BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038082
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1W163|RF2_CAMJJ Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:23/36 (strain 81-176) GN=prfB PE=3
SV=1
Length = 365
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 76
+D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 77 LKVRSSVNLDAYSPPPQLHQI 97
+K + S N S HQI
Sbjct: 300 MKQQDSANTGEKSEIGWGHQI 320
>sp|Q5HSX6|RF2_CAMJR Peptide chain release factor 2 OS=Campylobacter jejuni (strain
RM1221) GN=prfB PE=3 SV=1
Length = 365
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 76
+D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 77 LKVRSSVNLDAYSPPPQLHQI 97
+K + S N S HQI
Sbjct: 300 MKQQDSANTGEKSEIGWGHQI 320
>sp|Q9PMK5|RF2_CAMJE Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=prfB PE=3
SV=1
Length = 365
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 76
+D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 77 LKVRSSVNLDAYSPPPQLHQI 97
+K + S N S HQI
Sbjct: 300 MKQQDSANTGEKSEIGWGHQI 320
>sp|A8FNC2|RF2_CAMJ8 Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=prfB
PE=3 SV=1
Length = 365
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 76
+D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 77 LKVRSSVNLDAYSPPPQLHQI 97
+K + S N S HQI
Sbjct: 300 MKQQDSANAGEKSEIGWGHQI 320
>sp|A7ZE19|RF2_CAMC1 Peptide chain release factor 2 OS=Campylobacter concisus (strain
13826) GN=prfB PE=3 SV=1
Length = 366
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLR 72
++ ++D Y++SG GGQH NK ESA+R+ H PTG++ Q DRSQHKNRA+A+ SRL
Sbjct: 236 KDLKIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRLY 295
Query: 73 TLLALKVRSSVNLDAYSPPPQLHQI 97
L +K + + N S HQI
Sbjct: 296 ELELMKQQEASNSVEKSEIGWGHQI 320
>sp|A7H5G4|RF2_CAMJD Peptide chain release factor 2 OS=Campylobacter jejuni subsp.
doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=prfB
PE=3 SV=1
Length = 365
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 76
+D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 77 LKVRSSVNLDAYSPPPQLHQI 97
+K + S N S HQI
Sbjct: 300 MKQQDSANSSEKSEIGWGHQI 320
>sp|Q30TP0|RF2_SULDN Peptide chain release factor 2 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfB PE=3 SV=1
Length = 365
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 43/59 (72%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
R+ +D Y+SSG GGQH NK ESA+R+ H TGV+ Q DRSQHKNRA+A+ L++ L
Sbjct: 236 RDIRVDTYRSSGAGGQHVNKTESAIRITHIATGVVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|Q89AC4|RF2_BUCBP Peptide chain release factor 2 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=prfB PE=3 SV=2
Length = 366
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 44/59 (74%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
R+ ++D Y++SG GGQH NK ESAVR++H PTG++ Q DRSQHKN+ A+ +L+ L
Sbjct: 238 RDLKIDVYRASGAGGQHVNKTESAVRIRHLPTGIVVQCQNDRSQHKNKDQAMKQLKAKL 296
>sp|P55999|RF2_HELPY Peptide chain release factor 2 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=prfB PE=3 SV=1
Length = 363
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLAL 77
D Y+SSG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL S+L L
Sbjct: 241 DYYRSSGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELE 300
Query: 78 KVRSSVNLDAYSPPPQLHQI 97
K +SS + S HQI
Sbjct: 301 KQQSSAKNEEKSEIGWGHQI 320
>sp|A0RQM7|RF2_CAMFF Peptide chain release factor 2 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=prfB PE=3 SV=1
Length = 369
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Query: 11 TDDELFRECE-----MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRA 65
DD++ E E +D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+A
Sbjct: 225 VDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITHIPTGIVVQCQNDRSQHKNKA 284
Query: 66 SAL----SRLRTLLALKVRSSVNLDAYSPPPQLHQI----LPPKSTIRSSEVGP 111
+A+ SRL +K + + N S HQI L P ++ + G
Sbjct: 285 TAMKMLKSRLYEFELMKQQEANNAIEKSEIGWGHQIRSYVLFPYQQVKDTRSGE 338
>sp|A5IED7|RF1_LEGPC Peptide chain release factor 1 OS=Legionella pneumophila (strain
