Query 038084
Match_columns 282
No_of_seqs 228 out of 1286
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 12:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.1E-17 7.2E-22 124.9 7.4 68 97-164 5-72 (82)
2 1hlo_A Protein (transcription 99.6 1.9E-16 6.6E-21 119.1 7.0 66 97-162 11-77 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 2.6E-16 8.8E-21 119.1 7.2 68 98-165 2-70 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.6 1E-15 3.4E-20 117.2 7.1 68 97-164 5-74 (88)
5 4h10_B Circadian locomoter out 99.6 6.6E-16 2.2E-20 113.2 5.3 61 95-155 5-65 (71)
6 1nlw_A MAD protein, MAX dimeri 99.6 2.5E-15 8.5E-20 113.0 8.3 66 99-164 2-69 (80)
7 1an4_A Protein (upstream stimu 99.6 6.5E-16 2.2E-20 111.6 3.1 56 96-151 3-63 (65)
8 4ati_A MITF, microphthalmia-as 99.6 3.7E-15 1.3E-19 119.9 7.4 63 98-160 27-92 (118)
9 1a0a_A BHLH, protein (phosphat 99.6 9.1E-16 3.1E-20 110.3 3.4 54 98-151 2-61 (63)
10 3u5v_A Protein MAX, transcript 99.5 1.5E-14 5E-19 107.7 4.5 60 96-155 3-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.5 1.1E-14 3.6E-19 107.6 2.5 53 97-149 8-63 (73)
12 2ql2_B Neurod1, neurogenic dif 99.4 1.8E-13 6.3E-18 97.2 5.8 56 97-152 1-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.4 2.1E-13 7.1E-18 99.3 4.9 55 97-151 11-66 (68)
14 2lfh_A DNA-binding protein inh 99.1 2.8E-11 9.6E-16 87.3 1.6 46 104-149 20-67 (68)
15 4f3l_A Mclock, circadian locom 99.0 4.3E-10 1.5E-14 105.4 6.2 54 97-150 11-64 (361)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 3.3E-09 1.1E-13 100.4 5.0 54 97-150 12-68 (387)
17 4aya_A DNA-binding protein inh 98.7 2.2E-08 7.4E-13 77.2 7.1 47 106-152 33-81 (97)
18 4ath_A MITF, microphthalmia-as 98.7 2.9E-08 9.8E-13 74.3 7.4 52 110-161 4-58 (83)
19 1zpv_A ACT domain protein; str 95.9 0.041 1.4E-06 40.3 8.3 45 235-279 5-49 (91)
20 2ko1_A CTR148A, GTP pyrophosph 95.0 0.076 2.6E-06 38.3 7.0 39 235-273 5-43 (88)
21 2nyi_A Unknown protein; protei 92.7 0.31 1.1E-05 41.2 7.4 39 234-272 92-130 (195)
22 1u8s_A Glycine cleavage system 90.6 0.63 2.1E-05 38.9 7.0 38 235-272 93-130 (192)
23 3o1l_A Formyltetrahydrofolate 83.2 3.8 0.00013 37.2 8.2 37 235-271 22-58 (302)
24 2fgc_A Acetolactate synthase, 77.5 5.9 0.0002 33.7 6.9 45 236-280 30-76 (193)
25 2f06_A Conserved hypothetical 72.1 12 0.00041 29.2 7.2 38 236-273 7-44 (144)
26 2f06_A Conserved hypothetical 70.5 15 0.00052 28.6 7.4 43 238-280 75-117 (144)
27 2re1_A Aspartokinase, alpha an 68.4 19 0.00067 29.0 7.9 51 228-280 96-149 (167)
28 2re1_A Aspartokinase, alpha an 66.9 7.8 0.00027 31.5 5.1 41 229-269 19-60 (167)
29 2wt7_A Proto-oncogene protein 66.4 11 0.00038 25.9 5.1 47 106-166 1-47 (63)
30 3he4_B Synzip5; heterodimeric 63.9 12 0.0004 23.6 4.2 27 136-162 4-30 (46)
31 2dtj_A Aspartokinase; protein- 60.6 23 0.00079 28.9 6.9 41 229-269 9-50 (178)
32 2l5g_A GPS2 protein, G protein 59.3 16 0.00054 22.7 4.1 31 131-161 4-34 (38)
33 2rrl_A FLIK, flagellar HOOK-le 56.2 32 0.0011 28.6 6.9 47 225-271 101-153 (169)
34 2oqq_A Transcription factor HY 52.9 5.5 0.00019 25.5 1.3 27 142-168 3-29 (42)
35 1pd7_B MAD1; PAH2, SIN3, eukar 50.5 20 0.00068 20.5 3.3 20 130-149 1-20 (26)
36 1dh3_A Transcription factor CR 49.6 16 0.00053 24.6 3.3 24 142-165 22-45 (55)
37 2dt9_A Aspartokinase; protein- 49.4 16 0.00054 29.5 4.0 40 230-269 11-51 (167)
38 1zme_C Proline utilization tra 48.9 14 0.00049 25.1 3.2 23 141-163 43-65 (70)
39 2dt9_A Aspartokinase; protein- 46.0 56 0.0019 26.1 6.9 50 228-279 88-140 (167)
40 2dtj_A Aspartokinase; protein- 42.7 50 0.0017 26.8 6.2 50 228-279 88-140 (178)
41 3muj_A Transcription factor CO 39.7 43 0.0015 26.8 5.0 37 112-148 95-134 (138)
42 2jee_A YIIU; FTSZ, septum, coi 37.7 40 0.0014 24.6 4.1 28 136-163 14-41 (81)
43 2er8_A Regulatory protein Leu3 37.5 22 0.00076 24.3 2.7 21 141-161 48-68 (72)
44 3s1t_A Aspartokinase; ACT doma 34.4 81 0.0028 25.8 6.2 50 228-279 89-141 (181)
45 4go7_X Aspartokinase; transfer 34.1 46 0.0016 28.1 4.6 37 231-267 31-68 (200)
46 1jnm_A Proto-oncogene C-JUN; B 33.9 17 0.00057 24.8 1.5 25 141-165 21-45 (62)
47 1xkm_B Distinctin chain B; por 33.7 48 0.0017 18.4 3.0 19 134-152 3-21 (26)
