BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038084
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
 pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
           Niger: Refined At 2.3 Angstroms Resolution
 pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
           At 1.2 A Resolution
 pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
           At 1.3 A Resolution
          Length = 583

 Score = 32.0 bits (71), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 23/56 (41%)

Query: 171 EQSIIASPLEAVVESREAYLADHLGSSVPKNLSMAANIHHSLQVPSDCFQTWFSPN 226
           + S I   L + VE R        G   P  +SM  N  H  QV SD  + W  PN
Sbjct: 181 DYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPN 236


>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
          Length = 82

 Score = 28.5 bits (62), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 102 HILTERERRKKMRNMFSNXXXXXXXXXXKADKSTIVDEAVKYIKTLQHTHQTLEKQKF 159
           H   E+  R  + +              K +KS ++ +A+ YI+ LQH++Q L+++  
Sbjct: 10  HNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.128    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,359,936
Number of Sequences: 62578
Number of extensions: 246930
Number of successful extensions: 525
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 10
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)