Query 038082
Match_columns 149
No_of_seqs 214 out of 1103
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zbt_A RF-1, peptide chain rel 100.0 3.2E-37 1.1E-41 266.5 8.3 117 16-141 232-367 (371)
2 2b3t_B RF-1, peptide chain rel 100.0 6.8E-37 2.3E-41 263.7 7.6 119 15-142 218-355 (360)
3 1rq0_A RF-1, peptide chain rel 100.0 6.3E-37 2.2E-41 262.4 7.1 117 16-141 195-330 (342)
4 3d5a_X RF1, peptide chain rele 100.0 3.3E-37 1.1E-41 265.2 3.8 119 14-141 212-349 (354)
5 2ihr_1 Peptide chain release f 100.0 8.9E-33 3.1E-37 238.4 10.2 110 16-137 224-354 (365)
6 1gqe_A Release factor 2, RF2; 100.0 6.9E-33 2.4E-37 239.1 9.0 106 15-132 235-361 (365)
7 2rsm_A Probable peptide chain 100.0 2.4E-31 8E-36 197.6 9.6 74 5-82 38-111 (115)
8 2jva_A Peptidyl-tRNA hydrolase 100.0 2.4E-30 8.2E-35 190.5 9.1 76 1-80 1-100 (108)
9 1j26_A Immature colon carcinom 99.9 4E-28 1.4E-32 179.7 9.1 68 8-79 15-107 (112)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 1.5E-28 5.1E-33 188.1 6.9 77 1-81 1-101 (140)
11 2ctl_A Vigilin; K homology typ 54.7 7.1 0.00024 26.7 2.3 48 27-77 32-87 (97)
12 2cte_A Vigilin; K homology typ 52.7 6.9 0.00024 26.5 1.9 46 28-78 33-85 (94)
13 1vig_A Vigilin; RNA-binding pr 51.7 9.1 0.00031 24.5 2.3 43 27-74 20-69 (71)
14 2ctm_A Vigilin; K homology typ 45.3 19 0.00064 24.5 3.2 49 28-79 33-87 (95)
15 1zs4_A Regulatory protein CII; 45.2 5.7 0.0002 27.3 0.5 25 125-149 16-43 (83)
16 2ctk_A Vigilin; K homology typ 43.3 23 0.00077 24.5 3.5 48 28-80 33-87 (104)
17 1we8_A Tudor and KH domain con 41.3 13 0.00044 25.5 1.9 45 28-77 31-86 (104)
18 2jn6_A Protein CGL2762, transp 40.4 12 0.00042 24.5 1.6 36 114-149 4-42 (97)
19 3e7l_A Transcriptional regulat 40.1 7.7 0.00026 24.1 0.5 17 133-149 35-51 (63)
20 2axy_A Poly(RC)-binding protei 40.0 14 0.00049 23.6 1.9 46 28-76 21-71 (73)
21 2ovg_A Phage lambda CRO; trans 39.1 8.2 0.00028 24.8 0.6 26 124-149 7-32 (66)
22 2hin_A GP39, repressor protein 38.6 8.6 0.00029 25.2 0.6 24 125-148 4-28 (71)
23 1xn7_A Hypothetical protein YH 37.5 9.3 0.00032 25.4 0.6 25 123-147 3-33 (78)
24 1umq_A Photosynthetic apparatu 37.4 21 0.00073 23.8 2.5 17 133-149 57-73 (81)
25 2ctj_A Vigilin; K homology typ 37.1 16 0.00055 25.0 1.8 45 27-76 32-84 (95)
26 2rn7_A IS629 ORFA; helix, all 36.1 16 0.00055 24.4 1.7 35 114-148 5-48 (108)
27 1g2h_A Transcriptional regulat 36.0 8.6 0.00029 23.9 0.3 17 133-149 36-52 (61)
28 2ctf_A Vigilin; K homology typ 35.8 36 0.0012 23.4 3.5 46 28-77 43-92 (102)
29 2ftc_B Mitochondrial ribosomal 34.2 29 0.001 25.6 3.0 27 22-49 80-106 (136)
30 2k02_A Ferrous iron transport 33.9 10 0.00036 25.9 0.4 26 123-148 3-34 (87)
31 2yqr_A KIAA0907 protein; struc 33.9 22 0.00076 25.5 2.2 47 27-77 34-99 (119)
32 2elh_A CG11849-PA, LD40883P; s 31.4 19 0.00063 23.5 1.3 36 114-149 21-57 (87)
33 2lfh_A DNA-binding protein inh 30.4 16 0.00056 24.2 0.9 24 52-75 17-40 (68)
34 1tc3_C Protein (TC3 transposas 29.7 24 0.00082 19.1 1.5 21 128-148 19-39 (51)
35 1rzs_A Antirepressor, regulato 29.6 15 0.0005 22.6 0.6 17 133-149 13-29 (61)
36 2cw1_A SN4M; lambda CRO fold, 29.2 14 0.00048 23.7 0.4 26 124-149 7-32 (65)
37 2glo_A Brinker CG9653-PA; prot 28.4 25 0.00087 21.1 1.5 35 114-148 4-43 (59)
38 2pij_A Prophage PFL 6 CRO; tra 27.6 13 0.00043 22.5 -0.0 17 133-149 16-32 (67)
39 1k1g_A SF1-BO isoform; splicin 27.5 31 0.0011 24.9 2.1 65 4-75 7-97 (131)
40 2hh3_A KH-type splicing regula 26.2 45 0.0015 23.1 2.7 46 28-76 27-79 (106)
41 1jko_C HIN recombinase, DNA-in 25.2 25 0.00084 19.5 1.0 19 130-148 21-39 (52)
42 1dtj_A RNA-binding neurooncolo 24.9 25 0.00087 22.2 1.1 45 28-75 19-73 (76)
43 1xwr_A Regulatory protein CII; 24.6 29 0.00098 24.1 1.4 26 124-149 14-42 (97)
44 1uw4_A UPF3X; nonsense mediate 24.1 32 0.0011 23.5 1.5 13 39-51 2-14 (91)
45 1ec6_A RNA-binding protein NOV 23.6 63 0.0022 21.0 2.9 49 28-79 19-77 (87)
46 2p2r_A Poly(RC)-binding protei 21.7 35 0.0012 21.6 1.3 44 28-76 21-73 (76)
47 4aya_A DNA-binding protein inh 21.3 32 0.0011 24.2 1.0 23 53-75 29-51 (97)
48 2jvz_A KH type-splicing, FAR u 21.2 38 0.0013 24.1 1.5 47 28-77 107-160 (164)
49 1jhg_A Trp operon repressor; c 20.4 18 0.00063 25.4 -0.4 19 131-149 59-77 (101)
50 2x48_A CAG38821; archeal virus 20.2 22 0.00074 20.7 -0.0 19 130-148 31-49 (55)
51 3krm_A Insulin-like growth fac 20.2 37 0.0013 24.3 1.3 47 28-77 101-156 (163)
No 1
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=3.2e-37 Score=266.53 Aligned_cols=117 Identities=26% Similarity=0.336 Sum_probs=92.7
Q ss_pred hccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccc
Q 038082 16 FRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPQLH 95 (149)
Q Consensus 16 ~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 95 (149)
++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.....++...+
T Consensus 232 ~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~--------- 302 (371)
T 1zbt_A 232 PKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDE--------- 302 (371)
T ss_dssp GGGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred cCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 56669999999999999999999999999999999999999999999999999999998876555553331
