 6 v~~~~l~~~A~~~~~~~~~l~~~-l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~ 78 (97)
T 2vs0_A 6 MSPEEIRAKSQSYGQGSDQIRQI-LSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNS 78 (97)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777776655432 3344444444322 22 23444556666666666666666665554433
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=40.11 E-value=91 Score=22.66 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 93 NKVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLD 133 (144)
Q Consensus 93 ~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~ 133 (144)
.++..+...|+.+-..++++.+...+.+|+= |.++...+.
T Consensus 132 ~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y-~~kl~~~ik 171 (181)
T 3uo3_A 132 ERIQDIEAQLGQCYNDKDYAAAVKLTVELKY-WYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566666777777777788877777766654 444444443
No 33
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=39.35 E-value=84 Score=21.00 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELV 139 (144)
Q Consensus 98 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~ 139 (144)
.|.+-=..++.|+++.+..++.+-+.++..+...=..+++.+
T Consensus 21 ~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~E 62 (103)
T 1wcr_A 21 LAYAALKQAKQGDFAAAKAMMDQSRMALNEAHLVQTKLIEGD 62 (103)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555668999999999999999999999988777776654
No 34
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=38.90 E-value=87 Score=21.01 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 98 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
.|.+--..++.|+++.+..++.+-+.++..+...=..+++.+-+
T Consensus 23 ~~~eAl~~Ak~g~fe~A~~~l~eA~~~l~~AH~~Qt~liq~Ea~ 66 (105)
T 2e2a_A 23 KLLEALKAAENGDFAKADSLVVEAGSCIAEAHSSQTGMLAREAS 66 (105)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455566899999999999999999999999887788776654
No 35
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=36.08 E-value=1.1e+02 Score=21.41 Aligned_cols=37 Identities=5% Similarity=0.081 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 98 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
.-.+|-.+++.+|... ....|.++...+..|+++.++
T Consensus 92 ~L~~LD~AA~~~n~~~-------a~k~Y~~a~adfdafl~liP~ 128 (130)
T 3zsu_A 92 DFLKIDQGADLDSVTV-------AQEGFREAEADFKAYLNSLPE 128 (130)
T ss_dssp HHHHHHHHHHTTCHHH-------HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHHhccC
Confidence 3345556666666554 456788888888999887654
No 36
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=35.71 E-value=30 Score=23.78 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhc
Q 038079 5 PLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFK 84 (144)
Q Consensus 5 ~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LK 84 (144)
.|..++.+.++-|+.+|.--+. |+ | .+..+++.|+.-..+..-++..|.. =...+| -|-+|
T Consensus 57 elekeiadkvkimfaqgyhiev---lq-l---------ilekildsfisvireqyhdlqaaas----yittvr--dhifk 117 (146)
T 3zta_A 57 ELEKEIADKVKIMFAQGYHIEV---LQ-L---------ILEKILDSFISVIREQYHDLQAAAS----YITTVR--DHIFK 117 (146)
T ss_dssp HHHHHHHHHHHHHHHHTCCTHH---HH-H---------HHHHHHHHHHHHHHHHCCCHHHHHH----HHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHH---HH-H---------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--HHHhc
Confidence 4555666667777766663321 11 2 3566777777655555444444332 112333 38888
Q ss_pred cccc
Q 038079 85 GSCA 88 (144)
Q Consensus 85 GSSa 88 (144)
|.|-
T Consensus 118 gtsf 121 (146)
T 3zta_A 118 GTSF 121 (146)
T ss_dssp HHHH
T ss_pred chHH
Confidence 8773
No 37
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=35.57 E-value=1e+02 Score=21.12 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHH
Q 038079 93 NKVKNEVNVVIACCRNGDIEGA 114 (144)
Q Consensus 93 ~~l~~~c~~lE~~~~~~~~~~~ 114 (144)
..+..+..++=.+++.|+||..
