Query 038084
Match_columns 282
No_of_seqs 228 out of 1286
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:24:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.4 1.2E-13 2.5E-18 97.2 5.3 51 98-148 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 2.1E-13 4.6E-18 96.9 6.1 55 97-151 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 2.6E-12 5.5E-17 89.4 6.6 50 103-152 1-52 (53)
4 KOG1319 bHLHZip transcription 99.1 2.1E-11 4.5E-16 104.7 2.6 75 94-168 58-138 (229)
5 KOG1318 Helix loop helix trans 99.0 8.5E-10 1.8E-14 105.8 6.7 63 93-155 228-293 (411)
6 KOG2483 Upstream transcription 98.7 7.1E-08 1.5E-12 86.7 9.1 69 93-161 54-124 (232)
7 KOG4304 Transcriptional repres 98.6 1.4E-08 3.1E-13 92.4 2.9 58 97-154 31-95 (250)
8 KOG2588 Predicted DNA-binding 98.5 1E-07 2.2E-12 98.7 5.7 67 96-162 274-340 (953)
9 KOG3561 Aryl-hydrocarbon recep 98.5 1.1E-07 2.4E-12 98.1 5.5 52 99-150 21-75 (803)
10 KOG3960 Myogenic helix-loop-he 98.4 1.1E-06 2.4E-11 79.0 8.0 66 96-161 116-182 (284)
11 KOG0561 bHLH transcription fac 98.2 8.7E-07 1.9E-11 81.5 3.3 63 98-160 60-123 (373)
12 KOG4029 Transcription factor H 98.1 4.3E-06 9.3E-11 75.2 4.6 65 93-157 104-171 (228)
13 cd04895 ACT_ACR_1 ACT domain-c 97.9 4.1E-05 8.9E-10 57.0 7.3 45 237-281 3-47 (72)
14 PLN03217 transcription factor 97.9 2.7E-05 5.8E-10 59.1 6.1 54 110-163 19-77 (93)
15 cd04927 ACT_ACR-like_2 Second 97.9 7.1E-05 1.5E-09 55.9 7.4 46 236-281 1-47 (76)
16 cd04897 ACT_ACR_3 ACT domain-c 97.8 7.3E-05 1.6E-09 56.1 7.2 45 237-281 3-47 (75)
17 cd04896 ACT_ACR-like_3 ACT dom 97.7 0.00017 3.7E-09 54.1 7.0 45 237-281 2-48 (75)
18 cd04900 ACT_UUR-like_1 ACT dom 97.7 0.00022 4.9E-09 52.5 7.5 45 237-281 3-48 (73)
19 cd04925 ACT_ACR_2 ACT domain-c 97.5 0.00064 1.4E-08 50.3 7.5 45 237-281 2-46 (74)
20 cd04899 ACT_ACR-UUR-like_2 C-t 97.2 0.0017 3.7E-08 46.6 7.4 45 237-281 2-46 (70)
21 cd04928 ACT_TyrKc Uncharacteri 97.2 0.002 4.2E-08 47.5 7.5 45 237-281 3-48 (68)
22 cd04926 ACT_ACR_4 C-terminal 97.2 0.002 4.3E-08 47.4 7.4 45 237-281 3-47 (72)
23 KOG3898 Transcription factor N 96.9 0.00066 1.4E-08 62.2 3.3 56 94-149 68-125 (254)
24 KOG4447 Transcription factor T 96.9 0.00045 9.7E-09 58.1 1.9 54 97-150 77-131 (173)
25 PF01842 ACT: ACT domain; Int 96.9 0.0071 1.5E-07 42.4 7.7 37 237-273 2-38 (66)
26 cd04873 ACT_UUR-ACR-like ACT d 96.6 0.014 3.1E-07 41.3 7.5 45 237-281 2-46 (70)
27 KOG3910 Helix loop helix trans 96.4 0.0019 4.1E-08 63.4 2.6 60 95-154 523-585 (632)
28 PF13740 ACT_6: ACT domain; PD 96.2 0.03 6.4E-07 41.5 7.6 47 235-281 2-48 (76)
29 cd04893 ACT_GcvR_1 ACT domains 95.8 0.043 9.4E-07 40.8 7.0 45 236-280 2-46 (77)
30 PRK05007 PII uridylyl-transfer 95.8 0.023 4.9E-07 60.7 7.4 49 233-281 806-854 (884)
31 KOG4395 Transcription factor A 95.7 0.02 4.3E-07 52.0 5.4 54 98-151 174-229 (285)
32 PF13291 ACT_4: ACT domain; PD 95.6 0.087 1.9E-06 38.9 7.7 46 235-280 6-53 (80)
33 PRK00275 glnD PII uridylyl-tra 95.4 0.069 1.5E-06 57.2 9.3 57 225-281 802-860 (895)
34 KOG3560 Aryl-hydrocarbon recep 95.3 0.019 4.2E-07 57.2 4.1 41 106-146 33-76 (712)
35 PRK03381 PII uridylyl-transfer 95.0 0.096 2.1E-06 55.2 8.7 48 234-281 706-753 (774)
36 PRK01759 glnD PII uridylyl-tra 94.9 0.065 1.4E-06 57.1 7.3 49 233-281 781-829 (854)
37 cd04869 ACT_GcvR_2 ACT domains 94.9 0.12 2.6E-06 38.0 6.8 35 238-272 2-36 (81)
38 PRK04374 PII uridylyl-transfer 94.9 0.12 2.5E-06 55.3 9.1 57 225-281 784-842 (869)
39 PRK05092 PII uridylyl-transfer 94.9 0.12 2.6E-06 55.6 9.1 57 225-281 831-889 (931)
40 PRK00194 hypothetical protein; 94.8 0.059 1.3E-06 40.8 5.0 43 235-277 3-45 (90)
41 cd04872 ACT_1ZPV ACT domain pr 94.8 0.065 1.4E-06 40.6 5.1 44 236-279 2-45 (88)
42 PRK03059 PII uridylyl-transfer 94.7 0.11 2.3E-06 55.5 8.1 48 234-281 785-832 (856)
43 cd04875 ACT_F4HF-DF N-terminal 94.6 0.11 2.5E-06 37.8 5.9 33 238-270 2-34 (74)
44 PRK03381 PII uridylyl-transfer 94.4 0.13 2.8E-06 54.2 7.9 48 234-281 598-645 (774)
45 cd04886 ACT_ThrD-II-like C-ter 94.2 0.21 4.5E-06 35.1 6.4 34 238-271 1-34 (73)
46 TIGR01693 UTase_glnD [Protein- 94.1 0.13 2.8E-06 54.8 7.2 48 234-281 778-825 (850)
47 TIGR01693 UTase_glnD [Protein- 94.1 0.16 3.5E-06 54.1 7.9 48 234-281 667-715 (850)
48 PRK01759 glnD PII uridylyl-tra 94.1 0.18 3.9E-06 53.7 8.3 57 225-281 665-724 (854)
49 PRK00275 glnD PII uridylyl-tra 93.8 0.18 4E-06 54.0 7.7 48 234-281 703-751 (895)
50 cd04877 ACT_TyrR N-terminal AC 93.8 0.26 5.7E-06 36.0 6.4 42 237-279 2-43 (74)
51 cd04887 ACT_MalLac-Enz ACT_Mal 93.7 0.41 8.9E-06 34.4 7.3 41 238-278 2-43 (74)
52 PRK03059 PII uridylyl-transfer 93.7 0.21 4.5E-06 53.4 7.8 48 234-281 677-725 (856)
53 PRK05007 PII uridylyl-transfer 93.7 0.24 5.3E-06 53.0 8.3 57 225-281 689-748 (884)
54 cd04870 ACT_PSP_1 CT domains f 93.0 0.39 8.5E-06 35.2 6.2 42 238-279 2-43 (75)
55 cd02116 ACT ACT domains are co 92.9 0.56 1.2E-05 29.8 6.4 34 238-271 1-34 (60)
56 COG2844 GlnD UTP:GlnB (protein 92.9 0.23 4.9E-06 52.2 6.3 57 225-281 779-837 (867)
57 cd04881 ACT_HSDH-Hom ACT_HSDH_ 92.9 0.46 1E-05 33.7 6.4 36 236-271 1-36 (79)
58 cd04879 ACT_3PGDH-like ACT_3PG 92.9 0.51 1.1E-05 32.7 6.4 43 238-280 2-46 (71)
59 cd04894 ACT_ACR-like_1 ACT dom 92.8 0.31 6.7E-06 35.3 5.1 43 237-279 2-44 (69)
60 cd04874 ACT_Af1403 N-terminal 92.8 0.57 1.2E-05 32.8 6.7 35 237-271 2-36 (72)
61 cd04889 ACT_PDH-BS-like C-term 92.7 0.55 1.2E-05 32.1 6.3 43 238-280 1-44 (56)
62 cd04903 ACT_LSD C-terminal ACT 92.5 0.6 1.3E-05 32.5 6.5 43 238-280 2-46 (71)
63 cd04876 ACT_RelA-SpoT ACT dom 92.5 0.57 1.2E-05 31.5 6.2 35 238-272 1-35 (71)
64 PRK05092 PII uridylyl-transfer 92.4 0.47 1E-05 51.1 8.3 48 234-281 731-779 (931)
65 PRK04374 PII uridylyl-transfer 92.3 0.45 9.7E-06 50.9 7.9 48 234-281 689-737 (869)
66 KOG3558 Hypoxia-inducible fact 92.3 0.11 2.5E-06 53.2 3.2 47 99-146 47-97 (768)
67 cd04908 ACT_Bt0572_1 N-termina 92.3 0.71 1.5E-05 32.8 6.6 40 237-276 3-42 (66)
68 KOG3582 Mlx interactors and re 92.0 0.03 6.5E-07 57.3 -1.2 72 97-168 650-725 (856)
69 cd04888 ACT_PheB-BS C-terminal 91.8 0.73 1.6E-05 33.1 6.3 35 237-271 2-36 (76)
70 PRK04435 hypothetical protein; 91.6 0.87 1.9E-05 38.2 7.5 49 231-279 65-114 (147)
71 cd04878 ACT_AHAS N-terminal AC 91.6 1.1 2.3E-05 31.2 6.9 35 237-271 2-36 (72)
72 cd04882 ACT_Bt0572_2 C-termina 91.5 0.65 1.4E-05 32.2 5.6 43 238-280 2-46 (65)
73 cd04880 ACT_AAAH-PDT-like ACT 89.9 1.4 3.1E-05 31.9 6.4 34 238-271 2-35 (75)
74 cd04905 ACT_CM-PDT C-terminal 89.7 1.9 4.1E-05 31.8 7.0 44 237-280 3-47 (80)
75 cd04909 ACT_PDH-BS C-terminal 89.2 2.7 5.7E-05 29.7 7.3 35 237-271 3-37 (69)
76 PRK08577 hypothetical protein; 88.7 2 4.3E-05 35.3 7.2 47 226-272 43-93 (136)
77 cd04883 ACT_AcuB C-terminal AC 88.3 2.8 6.1E-05 29.7 6.9 44 237-280 3-48 (72)
78 KOG3559 Transcriptional regula 87.8 0.61 1.3E-05 45.4 3.9 45 104-148 7-54 (598)
79 cd04884 ACT_CBS C-terminal ACT 87.5 2.5 5.4E-05 30.4 6.2 34 238-271 2-35 (72)
80 cd04902 ACT_3PGDH-xct C-termin 86.9 1.9 4.2E-05 30.4 5.4 44 238-281 2-47 (73)
81 COG2844 GlnD UTP:GlnB (protein 86.1 1.9 4.2E-05 45.5 6.7 54 228-281 677-731 (867)
82 PRK07334 threonine dehydratase 84.1 4.1 8.9E-05 39.6 7.7 37 235-271 326-362 (403)
83 PRK11152 ilvM acetolactate syn 83.7 6.7 0.00014 29.4 7.0 44 236-279 4-49 (76)
84 cd04901 ACT_3PGDH C-terminal A 81.0 1.4 3E-05 31.0 2.4 42 238-279 2-43 (69)
85 PRK06737 acetolactate synthase 79.4 7.2 0.00016 29.2 5.8 45 236-280 3-49 (76)
86 cd04931 ACT_PAH ACT domain of 78.9 9.7 0.00021 29.3 6.6 36 236-271 15-50 (90)
87 cd04904 ACT_AAAH ACT domain of 78.8 4.2 9E-05 29.7 4.4 34 238-271 3-36 (74)
88 cd04868 ACT_AK-like ACT domain 78.1 9.6 0.00021 24.9 5.8 35 245-279 13-47 (60)
89 KOG4447 Transcription factor T 77.0 1.9 4.1E-05 36.6 2.3 45 105-149 29-74 (173)