Corby) GN=prfA PE=3 SV=1
Length = 362
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 3 VLPNYLELTDDELF-RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQH 61
++P E+ D ++ + +D Y+SSG GGQH NK +SA+R+ H PTGV+ + ++RSQH
Sbjct: 207 IMPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
Query: 62 KNRASALSRLRTLLALKVRSSVNLDAYSPPPQLHQILPPKSTIRSSEVGPQIGPNN 117
KNRA A+S L+T L LDA + Q KS + + + +I N
Sbjct: 267 KNRAKAMSLLKTRL---------LDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYN 313
>sp|Q5WUB1|RF1_LEGPL Peptide chain release factor 1 OS=Legionella pneumophila (strain
Lens) GN=prfA PE=3 SV=1
Length = 362
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 3 VLPNYLELTDDELF-RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQH 61
++P E+ D ++ + +D Y+SSG GGQH NK +SA+R+ H PTGV+ + ++RSQH
Sbjct: 207 IMPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
Query: 62 KNRASALSRLRTLLALKVRSSVNLDAYSPPPQLHQILPPKSTIRSSEVGPQIGPNN 117
KNRA A+S L+T L LDA + Q KS + + + +I N
Sbjct: 267 KNRAKAMSLLKTRL---------LDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYN 313
>sp|Q5ZT29|RF1_LEGPH Peptide chain release factor 1 OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=prfA PE=3 SV=1
Length = 362
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 3 VLPNYLELTDDELF-RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQH 61
++P E+ D ++ + +D Y+SSG GGQH NK +SA+R+ H PTGV+ + ++RSQH
Sbjct: 207 IMPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
Query: 62 KNRASALSRLRTLLALKVRSSVNLDAYSPPPQLHQILPPKSTIRSSEVGPQIGPNN 117
KNRA A+S L+T L LDA + Q KS + + + +I N
Sbjct: 267 KNRAKAMSLLKTRL---------LDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYN 313
>sp|Q5X2V3|RF1_LEGPA Peptide chain release factor 1 OS=Legionella pneumophila (strain
Paris) GN=prfA PE=3 SV=1
Length = 362
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 3 VLPNYLELTDDELF-RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQH 61
++P E+ D ++ + +D Y+SSG GGQH NK +SA+R+ H PTGV+ + ++RSQH
Sbjct: 207 IMPEVDEINDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRITHIPTGVVVECQDERSQH 266
Query: 62 KNRASALSRLRTLLALKVRSSVNLDAYSPPPQLHQILPPKSTIRSSEVGPQIGPNN 117
KNRA A+S L+T L LDA + Q KS + + + +I N
Sbjct: 267 KNRAKAMSLLKTRL---------LDAEVSKQKQEQAQTRKSLVGTGDRSERIRTYN 313
>sp|B9KEY7|RF2_CAMLR Peptide chain release factor 2 OS=Campylobacter lari (strain RM2100
/ D67 / ATCC BAA-1060) GN=prfB PE=3 SV=1
Length = 366
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLA 76
+D Y++SG GGQH NK ESAVR+ H P+G++ Q DRSQHKN+A+A SRL L
Sbjct: 240 IDYYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNDRSQHKNKATAFKMLKSRLYELEL 299
Query: 77 LKVRSSVNLDAYSPPPQLHQI----LPPKSTI---RSSEVGPQI 113
+K + N S HQI L P + RS+E Q+
Sbjct: 300 MKQQDEANSSEKSEIGWGHQIRSYVLFPYQQVKDTRSNEAFSQV 343
>sp|A6Q582|RF2_NITSB Peptide chain release factor 2 OS=Nitratiruptor sp. (strain
SB155-2) GN=prfB PE=3 SV=1
Length = 368
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 44/59 (74%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
++ +D Y++SG GGQH NK +SA+R+ H PTG++ Q DRSQHKNRA+A+ L++ L
Sbjct: 236 KDIRVDTYRASGAGGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRL 294
>sp|Q9ZMR1|RF2_HELPJ Peptide chain release factor 2 OS=Helicobacter pylori (strain J99)
GN=prfB PE=3 SV=1
Length = 363
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLAL 77
D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL S+L L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELE 300
Query: 78 KVRSSVNLDAYSPPPQLHQI 97
K +SS + S HQI
Sbjct: 301 KQQSSAKNEEKSEIGWGHQI 320
>sp|Q1CUY8|RF2_HELPH Peptide chain release factor 2 OS=Helicobacter pylori (strain
HPAG1) GN=prfB PE=3 SV=1
Length = 363
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLAL 77
D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL S+L L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELE 300
Query: 78 KVRSSVNLDAYSPPPQLHQI 97
K +SS + S HQI
Sbjct: 301 KQQSSAKNEEKSEIGWGHQI 320
>sp|B5Z9U4|RF2_HELPG Peptide chain release factor 2 OS=Helicobacter pylori (strain G27)