Q ss_pred ccCCCCCccccCCCCCCCCCCC------------------hhhhhh-HHHhhchhhHHHHHHHhC
Q 038082 96 QILPPKSTIRSSEVGPQIGPNN------------------PKFALV-LPYSLLLPFVINAAKIYG 141 (149)
Q Consensus 96 ~~~~rksqir~~~r~~kIrtyn------------------~~f~~g-L~~llD~L~~~~aA~~L~ 141 (149)
....|++++++|+||++||||| ..||+| |++++|++...++|+.|.
T Consensus 303 ~~~~r~~~ig~g~Rse~IRtYnf~q~rVtDhRtg~~~~~l~~VldGdLd~~I~a~l~~~~~~~l~ 367 (371)
T 1zbt_A 303 QDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLE 367 (371)
T ss_dssp TCC----CCSCSCTTSEEEEEETTTTEEEETTTTEEESCHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCeeeEECCCCEeeecccCCeECChHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 2346789999999999999999 499999 999999999999999885
No 2
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=6.8e-37 Score=263.68 Aligned_cols=119 Identities=26% Similarity=0.343 Sum_probs=97.0
Q ss_pred hhccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCccc
Q 038082 15 LFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPQL 94 (149)
Q Consensus 15 l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~ 94 (149)
.++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.....++.+.+
T Consensus 218 ~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~-------- 289 (360)
T 2b3t_B 218 NPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQA-------- 289 (360)
T ss_dssp CSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC----------
T ss_pred ChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 366779999999999999999999999999999999999999999999999999999999976655554331
Q ss_pred cccCCCCCccccCCCCCCCCCCC------------------hhhhhh-HHHhhchhhHHHHHHHhCC
Q 038082 95 HQILPPKSTIRSSEVGPQIGPNN------------------PKFALV-LPYSLLLPFVINAAKIYGL 142 (149)
Q Consensus 95 ~~~~~rksqir~~~r~~kIrtyn------------------~~f~~g-L~~llD~L~~~~aA~~L~~ 142 (149)
....|++++++|+||++||||| ..||+| |+++||++...++|+.|..
T Consensus 290 -~~~~r~~~i~~g~rse~IRtYnf~~~rVtDhRt~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~~ 355 (360)
T 2b3t_B 290 -EASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAA 355 (360)
T ss_dssp -----CCC-------CCEEEEEETTTTEEEEGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHCC-
T ss_pred -HHHHHHHhcccccccCCeeeEECCCCeeeecccCcEECCHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence 2346799999999999999999 489999 9999999999999999964
No 3
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=6.3e-37 Score=262.36 Aligned_cols=117 Identities=27% Similarity=0.327 Sum_probs=91.4
Q ss_pred hccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccc
Q 038082 16 FRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPQLH 95 (149)
Q Consensus 16 ~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 95 (149)
++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.....++...+
T Consensus 195 ~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~--------- 265 (342)
T 1rq0_A 195 PEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKERE--------- 265 (342)
T ss_dssp GGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTT---------
T ss_pred hhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 55669999999999999999999999999999999999999999999999999999999876665554432
Q ss_pred ccCCCCCccccCCCCCCCCCCC------------------hhhhhh-HHHhhchhhHHHHHHHhC
Q 038082 96 QILPPKSTIRSSEVGPQIGPNN------------------PKFALV-LPYSLLLPFVINAAKIYG 141 (149)
Q Consensus 96 ~~~~rksqir~~~r~~kIrtyn------------------~~f~~g-L~~llD~L~~~~aA~~L~ 141 (149)
....|++++++|+||++||||| ..||+| |+++||++...++|+.|.
T Consensus 266 ~~~~r~~~i~~g~Rse~IRtYnf~~~rVtDhRt~~~~~~l~~vldGdLd~~I~a~l~~~~~~~l~ 330 (342)
T 1rq0_A 266 ISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQEILDGDLDEIISKLIEHDIENNLE 330 (342)
T ss_dssp TCC----------CCCEEEEEETTTTEEEETTTTEEESCHHHHHTTCCHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHhhcccccccCCeEEEECCCCeeeecccCceeCCHHHHhCCcHHHHHHHHHHHHHHHHHH
Confidence 2346789999999999999999 499999 999999999888888774
No 4
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=3.3e-37 Score=265.17 Aligned_cols=119 Identities=29% Similarity=0.301 Sum_probs=104.9
Q ss_pred hhhccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 038082 14 ELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPQ 93 (149)
Q Consensus 14 ~l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~~~ 93 (149)
..++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.....++...+
T Consensus 212 i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~------- 284 (354)
T 3d5a_X 212 LNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAER------- 284 (354)
T ss_dssp CCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred cCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3355669999999999999999999999999999999999999999999999999999998876555543321
Q ss_pred ccccCCCCCccccCCCCCCCCCCC------------------hhhhhh-HHHhhchhhHHHHHHHhC
Q 038082 94 LHQILPPKSTIRSSEVGPQIGPNN------------------PKFALV-LPYSLLLPFVINAAKIYG 141 (149)
Q Consensus 94 ~~~~~~rksqir~~~r~~kIrtyn------------------~~f~~g-L~~llD~L~~~~aA~~L~ 141 (149)
....|++++++|+||++||||| ..||+| |++++|++...++|+.|.