48 3s1t_A Aspartokinase; ACT doma 33.1 91 0.0031 25.5 6.3 37 231-267 12-49 (181)
49 3ab4_A Aspartokinase; aspartat 32.9 1.1E+02 0.0036 28.5 7.4 40 229-268 258-298 (421)
50 1gd2_E Transcription factor PA 32.9 38 0.0013 23.9 3.3 21 141-161 28-48 (70)
51 3w03_C DNA repair protein XRCC 32.3 47 0.0016 27.9 4.3 29 135-163 145-173 (184)
52 2dgc_A Protein (GCN4); basic d 31.9 42 0.0014 23.0 3.3 23 141-163 29-51 (63)
53 1t2k_D Cyclic-AMP-dependent tr 30.7 20 0.0007 24.3 1.5 26 141-166 21-46 (61)
54 1ygy_A PGDH, D-3-phosphoglycer 30.5 2.2E+02 0.0075 27.2 9.4 51 230-280 449-501 (529)
55 1hwt_C Protein (heme activator 30.2 21 0.0007 25.0 1.5 21 141-161 57-77 (81)
56 3ab4_A Aspartokinase; aspartat 29.0 1.6E+02 0.0055 27.2 7.9 51 228-280 337-390 (421)
57 2wuj_A Septum site-determining 26.7 77 0.0026 21.1 3.9 28 135-162 27-54 (57)
58 2jqq_A Conserved oligomeric go 26.7 35 0.0012 28.9 2.5 44 110-155 53-96 (204)
59 3k5p_A D-3-phosphoglycerate de 25.8 1E+02 0.0036 28.9 6.0 53 225-277 333-385 (416)
60 2dnr_A Synaptojanin-1; RRM dom 25.5 1.1E+02 0.0036 22.7 4.8 25 247-272 27-51 (91)
61 2qmw_A PDT, prephenate dehydra 25.3 94 0.0032 27.4 5.3 38 234-271 185-225 (267)
62 2qmx_A Prephenate dehydratase; 25.3 1.2E+02 0.0041 26.9 6.0 37 235-271 200-236 (283)
63 1pyi_A Protein (pyrimidine pat 25.2 55 0.0019 23.5 3.2 21 141-161 47-67 (96)
64 2cdq_A Aspartokinase; aspartat 25.1 1.9E+02 0.0064 27.8 7.8 47 231-279 337-386 (510)
65 3mah_A Aspartokinase; aspartat 24.8 50 0.0017 26.2 3.1 39 230-268 13-54 (157)
66 3c1m_A Probable aspartokinase; 23.2 87 0.003 29.7 5.0 51 229-279 312-365 (473)
67 3v86_A De novo design helix; c 23.0 76 0.0026 17.7 2.6 19 143-161 1-19 (27)
68 3q4f_C DNA repair protein XRCC 22.9 90 0.0031 26.2 4.3 28 135-162 154-181 (186)
69 1sc6_A PGDH, D-3-phosphoglycer 22.8 1.8E+02 0.0061 27.0 6.9 44 236-279 332-375 (404)
70 3coq_A Regulatory protein GAL4 22.6 75 0.0026 22.2 3.5 23 141-163 44-66 (89)
71 1p3q_Q VPS9P, vacuolar protein 21.1 99 0.0034 20.7 3.5 24 104-127 3-26 (54)
72 3tvi_A Aspartokinase; structur 21.1 1.8E+02 0.006 27.5 6.6 50 229-280 292-344 (446)
73 1rwu_A Hypothetical UPF0250 pr 21.0 2E+02 0.0068 21.8 5.7 46 235-281 36-84 (109)
74 3mwb_A Prephenate dehydratase; 21.0 1.4E+02 0.0047 27.0 5.5 36 236-271 202-238 (313)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.70 E-value=2.1e-17 Score=124.93 Aligned_cols=68 Identities=24% Similarity=0.402 Sum_probs=63.9
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
.+|..|+.+||+||++||+.|.+|++|||+...|++|++||.+||+||++|+.+++.|+.++..|+..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999977899999999999999999999999999999888643
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=1.9e-16 Score=119.06 Aligned_cols=66 Identities=26% Similarity=0.461 Sum_probs=62.3
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
.+|..|+.+||+||..||..|..|+++||.++ .|++|++||..||+||+.|+++++.|+.+++.|+
T Consensus 11 ~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 11 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999875 6999999999999999999999999999998875
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.64 E-value=2.6e-16 Score=119.11 Aligned_cols=68 Identities=25% Similarity=0.446 Sum_probs=62.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQGA 165 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~~ 165 (282)
+|..|+..||+||..||+.|..|+++||.++ .|++|++||.+||+||+.|+.+++.|+.+++.|+...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999864 7999999999999999999999999999998886543
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=1e-15 Score=117.18 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=61.6
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
.+|..|+..||+||..||+.|..|+++||.++ .|++|++||.+||+||++|+.+.+.|..+++.|...
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~ 74 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999874 699999999999999999999999988877766543
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=6.6e-16 Score=113.24 Aligned_cols=61 Identities=21% Similarity=0.412 Sum_probs=55.3