T Consensus 12 q~i~~lS~~ML~aA~~gdWD~L 33 (122)
T 3a7m_A 12 QRIALLSQSLLELAQRGEWDLL 33 (122)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCHHHH
Confidence 3566777888888999998874
No 38
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=32.67 E-value=55 Score=16.91 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 038079 119 EQVKTEQGNLKAKLDSYFELVKQAK 143 (144)
Q Consensus 119 ~~l~~ef~~~~~aL~~~l~~~~~~~ 143 (144)
..|+.|..+.+.....+++...+++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678888888888888888766653
No 39
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.63 E-value=1.2e+02 Score=20.85 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 99 VNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 99 c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
|.+--..+++|+++.+..++.+-+.++.++...=..+++.+-+
T Consensus 41 ~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~AH~~QT~Liq~EA~ 83 (120)
T 3l8r_A 41 VHEAFDAMREKNYILAEQKLQEANDELLKAHQAQTDLLQEYAS 83 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444456789999999999999999999999888888776644
No 40
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=32.01 E-value=1.2e+02 Score=20.49 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=35.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038079 98 EVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDSYFELVKQ 141 (144)
Q Consensus 98 ~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~ 141 (144)
.|.+-=..++.|+++.+..++.+-+.++..+...=..+++.+-+
T Consensus 25 ~~~eAl~~Ak~gdfe~A~~~l~eA~~~l~~AH~~QT~Liq~Ea~ 68 (109)
T 3k1s_A 25 FAMEALQFAKQGKMAEADEAMVKAKEAINEAHHFQTELIQSEAR 68 (109)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444456789999999999999999999999887777776644
No 41
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.52 E-value=64 Score=18.32 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038079 111 IEGAKAAFEQVKTEQGNLKAKLDSYFELVKQA 142 (144)
Q Consensus 111 ~~~~~~~l~~l~~ef~~~~~aL~~~l~~~~~~ 142 (144)
.+...+.++.+-.|++.+...+..|-...++.
T Consensus 4 k~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 4 KEELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788889999999999998887766654
No 42
>3do9_A UPF0302 protein BA_1542/GBAA1542/BAS1430; uncharacterized protein, structural genomics, protein structure initiative, PSI; 2.75A {Bacillus anthracis}
Probab=30.44 E-value=48 Score=24.64 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhhhcc
Q 038079 56 NELLPMIEDLLGKNPIEGSEMERILHRFKG 85 (144)
Q Consensus 56 ~~~l~~l~~al~~~~~D~~~l~~~aH~LKG 85 (144)
.+++..|..||+.+ |-+.+.+++..||-
T Consensus 152 ~~L~~~ID~ALd~~--D~e~F~~Lt~~L~~ 179 (188)
T 3do9_A 152 ERLLKQIDEALDKQ--DKEAFHRLTAELKM 179 (188)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 56789999999987 88999999988873
No 43
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=30.16 E-value=1.3e+02 Score=21.56 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 94 KVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDS 134 (144)
Q Consensus 94 ~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~ 134 (144)
++..+...|..+-..++++.+...+.+++= |.++...+..
T Consensus 124 ~~~~~~~~l~~~~~~~~~~~A~~~~~kl~y-~~kl~~~i~~ 163 (171)
T 1fpo_A 124 MFDTRHQLMVEQLDNETWDAAADTCRKLRF-LDKLRSSAEQ 163 (171)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455666677666677888888887777765 4455555544
No 44
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=30.08 E-value=1.5e+02 Score=21.15 Aligned_cols=76 Identities=11% Similarity=0.161 Sum_probs=43.5
Q ss_pred ChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCC-HHHHHHHHhhhcccccccChHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 038079 40 DPNFVEVTINVYFEESNELLPMIEDLLGKNPIE-GSEMERILHRFKGSCASVGANKVKNEVNVVIACCRNGDIEGAKAAF 118 (144)
Q Consensus 40 ~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D-~~~l~~~aH~LKGSSaslGA~~l~~~c~~lE~~~~~~~~~~~~~~l 118 (144)
+|+|+.++++.- ..|..+-... | -.++..+...++ .++..+...|+.+-..++++.+...+
T Consensus 91 d~~fLme~me~r--------E~le~~~~~~--d~~~~l~~l~~~~~--------~~~~~~~~~l~~~~~~~d~~~A~~~~ 152 (174)
T 3hho_A 91 DPMFLMEQMELR--------EELESVTACA--DPEAALVAFDTKVT--------AMQRHYLAQLQGQLAQSEWLAAADQI 152 (174)
T ss_dssp CHHHHHHHHHHH--------HHHHHHTSSS--SHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH--------HHHHHHhhcc--chHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 467776665542 2333333322 4 345555555554 35667778888888888988887666
Q ss_pred HHHHHHHHHHHHHHHH
Q 038079 119 EQVKTEQGNLKAKLDS 134 (144)
Q Consensus 119 ~~l~~ef~~~~~aL~~ 134 (144)
.+|+= |.++...+..
T Consensus 153 ~kL~f-~~kl~~~i~~ 167 (174)
T 3hho_A 153 RKLKF-IAKLKNEVER 167 (174)
T ss_dssp HHHHH-HHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHH
Confidence 66543 4444444433
No 45
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=29.54 E-value=1.4e+02 Score=20.56 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhcCCHHHH
Q 038079 94 KVKNEVNVVIACCRNGDIEGA 114 (144)
Q Consensus 94 ~l~~~c~~lE~~~~~~~~~~~ 114 (144)
.+..+..++=.+++.|+||..