90 cd04885 ACT_ThrD-I Tandem C-te 75.8 11 0.00023 26.9 5.8 32 238-270 1-32 (68)
91 cd04892 ACT_AK-like_2 ACT doma 75.6 13 0.00028 24.8 6.0 34 237-270 2-38 (65)
92 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.7 18 0.00039 24.8 6.7 42 238-279 4-48 (66)
93 PF13710 ACT_5: ACT domain; PD 74.3 13 0.00028 26.5 5.8 37 244-280 1-39 (63)
94 cd04919 ACT_AK-Hom3_2 ACT doma 72.1 24 0.00051 24.3 6.8 36 244-279 13-48 (66)
95 cd04890 ACT_AK-like_1 ACT doma 71.8 19 0.00041 24.7 6.2 35 244-280 12-46 (62)
96 cd04929 ACT_TPH ACT domain of 69.9 19 0.00041 26.5 6.0 33 239-271 4-36 (74)
97 COG3830 ACT domain-containing 69.6 5.1 0.00011 31.1 2.9 40 236-275 4-43 (90)
98 cd04906 ACT_ThrD-I_1 First of 69.5 20 0.00044 26.7 6.3 43 236-280 2-47 (85)
99 TIGR00691 spoT_relA (p)ppGpp s 68.8 25 0.00055 36.8 8.8 52 225-276 595-652 (683)
100 COG4747 ACT domain-containing 68.5 18 0.00039 29.7 5.9 40 237-276 5-44 (142)
101 PRK13562 acetolactate synthase 68.4 20 0.00043 27.5 5.9 45 236-280 3-49 (84)
102 PRK11092 bifunctional (p)ppGpp 67.6 21 0.00045 37.6 7.8 49 225-273 611-664 (702)
103 PF02120 Flg_hook: Flagellar h 66.9 23 0.0005 26.0 6.1 49 224-272 26-80 (85)
104 cd04937 ACT_AKi-DapG-BS_2 ACT 65.2 35 0.00076 23.8 6.4 24 244-267 13-36 (64)
105 cd04930 ACT_TH ACT domain of t 64.6 15 0.00032 29.6 4.8 36 236-271 42-77 (115)
106 cd04916 ACT_AKiii-YclM-BS_2 AC 63.7 40 0.00087 22.9 6.5 36 244-279 13-48 (66)
107 PRK10872 relA (p)ppGpp synthet 63.3 24 0.00053 37.3 7.4 47 225-271 651-702 (743)
108 cd04912 ACT_AKiii-LysC-EC-like 62.6 40 0.00086 24.4 6.5 35 243-279 12-46 (75)
109 cd04933 ACT_AK1-AT_1 ACT domai 62.3 41 0.00088 25.1 6.6 42 237-280 3-47 (78)
110 cd04932 ACT_AKiii-LysC-EC_1 AC 60.8 45 0.00097 24.5 6.5 35 243-279 12-46 (75)
111 PRK00227 glnD PII uridylyl-tra 60.3 22 0.00048 37.3 6.5 48 233-281 544-592 (693)
112 cd04934 ACT_AK-Hom3_1 CT domai 59.0 47 0.001 24.2 6.4 40 238-279 4-46 (73)
113 cd04935 ACT_AKiii-DAPDC_1 ACT 59.0 46 0.001 24.3 6.4 36 243-280 12-47 (75)
114 cd04918 ACT_AK1-AT_2 ACT domai 58.9 30 0.00065 24.3 5.2 36 244-279 12-47 (65)
115 cd04921 ACT_AKi-HSDH-ThrA-like 58.7 47 0.001 23.8 6.4 36 244-279 13-48 (80)
116 COG4492 PheB ACT domain-contai 56.7 32 0.0007 28.7 5.5 45 234-278 71-116 (150)
117 cd04924 ACT_AK-Arch_2 ACT doma 55.6 62 0.0013 21.9 6.7 35 244-278 13-47 (66)
118 PRK08178 acetolactate synthase 55.4 44 0.00095 26.2 5.9 39 234-272 7-45 (96)
119 PRK06382 threonine dehydratase 54.9 42 0.00092 32.6 7.1 35 235-269 330-364 (406)
120 PF13840 ACT_7: ACT domain ; P 52.7 20 0.00044 25.4 3.4 33 235-267 6-42 (65)
121 PRK08198 threonine dehydratase 52.6 58 0.0013 31.5 7.6 38 233-270 325-362 (404)
122 TIGR01127 ilvA_1Cterm threonin 50.8 35 0.00076 32.6 5.8 37 233-269 303-339 (380)
123 PRK11589 gcvR glycine cleavage 50.7 40 0.00086 29.6 5.6 37 236-272 96-132 (190)
124 cd04915 ACT_AK-Ectoine_2 ACT d 50.5 40 0.00087 23.9 4.7 35 245-279 14-48 (66)
125 cd04891 ACT_AK-LysC-DapG-like_ 49.3 72 0.0016 20.8 5.9 28 243-270 9-36 (61)
126 COG3074 Uncharacterized protei 47.4 28 0.0006 25.8 3.4 30 135-164 11-40 (79)
127 cd04923 ACT_AK-LysC-DapG-like_ 46.5 85 0.0018 20.8 6.3 26 244-269 12-37 (63)
128 COG0317 SpoT Guanosine polypho 45.3 46 0.001 35.0 5.9 49 225-273 612-665 (701)
129 cd04936 ACT_AKii-LysC-BS-like_ 45.1 90 0.002 20.7 6.3 26 244-269 12-37 (63)
130 PRK06291 aspartate kinase; Pro 43.7 99 0.0021 30.7 7.8 50 230-279 316-368 (465)
131 PF02344 Myc-LZ: Myc leucine z 42.4 29 0.00064 21.6 2.4 16 107-122 14-29 (32)
132 TIGR00656 asp_kin_monofn aspar 41.2 1.1E+02 0.0023 29.5 7.5 41 229-269 254-297 (401)
133 smart00338 BRLZ basic region l 39.9 25 0.00054 24.9 2.2 26 141-166 25-50 (65)
134 PF06005 DUF904: Protein of un 39.6 57 0.0012 24.1 4.1 27 136-162 12-38 (72)
135 COG3978 Acetolactate synthase 39.1 1.1E+02 0.0024 23.4 5.5 36 236-271 4-39 (86)
136 KOG3582 Mlx interactors and re 38.9 9.7 0.00021 39.7 -0.2 61 97-160 786-850 (856)
137 cd04913 ACT_AKii-LysC-BS-like_ 37.8 1.3E+02 0.0028 20.5 6.4 26 243-268 10-35 (75)
138 PRK08210 aspartate kinase I; R 37.3 1.4E+02 0.0029 28.9 7.5 40 230-269 266-306 (403)
139 PRK15422 septal ring assembly 35.2 68 0.0015 24.3 3.9 30 135-164 11-40 (79)
140 TIGR00719 sda_beta L-serine de 34.5 2.7E+02 0.0059 24.4 8.4 54 227-280 140-195 (208)
141 PRK06635 aspartate kinase; Rev 33.6 1.5E+02 0.0033 28.5 7.2 41 231-271 258-299 (404)
142 PRK08526 threonine dehydratase 33.5 1E+02 0.0022 30.1 6.0 38 233-270 324-361 (403)
143 PF05088 Bac_GDH: Bacterial NA 33.1 63 0.0014 37.1 4.9 37 234-270 488-524 (1528)
144 TIGR00657 asp_kinases aspartat 31.9 2.2E+02 0.0048 27.8 8.1 51 229-279 296-348 (441)
145 PF00170 bZIP_1: bZIP transcri 31.8 66 0.0014 22.7 3.3 23 141-163 25-47 (64)
146 cd04920 ACT_AKiii-DAPDC_2 ACT 31.3 1E+02 0.0022 21.5 4.2 26 244-269 12-37 (63)
147 PHA03386 P10 fibrous body prot 30.8 93 0.002 24.3 4.1 36 131-166 1-36 (94)
148 PRK06291 aspartate kinase; Pro 30.7 2.1E+02 0.0047 28.3 7.9 52 229-280 392-446 (465)
149 PF09849 DUF2076: Uncharacteri 30.5 1.2E+02 0.0026 27.9 5.5 49 110-160 6-73 (247)
150 PRK11899 prephenate dehydratas 30.1 2E+02 0.0044 26.7 7.1 36 236-271 195-230 (279)
151 PRK09034 aspartate kinase; Rev 29.0 2.1E+02 0.0045 28.4 7.4 50 229-278 379-431 (454)
152 PF14197 Cep57_CLD_2: Centroso 27.8 1.1E+02 0.0024 22.3 4.0 29 134-162 39-67 (69)
153 TIGR01268 Phe4hydrox_tetr phen 27.7 1.1E+02 0.0025 30.4 5.2 36 236-271 17-52 (436)
154 PF08826 DMPK_coil: DMPK coile 27.7 1.3E+02 0.0028 21.6 4.2 29 134-162 31-59 (61)
155 PF01166 TSC22: TSC-22/dip/bun 27.5 91 0.002 22.3 3.3 29 133-164 15-43 (59)
156 PF14992 TMCO5: TMCO5 family 27.4 93 0.002 29.1 4.3 27 135-161 144-170 (280)
157 cd04910 ACT_AK-Ectoine_1 ACT d 26.8 1.7E+02 0.0036 21.6 4.8 34 245-280 14-47 (71)
158 COG2716 GcvR Glycine cleavage 26.7 87 0.0019 27.3 3.7 36 235-270 92-127 (176)
159 TIGR00656 asp_kin_monofn aspar 26.5 3.2E+02 0.0068 26.2 8.1 49 230-280 332-383 (401)
160 PF00585 Thr_dehydrat_C: C-ter 25.5 68 0.0015 24.5 2.6 48 233-280 8-57 (91)
161 PRK11790 D-3-phosphoglycerate 25.5 81 0.0018 30.8 3.8 46 234-279 337-382 (409)
162 PRK09084 aspartate kinase III; 25.3 3.1E+02 0.0066 27.1 7.8 39 230-268 301-342 (448)
163 PLN02551 aspartokinase 25.1 2.3E+02 0.0051 28.7 7.1 37 232-268 363-402 (521)
164 PRK08210 aspartate kinase I; R 25.0 2.8E+02 0.006 26.7 7.4 38 228-265 332-372 (403)
165 PLN02551 aspartokinase 25.0 3.1E+02 0.0066 27.9 7.9 51 229-279 439-491 (521)
166 KOG4005 Transcription factor X 24.9 2.4E+02 0.0052 25.9 6.3 20 100-119 61-81 (292)
167 PRK08818 prephenate dehydrogen 24.8 1.9E+02 0.0042 28.0 6.1 34 238-271 298-332 (370)
168 PRK06635 aspartate kinase; Rev 24.7 3.1E+02 0.0067 26.3 7.6 49 229-279 334-385 (404)
169 PRK13581 D-3-phosphoglycerate 24.7 2.1E+02 0.0045 29.0 6.6 52 229-280 446-499 (526)
170 PF06305 DUF1049: Protein of u 24.6 74 0.0016 22.3 2.5 15 145-159 51-65 (68)
171 PF07716 bZIP_2: Basic region 24.3 50 0.0011 22.6 1.5 21 142-162 25-45 (54)
172 PF08946 Osmo_CC: Osmosensory 24.0 97 0.0021 21.0 2.7 27 135-161 8-38 (46)
173 PF15392 Joubert: Joubert synd 24.0 1.8E+02 0.0038 27.8 5.4 29 96-124 54-82 (329)
174 PRK09466 metL bifunctional asp 23.7 2.5E+02 0.0054 30.2 7.2 49 232-280 314-365 (810)
175 PRK00227 glnD PII uridylyl-tra 22.9 66 0.0014 33.9 2.7 41 236-280 632-672 (693)
176 PRK11898 prephenate dehydratas 22.8 2.4E+02 0.0053 26.1 6.2 36 236-271 197-233 (283)
177 PRK09436 thrA bifunctional asp 22.4 3.1E+02 0.0067 29.5 7.7 48 230-277 310-360 (819)
178 TIGR01270 Trp_5_monoox tryptop 22.3 1.5E+02 0.0032 29.8 4.9 36 236-271 32-67 (464)
179 PF09006 Surfac_D-trimer: Lung 21.8 1.3E+02 0.0028 20.5 3.0 19 144-162 1-19 (46)
180 PRK07431 aspartate kinase; Pro 21.7 3.5E+02 0.0076 27.6 7.7 40 228-267 341-383 (587)