GN=prfB PE=3 SV=1
Length = 363
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASAL----SRLRTLLAL 77
D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL S+L L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELE 300
Query: 78 KVRSSVNLDAYSPPPQLHQI 97
K +SS + S HQI
Sbjct: 301 KQQSSAKNEEKSEIGWGHQI 320
>sp|Q7VIE6|RF2_HELHP Peptide chain release factor 2 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfB PE=3 SV=1
Length = 366
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Query: 12 DDELFRECE-----MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRAS 66
DD++ E E +D Y++SG GGQH NK ESA+R+ H PTG++ Q DRSQHKN+A+
Sbjct: 226 DDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHFPTGIVVQCQNDRSQHKNKAT 285
Query: 67 ALSRLRTLL 75
A+ L++ L
Sbjct: 286 AMKMLKSKL 294
>sp|B6JPR7|RF2_HELP2 Peptide chain release factor 2 OS=Helicobacter pylori (strain P12)
GN=prfB PE=3 SV=1
Length = 363
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|B2US00|RF2_HELPS Peptide chain release factor 2 OS=Helicobacter pylori (strain
Shi470) GN=prfB PE=3 SV=1
Length = 363
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|Q17YT5|RF2_HELAH Peptide chain release factor 2 OS=Helicobacter acinonychis (strain
Sheeba) GN=prfB PE=3 SV=1
Length = 363
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 22 DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
D Y++SG GGQH NK ESAVR+ H PTG++ Q DRSQHKN+ASAL L++ L
Sbjct: 241 DYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKASALKMLKSKL 294
>sp|A8EWG5|RF2_ARCB4 Peptide chain release factor 2 OS=Arcobacter butzleri (strain
RM4018) GN=prfB PE=3 SV=1
Length = 365
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
++ +D Y++SG GGQH NK ESA+R+ H PTG++ Q DRSQHKN+ SA L++ L
Sbjct: 236 KDIRIDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKDSAFKMLKSRL 294
>sp|Q7MAP4|RF2_WOLSU Peptide chain release factor 2 OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=prfB PE=3 SV=1
Length = 368
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
++ +D Y++SG GGQH NK ESA+R+ H PTG++ Q DRSQHKN+A+A L++ L
Sbjct: 236 KDLRLDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQNDRSQHKNKATAFKMLKSRL 294
>sp|A7I0P7|RF2_CAMHC Peptide chain release factor 2 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfB
PE=3 SV=1
Length = 364
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 4 LPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKN 63
L + +++ DE ++ +D Y+SSG GGQH NK ESAVR+ H PT ++ Q DR QHKN
Sbjct: 225 LDDDIQINIDE--KDLRIDYYRSSGAGGQHVNKTESAVRITHIPTNIVVQCQNDRDQHKN 282
Query: 64 RASAL----SRLRTLLALKVRSSVNLDAYSPPPQLHQI 97
+ASA+ SRL L LK + N S +QI
Sbjct: 283 KASAMKVLKSRLYELEKLKKQEESNKTPKSDIAWGYQI 320
>sp|A6Q718|RF2_SULNB Peptide chain release factor 2 OS=Sulfurovum sp. (strain NBC37-1)
GN=prfB PE=3 SV=1
Length = 364
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 44/59 (74%)
Query: 17 RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
++ +D Y++SG GGQH NK ESA+R+ H PTG++ Q DRSQHKN+++A+ L++ L
Sbjct: 236 KDLRIDTYRASGAGGQHVNKTESAIRITHEPTGIVVQCQNDRSQHKNKSAAMKMLKSRL 294
>sp|Q0SNW8|RF1_BORAP Peptide chain release factor 1 OS=Borrelia afzelii (strain PKo)
GN=prfA PE=3 SV=1
Length = 357
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 3 VLPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHK 62
VLPN E D ++ +D Y+SSG GGQH N +SAVR+ H PTG++ Q +RSQHK
Sbjct: 205 VLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHK 264
Query: 63 NRASALSRLRTLL 75
N+ A+ LR L
Sbjct: 265 NKDQAMKILRARL 277
>sp|Q5NZU2|RF2_AROAE Peptide chain release factor 2 OS=Aromatoleum aromaticum (strain
EbN1) GN=prfB PE=3 SV=1
Length = 367
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+D Y++SG GGQH NK +SAVR+ H PTGV+ Q DRSQHKN+A A+S L+ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHEPTGVVVQCQNDRSQHKNKAEAMSMLKARL 297
>sp|B7J1C9|RF1_BORBZ Peptide chain release factor 1 OS=Borrelia burgdorferi (strain ZS7)
GN=prfA PE=3 SV=1
Length = 357