T Consensus 285 --~~~~r~~~i~~g~rse~IRtYnf~q~rVtDhR~~~~~~~l~~vldG~Ld~~I~a~l~~~~~~~l~ 349 (354)
T 3d5a_X 285 --LRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRIGFTTHDLEGVLSGHLTPILEALKRADQERQLA 349 (354)
T ss_dssp --HHHHHHHHSCGGGGSCSSEEEETTTTEEEETTTTEEECCHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhcccccccCCeeeEECCCCeeeecccCceeCChHHhhCCchHHHHHHHHHHHHHHHHH
Confidence 2345789999999999999999 499999 999999999999999885
No 5
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.98 E-value=8.9e-33 Score=238.41 Aligned_cols=110 Identities=29% Similarity=0.269 Sum_probs=91.9
Q ss_pred hccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccc
Q 038082 16 FRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPQLH 95 (149)
Q Consensus 16 ~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~ 95 (149)
++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.....++.+.+.
T Consensus 224 ~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~-------- 295 (365)
T 2ihr_1 224 PEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEEL-------- 295 (365)
T ss_dssp GGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred ccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 556699999999999999999999999999999999999999999999999999999988765555544322
Q ss_pred ccCCC--CCccccCCCCCCCCCCCh------------------hhhhh-HHHhhchhhHHHHH
Q 038082 96 QILPP--KSTIRSSEVGPQIGPNNP------------------KFALV-LPYSLLLPFVINAA 137 (149)
Q Consensus 96 ~~~~r--ksqir~~~r~~kIrtyn~------------------~f~~g-L~~llD~L~~~~aA 137 (149)
...| ++++++|+ +|||||| .||+| |+++||++..+...
T Consensus 296 -~~~r~~~~~i~~G~---~IRtYnf~~~rVtDhRtg~~~~~l~~VldGdld~~I~a~l~~~~~ 354 (365)
T 2ihr_1 296 -KALRGEVRPIEWGS---QIRSYVLDKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAG 354 (365)
T ss_dssp -TTTTCCSCCSCCCS---CSEEEEGGGTEEEETTTCCEESCHHHHTTTCCHHHHHHHHHHHHT
T ss_pred -HHHHhhhhccCccC---CeeeEECCCccchhcccCceeCChHHHhCCcHHHHHHHHHHHHhc
Confidence 2234 56666655 7999994 89999 99999999866543
No 6
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=99.98 E-value=6.9e-33 Score=239.15 Aligned_cols=106 Identities=33% Similarity=0.428 Sum_probs=88.1
Q ss_pred hhccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCccc
Q 038082 15 LFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSSVNLDAYSPPPQL 94 (149)
Q Consensus 15 l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~ 94 (149)
.++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|+++|.....++...+.
T Consensus 235 ~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~------- 307 (365)
T 1gqe_A 235 NPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEK------- 307 (365)
T ss_dssp CGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred CHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3556699999999999999999999999999999999999999999999999999999988765555544322
Q ss_pred cccCCCC--CccccCCCCCCCCCCC------------------hhhhhh-HHHhhchhh
Q 038082 95 HQILPPK--STIRSSEVGPQIGPNN------------------PKFALV-LPYSLLLPF 132 (149)
Q Consensus 95 ~~~~~rk--sqir~~~r~~kIrtyn------------------~~f~~g-L~~llD~L~ 132 (149)
...|+ .+++ ||++||||| ..||+| |+++||++.
T Consensus 308 --~~~r~~~~~i~---~G~~IRtY~f~~~rVkDhRt~~~~~~l~~vldGdld~~I~a~l 361 (365)
T 1gqe_A 308 --QAMEDNKSDIG---WGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASL 361 (365)
T ss_dssp --TCCSTTCCCCC---SCSEEEEEEGGGTEEEETTTCCEESCHHHHHTTCCHHHHHHHH
T ss_pred --HHHhhhhcccC---ccCCeEeEECCCCeeeccccCceECCHHHHhCCCHHHHHHHHH
Confidence 22344 4444 455999999 489999 999999876
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.97 E-value=2.4e-31 Score=197.58 Aligned_cols=74 Identities=36% Similarity=0.553 Sum_probs=66.8
Q ss_pred CCCCCCChhhhhccceEEEEeccCCCcCCCCccCceEEEEEcCCceEEEeccccCHHHHHHHHHHHHHHHHHHHHHhh
Q 038082 5 PNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLLALKVRSS 82 (149)
Q Consensus 5 ~~~~~i~~~~l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h~ptGi~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~~~ 82 (149)
|..+.|++++| +|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.||++|+++|.+.+..+
T Consensus 38 ~~~l~I~~~dl----~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 38 PALLPLNESEL----EEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp CCSCCCCGGGC----EEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CccCCcCHHHe----EEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34466776666 999999999999999999999999999999999999999999999999999999998776544
No 8
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.96 E-value=2.4e-30 Score=190.54 Aligned_cols=76 Identities=39% Similarity=0.623 Sum_probs=71.6
Q ss_pred CccCCCCCCCChhhhhccceEEEEeccCCCcCCCCccCceEEEEE------cC-----------------Cc-eEEEecc
Q 038082 1 MNVLPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKH------AP-----------------TG-VIAQAAE 56 (149)
Q Consensus 1 ~~~~~~~~~i~~~~l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~h------~p-----------------tG-i~v~~~~ 56 (149)
|+.|++.+.||+++| +|+|+|||||||||||||+|+|+|+| +| +| |+|+|++
T Consensus 1 ml~i~~~i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~ 76 (108)
T 2jva_A 1 MLVISNNVHLPDAEI----ELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQ 76 (108)
T ss_dssp CEECSSSCEECGGGE----EEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECC
T ss_pred CcccccccccChHHE----EEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECC
Confidence 788899999998888 99999999999999999999999999 99 89 9999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHH
Q 038082 57 DRSQHKNRASALSRLRTLLALKVR 80 (149)
Q Consensus 57 ~RSq~~Nr~~A~~~L~~~l~~~~~ 80 (149)
+|||.+||+.|+++|+++|.....