181 PHA02114 hypothetical protein 21.6 1.1E+02 0.0025 24.3 3.1 30 238-267 87-116 (127)
182 PRK09436 thrA bifunctional asp 21.4 3.7E+02 0.008 28.9 8.0 51 229-279 390-443 (819)
183 PF01056 Myc_N: Myc amino-term 21.4 31 0.00068 33.0 0.0 16 11-28 278-293 (329)
184 PF05687 DUF822: Plant protein 21.2 2.2E+02 0.0047 24.1 4.9 40 98-137 11-51 (150)
185 COG4747 ACT domain-containing 21.1 1.2E+02 0.0026 25.0 3.3 40 238-278 72-113 (142)
186 cd04911 ACT_AKiii-YclM-BS_1 AC 21.1 99 0.0021 23.1 2.7 27 244-270 13-39 (76)
187 PRK15385 magnesium transport p 20.5 2.9E+02 0.0064 25.0 6.0 38 234-271 141-180 (225)
188 PF02577 DNase-RNase: Bifuncti 20.3 2.1E+02 0.0046 23.3 4.8 34 245-278 51-84 (135)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.45 E-value=1.2e-13 Score=97.23 Aligned_cols=51 Identities=37% Similarity=0.636 Sum_probs=47.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCC----CCCCChhhHHHHHHHHHHHHH
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHL----PPKADKSTIVDEAVKYIKTLQ 148 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~~K~~k~~iL~~ai~YIk~Lq 148 (282)
+|..|+..||+||++||+.|..|+.+||.. ..|++|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999986 378999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.44 E-value=2.1e-13 Score=96.87 Aligned_cols=55 Identities=45% Similarity=0.727 Sum_probs=51.4
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
..+..|+..||+||++||..|..|+++||... .|++|++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999984 89999999999999999999875
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.35 E-value=2.6e-12 Score=89.35 Aligned_cols=50 Identities=42% Similarity=0.634 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 038084 103 ILTERERRKKMRNMFSNLHALLPHL--PPKADKSTIVDEAVKYIKTLQHTHQ 152 (282)
Q Consensus 103 ~~~ER~RR~~in~~~~~Lr~lvP~~--~~K~~k~~iL~~ai~YIk~Lq~~~~ 152 (282)
+..||+||++||+.|..|+++||.. ..|++|++||.+||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999974 3789999999999999999998875
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.13 E-value=2.1e-11 Score=104.67 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=66.0
Q ss_pred CCCCccccccHHHHHHHHHHHHHHHHHHhhCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 038084 94 GGESEHEMHILTERERRKKMRNMFSNLHALLPHLP------PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQGATT 167 (282)
Q Consensus 94 ~~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~------~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~~~~ 167 (282)
.++.+|..|..+||+||+.||..++.|+.|||.+. .|++|+-||.++|+||.+|++++.+.+++...|+..++.
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtA 137 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTA 137 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457899999999999999999999999999864 388999999999999999999999999998888766554
Q ss_pred c
Q 038084 168 V 168 (282)
Q Consensus 168 ~ 168 (282)
+
T Consensus 138 L 138 (229)
T KOG1319|consen 138 L 138 (229)
T ss_pred H
Confidence 3
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.97 E-value=8.5e-10 Score=105.85 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=55.5
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 038084 93 SGGESEHEMHILTERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQHTHQTLE 155 (282)
Q Consensus 93 ~~~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq~~~~~L~ 155 (282)
.++..+|..||.+||+||++||+++.+|..|||.+. .|..|..||..+++||++||+..++..
T Consensus 228 ~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 228 ERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 345568899999999999999999999999999974 477799999999999999999887433
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.70 E-value=7.1e-08 Score=86.74 Aligned_cols=69 Identities=23% Similarity=0.370 Sum_probs=58.2
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038084 93 SGGESEHEMHILTERERRKKMRNMFSNLHALLPHLPPKAD--KSTIVDEAVKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 93 ~~~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~~K~~--k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l 161 (282)
......|..||..||+||..|++.|..|+.+||.+..... .+.||+.|+.||+.|+.+.....+.+++|
T Consensus 54 ~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 54 SSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455689999999999999999999999999999864333 58999999999999998877776655554
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.64 E-value=1.4e-08 Score=92.42 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=49.7
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP-------PKADKSTIVDEAVKYIKTLQHTHQTL 154 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-------~K~~k~~iL~~ai~YIk~Lq~~~~~L 154 (282)
.++..|-++||+||.+||+.|.+|++|||... .|++|++||..|++|++.|+.....-
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 35567779999999999999999999999642 58899999999999999999765443
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.53 E-value=1e-07 Score=98.70 Aligned_cols=67 Identities=24% Similarity=0.379 Sum_probs=62.9
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 96 ESEHEMHILTERERRKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 96 ~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
..+|.+||.+|||.|..||+++.+|+.+||+...|+.|..+|..||+||++|+...+.+..++..++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 5789999999999999999999999999999889999999999999999999999999988777654
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.51 E-value=1.1e-07 Score=98.12 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=49.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 038084 99 HEMHILTERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQHT 150 (282)
Q Consensus 99 r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq~~ 150 (282)
|+.|+.+||+||++||..+.+|.+|||.+. -|+||.+||.+||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 688999999999999999999999999986 7999999999999999999985
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.39 E-value=1.1e-06 Score=78.99 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=57.1
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHhh-CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038084 96 ESEHEMHILTERERRKKMRNMFSNLHAL-LPHLPPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 96 ~~~r~~h~~~ER~RR~~in~~~~~Lr~l-vP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l 161 (282)
..+|..-.++||+|-+|+|+.|..|+.- +++-..++.|++||..||+||..||.-++++.+....+
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 3577888899999999999999999854 45555899999999999999999999999888777655
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.21 E-value=8.7e-07 Score=81.50 Aligned_cols=63 Identities=30% Similarity=0.418 Sum_probs=54.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFE 160 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 160 (282)
+|+.-|.-||+|...||..|..||+|+|.-. .|++|+.||+.+.+||..|+.+.-+|-.++.+
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~e 123 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGE 123 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccch
Confidence 5677788899999999999999999999754 69999999999999999999887777654433
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.06 E-value=4.3e-06 Score=75.21 Aligned_cols=65 Identities=29% Similarity=0.390 Sum_probs=55.7
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 038084 93 SGGESEHEMHILTERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQHTHQTLEKQ 157 (282)
Q Consensus 93 ~~~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~ 157 (282)
.....++..+|.+||+|-..+|..|..||.+||..+ +|.+|+++|..||.||.+|++-++.-...