T Consensus 26 ~Il~lS~~ML~aA~~gdWD~L 46 (126)
T 3h3m_A 26 DIANLTSRMLAAANASNWDLV 46 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCcHHHH
Confidence 466777888888899998874
No 46
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=28.52 E-value=91 Score=19.60 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHH
Q 038079 39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERI 79 (144)
Q Consensus 39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~ 79 (144)
...+=+..|++.-..-++.-....-.+|... +++.+.+.
T Consensus 50 t~~~kar~Lld~l~~kG~~af~~F~~aL~~~--~~~~La~~ 88 (94)
T 2p1h_A 50 TQQQRAAMLIKMILKKDNDSYVSFYNALLHE--GYKDLAAL 88 (94)
T ss_dssp SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHHHc--CHHHHHHH
Confidence 3345566666666666666666666666542 44444433
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=28.09 E-value=71 Score=20.26 Aligned_cols=48 Identities=10% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHHHhcc
Q 038079 8 QQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIEDLLGK 68 (144)
Q Consensus 8 ~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~ 68 (144)
.+|.++++.+.-...+|+ .-.+++.++.+.|++++-..--.+..-=..
T Consensus 9 ~~L~~Lv~~idp~~~ld~-------------~vee~ll~lADdFV~~V~~~ac~lAKhR~s 56 (76)
T 1h3o_B 9 KKLQDLVREVDPNEQLDE-------------DVEEMLLQIADDFIESVVTAACQLARHRKS 56 (76)
T ss_dssp HHHHHHHHHHCSSCCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCCH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666666544344443 234678899999999988776666554443
No 48
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=28.04 E-value=1.2e+02 Score=20.68 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhhcCCHHHH
Q 038079 94 KVKNEVNVVIACCRNGDIEGA 114 (144)
Q Consensus 94 ~l~~~c~~lE~~~~~~~~~~~ 114 (144)
.+..+..++=.+++.|+||..
T Consensus 16 ~il~lS~~ML~aA~~gdWD~L 36 (123)
T 3nkz_A 16 QILTLSEQMLVLATEGNWDAL 36 (123)
T ss_dssp HHHHHHHHHHHHHTTSCTTHH
T ss_pred HHHHHHHHHHHHHHHCcHHHH
Confidence 456677888888999998874
No 49
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=27.81 E-value=2.5e+02 Score=22.96 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccChHH
Q 038079 48 INVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGANK 94 (144)
Q Consensus 48 i~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA~~ 94 (144)
|+.=+++......+|...+.+++.|...|.......=+++.|=|-..
T Consensus 307 iE~Aie~i~~k~~eL~~~~~~~~~d~~~L~~~LqG~v~~~Vn~G~~~ 353 (428)
T 2wm9_A 307 IEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLA 353 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHSCSSSCCTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccCccCCcHHH
Confidence 45556667777777777777666677766655554444455544443
No 50
>1ug7_A 2610208M17RIK protein; hypothetical protein FLJ12806, four helical UP-and-DOWN bundle, structural genomics; NMR {Mus musculus} SCOP: a.24.24.1
Probab=27.52 E-value=46 Score=23.40 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=25.8
Q ss_pred ccccccChH-----HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 85 GSCASVGAN-----KVKNEVNVVIACCRNGDIEGAKAAFEQVKTEQGNLKAKLDS 134 (144)
Q Consensus 85 GSSaslGA~-----~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ef~~~~~aL~~ 134 (144)
|||++-|.. .|..++..++..+... ..-++++. ..+|+++...|.+
T Consensus 1 ~~~~~~~Ms~~~~~~v~kW~~sl~Ka~dfD---sWGQvvEA-~deY~~La~~lkk 51 (128)
T 1ug7_A 1 GSSGSSGMSEVTRSLLQRWGASLRRGADFD---SWGQLVEA-IDEYQILARHLQK 51 (128)
T ss_dssp CCSCSSSCCSHHHHHHHHHHHHHHHHHHHH---HHTCHHHH-HHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHH-HHHHHHHHHHHHH
Confidence 566666643 5667777777777543 33333333 3356666555543
No 51
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.08 E-value=1.7e+02 Score=20.78 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHhcccchhhhHH
Q 038079 3 SNPLHQQIASMRQHLLDEEILDE 25 (144)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~ 25 (144)
.++.++++.++...+.+..+|+.