T Consensus 77 ~RSQ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 77 YRTQEQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999987654
No 9
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.95 E-value=4e-28 Score=179.69 Aligned_cols=68 Identities=29% Similarity=0.473 Sum_probs=62.0
Q ss_pred CCCChhhhhccceEEEEeccCCCcCCCCccCceEEEE-EcCCc------------------------eEEEeccccCHHH
Q 038082 8 LELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLK-HAPTG------------------------VIAQAAEDRSQHK 62 (149)
Q Consensus 8 ~~i~~~~l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~-h~ptG------------------------i~v~~~~~RSq~~ 62 (149)
+.||+++| +|+|+|||||||||||||+|+|+|+ |+|+| |+|+|+++|||++
T Consensus 15 i~I~~~dl----~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 15 SYIPLDRL----SISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CCCCTTTS----EEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred EecChHHe----EEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 44665555 9999999999999999999999998 99987 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038082 63 NRASALSRLRTLLALKV 79 (149)
Q Consensus 63 Nr~~A~~~L~~~l~~~~ 79 (149)
||+.|+++|+++|....
T Consensus 91 Nr~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 91 NLAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999997764
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.95 E-value=1.5e-28 Score=188.10 Aligned_cols=77 Identities=38% Similarity=0.600 Sum_probs=71.3
Q ss_pred CccCCCCCCCChhhhhccceEEEEeccCCCcCCCCccCceEEEE------EcCC-----------------c-eEEEecc
Q 038082 1 MNVLPNYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLK------HAPT-----------------G-VIAQAAE 56 (149)
Q Consensus 1 ~~~~~~~~~i~~~~l~~d~~i~~~RssGpGGQ~vNk~~s~V~l~------h~pt-----------------G-i~v~~~~ 56 (149)
|+.|++.+.||+++| +|+|+|||||||||||||+|+|+|+ |+|+ | |+|+|++
T Consensus 1 m~~i~~~i~I~~~el----~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~ 76 (140)
T 4dh9_Y 1 MIVISRHVAIPDGEL----EITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQE 76 (140)
T ss_dssp -CCCCSSSCCCTTCS----EEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECC
T ss_pred CccccCCCccChHHe----EEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcC
Confidence 889999999998888 9999999999999999999999999 6997 5 9999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHh
Q 038082 57 DRSQHKNRASALSRLRTLLALKVRS 81 (149)
Q Consensus 57 ~RSq~~Nr~~A~~~L~~~l~~~~~~ 81 (149)
+|||++||+.|+++|.++|......
T Consensus 77 ~RSQ~~Nr~~A~~rL~~~l~~a~~~ 101 (140)
T 4dh9_Y 77 YRSQELNREAALARLVAMIKELTTE 101 (140)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999877753
No 11
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=54.69 E-value=7.1 Score=26.73 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=32.4
Q ss_pred cCCCcCCCCc--cCceEEEEEcCCc------eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 038082 27 SGPGGQHRNK--RESAVRLKHAPTG------VIAQAAEDRSQHKNRASALSRLRTLLAL 77 (149)
Q Consensus 27 sGpGGQ~vNk--~~s~V~l~h~ptG------i~v~~~~~RSq~~Nr~~A~~~L~~~l~~ 77 (149)
=||||-++|+ .+|.|+|..-+.| -.|...-. ..|-+.|..++..++..
T Consensus 32 IGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 32 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGE 87 (97)
T ss_dssp SCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHH
Confidence 3999999995 4678888776655 12333332 34778888888887654
No 12
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=52.70 E-value=6.9 Score=26.48 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=30.7
Q ss_pred CCCcCCCCc--cCceEEEEEcC----Cc-eEEEeccccCHHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAP----TG-VIAQAAEDRSQHKNRASALSRLRTLLALK 78 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~p----tG-i~v~~~~~RSq~~Nr~~A~~~L~~~l~~~ 78 (149)
||||.++++ -+|.|+|..-+ +| +.|... ..+-+.|..++..++...
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-----~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-----KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-----HHHHHHHHHHHHHHhhcc
Confidence 999999995 35666665533 46 444432 467778888888776543
No 13
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=51.73 E-value=9.1 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=29.4
Q ss_pred cCCCcCCCCc--cCceEEEEEcCCc----e-EEEeccccCHHHHHHHHHHHHHHH
Q 038082 27 SGPGGQHRNK--RESAVRLKHAPTG----V-IAQAAEDRSQHKNRASALSRLRTL 74 (149)
Q Consensus 27 sGpGGQ~vNk--~~s~V~l~h~ptG----i-~v~~~~~RSq~~Nr~~A~~~L~~~ 74 (149)
=||||.++|+ -+|.|+|..-++| . .|... . .+-+.|.+.+..+
T Consensus 20 IG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~---~--~~v~~A~~~I~~i 69 (71)
T 1vig_A 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD---P--QGVQQAKRELLEL 69 (71)
T ss_dssp TCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES---S--HHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC---H--HHHHHHHHHHHHH
Confidence 3999999995 5788998877777 3 33332 1 4567777766553
No 14
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=45.28 E-value=19 Score=24.47 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=31.0
Q ss_pred CCCcCCCCc--cCceEEEEEcCCce----EEEeccccCHHHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPTGV----IAQAAEDRSQHKNRASALSRLRTLLALKV 79 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~ptGi----~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~ 79 (149)
||||.++++ -+|.|+|..-+.|= .|+..-. ..|-+.|.+.+..++....