T Consensus 104 ~~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 104 SQTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred cchhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 345567888999999999999999999999999865 58999999999999999999766655543
No 13
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=4.1e-05 Score=56.97 Aligned_cols=45 Identities=33% Similarity=0.404 Sum_probs=42.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|+|.++.|||+|.+|.++|.++||+|..|.|++.++++..+|+.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV 47 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHV 47 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEE
Confidence 588999999999999999999999999999999999999999875
No 14
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.93 E-value=2.7e-05 Score=59.10 Aligned_cols=54 Identities=20% Similarity=0.449 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhCCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038084 110 RKKMRNMFSNLHALLPHLP-----PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 110 R~~in~~~~~Lr~lvP~~~-----~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
-++|++.+..|+.|+|... .|.+-+.+|++|.+||+.|+.++..|.+.+.+|..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999853 35566799999999999999999999999998874
No 15
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.86 E-value=7.1e-05 Score=55.93 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=42.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEe
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYMIHA 281 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~i~a 281 (282)
+.|+|.|+.|+|+|.+|..+|..+||+|+.|.|.+ .++.++.+|+.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V 47 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFI 47 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEE
Confidence 46899999999999999999999999999999996 88999988875
No 16
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.85 E-value=7.3e-05 Score=56.08 Aligned_cols=45 Identities=18% Similarity=0.194 Sum_probs=42.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|+|.|+.|||||.+|..+|-++|++|.+|.|++.++++.-+|+.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV 47 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYI 47 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEE
Confidence 488999999999999999999999999999999999999988874
No 17
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.69 E-value=0.00017 Score=54.10 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=42.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVS--SDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs--~~~~~~~~~i~a 281 (282)
.|.|.|+.|||||.+|.++|..+||+|..|.|+ +.++++..+|+.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv 48 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV 48 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence 488999999999999999999999999999999 999999988874
No 18
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.68 E-value=0.00022 Score=52.47 Aligned_cols=45 Identities=18% Similarity=0.373 Sum_probs=40.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD-RYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~-~~~~~~~i~a 281 (282)
.|.|.|+.++|+|.+|..+|..+||+|+.|.+.+. ++.++.+|+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v 48 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVV 48 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEE
Confidence 58899999999999999999999999999999876 6888888764
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.47 E-value=0.00064 Score=50.34 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=42.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|+|.++.++|+|.+|..+|.++|++|+.|.+.+.++.++.+|+.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V 46 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYV 46 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEE
Confidence 488999999999999999999999999999999999999988875
No 20
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0017 Score=46.60 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=41.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|.|.++.++|+|.+|+.+|.+++++|+++.+.+.++..+.+|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i 46 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYV 46 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEE
Confidence 478899999999999999999999999999999988888888875
No 21
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.22 E-value=0.002 Score=47.47 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=40.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~i~a 281 (282)
.|-|.++.++|+|..|..+|..+||+|+.|.+.+ .++.++.+|.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V 48 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVV 48 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEE
Confidence 5788999999999999999999999999999976 57888888865
No 22
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.19 E-value=0.002 Score=47.36 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=40.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|.|.++.++|+|.+|..+|.++|++|+++.+.+.++..+.+|+.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v 47 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYV 47 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEE
Confidence 477889999999999999999999999999999887888888764
No 23
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=96.94 E-value=0.00066 Score=62.24 Aligned_cols=56 Identities=23% Similarity=0.301 Sum_probs=50.2
Q ss_pred CCCCccccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHH
Q 038084 94 GGESEHEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQH 149 (282)
Q Consensus 94 ~~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~ 149 (282)
....+|.+-|..||+|...+|+.|+.||.++|... .|+.|+..|..|-+||..|++
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 35567889999999999999999999999999633 799999999999999999985
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.93 E-value=0.00045 Score=58.05 Aligned_cols=54 Identities=28% Similarity=0.492 Sum_probs=50.1
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHT 150 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~ 150 (282)
.++.-|++.||+|=..+|+.|..||.++|.++ .|.+|.-.|+-|..||.+|-+-
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 37889999999999999999999999999987 7999999999999999999753
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.88 E-value=0.0071 Score=42.44 Aligned_cols=37 Identities=32% Similarity=0.580 Sum_probs=34.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRY 273 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~ 273 (282)
.|.|.|+.+||+|.+|..+|.++|++|.++.+....+
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5889999999999999999999999999999999766
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.57 E-value=0.014 Score=41.31 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=39.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|.|.|+.++|+|.+|+.+|.++++.|.++.+.+.++.....|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v 46 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYV 46 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE
Confidence 477899999999999999999999999999998876677777664
No 27
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.42 E-value=0.0019 Score=63.42 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCCccccccHHHHHHHHHHHHHHHHHHhhCCC-CC--CCCChhhHHHHHHHHHHHHHHHHHHH
Q 038084 95 GESEHEMHILTERERRKKMRNMFSNLHALLPH-LP--PKADKSTIVDEAVKYIKTLQHTHQTL 154 (282)
Q Consensus 95 ~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~-~~--~K~~k~~iL~~ai~YIk~Lq~~~~~L 154 (282)
+..+|+..|.+||-|-..||+.|.+|-.+.-. +. ....|.-||..||..|-.|++||.+-
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 44688999999999999999999999988642 21 23467899999999999999998764
No 28
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.23 E-value=0.03 Score=41.50 Aligned_cols=47 Identities=17% Similarity=0.337 Sum_probs=39.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.+.|.|.++.|||++..|..+|.++|.+|+.++.+..++.....+.+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v 48 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLV 48 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEE
Confidence 46799999999999999999999999999999999998887776654
No 29
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=95.84 E-value=0.043 Score=40.76 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=39.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
+.|.+.|+.++|+...|...|.++|.+|+.++....++..++.+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~ 46 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTML 46 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEE
Confidence 568999999999999999999999999999999987776655543
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.83 E-value=0.023 Score=60.74 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 233 GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 233 g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
++.-.|.|.+..|||||.+|.++|.++||+|.+|-|++.++++..+|+.
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV 854 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFIL 854 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEE
Confidence 4556799999999999999999999999999999999999999999875
No 31
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=95.69 E-value=0.02 Score=52.00 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=47.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
+|..-+..||+|...+|..|+.||..||... .|++|-..|+.|-.||--|-..+
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 5567788999999999999999999999864 68999999999999999887544
No 32
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.55 E-value=0.087 Score=38.94 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
.+.|+|.+..++|+|.+|..+|.+.|+.|.++++... ++.....|.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~ 53 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLT 53 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEE
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEE
Confidence 4679999999999999999999999999999999985 455555443
No 33
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.43 E-value=0.069 Score=57.16 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=48.6
Q ss_pred CeEEEEEE--CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 225 PNVVVNMC--GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 225 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+.|.+.-. ++...|.|++..+||||.+|..+|..+||+|+.|.|++.+++++.+|+.
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V 860 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEE
Confidence 34444433 3456799999999999999999999999999999999999999999975
No 34
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=95.27 E-value=0.019 Score=57.18 Aligned_cols=41 Identities=24% Similarity=0.513 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHH
Q 038084 106 ERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKT 146 (282)
Q Consensus 106 ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~ 146 (282)
-|+-|+++|..++.|.+|+|.-. +|+||.+||.-+|.|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 45569999999999999999743 799999999999999863
No 35
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.01 E-value=0.096 Score=55.23 Aligned_cols=48 Identities=25% Similarity=0.323 Sum_probs=44.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+...|.|.++.+||+|.+|..+|..+|++|++|.|++.++.++.+|+.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V 753 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV 753 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEE
Confidence 347899999999999999999999999999999999999999998875
No 36
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.93 E-value=0.065 Score=57.08 Aligned_cols=49 Identities=12% Similarity=0.293 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 233 GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 233 g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
++-..|.|.+..|||||.+|.++|.++||+|..|-|++.++++..+|+.
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv 829 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFIL 829 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEE
Confidence 3456799999999999999999999999999999999999999998875
No 37
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=94.93 E-value=0.12 Score=38.00 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=32.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
|.|.|+.++|++.+|-+.|.++|++|...+..+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 67999999999999999999999999999998865
No 38
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.93 E-value=0.12 Score=55.28 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=49.3
Q ss_pred CeEEEEEE--CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 225 PNVVVNMC--GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 225 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+.|.+.-. ++-..|.|.+..+||||.+|..+|..+||+|+.|.|++.+++++.+|+.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V 842 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQI 842 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEE
Confidence 45555442 3457799999999999999999999999999999999999999999875
No 39
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.87 E-value=0.12 Score=55.58 Aligned_cols=57 Identities=26% Similarity=0.370 Sum_probs=48.8
Q ss_pred CeEEEEEE--CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 225 PNVVVNMC--GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 225 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+.|.+.-. +....|.|.++.+||+|.+|..+|.++||+|..|.|.+.++++..+|++
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v 889 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEE
Confidence 45555432 3456799999999999999999999999999999999999999998876
No 40
>PRK00194 hypothetical protein; Validated
Probab=94.85 E-value=0.059 Score=40.84 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=37.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEE
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMY 277 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~ 277 (282)
.+.|.|.|+.+||++..|...|-++|++|+..+..+.++..+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~ 45 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTM 45 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEE
Confidence 4679999999999999999999999999999988776554444
No 41
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.78 E-value=0.065 Score=40.61 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
+.|.+.|+.+||++..|...|-++|++|++.+..+.++..+..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~ 45 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIM 45 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEE
Confidence 56899999999999999999999999999999888666544443
No 42
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.70 E-value=0.11 Score=55.51 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=44.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+...|.|.++.+||+|.+|..+|..+||+|+.|.|++.++.++.+|+.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V 832 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI 832 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE
Confidence 456799999999999999999999999999999999999999999875
No 43
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.63 E-value=0.11 Score=37.81 Aligned_cols=33 Identities=18% Similarity=0.465 Sum_probs=31.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
|.|.|+.++|++.+|...|-++|++|+.....+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~ 34 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV 34 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence 789999999999999999999999999998886
No 44
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.38 E-value=0.13 Score=54.23 Aligned_cols=48 Identities=27% Similarity=0.325 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+...|.|+|+.|||+|.+|..+|..+|++|+.|.+.+.++.++.+|.+
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V 645 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVV 645 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEE
Confidence 567899999999999999999999999999999999988888888865
No 45
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.21 E-value=0.21 Score=35.06 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=30.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
|.|.++.+||.|.+|+.+|.+.|++|++.+....
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 4578899999999999999999999998887654
No 46
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.11 E-value=0.13 Score=54.77 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=44.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
+...|.|.|..|||+|.+|.++|.++|++|.++.|++.++++..+|++
T Consensus 778 ~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v 825 (850)
T TIGR01693 778 KATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825 (850)
T ss_pred CeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEE
Confidence 457799999999999999999999999999999999999988888875
No 47
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.09 E-value=0.16 Score=54.07 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=43.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVS-SDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs-~~~~~~~~~i~a 281 (282)
+...|.|.++.++|+|.+|..+|..+||+|+.|.|. +.++.++.+|+.
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V 715 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVV 715 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEE
Confidence 456799999999999999999999999999999998 678888888875
No 48
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.08 E-value=0.18 Score=53.74 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=47.9
Q ss_pred CeEEEEEE--CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEe
Q 038084 225 PNVVVNMC--GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYMIHA 281 (282)
Q Consensus 225 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~i~a 281 (282)
+.|.+.-. .+...|.|.++.++|+|.+|..+|..+||+|+.|.|.+ .++.++.+|++
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V 724 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIV 724 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEE
Confidence 44555432 35567999999999999999999999999999999977 78999988875
No 49
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.82 E-value=0.18 Score=54.01 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=42.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEE-EeeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHV-SSDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~v-s~~~~~~~~~i~a 281 (282)
+...|.|.|+.++|+|.+|..+|..+||+|+.|.| ++.++.++-+|++
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V 751 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIV 751 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEE
Confidence 45779999999999999999999999999999998 5567888888875
No 50
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.81 E-value=0.26 Score=35.95 Aligned_cols=42 Identities=14% Similarity=0.337 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.|+|.+..++|+|.+|+.+|.++++++...++... +.+.+.|
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i 43 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNF 43 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEe
Confidence 47899999999999999999999999999999775 4444444
No 51
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.74 E-value=0.41 Score=34.42 Aligned_cols=41 Identities=12% Similarity=0.213 Sum_probs=34.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR-YRSMYM 278 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~-~~~~~~ 278 (282)
|+|.+..++|+|.+|+.+|.+.|.+|..++..... +.....