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 3 VLPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHK 62
VLPN E D ++ +D Y+SSG GGQH N +SAVR+ H PTG++ Q +RSQHK
Sbjct: 205 VLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHK 264
Query: 63 NRASALSRLRTLL 75
N+ A+ LR L
Sbjct: 265 NKDQAMKILRARL 277
>sp|O51214|RF1_BORBU Peptide chain release factor 1 OS=Borrelia burgdorferi (strain ATCC
35210 / B31 / CIP 102532 / DSM 4680) GN=prfA PE=3 SV=1
Length = 357
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 3 VLPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHK 62
VLPN E D ++ +D Y+SSG GGQH N +SAVR+ H PTG++ Q +RSQHK
Sbjct: 205 VLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHK 264
Query: 63 NRASALSRLRTLL 75
N+ A+ LR L
Sbjct: 265 NKDQAMKILRARL 277
>sp|Q662G9|RF1_BORGA Peptide chain release factor 1 OS=Borrelia garinii (strain PBi)
GN=prfA PE=3 SV=1
Length = 357
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 46/73 (63%)
Query: 3 VLPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHK 62
VLPN E D ++ +D Y+SSG GGQH N +SAVR+ H PTG++ Q +RSQHK
Sbjct: 205 VLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHK 264
Query: 63 NRASALSRLRTLL 75
N+ A+ LR L
Sbjct: 265 NKDQAMKILRARL 277
>sp|Q7W8T4|RF2_BORPA Peptide chain release factor 2 OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=prfB PE=3 SV=1
Length = 367
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRT-LLALKV 79
+D Y++SG GGQH NK +SAVR+ HAP+G++ Q DRSQH+NRA A+ L++ L L++
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEM 302
Query: 80 RS 81
R+
Sbjct: 303 RN 304
>sp|Q7VZ35|RF2_BORPE Peptide chain release factor 2 OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=prfB PE=3 SV=1
Length = 367
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRT-LLALKV 79
+D Y++SG GGQH NK +SAVR+ HAP+G++ Q DRSQH+NRA A+ L++ L L++
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEM 302
Query: 80 RS 81
R+
Sbjct: 303 RN 304
>sp|Q7WK44|RF2_BORBR Peptide chain release factor 2 OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=prfB PE=3 SV=1
Length = 367
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRT-LLALKV 79
+D Y++SG GGQH NK +SAVR+ HAP+G++ Q DRSQH+NRA A+ L++ L L++
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEM 302
Query: 80 RS 81
R+
Sbjct: 303 RN 304
>sp|B2U8V1|RF2_RALPJ Peptide chain release factor 2 OS=Ralstonia pickettii (strain 12J)
GN=prfB PE=3 SV=1
Length = 367
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+D Y++SG GGQH NK +SAVR+ H PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 VDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRL 297
>sp|B4EDB1|RF2_BURCJ Peptide chain release factor 2 OS=Burkholderia cepacia (strain
J2315 / LMG 16656) GN=prfB PE=3 SV=1
Length = 367
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+D Y++SG GGQH NK +SAVR+ H PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q63SP0|RF2_BURPS Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
K96243) GN=prfB PE=3 SV=1
Length = 367
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+D Y++SG GGQH NK +SAVR+ H PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|A3NX26|RF2_BURP0 Peptide chain release factor 2 OS=Burkholderia pseudomallei (strain
1106a) GN=prfB PE=3 SV=3
Length = 367
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+D Y++SG GGQH NK +SAVR+ H PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q62J00|RF2_BURMA Peptide chain release factor 2 OS=Burkholderia mallei (strain ATCC
23344) GN=prfB PE=3 SV=1
Length = 367
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 42/55 (76%)
Query: 21 MDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+D Y++SG GGQH NK +SAVR+ H PTG++ Q DRSQH+NRA A++ L++ L
Sbjct: 243 IDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRL 297
>sp|Q82TH4|RF1_NITEU Peptide chain release factor 1 OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=prfA PE=3 SV=1
Length = 359
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 3 VLPNYLELTDDELF-RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQH 61
