Query 038084
Match_columns 282
No_of_seqs 228 out of 1286
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 12:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038084.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038084hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1am9a_ a.38.1.1 (A:) SREBP-1a 99.7 6.2E-17 4.5E-21 119.9 7.4 67 97-163 5-71 (80)
2 d1nlwa_ a.38.1.1 (A:) Mad prot 99.6 4.1E-16 3E-20 115.1 8.3 66 99-164 2-69 (79)
3 d1nkpb_ a.38.1.1 (B:) Max prot 99.6 4.2E-16 3.1E-20 116.1 7.2 66 98-163 2-68 (83)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 99.6 8.2E-16 6E-20 115.7 7.1 68 97-164 5-74 (88)
5 d1a0aa_ a.38.1.1 (A:) Pho4 B/H 99.6 8.2E-16 6E-20 108.8 4.8 54 98-151 2-61 (63)
6 d1mdya_ a.38.1.1 (A:) Myod B/H 99.6 7.6E-16 5.5E-20 110.6 4.3 56 97-152 11-67 (68)
7 d1an4a_ a.38.1.1 (A:) Usf B/HL 99.5 2.6E-15 1.9E-19 106.8 3.1 56 96-151 3-63 (65)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 99.5 1.2E-14 8.8E-19 102.1 4.6 54 110-163 1-54 (61)
9 d1u8sa1 d.58.18.5 (A:2-87) put 96.3 0.008 5.8E-07 42.8 7.8 47 234-280 4-50 (86)
10 d1zpva1 d.58.18.7 (A:1-83) UPF 96.2 0.013 9.3E-07 41.3 8.3 44 236-279 3-46 (83)
11 d2f06a2 d.58.18.11 (A:1-70) Hy 95.1 0.043 3.1E-06 37.7 7.3 43 237-279 5-47 (70)
12 d2f06a1 d.58.18.11 (A:71-141) 94.6 0.07 5.1E-06 36.5 7.4 45 237-281 1-45 (71)
13 d1u8sa2 d.58.18.5 (A:88-180) p 93.1 0.092 6.7E-06 37.5 6.1 36 235-270 6-41 (93)
14 d1y7pa2 d.58.18.12 (A:2-78) Hy 93.1 0.04 2.9E-06 38.4 3.8 34 237-270 3-36 (77)
15 d2fgca2 d.58.18.6 (A:27-104) A 83.9 2.1 0.00015 29.5 7.2 46 235-280 3-50 (78)
16 d1sc6a3 d.58.18.1 (A:327-410) 80.4 2 0.00015 29.5 6.1 38 236-273 12-49 (84)
17 d1ygya3 d.58.18.1 (A:452-529) 75.8 6.9 0.0005 26.2 7.8 44 236-279 4-49 (78)
18 d1phza1 d.58.18.3 (A:19-115) P 73.0 1.7 0.00012 31.0 4.0 37 235-271 16-52 (97)
19 d2cdqa2 d.58.18.10 (A:329-419) 68.2 11 0.00083 25.9 7.7 40 229-268 7-49 (91)
20 d2pc6a2 d.58.18.6 (A:1-77) Ace 68.1 5.9 0.00043 26.9 5.8 45 236-280 3-49 (77)
21 d2qmwa2 d.58.18.3 (A:185-264) 66.6 5.9 0.00043 26.9 5.6 30 242-271 9-38 (80)
22 d2f1fa1 d.58.18.6 (A:2-77) Ace 66.1 7.5 0.00055 26.3 6.0 44 237-280 3-48 (76)
23 d2hmfa3 d.58.18.10 (A:304-403) 64.4 4.4 0.00032 28.7 4.7 51 229-279 9-62 (100)
24 d2hmfa2 d.58.18.10 (A:404-470) 51.5 16 0.0012 23.5 5.6 37 243-279 12-48 (67)
25 d2clyb1 f.53.1.1 (B:4-123) ATP 31.3 28 0.002 25.3 4.5 29 134-162 91-119 (120)
26 d1vjla_ d.257.1.1 (A:) Hypothe 29.8 37 0.0027 25.4 5.2 36 243-278 53-88 (151)
27 d1p6ta1 d.58.17.1 (A:1-72) Pot 29.7 20 0.0015 22.9 3.2 38 225-264 35-72 (72)
28 d2j0wa2 d.58.18.10 (A:295-385) 28.6 10 0.00076 26.1 1.5 38 230-267 9-49 (91)
29 d1lrza1 a.2.7.4 (A:245-309) Me 28.1 24 0.0018 22.9 3.3 22 142-163 3-24 (65)
30 d1tdja2 d.58.18.2 (A:336-423) 22.6 36 0.0026 23.2 3.5 24 235-258 3-26 (88)
31 d2j0wa3 d.58.18.10 (A:386-449) 20.4 49 0.0036 20.8 3.6 34 244-279 13-46 (64)
No 1
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.66 E-value=6.2e-17 Score=119.94 Aligned_cols=67 Identities=24% Similarity=0.406 Sum_probs=63.0
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
.+|..|+.+||+||++||+.|..|++|||+...|++|++||.+||+||+.|+.+++.|..++..|+.