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHHHH
Confidence 888888884 45677776655551 2222222 2678889888888765444
No 15
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=45.21 E-value=5.7 Score=27.29 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=20.5
Q ss_pred HHhhchhh---HHHHHHHhCCCcccccC
Q 038082 125 PYSLLLPF---VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 125 ~~llD~L~---~~~aA~~L~~s~~~l~~ 149 (149)
..+|..|. ....|+.+|++.|++||
T Consensus 16 s~iL~~La~~gQ~~vAe~~GvdeStISR 43 (83)
T 1zs4_A 16 SALLNKIAMLGTEKTAEAVGVDKSQISR 43 (83)
T ss_dssp HHHHHHHHHHCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhCCCHHHHhh
Confidence 44555555 89999999999999987
No 16
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.31 E-value=23 Score=24.46 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=33.9
Q ss_pred CCCcCCCCc--cCceEEEEEcCCc-----eEEEeccccCHHHHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPTG-----VIAQAAEDRSQHKNRASALSRLRTLLALKVR 80 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~ptG-----i~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~~ 80 (149)
||||-++++ -+|.|.|..-+.| +.|... . .|-+.|...+..++.....
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHHhhHHH
Confidence 999999995 5678887766555 444432 2 6788899888888765443
No 17
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=41.26 E-value=13 Score=25.52 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=29.3
Q ss_pred CCCcCCCCc--cCceEEEEEcC--------Cc-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAP--------TG-VIAQAAEDRSQHKNRASALSRLRTLLAL 77 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~p--------tG-i~v~~~~~RSq~~Nr~~A~~~L~~~l~~ 77 (149)
|+||.++++ -+|.|+|.--+ ++ +.|....+ +-+.|.+.+.+++..
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSE 86 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhh
Confidence 889998884 45556655432 45 55555433 468898888888753
No 18
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=40.43 E-value=12 Score=24.55 Aligned_cols=36 Identities=8% Similarity=-0.005 Sum_probs=27.0
Q ss_pred CCCChhhhhh-HHHhhc--hhhHHHHHHHhCCCcccccC
Q 038082 114 GPNNPKFALV-LPYSLL--LPFVINAAKIYGLKSGEIQE 149 (149)
Q Consensus 114 rtyn~~f~~g-L~~llD--~L~~~~aA~~L~~s~~~l~~ 149 (149)
+.|.++|-.- +..+++ ..-+..+|+.+|+|.+.|+|
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~r 42 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKN 42 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHH
Confidence 3588888766 666654 45689999999999988753
No 19
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.09 E-value=7.7 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCcccccC
Q 038082 133 VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 133 ~~~aA~~L~~s~~~l~~ 149 (149)
...+|+.||.|.+.|.|
T Consensus 35 ~~~aA~~LGisr~tL~r 51 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 78999999999988753
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=39.96 E-value=14 Score=23.60 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCCcCCCCc--cCceEEEEEcCCce---EEEeccccCHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPTGV---IAQAAEDRSQHKNRASALSRLRTLLA 76 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~ptGi---~v~~~~~RSq~~Nr~~A~~~L~~~l~ 76 (149)
|+||.++++ .+|.++|.-.+.|- +|+.... ..+-..|...+..+|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLE 71 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 899999985 46778877666651 2333332 3566778777766653
No 21
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=39.13 E-value=8.2 Score=24.80 Aligned_cols=26 Identities=19% Similarity=0.052 Sum_probs=20.0
Q ss_pred HHHhhchhhHHHHHHHhCCCcccccC
Q 038082 124 LPYSLLLPFVINAAKIYGLKSGEIQE 149 (149)
Q Consensus 124 L~~llD~L~~~~aA~~L~~s~~~l~~ 149 (149)
|.++++..-...+|+.|+.|.+++|+
T Consensus 7 L~~~~~~~s~t~aA~~L~vtQ~AVS~ 32 (66)
T 2ovg_A 7 LKDYAMRFGQTKTAKDLGVYPSSINQ 32 (66)
T ss_dssp HHHHHHHHCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHCCHHHHHHHhCCCHHHHHH
Confidence 44445555688999999999999873
No 22
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=38.63 E-value=8.6 Score=25.23 Aligned_cols=24 Identities=21% Similarity=-0.007 Sum_probs=18.5
Q ss_pred HHhhchhh-HHHHHHHhCCCccccc
Q 038082 125 PYSLLLPF-VINAAKIYGLKSGEIQ 148 (149)
Q Consensus 125 ~~llD~L~-~~~aA~~L~~s~~~l~ 148 (149)
+++++..- .+..|+.||.|.+++|
T Consensus 4 ~~ai~~~G~~~~lA~~lGVs~~aVs 28 (71)
T 2hin_A 4 EELVRHFGDVEKAAVGVGVTPGAVY 28 (71)
T ss_dssp HHHHHHHSSHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHCCHHHHHHHHCCCHHHHH
Confidence 44555553 8999999999999876
No 23
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=37.55 E-value=9.3 Score=25.37 Aligned_cols=25 Identities=12% Similarity=-0.114 Sum_probs=20.5
Q ss_pred hHHHhhchhh------HHHHHHHhCCCcccc
Q 038082 123 VLPYSLLLPF------VINAAKIYGLKSGEI 147 (149)
Q Consensus 123 gL~~llD~L~------~~~aA~~L~~s~~~l 147 (149)
-|+.++|.|- +++.|+.|+.|...+
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TI 33 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMI 33 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHH
Confidence 3677788775 999999999998765
No 24
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=37.41 E-value=21 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCcccccC
Q 038082 133 VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 133 ~~~aA~~L~~s~~~l~~ 149 (149)
+..+|+.||+|.+.|+|
T Consensus 57 ~s~AA~~LGISR~TLyr 73 (81)
T 1umq_A 57 VSETARRLNMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 88999999999998864
No 25
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=37.06 E-value=16 Score=24.97 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=29.6
Q ss_pred cCCCcCCCCc--cCc-eEEEEEcCCc-----eEEEeccccCHHHHHHHHHHHHHHHHH
Q 038082 27 SGPGGQHRNK--RES-AVRLKHAPTG-----VIAQAAEDRSQHKNRASALSRLRTLLA 76 (149)
Q Consensus 27 sGpGGQ~vNk--~~s-~V~l~h~ptG-----i~v~~~~~RSq~~Nr~~A~~~L~~~l~ 76 (149)
=||||..+++ -++ .|.|..-.+| +.|.... .+-+.|.+++..++.