T Consensus 41 Da~vrq~Ia~LP~eVsd~s~l~k 63 (152)
T 4fla_A 41 DATVRQKIASLPQEVQDVSLLEK 63 (152)
T ss_dssp HHHHHHHHHTSCGGGTCGGGGGG
T ss_pred hHHHHHHHHcCCccccCHHHHHH
Confidence 45677777777777777777764
No 52
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=23.72 E-value=53 Score=19.97 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=26.9
Q ss_pred HHHHHHcChhcCCCChhHHHHHHHHHHHhHHHHHHHHHH
Q 038079 26 QFVELEGLALASDEDPNFVEVTINVYFEESNELLPMIED 64 (144)
Q Consensus 26 ~~~~L~~L~~~~~~~~~fv~~Li~~f~~ds~~~l~~l~~ 64 (144)
+|.++|.+. . .+|+.+..++...-..-|++++.|.+
T Consensus 12 qf~~lR~~v--q-~NP~~L~~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 12 QFQQMRQII--Q-QNPSLLPALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHH--H-HCGGGHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHH--H-HCHHHHHHHHHHHHhHCHHHHHHHHH
Confidence 688888883 2 46888888888877777777766643
No 53
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.10 E-value=1.4e+02 Score=20.19 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHH
Q 038079 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINV 50 (144)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~ 50 (144)
.+.+..+...+++--+..|-+++...-+++| +-|.|..+++..
T Consensus 3 ~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL-----~~p~f~~e~V~~ 45 (129)
T 2nsz_A 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKEL-----EVPHFHHELVYE 45 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----TCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHh-----CCCccHHHHHHH
Confidence 4567778888888888888888888888888 456666655554
No 54
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=22.95 E-value=32 Score=20.38 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=15.6
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHH
Q 038079 39 EDPNFVEVTINVYFEESNELLPMI 62 (144)
Q Consensus 39 ~~~~fv~~Li~~f~~ds~~~l~~l 62 (144)
.+++|+..|-+.|+....+.+..+
T Consensus 26 nD~~Fl~~IHeAYl~sl~~~~~n~ 49 (51)
T 2wx3_A 26 NDSSFLSTLHEVYLQVLTKNKDNH 49 (51)
T ss_dssp HCHHHHHHHHHHHHHTTC------
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcc
Confidence 347899999999999877766554
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.49 E-value=3.8e+02 Score=23.22 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=28.8
Q ss_pred CChhHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhh
Q 038079 39 EDPNFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRF 83 (144)
Q Consensus 39 ~~~~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~L 83 (144)
.|..+ ..+|...-.|...+|.+|++.++ |+.+-+.-++..
T Consensus 47 SGCrL-QglLdkqErDltkrINELKnqLE----dlsKnsKdseqy 86 (562)
T 3ghg_A 47 SGCRM-KGLIDEVNQDFTNRINKLKNSLF----EYQKNNKDSHSL 86 (562)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHH
T ss_pred cccch-hhhHHhhcCcHHHHHHHHHHHHH----HHHhhchhHHHH
Confidence 34443 57788888888888888888887 566666666654
No 56
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=21.71 E-value=43 Score=19.41 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHhHHHHH
Q 038079 40 DPNFVEVTINVYFEESNELL 59 (144)
Q Consensus 40 ~~~fv~~Li~~f~~ds~~~l 59 (144)
+++|+..|-+.|+....+.+
T Consensus 25 D~~Fl~~iHeAYl~sl~~~l 44 (46)
T 2wx4_A 25 DKEFANKLHKAYLNGCSNLL 44 (46)
T ss_dssp CTTHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 47899999999998877765
No 57
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.06 E-value=2.3e+02 Score=20.04 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHcChhcCCCCh-hHHHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHhhhcccccccCh-HHHHH
Q 038079 20 EEILDEQFVELEGLALASDEDP-NFVEVTINVYFEESNELLPMIEDLLGKNPIEGSEMERILHRFKGSCASVGA-NKVKN 97 (144)
Q Consensus 20 ~~~lD~~~~~L~~L~~~~~~~~-~fv~~Li~~f~~ds~~~l~~l~~al~~~~~D~~~l~~~aH~LKGSSaslGA-~~l~~ 97 (144)
..+|-+++.+|..+ .+..|. +-+..- ..-+..+.++...+..++.. |.|+. .|+ ..|..