T Consensus 5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~ 71 (80)
T d1am9a_ 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999998789999999999999999999999999999987754
No 2
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.62 E-value=4.1e-16 Score=115.06 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=60.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 99 HEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 99 r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
|..|+.+||+||++||+.|..|+++||.++ .|++|++||..||+||+.|+.+++.|..+++.|...
T Consensus 2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~L~~~ 69 (79)
T d1nlwa_ 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999864 689999999999999999999999999998877543
No 3
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=4.2e-16 Score=116.07 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=61.3
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
+|..|+.+||+||.+||+.|..|+++||+.+ .|++|++||..||+||+.|+++++.|..+.+.+..
T Consensus 2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~ 68 (83)
T d1nkpb_ 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999765 68999999999999999999999999998887754
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59 E-value=8.2e-16 Score=115.68 Aligned_cols=68 Identities=28% Similarity=0.386 Sum_probs=61.7
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP--PKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQG 164 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~--~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~~ 164 (282)
.+|..|+.+||+||+.||+.|..|+++||+++ .|.+|++||..||+||+.|+++++.|..+++.+...
T Consensus 5 ~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~ 74 (88)
T d1nkpa_ 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999764 589999999999999999999999999988877543
No 5
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.57 E-value=8.2e-16 Score=108.81 Aligned_cols=54 Identities=30% Similarity=0.503 Sum_probs=49.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHhhCCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 038084 98 EHEMHILTERERRKKMRNMFSNLHALLPHL------PPKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 98 ~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~------~~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
+|..|+.+||+||++||+.|..|++|||++ ..|++|++||++||+||++||+++
T Consensus 2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v 61 (63)
T d1a0aa_ 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999952 379999999999999999999764
No 6
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.56 E-value=7.6e-16 Score=110.62 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=51.6
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 038084 97 SEHEMHILTERERRKKMRNMFSNLHALLPHLP-PKADKSTIVDEAVKYIKTLQHTHQ 152 (282)
Q Consensus 97 ~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-~K~~k~~iL~~ai~YIk~Lq~~~~ 152 (282)
.+|..|+..||+||.+||+.|..|++|||.++ .|++|++||..||+||++||+.++
T Consensus 11 ~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~ 67 (68)
T d1mdya_ 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999975 689999999999999999997654
No 7
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.50 E-value=2.6e-15 Score=106.79 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=50.5
Q ss_pred CCccccccHHHHHHHHHHHHHHHHHHhhCCCCC-----CCCChhhHHHHHHHHHHHHHHHH
Q 038084 96 ESEHEMHILTERERRKKMRNMFSNLHALLPHLP-----PKADKSTIVDEAVKYIKTLQHTH 151 (282)
Q Consensus 96 ~~~r~~h~~~ER~RR~~in~~~~~Lr~lvP~~~-----~K~~k~~iL~~ai~YIk~Lq~~~ 151 (282)
..+|..|+.+||+||++||+.|..|++|||.+. .|++|++||..||+||+.||++.