Q ss_pred CCCccccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 038084 95 GESEHEMHILTERERRKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLE 155 (282)
Q Consensus 95 ~~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~ 155 (282)
+..+|.+|+.+||+||++||..|.+|++|||....|++|++||.+||+||+.||.++.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3457899999999999999999999999999866799999999999999999999876553
No 6
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=2.5e-15 Score=112.97 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 99 HEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 99 r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
|..||..||+||..||+.|..|+++||.++ .|.+|++||.+|++||+.|+++.+.|..+++.|+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999764 689999999999999999999999999999887644
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=6.5e-16 Score=111.63 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=51.1
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 038084 96 ESEHEMHILTERERRKKMRNMFSNLHALLPHLP-----PKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 96 ~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-----~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
..+|..|+.+||+||++||+.|.+|++|||.+. .|++|++||.+||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 347889999999999999999999999999875 27899999999999999999764
No 8
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=3.7e-15 Score=119.91 Aligned_cols=63 Identities=29% Similarity=0.447 Sum_probs=53.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFE 160 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 160 (282)
++.+|+.+||+||++||+.|.+|++|||.+. .|++|++||.+||+||++||.+++.|..+..+
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999873 48899999999999999999999999876543
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=9.1e-16 Score=110.29 Aligned_cols=54 Identities=30% Similarity=0.503 Sum_probs=49.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHL------PPKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~------~~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
+|.+|+.+||+||++||..|.+|++|||.+ ..|.+|++||++||+||+.||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999965 257889999999999999999765
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.49 E-value=1.5e-14 Score=107.66 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=48.6
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHhhCCC-C-CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 038084 96 ESEHEMHILTERERRKKMRNMFSNLHALLPH-L-PPKA-DKSTIVDEAVKYIKTLQHTHQTLE 155 (282)
Q Consensus 96 ~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~-~-~~K~-~k~~iL~~ai~YIk~Lq~~~~~L~ 155 (282)
..+|..|+..||+||..||+.|.+|+.+||. . ..|. +|++||..||+||+.|++++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999994 2 2565 799999999999999999888764
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=107.57 Aligned_cols=53 Identities=36% Similarity=0.505 Sum_probs=49.0
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQH 149 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq~ 149 (282)
.+|..|+.+||+||++||+.|.+|++|||.+. .|+||++||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999753 799999999999999999974
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.42 E-value=1.8e-13 Score=97.24 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=51.2
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTHQ 152 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~~ 152 (282)
++|..||..||+|+..||+.|..||.+||..+ .|++|++||..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999875 699999999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.40 E-value=2.1e-13 Score=99.30 Aligned_cols=55 Identities=25% Similarity=0.394 Sum_probs=51.1
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
.+|..|+..||+|+..||+.|..||.+||..+ .|++|++||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999865 69999999999999999999765
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.07 E-value=2.8e-11 Score=87.29 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHH
Q 038084 104 LTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQH 149 (282)