T Consensus 32 IG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-----~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 32 IGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-----SDVEKAKKQLLHLAE 84 (95)
T ss_dssp HCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-----HHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-----HHHHHHHHHHHHHHh
Confidence 4999999996 345 6777665566 3333322 266788887777764
No 26
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=36.13 E-value=16 Score=24.39 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=26.5
Q ss_pred CCCChhhhhh-HHHhhch--------hhHHHHHHHhCCCccccc
Q 038082 114 GPNNPKFALV-LPYSLLL--------PFVINAAKIYGLKSGEIQ 148 (149)
Q Consensus 114 rtyn~~f~~g-L~~llD~--------L~~~~aA~~L~~s~~~l~ 148 (149)
+.|.++|-.- +..+++. .-+...|..||+|+++|.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~ 48 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLR 48 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHH
Confidence 3488888766 6666654 458899999999988775
No 27
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=35.99 E-value=8.6 Score=23.89 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCcccccC
Q 038082 133 VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 133 ~~~aA~~L~~s~~~l~~ 149 (149)
...+|+.||+|.+.|.|
T Consensus 36 ~~~aA~~LGIsr~tL~r 52 (61)
T 1g2h_A 36 TRKLAQRLGVSHTAIAN 52 (61)
T ss_dssp HHHHHHHTTSCTHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 78999999999998853
No 28
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=35.82 E-value=36 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCCcCCCCccC---ceEEEEEcCCc-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNKRE---SAVRLKHAPTG-VIAQAAEDRSQHKNRASALSRLRTLLAL 77 (149)
Q Consensus 28 GpGGQ~vNk~~---s~V~l~h~ptG-i~v~~~~~RSq~~Nr~~A~~~L~~~l~~ 77 (149)
|+||+++++.. ++|+|. +|.+ =.|+..-. ...-+.|...|..++..
T Consensus 43 G~~G~~Ik~i~~~~~~v~I~-fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHIE-FTEGEDKITLEGP---TEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEEE-ECSSSCEEEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEEE-eCCCCCEEEEECC---HHHHHHHHHHHHHHHHH
Confidence 89999999632 468774 6632 23444333 45677788888777644
No 29
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=34.18 E-value=29 Score=25.65 Aligned_cols=27 Identities=15% Similarity=0.259 Sum_probs=21.6
Q ss_pred EEEeccCCCcCCCCccCceEEEEEcCCc
Q 038082 22 DAYKSSGPGGQHRNKRESAVRLKHAPTG 49 (149)
Q Consensus 22 ~~~RssGpGGQ~vNk~~s~V~l~h~ptG 49 (149)
++.||+|--.|-+.|....+.|+ +|+|
T Consensus 80 ~laRsAGt~a~ii~ke~~~~~vr-LPSG 106 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQ-LPSK 106 (136)
T ss_pred EEEEeCCCeEEEEEecCCEEEEE-CCCC
Confidence 47999999999999966666555 8888
No 30
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.92 E-value=10 Score=25.87 Aligned_cols=26 Identities=8% Similarity=-0.221 Sum_probs=20.7
Q ss_pred hHHHhhchhh------HHHHHHHhCCCccccc
Q 038082 123 VLPYSLLLPF------VINAAKIYGLKSGEIQ 148 (149)
Q Consensus 123 gL~~llD~L~------~~~aA~~L~~s~~~l~ 148 (149)
-|+.++|.|. +++.|+.|+.|++.+-
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIR 34 (87)
T 2k02_A 3 SLMEVRDMLALQGRMEAKQLSARLQTPQPLID 34 (87)
T ss_dssp CTHHHHHHHHHSCSEEHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHH
Confidence 3667777775 9999999999987653
No 31
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.89 E-value=22 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=28.8
Q ss_pred cCCCcCCCCc----cCceEEEEEc--------------CCc-eEEEeccccCHHHHHHHHHHHHHHHHHH
Q 038082 27 SGPGGQHRNK----RESAVRLKHA--------------PTG-VIAQAAEDRSQHKNRASALSRLRTLLAL 77 (149)
Q Consensus 27 sGpGGQ~vNk----~~s~V~l~h~--------------ptG-i~v~~~~~RSq~~Nr~~A~~~L~~~l~~ 77 (149)
=||||.++++ |..+|.|.=. .+| +.|.+.+. .+-+.|.+++..++..