VLP E+ D L + +D +++SG GGQH NK +SAVR+ H PTG++A+ E RSQH
Sbjct: 205 VLPEADEIADITLNPADLRIDTFRASGAGGQHINKTDSAVRITHLPTGIVAECQEGRSQH 264
Query: 62 KNRASALSRLRTLLALKVRSSVNLDAYSPPPQLHQILPPKSTIRSSEVGPQIGPNNPKFA 121
KN+A A+S +L ++ LD Q Q KS + S E +I N
Sbjct: 265 KNKAQAMS----VLIARI-----LDKQVRAQQAEQAATRKSLVGSGERSERIRTYN---- 311
Query: 122 LVLPYSLLLPFVINAA--KIYGLKSGEIQE 149
P + IN KI + GE+ E
Sbjct: 312 --FPQGRITDHRINLTLYKIEQIIDGELDE 339
>sp|A6W1C2|RF1_MARMS Peptide chain release factor 1 OS=Marinomonas sp. (strain MWYL1)
GN=prfA PE=3 SV=1
Length = 362
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 3 VLPNYLELTDDELFRECEM--DAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQ 60
V+P E+ DD + + ++ D +++SG GGQH NK +SA+RL H PTGV+ + E+RSQ
Sbjct: 207 VMPEMDEV-DDIIINKSDLRIDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQEERSQ 265
Query: 61 HKNRASALSRLRTLL 75
HKNRA A+S L + L
Sbjct: 266 HKNRAKAMSLLASRL 280
>sp|A4VPB9|RF1_PSEU5 Peptide chain release factor 1 OS=Pseudomonas stutzeri (strain
A1501) GN=prfA PE=3 SV=1
Length = 360
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRL 71
E +D Y+SSG GGQH NK +SA+R+ H PTG++ + E+RSQHKNRA A++ L
Sbjct: 223 ELRIDTYRSSGAGGQHVNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWL 276
>sp|Q12F86|RF1_POLSJ Peptide chain release factor 1 OS=Polaromonas sp. (strain JS666 /
ATCC BAA-500) GN=prfA PE=3 SV=1
Length = 373
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLAL 77
+ +D Y++SG GGQH NK +SAVR+ H PTG++A+ +DRSQH+N+A AL L +
Sbjct: 231 DLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIVE 290
Query: 78 KVRS 81
K RS
Sbjct: 291 KDRS 294
>sp|B7J4M2|RF2_ACIF2 Peptide chain release factor 2 OS=Acidithiobacillus ferrooxidans
(strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=prfB PE=3
SV=1
Length = 365
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL-- 75
+ ++D Y++SG GGQH NK +SA+R+ H P+G++ DRSQHKNRA A+ LR+ L
Sbjct: 238 DLKVDTYRASGAGGQHVNKTDSAIRITHVPSGIVVACQTDRSQHKNRAEAMRMLRSKLYE 297
Query: 76 ----ALKVRSSVNLDAYSPPPQLHQI---LPPKSTIRSSEVGPQIGPNNP 118
V D+ S HQI + +S I+ G ++G
Sbjct: 298 MEMQKRAVEKQALEDSKSDIGWGHQIRSYVLDQSRIKDLRTGVEVGDTQK 347
>sp|Q21FM3|RF1_SACD2 Peptide chain release factor 1 OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=prfA PE=3 SV=1
Length = 360
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 3 VLPNYLELTDDELFR-ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQH 61
V+P E+ + + + + +D +++SG GGQH NK +SA+RL H PTGV+ + ++RSQH
Sbjct: 207 VMPEADEMAEVNINKADLRIDTFRASGAGGQHVNKTDSAIRLTHIPTGVVVECQDERSQH 266
Query: 62 KNRASALSRLRTLLAL 77
KNRA A+S L + L++
Sbjct: 267 KNRAKAMSLLASRLSM 282
>sp|A5WFG1|RF1_PSYWF Peptide chain release factor 1 OS=Psychrobacter sp. (strain PRwf-1)
GN=prfA PE=3 SV=1
Length = 364
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRL 71
+ MD ++SSG GGQH N +SAVRL H PTGV+A+ ++RSQHKNRA A+ L
Sbjct: 224 DIRMDTFRSSGAGGQHVNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQML 277
>sp|A4IWC1|RF1_FRATW Peptide chain release factor 1 OS=Francisella tularensis subsp.
tularensis (strain WY96-3418) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+ ++D +++SG GGQH NK +SA+R+ H PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q0BKE8|RF1_FRATO Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+ ++D +++SG GGQH NK +SA+R+ H PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
>sp|Q2A1Q0|RF1_FRATH Peptide chain release factor 1 OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=prfA PE=3 SV=1
Length = 361
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 18 ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
+ ++D +++SG GGQH NK +SA+R+ H PTGV+ + + RSQHKNRA+A+S L++ L
Sbjct: 223 DIKVDTFRASGAGGQHVNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKL 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,076,806
Number of Sequences: 539616
Number of extensions: 1908905
Number of successful extensions: 4713
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3716
Number of HSP's gapped (non-prelim): 960
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)