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~ 43 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRD 43 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEE
Confidence 78889999999999999999999999999987753 444333
No 52
>PRK03059 PII uridylyl-transferase; Provisional
Probab=93.71 E-value=0.21 Score=53.37 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=43.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEE-EeeCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHV-SSDRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~v-s~~~~~~~~~i~a 281 (282)
+...|.|+|+.++|+|..|..+|..+||+|+.|.| ++.++.++.+|.+
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V 725 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQV 725 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEE
Confidence 56789999999999999999999999999999999 4578899998875
No 53
>PRK05007 PII uridylyl-transferase; Provisional
Probab=93.69 E-value=0.24 Score=53.01 Aligned_cols=57 Identities=23% Similarity=0.322 Sum_probs=46.1
Q ss_pred CeEEEEEE--CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEe
Q 038084 225 PNVVVNMC--GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD-RYRSMYMIHA 281 (282)
Q Consensus 225 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~-~~~~~~~i~a 281 (282)
+-|.+.-. ++...|.|+|+.++|+|..|..+|..+||+|+.|.|.+. ++.++-+|+.
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V 748 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIV 748 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEE
Confidence 34554432 356789999999999999999999999999999999775 5588777764
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.97 E-value=0.39 Score=35.16 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=35.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|.|..+.|||++.+|.++|-++|++|+..+.+..++.....+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~ 43 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGI 43 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEE
Confidence 678899999999999999999999999998877766544433
No 55
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=92.93 E-value=0.56 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.612 Sum_probs=30.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
|.|.++.++|.+.+|+.+|..+++.|........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4678888999999999999999999999998764
No 56
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=0.23 Score=52.17 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=48.3
Q ss_pred CeEEEEEE--CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 225 PNVVVNMC--GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 225 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
|.|.+.-. .+.-.++|.+..|||+|..|-.+|.+++|+|.+|.|+++|.++..+|..
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~v 837 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEE
Confidence 55655433 3457799999999999999999999999999999999999988777754
No 57
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.86 E-value=0.46 Score=33.75 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
++|.|.+..++|+|.+|+..|.+.++++...+....
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 478999999999999999999999999999987654
No 58
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.85 E-value=0.51 Score=32.71 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=36.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR--YRSMYMIH 280 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~--~~~~~~i~ 280 (282)
+.|....++|+|.+|+.+|.+++++|.+..+.... +...+.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLD 46 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEE
Confidence 56788999999999999999999999999987754 56555554
No 59
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.85 E-value=0.31 Score=35.34 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=39.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.|.|.||.+.||--++.+.+-++||.|+...+++.+...+..|
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~ 44 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVF 44 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEE
Confidence 4889999999999999999999999999999999987666555
No 60
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.84 E-value=0.57 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=31.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.|.|.++.++|.|.+|+..|.+++++|...+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 37788999999999999999999999999888765
No 61
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.69 E-value=0.55 Score=32.08 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=35.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR-YRSMYMIH 280 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~-~~~~~~i~ 280 (282)
|.|..+.++|.|.+|+.+|-+.|++|....+...+ +..+..|.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~ 44 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLI 44 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEE
Confidence 35678899999999999999999999888887754 56555554
No 62
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.54 E-value=0.6 Score=32.48 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=34.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
|.|.+..++|.|.+|+..|.+++++|........ ++...+.|.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~ 46 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIE 46 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEE
Confidence 6778899999999999999999999999887662 344444454
No 63
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=92.45 E-value=0.57 Score=31.49 Aligned_cols=35 Identities=26% Similarity=0.526 Sum_probs=30.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
|+|.+..++|.+.+|+..|.++++++....+...+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC
Confidence 46778899999999999999999999999887654
No 64
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.42 E-value=0.47 Score=51.12 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=42.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~i~a 281 (282)
+...|.|.|+.++|+|.+|..+|..+|++|+.|.|.+ .++.++.+|..
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V 779 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWI 779 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEE
Confidence 5678999999999999999999999999999999977 67887777764
No 65
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.34 E-value=0.45 Score=50.94 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=43.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYMIHA 281 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~i~a 281 (282)
+...|.|.|+.++|+|.+|..+|..+||+|+.|.|.+ .++.++.+|.+
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V 737 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEV 737 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEE
Confidence 5678999999999999999999999999999999977 68889888875
No 66
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.30 E-value=0.11 Score=53.22 Aligned_cols=47 Identities=34% Similarity=0.541 Sum_probs=40.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhCCCCC----CCCChhhHHHHHHHHHHH
Q 038084 99 HEMHILTERERRKKMRNMFSNLHALLPHLP----PKADKSTIVDEAVKYIKT 146 (282)
Q Consensus 99 r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~----~K~~k~~iL~~ai~YIk~ 146 (282)
|++-.-+-|.||.|=|+-|.+|..+|| ++ ..+||++|+.-||.|++.
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHHH
Confidence 344456689999999999999999999 44 679999999999999874
No 67
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=92.29 E-value=0.71 Score=32.80 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSM 276 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~ 276 (282)
.|.|..+.+||.|.+|+.+|.+.|++|.+.-+...++..+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~ 42 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGI 42 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCE
Confidence 4677889999999999999999999999998766555433
No 68
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=92.00 E-value=0.03 Score=57.27 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=63.0
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP----PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQGATTV 168 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~----~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~~~~~ 168 (282)
++...|+.+|.+||..++-.|..|-+++.+.. .|+.++.-++.++.||..++.+...+.+|...|+.++..+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~ 725 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISEL 725 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHH
Confidence 68899999999999999999999999997653 5788888999999999999999999998888777665533
No 69
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.79 E-value=0.73 Score=33.11 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=31.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.|.|.++.++|+|.+|+.+|.+++++|...+....
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 57888999999999999999999999999987553
No 70
>PRK04435 hypothetical protein; Provisional
Probab=91.65 E-value=0.87 Score=38.22 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=40.1
Q ss_pred EECCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEE
Q 038084 231 MCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD-RYRSMYMI 279 (282)
Q Consensus 231 i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~-~~~~~~~i 279 (282)
..|..+.|.+.+..++|+|.+|+.+|.++|++|+..+.+.. ++....+|
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~ 114 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTI 114 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEE
Confidence 45788999999999999999999999999999999987653 44433333
No 71
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.55 E-value=1.1 Score=31.16 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
+|.|.+..++|+|.+|+..|.+++++|...+....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 47788899999999999999999999999988764
No 72
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.47 E-value=0.65 Score=32.18 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=34.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR--YRSMYMIH 280 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~--~~~~~~i~ 280 (282)
|.|.-+.++|.|.+++.+|.++|++|.+....... +...+.|.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ 46 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFR 46 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEE
Confidence 56778899999999999999999999887765543 45555554
No 73
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=89.94 E-value=1.4 Score=31.95 Aligned_cols=34 Identities=12% Similarity=0.326 Sum_probs=29.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
|.+..+.++|.|.+|+.+|.++|+++++......
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~ 35 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPS 35 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeec
Confidence 3455577999999999999999999999977664
No 74
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.66 E-value=1.9 Score=31.79 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=34.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD-RYRSMYMIH 280 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~-~~~~~~~i~ 280 (282)
.|.+..+.++|.|.+|+..|.++|+++++...... ++...|.|+
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~ 47 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFF 47 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEE
Confidence 35566678999999999999999999999987664 234445544
No 75
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.19 E-value=2.7 Score=29.73 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=30.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.|.|.++.++|.|.+|+..|.++|++|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 47888999999999999999999999998876554
No 76
>PRK08577 hypothetical protein; Provisional
Probab=88.74 E-value=2 Score=35.29 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=38.6
Q ss_pred eEEEEEE----CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 226 NVVVNMC----GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 226 ~V~V~i~----g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
+|.+.-. .+.+.|.|.+..++|+|.+|+.+|.++++++.+.+..+..
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 5555432 2368899999999999999999999999999998887653
No 77
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.30 E-value=2.8 Score=29.69 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
.|.|..+.++|.|.+|+..|.++|++|.+...... .+...+.|+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~ 48 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFR 48 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEE
Confidence 57788899999999999999999999998865443 345445444
No 78
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=87.80 E-value=0.61 Score=45.42 Aligned_cols=45 Identities=31% Similarity=0.447 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHH
Q 038084 104 LTERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQ 148 (282)
Q Consensus 104 ~~ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq 148 (282)
..-|.||++=|-.|.+|..++|-.. +..||++|+.-|..|||.-.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~ 54 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRN 54 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHH
Confidence 3478899999999999999999643 67999999999999998643
No 79
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.46 E-value=2.5 Score=30.36 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
+.|.-+.+||.|.+|+..|.++|++|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5677889999999999999999999999876654
No 80
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=86.90 E-value=1.9 Score=30.45 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=34.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEe
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS--DRYRSMYMIHA 281 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~--~~~~~~~~i~a 281 (282)
+-|..+.++|.+.+|...|.++|++|.+..+.. .++...+.|..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 345778899999999999999999998887655 34666666653
No 81
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.13 E-value=1.9 Score=45.48 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=46.3
Q ss_pred EEEEECCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEe
Q 038084 228 VVNMCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYMIHA 281 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~i~a 281 (282)
.++.......|.|.|+.+|.+|..|..++...|++|+.|+|-+ .++..+.+|..
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv 731 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIV 731 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEE
Confidence 4445567788999999999999999999999999999999966 56778888853
No 82
>PRK07334 threonine dehydratase; Provisional
Probab=84.09 E-value=4.1 Score=39.56 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=34.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.+.|.|.+..|+|+|.+|+.+|.+.+++|.++++...
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4889999999999999999999999999999998764
No 83
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=83.74 E-value=6.7 Score=29.36 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMI 279 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i 279 (282)
..|.|...++||.|..|+.++...|++|.+.++... .+..-.+|
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti 49 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIEL 49 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEE
Confidence 457888899999999999999999999999999884 44444444
No 84
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=80.96 E-value=1.4 Score=30.95 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|-+.+..++|+|.+|+.+|.+.|+++...+....++..+..|
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~ 43 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVI 43 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEE
Confidence 345778899999999999999999997776655444444433
No 85
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=79.36 E-value=7.2 Score=29.23 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR--YRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~--~~~~~~i~ 280 (282)
..|.+....+||+|.+|..++...|++|.+.++...+ +..-.+|.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~ 49 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLT 49 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEE
Confidence 4588889999999999999999999999999988643 44444443
No 86
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.95 E-value=9.7 Score=29.31 Aligned_cols=36 Identities=8% Similarity=0.274 Sum_probs=31.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..+.++|.|.+||.+|..+|+++++...-..
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~ 50 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPS 50 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC
Confidence 446666688999999999999999999999988664
No 87
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=78.82 E-value=4.2 Score=29.74 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=29.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
|-+..++++|.|.+||..+..+|+++++...-..
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~ 36 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPS 36 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4455577999999999999999999999988664
No 88
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=78.05 E-value=9.6 Score=24.87 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 245 KPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 245 r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.+|.+.+++++|.+.++.|.....+..+..+.+++
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 67999999999999999998776654333333433
No 89
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=77.01 E-value=1.9 Score=36.63 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHH
Q 038084 105 TERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQH 149 (282)
Q Consensus 105 ~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~ 149 (282)
.||.|-+++++.+.-|+.|+|+.+ .++.+...|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 488899999999999999999986 344444447777777777653
No 90
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.81 E-value=11 Score=26.89 Aligned_cols=32 Identities=22% Similarity=0.433 Sum_probs=27.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
+.|.-+.+||-|.+++++|.+ |.+|+..+...