Q Consensus 104 ~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~ 149 (282)
..||+|+..||+.|..||.+||..+ .|++|++||+.||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4489999999999999999999876 699999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.98 E-value=4.3e-10 Score=105.40 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=43.1
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHT 150 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~ 150 (282)
.+|.+|+.+||+||++||..|.+|++|||....|+||++||+.||+||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 466889999999999999999999999995558999999999999999999854
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.79 E-value=3.3e-09 Score=100.44 Aligned_cols=54 Identities=35% Similarity=0.533 Sum_probs=48.9
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCC---CCCCCChhhHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPH---LPPKADKSTIVDEAVKYIKTLQHT 150 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~---~~~K~~k~~iL~~ai~YIk~Lq~~ 150 (282)
.+|.+|+.+||+||++||..|.+|+.|||. ...|+||++||+.||+|||.|+..
T Consensus 12 ~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 12 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 467999999999999999999999999994 237999999999999999999853
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=77.20 Aligned_cols=47 Identities=28% Similarity=0.455 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 038084 106 ERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTHQ 152 (282)
Q Consensus 106 ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~~ 152 (282)
||.|-..||+.|..||.+||..+ .|++|.++|..||+||..|++.++
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 68888999999999999999875 699999999999999999997553
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.73 E-value=2.9e-08 Score=74.32 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038084 110 RKKMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 110 R~~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l 161 (282)
|..||++|.+|..|||... .|..|.+||..||+||++||+.++.+.++..++
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~ 58 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 58 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999753 589999999999999999999999888766544
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.89 E-value=0.041 Score=40.29 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=38.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.+.|.|.|+.+||+|.+|..+|-++|++|++.+.....+.....|
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i 49 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMA 49 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEE
Confidence 467999999999999999999999999999999988765444333
No 20
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.01 E-value=0.076 Score=38.28 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=35.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRY 273 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~ 273 (282)
.+.|.|.++.++|+|.+|..+|.+.|++|.++++...++
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC
Confidence 456889999999999999999999999999999987655
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=92.67 E-value=0.31 Score=41.19 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=35.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
..+.|.|.|+.++|++..|..+|-++|++|+.+...+.+
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 457899999999999999999999999999999998864
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=90.56 E-value=0.63 Score=38.86 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=34.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
.+.|.|.|+.++|++..|..+|-++|++|..+...+.+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 46689999999999999999999999999999988764
No 23
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=83.23 E-value=3.8 Score=37.18 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=34.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.+.|.|.|+.|+|+...|...|-++|++|+.++-...
