BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038081
         (171 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
           Methylesterase And Its Inhibitor Protein
          Length = 153

 Score = 33.9 bits (76), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 17/124 (13%)

Query: 13  FIRNSCRATRYPALCVQCL-SGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGKLT---- 67
            I   C  TR P+LC+Q L S    A ++   L                  +  LT    
Sbjct: 5   LISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQAT 64

Query: 68  --KVRGIKKREFLAVKDCIENMGDGVDRLSQSVREL---GHVGRATWVSAALTDENTCLD 122
             K++G         + C EN  D +D L Q+ + L    +     + SAA     TC D
Sbjct: 65  DPKLKG-------RYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCED 117

Query: 123 GFDG 126
            F+G
Sbjct: 118 SFEG 121


>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
           Methylesterase Inhibitor From Arabidopsis
 pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
           Methylesterase Inhibitor From Arabidopsis
          Length = 152

 Score = 30.8 bits (68), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 18  CRATRYPALCVQCLSGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGKLTKV--RGIKKR 75
           C  T  P+ C++ L+    A  N   LA T               + KL  +   G+  R
Sbjct: 11  CDKTLNPSFCLKFLN-TKFASANLQALAKTTLDSTQARATQT---LKKLQSIIDGGVDPR 66

Query: 76  EFLAVKDCIENMGDGVDRLSQSVRELGH---VGRATWVSAALTDENTCLDGFDG-RFMDG 131
             LA + C++     +  L ++   L     +G    VSAAL   +TCLD     R +D 
Sbjct: 67  SKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDS 126

Query: 132 NV--KAAIRRRVTNVAQVTSNAL 152
           +V   +   + +  +A V SN L
Sbjct: 127 SVVNNSKTIKNLCGIALVISNML 149


>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
 pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
 pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
          Length = 153

 Score = 30.8 bits (68), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 18  CRATRYPALCVQCLSGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGKLTKV--RGIKKR 75
           C  T  P+ C++ L+    A  N   LA T               + KL  +   G+  R
Sbjct: 12  CDKTLNPSFCLKFLN-TKFASPNLQALAKTTLDSTQARATQT---LKKLQSIIDGGVDPR 67

Query: 76  EFLAVKDCIENMGDGVDRLSQSVRELGH---VGRATWVSAALTDENTCLDGFDG-RFMDG 131
             LA + C++     +  L ++   L     +G    VSAAL   +TCLD     R +D 
Sbjct: 68  SKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDS 127

Query: 132 NV--KAAIRRRVTNVAQVTSNAL 152
           +V   +   + +  +A V SN L
Sbjct: 128 SVVNNSKTIKNLCGIALVISNML 150


>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
           Methylesterase Inhibitor From Arabidopsis
          Length = 153

 Score = 30.8 bits (68), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 18  CRATRYPALCVQCLSGYGHAIRNEHQLAVTXXXXXXXXXXXXXXFVGKLTKV--RGIKKR 75
           C  T  P+ C++ L+    A  N   LA T               + KL  +   G+  R
Sbjct: 12  CDKTLNPSFCLKFLN-TKFASANLQALAKTTLDSTQARATQT---LKKLQSIIDGGVDPR 67

Query: 76  EFLAVKDCIENMGDGVDRLSQSVRELGH---VGRATWVSAALTDENTCLDGFDG-RFMDG 131
             LA + C++     +  L ++   L     +G    VSAAL   +TCLD     R +D 
Sbjct: 68  SKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDS 127

Query: 132 NV--KAAIRRRVTNVAQVTSNAL 152
           +V   +   + +  +A V SN L
Sbjct: 128 SVVNNSKTIKNLCGIALVISNML 150


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,235,911
Number of Sequences: 62578
Number of extensions: 132136
Number of successful extensions: 268
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 7
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)