T Consensus 3 ~~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~ 63 (65)
T d1an4a_ 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999763 48999999999999999998754
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.47 E-value=1.2e-14 Score=102.05 Aligned_cols=54 Identities=24% Similarity=0.362 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 038084 110 RKKMRNMFSNLHALLPHLPPKADKSTIVDEAVKYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 110 R~~in~~~~~Lr~lvP~~~~K~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
|++||++|..|+++||++..|++|++||.+||+||+.|+.+++.|+.++..|+.
T Consensus 1 R~~in~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 54 (61)
T d1uklc_ 1 RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKL 54 (61)
T ss_dssp CCCHHHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999998789999999999999999999999999999988753
No 9
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=96.27 E-value=0.008 Score=42.85 Aligned_cols=47 Identities=6% Similarity=0.248 Sum_probs=41.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEE
Q 038084 234 DDAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIH 280 (282)
Q Consensus 234 ~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~ 280 (282)
..+.|.+.|+.|||++..|..+|-++|++|+.++....++...+.+.
T Consensus 4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~ 50 (86)
T d1u8sa1 4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLML 50 (86)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEE
Confidence 35779999999999999999999999999999999998887766654
No 10
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=96.15 E-value=0.013 Score=41.30 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
+.|.|.|+.|||++..|..+|-++|++|+.++-...++..+..+
T Consensus 3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~ 46 (83)
T d1zpva1 3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMA 46 (83)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEE
Confidence 56899999999999999999999999999999888766544443
No 11
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=95.06 E-value=0.043 Score=37.71 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
+|.|..+.+||.|.+|..+|.+.|++|...++....+..+.-|
T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Ri 47 (70)
T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRG 47 (70)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEE
Confidence 5889999999999999999999999999999988776665544
No 12
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=94.57 E-value=0.07 Score=36.52 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=39.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMIHA 281 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i~a 281 (282)
.|.|..+.+||.|.+|+++|.+.|++|....+....+..+..|.+
T Consensus 1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~v 45 (71)
T d2f06a1 1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 45 (71)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEE
Confidence 367888999999999999999999999999988877877766654
No 13
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=93.14 E-value=0.092 Score=37.52 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
.+.|.|.|+.|||++..|...|-++|++|...+..+
T Consensus 6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~ 41 (93)
T d1u8sa2 6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 41 (93)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence 456889999999999999999999999999988765
No 14
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=93.06 E-value=0.04 Score=38.37 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEe
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSS 270 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~ 270 (282)
-|+|.|..|+|+|.+|+.++-+++++|++++...
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~ 36 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL 36 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEE
T ss_pred eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeec
Confidence 3889999999999999999999999999999776
No 15
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=83.94 E-value=2.1 Score=29.45 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=37.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEE
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDR--YRSMYMIH 280 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~--~~~~~~i~ 280 (282)
...|.+....+||+|.+|..++...|+.+.+.++.... +..-.+|.
T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tiv 50 (78)
T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIM 50 (78)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEE
Confidence 35688899999999999999999999999999987743 44444443
No 16
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=80.39 E-value=2 Score=29.49 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEeeCC
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSDRY 273 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~ 273 (282)
..|.|.-..+||+|.+|..+|-+.|+.|.+......++
T Consensus 12 ~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~ 49 (84)
T d1sc6a3 12 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQ 49 (84)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSS
T ss_pred eEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCC
Confidence 34666668899999999999999999999998887654
No 17
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=75.84 E-value=6.9 Score=26.22 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=34.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMI 279 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i 279 (282)
..+-|.-..+||++.+|-.+|-+.|++|....++.. ++..+..|
T Consensus 4 ~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi 49 (78)
T d1ygya3 4 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILL 49 (78)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEE
T ss_pred eEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEE
Confidence 446666788999999999999999999999998763 44343333
No 18
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=73.02 E-value=1.7 Score=31.02 Aligned_cols=37 Identities=8% Similarity=0.269 Sum_probs=31.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
...|-+.+++++|.|.+||.+|.++|+++.+...-..