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d 58 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSD 58 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEec
Confidence 4679999999999999999999999999999998864
No 24
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=77.50 E-value=5.9 Score=33.74 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR--YRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~--~~~~~~i~ 280 (282)
..|.|..+.+||.|.+|..+|...|++|.+.++.... +....+|.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIv 76 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIM 76 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEE
Confidence 5688899999999999999999999999999997533 44555554
No 25
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=72.11 E-value=12 Score=29.20 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRY 273 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~ 273 (282)
..|.|..+.+||.|.+|..+|.+.|++|....+....+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 35777889999999999999999999998887754433
No 26
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=70.50 E-value=15 Score=28.59 Aligned_cols=43 Identities=14% Similarity=0.246 Sum_probs=31.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 238 ISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 238 I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
|-+..+.+||.+.+|+++|.+.|++|...-.+..+....+.|.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~ 117 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR 117 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence 4455678999999999999999999976554423455555553
No 27
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=68.37 E-value=19 Score=28.98 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=38.0
Q ss_pred EEEEECCeEEEEEEcCC---CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 228 VVNMCGDDAQISVCSPR---KPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~~---r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
.|.+..+-+.|.|.... ++|.+.+++++|.+.|+.|...+ +....+.+.|.
T Consensus 96 ~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~ 149 (167)
T 2re1_A 96 SIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLID 149 (167)
T ss_dssp EEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEE
T ss_pred eEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEe
Confidence 34455666778888754 89999999999999999998854 44555555553
No 28
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=66.88 E-value=7.8 Score=31.45 Aligned_cols=41 Identities=24% Similarity=0.352 Sum_probs=32.5
Q ss_pred EEEECCeEEEEEE-cCCCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 229 VNMCGDDAQISVC-SPRKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 229 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
|....+.+.|.|. -+.++|.+.+|+.+|.++|+.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 3445566778887 4789999999999999999988776543
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.43 E-value=11 Score=25.88 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 038084 106 ERERRKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQGAT 166 (282)
Q Consensus 106 ER~RR~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~~~ 166 (282)
||++|.....+..+.++ =..-.+|+..|+.++..|+.++..|...+.
T Consensus 1 Ekr~rrrerNR~AA~rc--------------R~rKk~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC--------------RNRRRELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp CHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666554 123457788888888888888877765443
No 30
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=63.86 E-value=12 Score=23.57 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 136 IVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 136 iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
.+.+--+||+.|+++..+|+.-++.|+
T Consensus 4 tvkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 356778999999999999988777664
No 31
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=60.56 E-value=23 Score=28.94 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=30.1
Q ss_pred EEEECCeEEEEEE-cCCCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 229 VNMCGDDAQISVC-SPRKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 229 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
|....+.+.|.|. .+.++|.+.+|+..|.+.|+.|.....+
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 4445566777774 4789999999999999999655554433
No 32
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.25 E-value=16 Score=22.73 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038084 131 ADKSTIVDEAVKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 131 ~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l 161 (282)
+.....|.++-+-|..|+.+++.|++++-.|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999998766
No 33
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=56.23 E-value=32 Score=28.57 Aligned_cols=47 Identities=17% Similarity=0.314 Sum_probs=40.2
Q ss_pred CeEEEEEECCeEEEEEEcCCC------CChHHHHHHHHHhCCceEEEEEEEee
Q 038084 225 PNVVVNMCGDDAQISVCSPRK------PGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 225 ~~V~V~i~g~~~~I~I~c~~r------~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
.+|.|++.++.+.|.|.+..- ..-+..+-+.|++.||.+..++|+..
T Consensus 101 l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 101 VHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 588888899999999999874 24677888999999999999999874
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.94 E-value=5.5 Score=25.47 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccc
Q 038084 142 KYIKTLQHTHQTLEKQKFEKVQGATTV 168 (282)
Q Consensus 142 ~YIk~Lq~~~~~L~~~~~~l~~~~~~~ 168 (282)
-|+-.|+.+++.|+....+|.+.++.+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstL 29 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTL 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388889999999988888876655543
No 35
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=50.53 E-value=20 Score=20.48 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCChhhHHHHHHHHHHHHHH
Q 038084 130 KADKSTIVDEAVKYIKTLQH 149 (282)
Q Consensus 130 K~~k~~iL~~ai~YIk~Lq~ 149 (282)
|+....+|-+|.+|+...++
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 34567899999999986654
No 36