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~ 32 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRN 32 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence 356778999999999999999 99999887765
No 91
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=75.58 E-value=13 Score=24.80 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=26.7
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 237 QISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 237 ~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
.|.|.+. ..+|.+.+|+.+|.+.++.|...+.+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3555443 468899999999999999998887654
No 92
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=74.71 E-value=18 Score=24.78 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=29.2
Q ss_pred EEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 238 ISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 238 I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|.|.+ ...+|++.+|+++|.+.|+.|.-.+.+..+..+.+++
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v 48 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVI 48 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEE
Confidence 44544 3468999999999999999997665443334444443
No 93
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=74.29 E-value=13 Score=26.46 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=30.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSS--DRYRSMYMIH 280 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~--~~~~~~~~i~ 280 (282)
.++|.|.+|+.++...|++|-+.++.. .++..-++|.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~ 39 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIV 39 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEE
Confidence 368999999999999999999999988 5566655554
No 94
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.13 E-value=24 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.3
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.++|.+.+++++|.+.|++|.-.+.+..+..+.+++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v 48 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINISCVI 48 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 468999999999999999996665444344444443
No 95
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=71.80 E-value=19 Score=24.70 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=27.1
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
..+|.+.+|+++|+++++.|..... ..+.+.+++.
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~ 46 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLD 46 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEe
Confidence 4688999999999999999999854 3355555553
No 96
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.85 E-value=19 Score=26.53 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=28.4
Q ss_pred EEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 239 SVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 239 ~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
-+..+.++|.|.+|+..++.+|+.+.+...-..
T Consensus 4 ~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~ 36 (74)
T cd04929 4 IFSLKNEVGGLAKALKLFQELGINVVHIESRKS 36 (74)
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccC
Confidence 344577899999999999999999999988664
No 97
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=69.62 E-value=5.1 Score=31.07 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=34.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRS 275 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~ 275 (282)
+.|.|.-..|+|+...|..+|-++|++|+..+=+-.+++.
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~f 43 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFF 43 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhc
Confidence 5688888889999999999999999999998766655543
No 98
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.53 E-value=20 Score=26.73 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=30.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe---eCCeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS---DRYRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~---~~~~~~~~i~ 280 (282)
.+|.|.-+.+||-|.+++.+|- +.+|....... ....+++.|.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie 47 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVS 47 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEE
Confidence 5688999999999999999998 55666555443 2344454444
No 99
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=68.84 E-value=25 Score=36.81 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=41.7
Q ss_pred CeEEEEEECC-----eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC-CeEE
Q 038084 225 PNVVVNMCGD-----DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR-YRSM 276 (282)
Q Consensus 225 ~~V~V~i~g~-----~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~-~~~~ 276 (282)
.-|.|..... .+.|.|.+..++|+|.+|+.+|-+.+++|.++++.... +...
T Consensus 595 r~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~ 652 (683)
T TIGR00691 595 KIIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAI 652 (683)
T ss_pred cEEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEE
Confidence 3466666432 46799999999999999999999999999999998763 4433
No 100
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=68.54 E-value=18 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=35.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSM 276 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~ 276 (282)
+|.|..+.+||-|..+...|-+.|+++-..++.-.+++-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGI 44 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGI 44 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcce
Confidence 5889999999999999999999999999988877665433
No 101
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=68.39 E-value=20 Score=27.48 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=35.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR--YRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~--~~~~~~i~ 280 (282)
..|.+....++|+|.+|..++-..|++|.+.+++... +..-.+|.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtiv 49 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQ 49 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEE
Confidence 3578888999999999999999999999988887743 44444443
No 102
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=67.60 E-value=21 Score=37.62 Aligned_cols=49 Identities=14% Similarity=0.039 Sum_probs=40.3
Q ss_pred CeEEEEEEC-----CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 038084 225 PNVVVNMCG-----DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRY 273 (282)
Q Consensus 225 ~~V~V~i~g-----~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~ 273 (282)
.-|.|.... -.+.|.|.+..++|+|.+|+.+|-+.+++|.++++...++
T Consensus 611 r~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~ 664 (702)
T PRK11092 611 KFMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDG 664 (702)
T ss_pred eeEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 346666643 2467999999999999999999999999999999877653
No 103
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=66.91 E-value=23 Score=26.04 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=36.0
Q ss_pred CCeEEEEEECCeEEEEEEcCCCC------ChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 224 SPNVVVNMCGDDAQISVCSPRKP------GLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 224 ~~~V~V~i~g~~~~I~I~c~~r~------glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
.-.|.|++.++.+.|.|.+.... .-+..+-++|+..|+.|.+.+|...+
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~~ 80 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQGS 80 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS-
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEECC
Confidence 35777788899999999997743 35668899999999999999887643
No 104
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=65.17 E-value=35 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHHHhCCceEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
..+|++.+++.+|.+.|+.|....
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999997433
No 105
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.56 E-value=15 Score=29.62 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..++++|.|.+||..+..+|+++++...-..
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~ 77 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPS 77 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcC
Confidence 345556688999999999999999999999988664
No 106
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.70 E-value=40 Score=22.94 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
..++.+.+++.+|.+.|++|.-.+.+..+..+.+++
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v 48 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGSSEISIMIGV 48 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEE
Confidence 478999999999999999997666543333333433
No 107
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=63.26 E-value=24 Score=37.32 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=39.2
Q ss_pred CeEEEEEEC-----CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 225 PNVVVNMCG-----DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 225 ~~V~V~i~g-----~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.-|.|...+ -.+.|.|.+..++|+|.+|..+|.+.+++|+++++.+.
T Consensus 651 R~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~ 702 (743)
T PRK10872 651 RIVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSD 702 (743)
T ss_pred eEEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEc
Confidence 346676643 24678999999999999999999999999999999765
No 108
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=62.60 E-value=40 Score=24.38 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
...+|.+.+|+++|.+.|+.|..... .+..+.+++
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v 46 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTL 46 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEE
Confidence 34689999999999999999988753 334444444
No 109
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.34 E-value=41 Score=25.09 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=30.5
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 237 QISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 237 ~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
+|.|.. +..+|.+.+|+++|++.|++|-.... ..+.+.+++.
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~ 47 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLD 47 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEE
Confidence 355554 34789999999999999999988854 2255555554
No 110
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.84 E-value=45 Score=24.46 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=26.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
+..+|.+.+|+++|.++|+.|-....+. ..+.+++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~s~--~~iSftv 46 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITTSE--ISVALTL 46 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEeecC--CEEEEEE
Confidence 4578999999999999999998885422 4444444
No 111
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=60.32 E-value=22 Score=37.33 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=38.9
Q ss_pred CCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 233 GDDAQISVCS-PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 233 g~~~~I~I~c-~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.++..+.|.. +.++|+|.++..+|--+++.|.+|++.+ ++..+..|.+
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v 592 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDV 592 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEE
Confidence 4445666666 9999999999999999999999999999 6665555543
No 112
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=59.02 E-value=47 Score=24.23 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=28.5
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 238 ISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 238 I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|.|.+. ..+|.+.+|+++|+++|+.|-.... ..+.+.+++
T Consensus 4 I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv 46 (73)
T cd04934 4 INIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMAL 46 (73)
T ss_pred EEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEE
Confidence 455553 3689999999999999999988854 224444444
No 113
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.02 E-value=46 Score=24.33 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
+..+|++.+|+++|+++++.|-.... ..+.+.+++.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~ 47 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLD 47 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEe
Confidence 34689999999999999999988854 2245555553
No 114
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.91 E-value=30 Score=24.28 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=27.7
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
+.+|++.+++.+|.+.|+.|.-.+.++.+..+.+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v 47 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLIV 47 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 357899999999999999997777666555554444
No 115
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=58.73 E-value=47 Score=23.78 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
..+|.+.+++++|.+.++.|.-.+.+..+..+.+++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v 48 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSEHSISFVV 48 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEE
Confidence 468999999999999999997776554333333333
No 116
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=56.75 E-value=32 Score=28.74 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=36.3
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe-eCCeEEEE
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS-DRYRSMYM 278 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~-~~~~~~~~ 278 (282)
..+.+.+....|-|.|.+++.++-..++.|++.+=+- .+++.-.+
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvt 116 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVT 116 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEE
Confidence 4567888889999999999999999999999987654 45544433
No 117
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.59 E-value=62 Score=21.90 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYM 278 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~ 278 (282)
..++.+.+++++|.+.|+.|.-.+.+..+..+.++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~ 47 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSEYNISFV 47 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEE
Confidence 46899999999999999999666543333333333
No 118
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=55.38 E-value=44 Score=26.23 Aligned_cols=39 Identities=10% Similarity=0.291 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
....|.+....+||+|.+|.-.+-..|++|.+.++...+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te 45 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQ 45 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecC
Confidence 345688999999999999999999999998888887643
No 119
>PRK06382 threonine dehydratase; Provisional
Probab=54.87 E-value=42 Score=32.58 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=31.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
.+.|.|.-+.+||.|.+|+..|.+++++|++....
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 46788889999999999999999999999988764
No 120
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=52.68 E-value=20 Score=25.44 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=26.2
Q ss_pred eEEEEEEcC----CCCChHHHHHHHHHhCCceEEEEE
Q 038084 235 DAQISVCSP----RKPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 235 ~~~I~I~c~----~r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
-..|+|..+ ..+|++.+|+.+|-+.|+.|...+
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 345666665 378999999999999999998887
No 121
>PRK08198 threonine dehydratase; Provisional
Probab=52.55 E-value=58 Score=31.46 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=33.9
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 233 GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 233 g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
+..+.|.|.-+.+||.|.+|+..|-+.|.+|+..+...
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 45578999999999999999999999999999888764
No 122
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=50.78 E-value=35 Score=32.64 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=33.1
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 233 GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 233 g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
|..+.|.|.-+.+||.|.+|++.+-+.+.+|++....
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 4456899999999999999999999999999998765
No 123
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=50.75 E-value=40 Score=29.57 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
+.|.|....+||++..|-++|-++|++|...+.-+..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~ 132 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQP 132 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeec
Confidence 6788889999999999999999999999998887653
No 124
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=50.46 E-value=40 Score=23.86 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 245 KPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 245 r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
++|++.+++++|.+.|++|.-.+.+..+..+.+.+
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V 48 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVV 48 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEE
Confidence 57899999999999999997777666544444444
No 125
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.27 E-value=72 Score=20.76 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=23.7
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
+..+|.+.+++.+|.+.++.|...+.+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 5678999999999999999998766543
No 126
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.42 E-value=28 Score=25.82 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 135 TIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 135 ~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
.-++.||+-|.-||-.+++|++++..|...