T Consensus 14 ~d~L~~ql~El~~~--~l~~gE~eeLe~e-~~rL~nae~l~~~~~~a~~~--------------L~~~e--~~~~~~L~~ 74 (175)
T 4abx_A 14 IDLLAFQVQEISEV--SPDPGEEEGLNTE-LSRLSNLHTIAQAAAGGVEL--------------LSDGD--LNAAGLIGE 74 (175)
T ss_dssp HHHHHHHHHHHHHH--CCCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--------------HTTSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCCChHHHHHHH-HHHHHCHHHHHHHHHHHHHH--------------HhCCc--chHHHHHHH
Confidence 35677788899999 443232 222221 22355566666555554431 22221 123 23444
Q ss_pred HHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 98 EVNVVIACCRNG-DIEGAKAAFEQVKTEQGNLKAKLDSYFE 137 (144)
Q Consensus 98 ~c~~lE~~~~~~-~~~~~~~~l~~l~~ef~~~~~aL~~~l~ 137 (144)
....|+.++... .+......+..+..+...+...|.+|+.
T Consensus 75 a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~ 115 (175)
T 4abx_A 75 AVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAE 115 (175)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555433 2444455555555555555555555543
No 58
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.96 E-value=1.6e+02 Score=20.69 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCCCChhHHHHHHHH
Q 038079 3 SNPLHQQIASMRQHLLDEEILDEQFVELEGLALASDEDPNFVEVTINV 50 (144)
Q Consensus 3 ~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~fv~~Li~~ 50 (144)
.+.+..+...+++--+..|-+++...-+++| +-|.|..++|..
T Consensus 5 ~eel~kki~~lL~EY~~~~D~~EA~~cl~EL-----~~p~f~~e~V~~ 47 (152)
T 2ion_A 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKEL-----EVPHFHHELVYE 47 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----TCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh-----CCCcchHHHHHH
Confidence 4567778888888888888888888888888 446666555554
No 59
>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1
Probab=20.65 E-value=2.4e+02 Score=20.42 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=62.1
Q ss_pred CCChhHHHHHHHHHHHhHHHHHHHHHHHhcc----CCCCHHHHHHHHhhhcccccc--c-ChHHHHHHHHHHHHHh----
Q 038079 38 DEDPNFVEVTINVYFEESNELLPMIEDLLGK----NPIEGSEMERILHRFKGSCAS--V-GANKVKNEVNVVIACC---- 106 (144)
Q Consensus 38 ~~~~~fv~~Li~~f~~ds~~~l~~l~~al~~----~~~D~~~l~~~aH~LKGSSas--l-GA~~l~~~c~~lE~~~---- 106 (144)
-.||.| ..+++.+.++....+..|.+-+.+ ++.-+..+.+.-=++|-..+. . +-.-|..+...++...
T Consensus 52 V~G~~F-H~~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s~i~e~~~~~~~~~~e~l~~L~~d~~~~~~~~r 130 (182)
T 1zs3_A 52 AKSPVK-CEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFITEDPKAKYWTDEDLLESFIVDFQAQNMFIT 130 (182)
T ss_dssp CSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEChhH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 468999 999999999999999999887776 333445555440137766654 2 3345555544443332
Q ss_pred ------hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038079 107 ------RNGDIEGAKAAFEQVKTEQGNLKAKLDSYFE 137 (144)
Q Consensus 107 ------~~~~~~~~~~~l~~l~~ef~~~~~aL~~~l~ 137 (144)
...+-..-..++..+-.++++..=-|+.++.
T Consensus 131 ~~i~~A~e~~D~~Tadll~~~~~~~EK~~WmL~a~L~ 167 (182)
T 1zs3_A 131 RAIKLANKEEKFALAAGVVELYGYNLQVIRNLAGDLG 167 (182)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2223344466777777777777666666653
No 60
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A
Probab=20.49 E-value=44 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=15.8
Q ss_pred cccChHHHHHHHHHHHH
Q 038079 88 ASVGANKVKNEVNVVIA 104 (144)
Q Consensus 88 aslGA~~l~~~c~~lE~ 104 (144)
|.+||..+.++|..|+.
T Consensus 152 A~~Ga~~ileL~~~l~~ 168 (198)
T 3p9y_A 152 ALMGAFVITDMINMMAK 168 (198)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999999987
No 61
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.25 E-value=71 Score=25.25 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHHhcccchhhhHHHHHHHHcChhcCC-CChhHHHHHHHHHHHh
Q 038079 2 ESNPLHQQIASMRQHLLDEEILDEQFVELEGLALASD-EDPNFVEVTINVYFEE 54 (144)
Q Consensus 2 ~~~~l~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~-~~~~fv~~Li~~f~~d 54 (144)
+.+.+..+...+++-.+..|-+++...-+++| ..+ --++||..+|...++-
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el--~~p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQEL--ASPSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT--CCGGGHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHc--CCcccHHHHHHHHHHHHhCC
Confidence 45667778888888878888888888888888 332 3346677777766664
Done!