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=49.60 E-value=16 Score=24.58 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 038084 142 KYIKTLQHTHQTLEKQKFEKVQGA 165 (282)
Q Consensus 142 ~YIk~Lq~~~~~L~~~~~~l~~~~ 165 (282)
.||..|+.++..|+.++..|....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999888876443
No 37
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=49.40 E-value=16 Score=29.50 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=30.3
Q ss_pred EEECCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEEEE
Q 038084 230 NMCGDDAQISVCS-PRKPGLLTTIFYILEKHNLDVVSAHVS 269 (282)
Q Consensus 230 ~i~g~~~~I~I~c-~~r~glL~~Il~aLe~lgLdVv~a~vs 269 (282)
....+.+.|.|.. +.++|.+.+|+.+|.+.|+.|.....+
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 3445666666654 678999999999999998888776544
No 38
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=48.91 E-value=14 Score=25.08 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
-.||..|+.+++.|+..+..|..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999988887753
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=46.02 E-value=56 Score=26.12 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=37.2
Q ss_pred EEEEECCeEEEEEEcCC---CCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 228 VVNMCGDDAQISVCSPR---KPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~~---r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.|.+..+-+.|.|.... ++|.+.+++++|.+.|++|.-.+ +..-.+.+.|
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vv 140 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRISVII 140 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEEEEEE
Confidence 56666777888888754 89999999999999999995554 3334555544
No 40
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=42.71 E-value=50 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=36.9
Q ss_pred EEEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 228 VVNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.|.+.++-+.|.|... .++|.+.+++++|.+.|++|.-.+ +....+.+.|
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV 140 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLI 140 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEE
Confidence 4566677788888874 478999999999999999997754 3344444443
No 41
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=39.71 E-value=43 Score=26.83 Aligned_cols=37 Identities=19% Similarity=0.430 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCCC---CCCChhhHHHHHHHHHHHHH
Q 038084 112 KMRNMFSNLHALLPHLP---PKADKSTIVDEAVKYIKTLQ 148 (282)
Q Consensus 112 ~in~~~~~Lr~lvP~~~---~K~~k~~iL~~ai~YIk~Lq 148 (282)
-|.=.|..|..++|--+ .++.|-.||..|.++...|-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 46788999999998654 68889999999999988763
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=37.72 E-value=40 Score=24.60 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038084 136 IVDEAVKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 136 iL~~ai~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
=++.||+-|.-||-++++|+.++..|..
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988877643
No 43
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=37.48 E-value=22 Score=24.29 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038084 141 VKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l 161 (282)
-.||..|+++++.|+..+..|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999888765
No 44
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=34.39 E-value=81 Score=25.78 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=36.8
Q ss_pred EEEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 228 VVNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.|.+..+-+.|.|... .++|++.+++++|.+.|++|.-.+. -+-.+.+.|
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist--Sei~Is~vV 141 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLC 141 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEE
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc--CCCEEEEEE
Confidence 4555667777877653 5889999999999999999888772 244455444
No 45
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=34.10 E-value=46 Score=28.09 Aligned_cols=37 Identities=14% Similarity=0.369 Sum_probs=29.6
Q ss_pred EECCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEE
Q 038084 231 MCGDDAQISVCS-PRKPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 231 i~g~~~~I~I~c-~~r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
...+.+.|.|.- +.+||.+.+|+.+|.+.|+.|--..
T Consensus 31 ~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~ 68 (200)
T 4go7_X 31 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 68 (200)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred ccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEe
Confidence 345777787754 7899999999999999988776653
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=33.86 E-value=17 Score=24.83 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQGA 165 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~~~ 165 (282)
-+||..|+.++..|+.++..|...+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888777777765443
No 47
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=33.73 E-value=48 Score=18.37 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 038084 134 STIVDEAVKYIKTLQHTHQ 152 (282)
Q Consensus 134 ~~iL~~ai~YIk~Lq~~~~ 152 (282)
++-|-+|-.|+.+|+.+++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3556788888888887654
No 48
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=33.11 E-value=91 Score=25.46 Aligned_cols=37 Identities=14% Similarity=0.369 Sum_probs=28.4
Q ss_pred EECCeEEEEEEc-CCCCChHHHHHHHHHhCCceEEEEE
Q 038084 231 MCGDDAQISVCS-PRKPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 231 i~g~~~~I~I~c-~~r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
...+.+.|.|.. +.++|.+.+|+.+|.+.|+.|....
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 344556666543 5789999999999999998887664
No 49
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=32.89 E-value=1.1e+02 Score=28.48 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.4
Q ss_pred EEEECCeEEEEEE-cCCCCChHHHHHHHHHhCCceEEEEEE
Q 038084 229 VNMCGDDAQISVC-SPRKPGLLTTIFYILEKHNLDVVSAHV 268 (282)
Q Consensus 229 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~lgLdVv~a~v 268 (282)
|....+.+.|.|. .+.++|.+.+|++.|.++++.|.....