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 346789999999999999999888766443
No 127
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.52 E-value=85 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
..+|.+.+++.+|.+.++.|...+.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 46899999999999999999887743
No 128
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=45.27 E-value=46 Score=35.02 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=40.0
Q ss_pred CeEEEEEEC-----CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 038084 225 PNVVVNMCG-----DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRY 273 (282)
Q Consensus 225 ~~V~V~i~g-----~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~ 273 (282)
.-|.|.... ..+.|.|....++|+|.+|+++|-+.+..|++++..+.++
T Consensus 612 r~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~ 665 (701)
T COG0317 612 RVIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKD 665 (701)
T ss_pred eEEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCC
Confidence 345565532 3467889999999999999999999999999999988633
No 129
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=45.10 E-value=90 Score=20.71 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
..+|.+.+++.+|.+.++.|.-.+.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 46899999999999999999887743
No 130
>PRK06291 aspartate kinase; Provisional
Probab=43.73 E-value=99 Score=30.67 Aligned_cols=50 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred EEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 230 NMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 230 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
....+-+.|.|... ..+|.+.+|+++|.++|+.|...+-++....+.++|
T Consensus 316 t~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V 368 (465)
T PRK06291 316 TLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVV 368 (465)
T ss_pred EeeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEE
Confidence 33456678888764 478999999999999999998876544444454444
No 131
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=42.38 E-value=29 Score=21.63 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 038084 107 RERRKKMRNMFSNLHA 122 (282)
Q Consensus 107 R~RR~~in~~~~~Lr~ 122 (282)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788999999999985
No 132
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=41.22 E-value=1.1e+02 Score=29.46 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=33.5
Q ss_pred EEEECCeEEEEEE---cCCCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 229 VNMCGDDAQISVC---SPRKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 229 V~i~g~~~~I~I~---c~~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
|....+-+.|.|. ...++|.+.+|+.+|.++++.|...+.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 4455677889888 3568999999999999999999877654
No 133
>smart00338 BRLZ basic region leucin zipper.
Probab=39.93 E-value=25 Score=24.92 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQGAT 166 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~~~~ 166 (282)
-.||..|+.+++.|+.++..|...+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888887765443
No 134
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.60 E-value=57 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 136 IVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 136 iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
-+..||+-|.-|+.++++|+.++..+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 367899999999999999998866553
No 135
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=39.05 E-value=1.1e+02 Score=23.37 Aligned_cols=36 Identities=11% Similarity=0.283 Sum_probs=32.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
+.+.|...-+|+.|..|+.+.+..|+-|...+.+..
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~ 39 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAA 39 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccc
Confidence 457788888999999999999999999999999885
No 136
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=38.87 E-value=9.7 Score=39.68 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=51.3
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHL----PPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFE 160 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~----~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 160 (282)
-.+..|+..+|+||-.+.+.|..|-+|.|.+ ..++++.+||. +.|+.+++.-+.+.+....
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 4668899999999999999999999999964 25778899998 8999999888888775544
No 137
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=37.80 E-value=1.3e+02 Score=20.46 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEE
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHV 268 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~v 268 (282)
+..+|.+.+|+.+|.+.|+.|.-...
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 56799999999999999999975543
No 138
>PRK08210 aspartate kinase I; Reviewed
Probab=37.29 E-value=1.4e+02 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=32.7
Q ss_pred EEECCeEEEEEEcCCC-CChHHHHHHHHHhCCceEEEEEEE
Q 038084 230 NMCGDDAQISVCSPRK-PGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 230 ~i~g~~~~I~I~c~~r-~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
....+.+.|.|..... +|.+.+|+.+|.++|+.|.....+
T Consensus 266 t~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 266 AHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred EEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 3345678888887654 999999999999999999988655
No 139
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.19 E-value=68 Score=24.28 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 135 TIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 135 ~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
+-++.||+-|.-||-++++|+.++..+.+.
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999988877554
No 140
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=34.51 E-value=2.7e+02 Score=24.44 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=40.9
Q ss_pred EEEEEECCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 227 VVVNMCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 227 V~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
..|.+.+...++-+....+||.+-+|-..|-+++++|-..+++.. ++..+-.|.
T Consensus 140 ~~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~ 195 (208)
T TIGR00719 140 FAIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIE 195 (208)
T ss_pred EEEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEE
Confidence 344455555566666678999999999999999999999999984 455555443
No 141
>PRK06635 aspartate kinase; Reviewed
Probab=33.56 E-value=1.5e+02 Score=28.48 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=31.8
Q ss_pred EECCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 231 MCGDDAQISVCS-PRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 231 i~g~~~~I~I~c-~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
...+-+.|.|.. ..++|.+.+|+++|.+.|+.|...+.+..
T Consensus 258 ~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~ 299 (404)
T PRK06635 258 FDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVS 299 (404)
T ss_pred ecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC
Confidence 344556677665 34789999999999999999998766543
No 142
>PRK08526 threonine dehydratase; Provisional
Probab=33.54 E-value=1e+02 Score=30.10 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=34.1
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 233 GDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 233 g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
|..+.+.|.-+.+||.|.+++..|-+.+.+|+......
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 34678999999999999999999999999999988855
No 143
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=33.06 E-value=63 Score=37.11 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=32.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
+.+.++|....++..|++||-+||++||.|+.-.--.
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~ 524 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYE 524 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecce
Confidence 4588999999999999999999999999999876544
No 144
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=31.93 E-value=2.2e+02 Score=27.84 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=35.5
Q ss_pred EEEECCeEEEEEEcCC-C-CChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 229 VNMCGDDAQISVCSPR-K-PGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 229 V~i~g~~~~I~I~c~~-r-~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|....+-+.|.|.... . +|.+.+|+++|.++|+.|....-++.+..+.++|
T Consensus 296 It~~~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I 348 (441)
T TIGR00657 296 LSLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSISFTV 348 (441)
T ss_pred EEEeCCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEE
Confidence 3445566778887643 3 7999999999999999998886333333344433
No 145
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.80 E-value=66 Score=22.65 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
..||..|+.++..|+.++..|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777776653
No 146
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.29 E-value=1e+02 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
..+|++.+++.+|.+.++.++....+
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC
Confidence 57899999999999988888655433
No 147
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.77 E-value=93 Score=24.29 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=30.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 038084 131 ADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQGAT 166 (282)
Q Consensus 131 ~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~~~ 166 (282)
|+|..||.....-|+.+-.+|..|+.++..++....
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n~~ 36 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEEDSQ 36 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhcch
Confidence 678899999999999999999999988888765433
No 148
>PRK06291 aspartate kinase; Provisional
Probab=30.73 E-value=2.1e+02 Score=28.29 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=38.9
Q ss_pred EEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 229 VNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 229 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
|.+..+-+.|.|... .++|++.+++.+|.+.|++|+-.+.++.+..+.+.|.
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~ 446 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVD 446 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEe
Confidence 455556677877774 4789999999999999999987776665555555543
No 149
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=30.51 E-value=1.2e+02 Score=27.85 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhCCCCC-------------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038084 110 RKKMRNMFSNLHALLPHLP-------------------PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFE 160 (282)
Q Consensus 110 R~~in~~~~~Lr~lvP~~~-------------------~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 160 (282)
|.-|...|..|+..=.... -.|-...||+++. ||.|+++|++|+.++..
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~A--L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQA--LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 4577888888887655421 0133334444432 68889999999988765
No 150
>PRK11899 prephenate dehydratase; Provisional
Probab=30.13 E-value=2e+02 Score=26.70 Aligned_cols=36 Identities=6% Similarity=-0.016 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..+.+||.|.+||.++-..||+++...+-..
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~ 230 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMV 230 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeec
Confidence 445556678999999999999999999999988775
No 151
>PRK09034 aspartate kinase; Reviewed
Probab=29.03 E-value=2.1e+02 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=35.4
Q ss_pred EEEECCeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEE
Q 038084 229 VNMCGDDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYM 278 (282)
Q Consensus 229 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~ 278 (282)
|.+..+-+.|.|.. ...+|++.+++.+|.+.|++|.-.+.++.+..+.+.
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~v 431 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFG 431 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEE
Confidence 44556667788854 357899999999999999999877654433333333
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=27.76 E-value=1.1e+02 Score=22.33 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 134 STIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 134 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
+.-|++|+.-+..|+.+++.|.++.+.++
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46688999999999999999999987653
No 153
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=27.69 E-value=1.1e+02 Score=30.35 Aligned_cols=36 Identities=8% Similarity=0.276 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..+.++|.|.+||.++..+|+++++...-..
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPs 52 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPS 52 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccC
Confidence 345556677899999999999999999999988653
No 154
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.66 E-value=1.3e+02 Score=21.57 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 134 STIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 134 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
..-|++|=...+.|..+++.|+.++++++
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788999999999999999999988764
No 155
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.52 E-value=91 Score=22.27 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 133 KSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 133 k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
-+.+|.+ -|+.|+.++..|+.|+..|+.-
T Consensus 15 EVevLK~---~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 15 EVEVLKE---QIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp SHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 3556654 4688999999999999887643
No 156
>PF14992 TMCO5: TMCO5 family
Probab=27.43 E-value=93 Score=29.10 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038084 135 TIVDEAVKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 135 ~iL~~ai~YIk~Lq~~~~~L~~~~~~l 161 (282)
.+..+++.||+.||+.+++++.+++.+
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557799999999999999999988765
No 157
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=26.78 E-value=1.7e+02 Score=21.56 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 245 KPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 245 r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
..|.-..||++|.++++.++.- .++.+.+-|.+-
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~ 47 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTITHYLA 47 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEE
Confidence 4678889999999999999988 556666666654
No 158
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=26.72 E-value=87 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.306 Sum_probs=30.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
-+.+.+....|||++-++...|..+|+++.+....+
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~ 127 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRT 127 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeee
Confidence 356788888999999999999999999987766644
No 159
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=26.53 E-value=3.2e+02 Score=26.22 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=33.9
Q ss_pred EEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 230 NMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 230 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
.+..+-+.|.|... .++|.+.+++++|.+.|++|+... +.+..+.+.|+
T Consensus 332 ~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~is~vv~ 383 (401)
T TIGR00656 332 EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETNISFLVD 383 (401)
T ss_pred EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEe
Confidence 33344455666653 589999999999999999998644 44555555443
No 160
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=25.51 E-value=68 Score=24.49 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCChHHHHHHHHHhCC-ceEEEEEEEe-eCCeEEEEEE
Q 038084 233 GDDAQISVCSPRKPGLLTTIFYILEKHN-LDVVSAHVSS-DRYRSMYMIH 280 (282)
Q Consensus 233 g~~~~I~I~c~~r~glL~~Il~aLe~lg-LdVv~a~vs~-~~~~~~~~i~ 280 (282)
+.++++.|.-|-+||-|.+.+.+|-... +.-.+-..+. ..+.+++.|.
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~ 57 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIE 57 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEE
Confidence 3567777777777777777777775544 3333332222 2345555554
No 161
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=25.48 E-value=81 Score=30.82 Aligned_cols=46 Identities=15% Similarity=0.318 Sum_probs=37.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
....|-|.-..+||++.+|..+|-+++++|-...+...++..+..|
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 3455667778899999999999999999998888888776666655
No 162
>PRK09084 aspartate kinase III; Validated
Probab=25.26 E-value=3.1e+02 Score=27.13 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=31.9
Q ss_pred EEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEE
Q 038084 230 NMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHV 268 (282)
Q Consensus 230 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~v 268 (282)
....+.+.|+|.+. ..+|.+.+|+++|.++++.|...+.