T Consensus 34 IGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~----e~i~~A~~~Ie~Ll~~ 99 (119)
T 2yqr_A 34 EGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKP----EGLAAAKKLCENLLQT 99 (119)
T ss_dssp SCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSH----HHHHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCH----HHHHHHHHHHHHHhhc
Confidence 4888888864 5555555411 235 66666553 4567788877777653
No 32
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=31.39 E-value=19 Score=23.54 Aligned_cols=36 Identities=8% Similarity=-0.003 Sum_probs=24.3
Q ss_pred CCCChhhhhh-HHHhhchhhHHHHHHHhCCCcccccC
Q 038082 114 GPNNPKFALV-LPYSLLLPFVINAAKIYGLKSGEIQE 149 (149)
Q Consensus 114 rtyn~~f~~g-L~~llD~L~~~~aA~~L~~s~~~l~~ 149 (149)
+.|.++|-.- +..+..-.-+.++|+.||+|.+.|.|
T Consensus 21 ~~ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~r 57 (87)
T 2elh_A 21 RSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG 57 (87)
T ss_dssp SSCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHH
Confidence 3577877544 44332333488999999999887753
No 33
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.40 E-value=16 Score=24.17 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEeccccCHHHHHHHHHHHHHHHH
Q 038082 52 AQAAEDRSQHKNRASALSRLRTLL 75 (149)
Q Consensus 52 v~~~~~RSq~~Nr~~A~~~L~~~l 75 (149)
--++.||....+-..|+..|+..|
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~V 40 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELV 40 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHC
Confidence 346889999999999999998875
No 34
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.68 E-value=24 Score=19.08 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=16.2
Q ss_pred hchhhHHHHHHHhCCCccccc
Q 038082 128 LLLPFVINAAKIYGLKSGEIQ 148 (149)
Q Consensus 128 lD~L~~~~aA~~L~~s~~~l~ 148 (149)
.+-+-..++|+.|++|.+.+.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~ 39 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIR 39 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 344458999999999987764
No 35
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.60 E-value=15 Score=22.61 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCcccccC
Q 038082 133 VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 133 ~~~aA~~L~~s~~~l~~ 149 (149)
....|+.||.|.+++|+
T Consensus 13 q~~lA~~lGvs~~~Vs~ 29 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQ 29 (61)
T ss_dssp HHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH
Confidence 78899999999988763
No 36
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=29.16 E-value=14 Score=23.71 Aligned_cols=26 Identities=27% Similarity=0.095 Sum_probs=19.2
Q ss_pred HHHhhchhhHHHHHHHhCCCcccccC
Q 038082 124 LPYSLLLPFVINAAKIYGLKSGEIQE 149 (149)
Q Consensus 124 L~~llD~L~~~~aA~~L~~s~~~l~~ 149 (149)
|..+++..-...+|+.||.|.+++|+
T Consensus 7 Lk~l~~~~sq~~~A~~Lgvsq~aVS~ 32 (65)
T 2cw1_A 7 LKKFVEDKNQEYAARALGLSQKLIEE 32 (65)
T ss_dssp HHHHHTTSCHHHHHHHSSSCHHHHHH
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHH
Confidence 33444444589999999999998873
No 37
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=28.39 E-value=25 Score=21.10 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=23.2
Q ss_pred CCCChhhhhhHHHhhc-hhh----HHHHHHHhCCCccccc
Q 038082 114 GPNNPKFALVLPYSLL-LPF----VINAAKIYGLKSGEIQ 148 (149)
Q Consensus 114 rtyn~~f~~gL~~llD-~L~----~~~aA~~L~~s~~~l~ 148 (149)
+.|.++|-.-+.++++ ..- +...|..||++++.|.
T Consensus 4 ~~ys~efK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~ 43 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQ 43 (59)
T ss_dssp CCCCHHHHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHH
T ss_pred CcCCHHHHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHH
Confidence 3577777554433332 223 7899999999988775
No 38
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.64 E-value=13 Score=22.46 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.7
Q ss_pred HHHHHHHhCCCcccccC
Q 038082 133 VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 133 ~~~aA~~L~~s~~~l~~ 149 (149)
...+|+.||+|.+++|+
T Consensus 16 ~~~~A~~lgis~~~vs~ 32 (67)
T 2pij_A 16 QSALAAALGVNQSAISQ 32 (67)
T ss_dssp HHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 67899999999998864
No 39
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.54 E-value=31 Score=24.94 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=35.4
Q ss_pred CCCCCCCChhhhhccceEEEE-eccCCCcCCCCc----cCceEEEEEc--------------------CCc-eEEEeccc
Q 038082 4 LPNYLELTDDELFRECEMDAY-KSSGPGGQHRNK----RESAVRLKHA--------------------PTG-VIAQAAED 57 (149)
Q Consensus 4 ~~~~~~i~~~~l~~d~~i~~~-RssGpGGQ~vNk----~~s~V~l~h~--------------------ptG-i~v~~~~~ 57 (149)
+...+.||.+..+. +.|+ +==||||..++. |..+|.|.-. .+| +.|++..
T Consensus 7 ~~~kv~IP~~~~P~---~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~- 82 (131)
T 1k1g_A 7 VSDKVMIPQDEYPE---INFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANT- 82 (131)
T ss_dssp EEEEEECCTTTCCS---HHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESS-
T ss_pred EEEEEEECCccccC---cceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECC-
Confidence 34455666654431 1111 345888877774 4555555431 145 6667654
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 038082 58 RSQHKNRASALSRLRTLL 75 (149)
Q Consensus 58 RSq~~Nr~~A~~~L~~~l 75 (149)
..+-+.|++.+..+|
T Consensus 83 ---~e~~~~A~~~I~~ll 97 (131)
T 1k1g_A 83 ---MENVKKAVEQIRNIL 97 (131)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 245667777776665
No 40
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=26.19 E-value=45 Score=23.05 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=27.5
Q ss_pred CCCcCCCCc--cCceEEEEEcCCc-----eEEEeccccCHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPTG-----VIAQAAEDRSQHKNRASALSRLRTLLA 76 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~ptG-----i~v~~~~~RSq~~Nr~~A~~~L~~~l~ 76 (149)
|+||.++++ .+|.|+|.-.+.+ -+|+..-+ ..+-+.|.+.+.+++.