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q 298 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 298 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc
Confidence 4556678888888 578899999999999999999887753
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.86 E-value=38 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038084 141 VKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l 161 (282)
-.||+.|+.++..|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888887655543
No 51
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=32.31 E-value=47 Score=27.91 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038084 135 TIVDEAVKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 135 ~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
.||+-+++-+..|+.+++.|++++++|+.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999864
No 52
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.94 E-value=42 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
..|+..|+.++..|+.++..|..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888777776653
No 53
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.65 E-value=20 Score=24.26 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQGAT 166 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~~~~ 166 (282)
-.|+..|+.+++.|+.++..|...+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777654433
No 54
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=30.49 E-value=2.2e+02 Score=27.21 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=39.7
Q ss_pred EEECCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 230 NMCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 230 ~i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
.+.+....|-+.-+.+||.+.+|...|-++|++|-+.++... ++..+..|.
T Consensus 449 ~~~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~ 501 (529)
T 1ygy_A 449 DLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLR 501 (529)
T ss_dssp EEESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEE
T ss_pred EecCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEE
Confidence 344455667777789999999999999999999999999874 455555443
No 55
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=30.18 E-value=21 Score=25.00 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038084 141 VKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l 161 (282)
-.||..|+++++.|+..+..|
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998777654
No 56
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=28.96 E-value=1.6e+02 Score=27.24 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=36.0
Q ss_pred EEEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 228 VVNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 228 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
.|.+..+-+.|.|... .++|.+.+++++|.+.|++|.-.+ +.+..+.+.|.
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vV~ 390 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIR 390 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEE
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEe
Confidence 3444556666777774 589999999999999999998554 33555555543
No 57
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.74 E-value=77 Score=21.15 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 135 TIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 135 ~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
..|+..++-+..|..+++.|+.++..+.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888887664
No 58
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=26.73 E-value=35 Score=28.95 Aligned_cols=44 Identities=16% Similarity=0.417 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 038084 110 RKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLE 155 (282)
Q Consensus 110 R~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~ 155 (282)
|..++.-...|+.|+-.- =...-+++.+||+|++.|-.-...|+
T Consensus 53 ~~Dl~~F~~QL~qL~~~~--i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDD--ISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHS--CSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888887542 23346899999999999987665554
No 59
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=25.80 E-value=1e+02 Score=28.87 Aligned_cols=53 Identities=15% Similarity=0.372 Sum_probs=39.4
Q ss_pred CeEEEEEECCeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEE
Q 038084 225 PNVVVNMCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMY 277 (282)
Q Consensus 225 ~~V~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~ 277 (282)
|+|..-......-|.+.-...||+|.+|-.+|-++|++|..-...+.++-...
T Consensus 333 p~~~~~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~ 385 (416)
T 3k5p_A 333 PQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYL 385 (416)
T ss_dssp CCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEE
T ss_pred CCcCCCCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEE
Confidence 34444334445567777788999999999999999999998887776654433
No 60
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.49 E-value=1.1e+02 Score=22.70 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=20.9
Q ss_pred ChHHHHHHHHHhCCceEEEEEEEeeC
Q 038084 247 GLLTTIFYILEKHNLDVVSAHVSSDR 272 (282)
Q Consensus 247 glL~~Il~aLe~lgLdVv~a~vs~~~ 272 (282)
.++..|++.|..+| +|+.+.+....
T Consensus 27 ~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 27 ALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp HHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred HHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 48899999999999 89988876643
No 61
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=25.32 E-value=94 Score=27.41 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=32.1
Q ss_pred CeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 234 DDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 234 ~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
+...|-+.. +.++|.|.++|..|...|+++.....-..
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~ 225 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPL 225 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEEC
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeec
Confidence 344566667 78999999999999999999999998764
No 62
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=25.29 E-value=1.2e+02 Score=26.94 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
...|-+..+++||.|.++|..|...||+++....-..