T Consensus 301 t~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 301 ALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred EeeCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 34456788999875 4689999999999999999988764
No 163
>PLN02551 aspartokinase
Probab=25.13 E-value=2.3e+02 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=30.7
Q ss_pred ECCeEEEEEEcCC---CCChHHHHHHHHHhCCceEEEEEE
Q 038084 232 CGDDAQISVCSPR---KPGLLTTIFYILEKHNLDVVSAHV 268 (282)
Q Consensus 232 ~g~~~~I~I~c~~---r~glL~~Il~aLe~lgLdVv~a~v 268 (282)
..+-+.|.|.+.. .+|.+.+|+.+|.++|+.|.....
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss 402 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 402 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEec
Confidence 3456788998764 789999999999999999988853
No 164
>PRK08210 aspartate kinase I; Reviewed
Probab=25.02 E-value=2.8e+02 Score=26.75 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=29.9
Q ss_pred EEEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEE
Q 038084 228 VVNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVS 265 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~ 265 (282)
.+.+..+-+.|.|... .++|.+.+++++|.+.++.|+.
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 3455556666777663 5789999999999999999985
No 165
>PLN02551 aspartokinase
Probab=25.02 E-value=3.1e+02 Score=27.89 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=36.2
Q ss_pred EEEECCeEEEEEEcC--CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 229 VNMCGDDAQISVCSP--RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 229 V~i~g~~~~I~I~c~--~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|.+..+-+.|.|... +.+|++.+++.+|.+.|++|.-.+.++.+-.+.+.|
T Consensus 439 V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV 491 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIV 491 (521)
T ss_pred EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEE
Confidence 344455566777654 478999999999999999997777655444554444
No 166
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.86 E-value=2.4e+02 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=11.8
Q ss_pred cccc-HHHHHHHHHHHHHHHH
Q 038084 100 EMHI-LTERERRKKMRNMFSN 119 (282)
Q Consensus 100 ~~h~-~~ER~RR~~in~~~~~ 119 (282)
..|. +-|+--|.+++.+..+
T Consensus 61 L~HLS~EEK~~RrKLKNRVAA 81 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKNRVAA 81 (292)
T ss_pred hcccCHHHHHHHHHHHHHHHH
Confidence 4554 3466667777766543
No 167
>PRK08818 prephenate dehydrogenase; Provisional
Probab=24.84 E-value=1.9e+02 Score=27.99 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=29.0
Q ss_pred EEEEcC-CCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 238 ISVCSP-RKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 238 I~I~c~-~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
|.+.-+ .+||.|.+|+..|-..|+++.+..+...
T Consensus 298 l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~ 332 (370)
T PRK08818 298 LSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRT 332 (370)
T ss_pred EEEECCCCCCChHHHHHHHHHHcCcccceEEEecc
Confidence 444556 8999999999999999999999999554
No 168
>PRK06635 aspartate kinase; Reviewed
Probab=24.67 E-value=3.1e+02 Score=26.34 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=34.8
Q ss_pred EEEECCeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 229 VNMCGDDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 229 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|.+..+-+.|.|.. ...+|.+.+|+++|.+.|++|..... .+..+.+.+
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s--s~~~is~vv 385 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST--SEIKISVLI 385 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe--cCCeEEEEE
Confidence 44455666778765 45789999999999999999988653 234444443
No 169
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=24.66 E-value=2.1e+02 Score=28.96 Aligned_cols=52 Identities=8% Similarity=0.261 Sum_probs=39.1
Q ss_pred EEEECCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEE
Q 038084 229 VNMCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS--DRYRSMYMIH 280 (282)
Q Consensus 229 V~i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~--~~~~~~~~i~ 280 (282)
|.+.++...+-+....+||.+..|...|-+.+++|-+.+++. .++..+..|.
T Consensus 446 v~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~ 499 (526)
T PRK13581 446 VDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLS 499 (526)
T ss_pred EEeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEE
Confidence 444444445555667899999999999999999999998886 3466666554
No 170
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.56 E-value=74 Score=22.34 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 038084 145 KTLQHTHQTLEKQKF 159 (282)
Q Consensus 145 k~Lq~~~~~L~~~~~ 159 (282)
+.+++++++++++.+
T Consensus 51 ~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 51 RRLRKELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 171
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.33 E-value=50 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 038084 142 KYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 142 ~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
.|+..|+.++..|+.++..|.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~ 45 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLR 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665554
No 172
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.01 E-value=97 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=12.8
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 038084 135 TIVDEAVKYIK----TLQHTHQTLEKQKFEK 161 (282)
Q Consensus 135 ~iL~~ai~YIk----~Lq~~~~~L~~~~~~l 161 (282)
.||+++.++|. .+-+++++|+++++.|
T Consensus 8 elLqe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 8 ELLQEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 67888877764 4556666777666655
No 173
>PF15392 Joubert: Joubert syndrome-associated
Probab=23.96 E-value=1.8e+02 Score=27.78 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHhhC
Q 038084 96 ESEHEMHILTERERRKKMRNMFSNLHALL 124 (282)
Q Consensus 96 ~~~r~~h~~~ER~RR~~in~~~~~Lr~lv 124 (282)
+.+++...++.|+||++|.+.+..|..+.
T Consensus 54 kERrEIq~WMkRKrkERmaEYl~qlaEkR 82 (329)
T PF15392_consen 54 KERREIQAWMKRKRKERMAEYLKQLAEKR 82 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999988887765
No 174
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=23.68 E-value=2.5e+02 Score=30.22 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=36.3
Q ss_pred ECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 232 CGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 232 ~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
..+-+.|+|.+. ..+|.+.+|+.+|+++++.|...+.+..+..+.+++.
T Consensus 314 ~~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~ 365 (810)
T PRK09466 314 LDDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYT 365 (810)
T ss_pred cCCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEe
Confidence 345678888776 3467899999999999999998876655554555543
No 175
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=22.93 E-value=66 Score=33.86 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=37.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
..++|....|+|+|..|+.+|+ ||.-+.+++.|..++..|.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~ 672 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAA 672 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEE
Confidence 5789999999999999999999 9999999999988877764
No 176
>PRK11898 prephenate dehydratase; Provisional
Probab=22.81 E-value=2.4e+02 Score=26.08 Aligned_cols=36 Identities=11% Similarity=0.227 Sum_probs=29.9
Q ss_pred EEEEEEcCC-CCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPR-KPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~-r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..++ ++|.|.++|..+..+|+++++...-..
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~ 233 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPT 233 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccC
Confidence 345566655 599999999999999999999988764
No 177
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=22.41 E-value=3.1e+02 Score=29.46 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=34.8
Q ss_pred EEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEE
Q 038084 230 NMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMY 277 (282)
Q Consensus 230 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~ 277 (282)
....+-+.|.|... .++|.+.+|+.+|.++|+.|...+.++....+.+
T Consensus 310 t~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf 360 (819)
T PRK09436 310 SNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISF 360 (819)
T ss_pred EEeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEE
Confidence 34456677888764 4789999999999999999987765443333333
No 178
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=22.32 E-value=1.5e+02 Score=29.81 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..+.++|.|.+||.+++.+|+++++...-..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPs 67 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDS 67 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcC
Confidence 345566677899999999999999999999988664
No 179
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=21.77 E-value=1.3e+02 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038084 144 IKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 144 Ik~Lq~~~~~L~~~~~~l~ 162 (282)
|..|++++..|+.+++.|.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq 19 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQ 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 4578888888888888775
No 180
>PRK07431 aspartate kinase; Provisional
Probab=21.72 E-value=3.5e+02 Score=27.56 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=33.4
Q ss_pred EEEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEE
Q 038084 228 VVNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
.+.+..+-+.|.|... ..+|++.+++.+|.+.+++|+..+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 4566667778888875 478999999999999999998777
No 181
>PHA02114 hypothetical protein
Probab=21.56 E-value=1.1e+02 Score=24.32 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=23.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
+.|.-....|.+.+|+.-||+.|++|+..+
T Consensus 87 ldvn~amsr~pwi~v~s~le~~g~~vvatq 116 (127)
T PHA02114 87 LDVNYAMSRAPWIKVISRLEEAGFNVVATQ 116 (127)
T ss_pred EEehhhhccCcHHHHHHHHHhcCceeeehh
Confidence 444445567889999999999999998754
No 182
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=21.45 E-value=3.7e+02 Score=28.90 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=39.1
Q ss_pred EEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 229 VNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 229 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|.+..+-+.|.|... ..+|++.+++.+|.+.|++|+-.+-++.+..+.+.+
T Consensus 390 i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV 443 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVI 443 (819)
T ss_pred EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEE
Confidence 566677788888875 478999999999999999998777655555544443
No 183
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=21.42 E-value=31 Score=32.95 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCCcceeeeeeccccccc
Q 038084 11 DNGHCHIIMACAAQNNLR 28 (282)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (282)
+-.|||+.|| ||||+.
T Consensus 278 ~lKRchv~ih--QHNYAA 293 (329)
T PF01056_consen 278 ILKRCHVSIH--QHNYAA 293 (329)
T ss_dssp ------------------
T ss_pred cceeeeeeec--cccccC
Confidence 3478999999 999988
No 184
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=21.16 E-value=2.2e+02 Score=24.13 Aligned_cols=40 Identities=33% Similarity=0.451 Sum_probs=25.4
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCC-CCCCCCChhhHH
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLP-HLPPKADKSTIV 137 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP-~~~~K~~k~~iL 137 (282)
.|++....||+||---..-|.-||..== .++...|--++|
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~~aD~NeVL 51 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHGNYKLPKHADNNEVL 51 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHH
Confidence 5677778999999666667777887642 332334444444
No 185
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=21.12 E-value=1.2e+02 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=28.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCC--ceEEEEEEEeeCCeEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHN--LDVVSAHVSSDRYRSMYM 278 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lg--LdVv~a~vs~~~~~~~~~ 278 (282)
+-|..+.+||-|..|+++|-.++ ||-+-|-++.. +..+..
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli 113 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLI 113 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEE
Confidence 56777899999999999998774 55555555554 444433
No 186
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.12 E-value=99 Score=23.11 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
+.-|.+.++|++||++|+.+-|.-.+-
T Consensus 13 ~evGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 13 REVGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred chhcHHHHHHHHHHHcCCCEeeecCCC
Confidence 456999999999999999998865443
No 187
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=20.51 E-value=2.9e+02 Score=24.96 Aligned_cols=38 Identities=5% Similarity=0.054 Sum_probs=31.2
Q ss_pred CeEEEEEEcCCCCC--hHHHHHHHHHhCCceEEEEEEEee
Q 038084 234 DDAQISVCSPRKPG--LLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 234 ~~~~I~I~c~~r~g--lL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..+.+.|.|....+ +...+++.|++.++.+.+.++...
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~ 180 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPA 180 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeec
Confidence 35678899987664 578889999999999999999654
No 188
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=20.32 E-value=2.1e+02 Score=23.26 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=25.1
Q ss_pred CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEE
Q 038084 245 KPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYM 278 (282)
Q Consensus 245 r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~ 278 (282)
||-..--+...|+.+|..|..+.|....+.++|.
T Consensus 51 RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A 84 (135)
T PF02577_consen 51 RPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYA 84 (135)
T ss_dssp S--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEE
Confidence 5555455567789999999999999977766664
Done!