RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 038082
         (149 letters)



>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 112

 Score = 60.7 bits (147), Expect = 2e-13
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 25/84 (29%)

Query: 18  ECEMDAYKSSGPGGQHRNKRESAVRLKH-------------------------APTGVIA 52
              +   +SSGPGGQ+ NK  S   ++                              ++ 
Sbjct: 21  RLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVL 80

Query: 53  QAAEDRSQHKNRASALSRLRTLLA 76
            +   R Q +N A  L ++R ++A
Sbjct: 81  TSESSRYQFRNLAECLQKIRDMIA 104


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 50.8 bits (121), Expect = 7e-09
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 1   MNVLPNYLELTDDEL-FRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRS 59
             V P   +  D E+   +  +D Y++SG GGQH N+ ESAVR+ H PTG++ Q   DRS
Sbjct: 217 AFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRS 276

Query: 60  QHKNRASALSRLRTLL 75
           QHKN+  A+ +++  L
Sbjct: 277 QHKNKDQAMKQMKAKL 292


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 24/56 (42%), Positives = 40/56 (71%)

Query: 17  RECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLR 72
            + +++ +++SG GGQ+ NK ESAVR+ H PTG++     +RSQ++N+ +AL  LR
Sbjct: 196 EDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQYQNKQTALRILR 251


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 18  ECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAEDRSQHKNRASALSRLRTLL 75
           +  +D ++SSG GGQH N  +SA+R+ H PTG++ +  ++RSQHKN+A ALS L   +
Sbjct: 211 DLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARI 268


>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding
          protein 1 (Tip47), C-terminal domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 226

 Score = 31.0 bits (70), Expect = 0.034
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 6  NYLELTDDELFRECEMDAYKSSGPGGQHRNKRESAVRLKHAPTGVIAQAAE---DRSQH- 61
          N L LT+ EL                Q R ++   VRL      +   A E    + Q+ 
Sbjct: 1  NRLPLTEAELALIATPPEDSDMASLQQQRQEQNYFVRLGSLSERLRNHAYEHSLGKLQNA 60

Query: 62 KNRAS-ALSRLRTLLAL--KVRSSVNLDAYSPPPQLHQI 97
          + +A   L +L ++L L   V+  V+        +LHQ+
Sbjct: 61 RQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQM 99


>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG,
           communication domain {Pseudomonas sp. [TaxId: 306]}
          Length = 51

 Score = 22.3 bits (48), Expect = 8.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 126 YSLLLPFVINAAKIYGLKSGEI 147
           YS  L     AA  Y LK+ +I
Sbjct: 1   YSSFLRHAEIAAAKYNLKTLDI 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 496,200
Number of extensions: 19249
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 6
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.1 bits)