T Consensus 27 GkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~---~e~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 27 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQ 79 (106)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS---HHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC---HHHHHHHHHHHHHHHh
Confidence 888988884 3556666654322 13333333 4566778777777664
No 41
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.19 E-value=25 Score=19.48 Aligned_cols=19 Identities=16% Similarity=0.079 Sum_probs=15.3
Q ss_pred hhhHHHHHHHhCCCccccc
Q 038082 130 LPFVINAAKIYGLKSGEIQ 148 (149)
Q Consensus 130 ~L~~~~aA~~L~~s~~~l~ 148 (149)
.+-..+.|+.||+|.+.++
T Consensus 21 g~s~~~ia~~lgvs~~Tv~ 39 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLY 39 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 3448999999999988764
No 42
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=24.88 E-value=25 Score=22.18 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=26.0
Q ss_pred CCCcCCCCc--cCceEEEEEcCC-----c---eEEEeccccCHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPT-----G---VIAQAAEDRSQHKNRASALSRLRTLL 75 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~pt-----G---i~v~~~~~RSq~~Nr~~A~~~L~~~l 75 (149)
|+||.+++. -.|.++|.-.+. | -.|..... ..+-..|...+.+++
T Consensus 19 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRV 73 (76)
T ss_dssp CSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES---HHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC---HHHHHHHHHHHHHHH
Confidence 899998884 445666654332 1 23333332 346677777776654
No 43
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=24.61 E-value=29 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=20.6
Q ss_pred HHHhhchhh---HHHHHHHhCCCcccccC
Q 038082 124 LPYSLLLPF---VINAAKIYGLKSGEIQE 149 (149)
Q Consensus 124 L~~llD~L~---~~~aA~~L~~s~~~l~~ 149 (149)
-..+|..|. ....|+.+|++.|++||
T Consensus 14 es~il~~la~~gq~~vA~~iGV~~StISR 42 (97)
T 1xwr_A 14 ESALLNKIAMLGTEKTAEAVGVDKSQISR 42 (97)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCCTTTHHH
T ss_pred HHHHHHHHHHHhHHHHHHHhCCCHHHHHH
Confidence 344555555 88999999999999986
No 44
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=24.05 E-value=32 Score=23.50 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=11.1
Q ss_pred ceEEEEEcCCceE
Q 038082 39 SAVRLKHAPTGVI 51 (149)
Q Consensus 39 s~V~l~h~ptGi~ 51 (149)
++|.|+|||.|+.
T Consensus 2 ~KvVIRrLPP~Lt 14 (91)
T 1uw4_A 2 SKVVIRRLPPTLT 14 (91)
T ss_dssp CEEEEEEECTTCC
T ss_pred cEEEEeCCCCCCC
Confidence 6899999998874
No 45
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=23.61 E-value=63 Score=20.99 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=30.4
Q ss_pred CCCcCCCCc--cCceEEEEEcCC-----c---eEEEeccccCHHHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPT-----G---VIAQAAEDRSQHKNRASALSRLRTLLALKV 79 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~pt-----G---i~v~~~~~RSq~~Nr~~A~~~L~~~l~~~~ 79 (149)
|+||.+++. -.|.++|.-.+. | -.|....+ ..+-+.|...+.+++....
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhccc
Confidence 889988883 445666654332 2 23333333 4577889988888876543
No 46
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=21.70 E-value=35 Score=21.62 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=26.4
Q ss_pred CCCcCCCCc--cCceEEEEEcC------Cc-eEEEeccccCHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAP------TG-VIAQAAEDRSQHKNRASALSRLRTLLA 76 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~p------tG-i~v~~~~~RSq~~Nr~~A~~~L~~~l~ 76 (149)
|+||.+++. -.|.++|.-.+ ++ +.|.. . ..+-+.|...+.+++.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G--~---~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITG--S---AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEE--C---HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEe--C---HHHHHHHHHHHHHHHH
Confidence 889998884 44566665443 34 33333 2 4566777777766653
No 47
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=21.29 E-value=32 Score=24.21 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.8
Q ss_pred EeccccCHHHHHHHHHHHHHHHH
Q 038082 53 QAAEDRSQHKNRASALSRLRTLL 75 (149)
Q Consensus 53 ~~~~~RSq~~Nr~~A~~~L~~~l 75 (149)
.+.++|+...+-..|+..|+..|
T Consensus 29 ~~~~~r~Rm~~lN~AF~~LR~~v 51 (97)
T 4aya_A 29 PVDDPMSLLYNMNDCYSKLKELV 51 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHHHHHC
Confidence 37788999999999999998875
No 48
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=21.20 E-value=38 Score=24.07 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=28.8
Q ss_pred CCCcCCCCc--cCceEEEEEcCC-----ceEEEeccccCHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPT-----GVIAQAAEDRSQHKNRASALSRLRTLLAL 77 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~pt-----Gi~v~~~~~RSq~~Nr~~A~~~L~~~l~~ 77 (149)
|+||.+++. ..|.|+|...+. .=.|...-+ ..+-+.|...+..++..
T Consensus 107 Gk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 107 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP---PDRCEHAARIINDLLQS 160 (164)
T ss_dssp CSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC---HHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC---HHHHHHHHHHHHHHHhh
Confidence 888988883 456777765431 222233332 35778888888777653
No 49
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=20.41 E-value=18 Score=25.38 Aligned_cols=19 Identities=11% Similarity=-0.074 Sum_probs=16.5
Q ss_pred hhHHHHHHHhCCCcccccC
Q 038082 131 PFVINAAKIYGLKSGEIQE 149 (149)
Q Consensus 131 L~~~~aA~~L~~s~~~l~~ 149 (149)
.-..+.|+.||.|++.+||
T Consensus 59 ~TQREIA~~lGiS~stISR 77 (101)
T 1jhg_A 59 MSQRELKNELGAGIATITR 77 (101)
T ss_dssp SCHHHHHHHHCCCHHHHHH
T ss_pred cCHHHHHHHHCCChhhhhH
Confidence 3488999999999998886
No 50
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=20.16 E-value=22 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=15.4
Q ss_pred hhhHHHHHHHhCCCccccc
Q 038082 130 LPFVINAAKIYGLKSGEIQ 148 (149)
Q Consensus 130 ~L~~~~aA~~L~~s~~~l~ 148 (149)
-+-..+.|+.||+|.+.++
T Consensus 31 g~s~~eIA~~lgis~~TV~ 49 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVR 49 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHH
Confidence 3348999999999998765
No 51
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=20.15 E-value=37 Score=24.31 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=30.1
Q ss_pred CCCcCCCCc--cCceEEEEEcCCce-------EEEeccccCHHHHHHHHHHHHHHHHHH
Q 038082 28 GPGGQHRNK--RESAVRLKHAPTGV-------IAQAAEDRSQHKNRASALSRLRTLLAL 77 (149)
Q Consensus 28 GpGGQ~vNk--~~s~V~l~h~ptGi-------~v~~~~~RSq~~Nr~~A~~~L~~~l~~ 77 (149)
|+||.+++. ..|.++|...+.|. .|+...+ ..+-+.|...+..++..
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQ 156 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHH
Confidence 899999885 45777776543431 3444443 34567788877777754
Done!