T Consensus 16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~ 52 (97)
T d1phza1 16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPS 52 (97)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEEC
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeecc
Confidence 3446677788999999999999999999999888653
No 19
>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=68.19 E-value=11 Score=25.89 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=33.1
Q ss_pred EEEECCeEEEEEEcC---CCCChHHHHHHHHHhCCceEEEEEE
Q 038084 229 VNMCGDDAQISVCSP---RKPGLLTTIFYILEKHNLDVVSAHV 268 (282)
Q Consensus 229 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~lgLdVv~a~v 268 (282)
|.+..+-+.|.|... .++|.+.+|+.+|.+.|+.|.-.+.
T Consensus 7 I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~ 49 (91)
T d2cdqa2 7 IVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 49 (91)
T ss_dssp EEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence 345566788888864 5999999999999999999988764
No 20
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=68.13 E-value=5.9 Score=26.92 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=35.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 236 AQISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 236 ~~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
..|.+....+||+|.+|...+-..|+++.+.++... .+..-.+|.
T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtiv 49 (77)
T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLV 49 (77)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEE
T ss_pred EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEE
Confidence 357888899999999999999888888888888763 455445543
No 21
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=66.58 E-value=5.9 Score=26.85 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.9
Q ss_pred cCCCCChHHHHHHHHHhCCceEEEEEEEee
Q 038084 242 SPRKPGLLTTIFYILEKHNLDVVSAHVSSD 271 (282)
Q Consensus 242 c~~r~glL~~Il~aLe~lgLdVv~a~vs~~ 271 (282)
-..+||.|.+++..+.++|+++.+...-..
T Consensus 9 ~~d~pGaL~~vL~~F~~~~INLt~IeSRP~ 38 (80)
T d2qmwa2 9 MHDKPGLLASVLNTFALFNINLSWIESRPL 38 (80)
T ss_dssp SSCCTTHHHHHHHHHHTTTCCEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEEEeeec
Confidence 357899999999999999999999988764
No 22
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=66.10 E-value=7.5 Score=26.28 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEE
Q 038084 237 QISVCSPRKPGLLTTIFYILEKHNLDVVSAHVSSD--RYRSMYMIH 280 (282)
Q Consensus 237 ~I~I~c~~r~glL~~Il~aLe~lgLdVv~a~vs~~--~~~~~~~i~ 280 (282)
.|.+....++|+|.+|..++-..|+.|.+.++... .+..-.+|.
T Consensus 3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tiv 48 (76)
T d2f1fa1 3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQ 48 (76)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEE
Confidence 47788899999999999999999888888888764 344444443
No 23
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=64.38 E-value=4.4 Score=28.69 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=36.5
Q ss_pred EEEECCeEEEEEEc---CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 229 VNMCGDDAQISVCS---PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 229 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
|....+-+.|.|.. +.++|++.+|+.+|.+.|+.|.-.+-++-...+-+++
T Consensus 9 I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V 62 (100)
T d2hmfa3 9 ISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVV 62 (100)
T ss_dssp EEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEE
T ss_pred EEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEE
Confidence 34456677888876 4578999999999999999888766444444444443
No 24
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=51.53 E-value=16 Score=23.55 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=28.3
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
..++|+..+++.+|.+.|++|.-.+-++....+.+.+
T Consensus 12 ~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V 48 (67)
T d2hmfa2 12 RGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVI 48 (67)
T ss_dssp TTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEE
T ss_pred CCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEE
Confidence 4589999999999999999987766555555555444
No 25
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=31.29 E-value=28 Score=25.30 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 038084 134 STIVDEAVKYIKTLQHTHQTLEKQKFEKV 162 (282)
Q Consensus 134 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~l~ 162 (282)
...+.++.+|+...+.++++|+++++.++
T Consensus 91 ~e~~~~~~~~~~~s~~rI~~lekeLe~ik 119 (120)
T d2clyb1 91 KEDVKSCAEFLTQSKTRIQEYEKELEKMR 119 (120)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999998763
No 26
>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga maritima [TaxId: 2336]}
Probab=29.78 E-value=37 Score=25.41 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEE
Q 038084 243 PRKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYM 278 (282)
Q Consensus 243 ~~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~ 278 (282)
+.||...--+...|+.+|..|..+.|+...+.+||.