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~ 236 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPS 236 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEEC
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEc
Confidence 3445555678999999999999999999999998765
No 63
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.24 E-value=55 Score=23.48 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 038084 141 VKYIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l 161 (282)
-.||..|+++++.|+..+..+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 359999999999999988765
No 64
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=25.05 E-value=1.9e+02 Score=27.83 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=35.2
Q ss_pred EECCeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 231 MCGDDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 231 i~g~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
...+-+.|.|.. ...+|.+.+|+++|+++|+.|.....+ ...+-++|
T Consensus 337 ~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~ss--e~sis~~v 386 (510)
T 2cdq_A 337 LKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS--EVSISLTL 386 (510)
T ss_dssp EEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE--TTEEEEEE
T ss_pred ccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeC--CCeEEEEE
Confidence 344667888886 458899999999999999999988433 44444444
No 65
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=24.85 E-value=50 Score=26.15 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=29.1
Q ss_pred EEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEE
Q 038084 230 NMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHV 268 (282)
Q Consensus 230 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~v 268 (282)
....+-+.|.|... ..+|.+.+|+++|.++|+.|.....
T Consensus 13 a~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~ 54 (157)
T 3mah_A 13 AAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT 54 (157)
T ss_dssp EEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC
T ss_pred EecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence 33445667777753 4678999999999999998876653
No 66
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=23.20 E-value=87 Score=29.68 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=36.2
Q ss_pred EEEECCeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 229 VNMCGDDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 229 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|....+-+.|.|.. ..++|.+.+|+.+|.++++.|....-.+....+.+++
T Consensus 312 Ia~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~tse~~Is~~V 365 (473)
T 3c1m_A 312 ISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVV 365 (473)
T ss_dssp EEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEE
T ss_pred hhccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecCCCCEEEEEE
Confidence 33445667788885 4467999999999999999998877433334444444
No 67
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.97 E-value=76 Score=17.71 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038084 143 YIKTLQHTHQTLEKQKFEK 161 (282)
Q Consensus 143 YIk~Lq~~~~~L~~~~~~l 161 (282)
|+-+|+.++-+|+-+...|
T Consensus 1 yvyqlkdevgelkgevral 19 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRAL 19 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHH
Confidence 4556666666666555544
No 68
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.94 E-value=90 Score=26.15 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 135 TIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 135 ~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
.++.-+++-|-.|+.++..|++++++|.
T Consensus 154 ELi~~~L~~i~~L~a~N~hLqkENeRL~ 181 (186)
T 3q4f_C 154 ELICYCLDTIAENQAKNEHLQKENERLL 181 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677778999999999999999885
No 69
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=22.77 E-value=1.8e+02 Score=26.98 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=35.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
..|-+.-..+||++.+|-.+|-++|++|....+.+.++..+..|
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vi 375 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVI 375 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEE
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEE
Confidence 34556667899999999999999999999999998666555444
No 70
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.60 E-value=75 Score=22.24 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 038084 141 VKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 141 i~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
-.|+..|+++++.|+..+..+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 36999999999999998887753
No 71
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.14 E-value=99 Score=20.70 Aligned_cols=24 Identities=13% Similarity=0.472 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCC
Q 038084 104 LTERERRKKMRNMFSNLHALLPHL 127 (282)
Q Consensus 104 ~~ER~RR~~in~~~~~Lr~lvP~~ 127 (282)
.++|-+|...++.+.+|+.+.|++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 468889999999999999999996
No 72
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=21.09 E-value=1.8e+02 Score=27.48 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred EEEECCeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 229 VNMCGDDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 229 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
|....+-+.|.|.. +..+|.+.+|+.+|+++++.|.....+ ...+.++|.
T Consensus 292 Ia~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~--~~~is~~V~ 344 (446)
T 3tvi_A 292 IAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG--VDSVSLVIE 344 (446)
T ss_dssp EEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE--TTEEEEEEE
T ss_pred EEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC--CCEEEEEEe
No 73
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=21.05 E-value=2e+02 Score=21.78 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=36.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhC---CceEEEEEEEeeCCeEEEEEEe
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKH---NLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~l---gLdVv~a~vs~~~~~~~~~i~a 281 (282)
.+.|+|.....+++...|.++++.+ ..++ ...-|+.|..+-++|..
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v 84 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITI 84 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEE
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEE
Confidence 4668888888999999999999988 6776 66777778777777654
No 74
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=20.98 E-value=1.4e+02 Score=26.99 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=30.7
Q ss_pred EEEEEEcC-CCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 236 AQISVCSP-RKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 236 ~~I~I~c~-~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
..|-+..+ ++||.|.++|..|...||+++....-..
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~ 238 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPT 238 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEEC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeec
Confidence 44666675 7999999999999999999999988664
Done!