T Consensus 53 ~~RP~thDLl~~~l~~lg~~v~~V~I~~~~dg~fyA 88 (151)
T d1vjla_ 53 FPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYA 88 (151)
T ss_dssp CSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEEE
T ss_pred CCCCCHHHHHHHHHHHhCCEEEEEEEEEEecCCeEE
Confidence 346665556778889999999999999987777765
No 27
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=29.68 E-value=20 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=27.8
Q ss_pred CeEEEEEECCeEEEEEEcCCCCChHHHHHHHHHhCCceEE
Q 038084 225 PNVVVNMCGDDAQISVCSPRKPGLLTTIFYILEKHNLDVV 264 (282)
Q Consensus 225 ~~V~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~lgLdVv 264 (282)
.+|.|.+..+.+.|.+-. ..--...|.++|++.|.+|+
T Consensus 35 ~~v~v~~~~~~~~v~~d~--~~~~~~~i~~~i~~~Gy~vv 72 (72)
T d1p6ta1 35 TDANVNLATETVNVIYDP--AETGTAAIQEKIEKLGYHVV 72 (72)
T ss_dssp EEEEEEGGGTEEEEEECT--TTSCHHHHHHHHHHHTCEEC
T ss_pred EEEEEEcCCCEEEEEECC--CCCCHHHHHHHHHHhCCccC
Confidence 367777777777777632 22347799999999999985
No 28
>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=28.56 E-value=10 Score=26.08 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=29.1
Q ss_pred EEECCeEEEEEEcCC---CCChHHHHHHHHHhCCceEEEEE
Q 038084 230 NMCGDDAQISVCSPR---KPGLLTTIFYILEKHNLDVVSAH 267 (282)
Q Consensus 230 ~i~g~~~~I~I~c~~---r~glL~~Il~aLe~lgLdVv~a~ 267 (282)
.+..+-+.|.|...+ ++|.+.+|+.+|.+.|+.|.-.+
T Consensus 9 ~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis 49 (91)
T d2j0wa2 9 ALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT 49 (91)
T ss_dssp EEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEE
T ss_pred EEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 344455677777644 57999999999999988887665
No 29
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=28.12 E-value=24 Score=22.89 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 038084 142 KYIKTLQHTHQTLEKQKFEKVQ 163 (282)
Q Consensus 142 ~YIk~Lq~~~~~L~~~~~~l~~ 163 (282)
+||..|+.+...|+.+...+..
T Consensus 3 eYl~~L~~~~~~L~~~i~k~~~ 24 (65)
T d1lrza1 3 EYIKELNEERDILNKDLNKALK 24 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999998876643
No 30
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.59 E-value=36 Score=23.18 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=13.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHh
Q 038084 235 DAQISVCSPRKPGLLTTIFYILEK 258 (282)
Q Consensus 235 ~~~I~I~c~~r~glL~~Il~aLe~ 258 (282)
++.+.|.-|-+||-|.+.+++|-.
T Consensus 3 E~l~~v~iPErpGaf~~F~~~lg~ 26 (88)
T d1tdja2 3 EALLAVTIPEEKGSFLKFCQLLGG 26 (88)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTSS
T ss_pred eEEEEEEcCCCccHHHHHHHhcCc
Confidence 455555555566665555555543
No 31
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=20.42 E-value=49 Score=20.77 Aligned_cols=34 Identities=15% Similarity=0.366 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 038084 244 RKPGLLTTIFYILEKHNLDVVSAHVSSDRYRSMYMI 279 (282)
Q Consensus 244 ~r~glL~~Il~aLe~lgLdVv~a~vs~~~~~~~~~i 279 (282)
.++|+..+++++|.+.++.+++ .++.+..+-+.+
T Consensus 13 ~~~gi~arif~~L~~~nI~~i~--~~~Se~~is~vV 46 (64)
T d2j0wa3 13 KACGVGKEVFGVLEPFNIRMIC--YGASSHNLCFLV 46 (64)
T ss_dssp TSSSHHHHHHSSCTTSCCCEEE--ESSCTTEEEEEE
T ss_pred cCccHHHHHHHHHhhCCCeEEE--EEcCccEEEEEE
Confidence 5899999999999998988875 333444444443
Done!