Query 038085
Match_columns 85
No_of_seqs 62 out of 64
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 12:26:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2onk_C Molybdate/tungstate ABC 13.0 2.8E+02 0.0096 19.1 4.3 45 38-82 58-102 (284)
2 2w82_A ORF18, ARDA; DNA mimic, 12.5 50 0.0017 22.3 0.3 13 11-23 130-142 (165)
3 3d31_C Sulfate/molybdate ABC t 11.5 3.4E+02 0.011 18.8 4.4 44 38-81 68-111 (295)
4 2k21_A Potassium voltage-gated 10.3 1.6E+02 0.0054 20.7 2.2 23 56-81 56-78 (138)
5 3lax_A Phenylacetate-coenzyme 10.1 73 0.0025 19.0 0.4 23 36-58 1-23 (109)
6 1bh9_B TAFII28; histone fold, 10.1 2.1E+02 0.0071 18.0 2.6 16 54-69 36-51 (89)
7 3mp7_B Preprotein translocase 8.1 3.8E+02 0.013 15.8 4.1 32 45-76 25-60 (61)
8 3few_X Colicin S4; cell lysis, 6.8 2.2E+02 0.0074 23.7 1.9 18 55-72 441-458 (505)
9 2jgs_A Circular permutant of a 6.4 84 0.0029 21.8 -0.6 18 37-54 64-82 (130)
10 3ig3_A Plxna3 protein; plexin 4.3 2.2E+02 0.0075 24.3 0.5 15 11-25 442-456 (627)
No 1
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=12.97 E-value=2.8e+02 Score=19.08 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=31.4
Q ss_pred chhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 038085 38 PDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82 (85)
Q Consensus 38 ~~~w~s~~~~d~Ft~~a~aSIsmsFlAF~alAlSsLiSgy~L~~~ 82 (85)
.+++.+-+.++.|-+...-++.+++.+.+.-.+-++.-||-+.+.
T Consensus 58 l~n~~~~~~~~~~~~~l~~Tl~~~~~~~~l~~~lg~~~a~~l~~~ 102 (284)
T 2onk_C 58 FDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK 102 (284)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345666666677877788888888887766666666677766653
No 2
>2w82_A ORF18, ARDA; DNA mimic, replication inhibitor; 2.80A {Enterococcus faecalis}
Probab=12.53 E-value=50 Score=22.33 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=11.2
Q ss_pred hhhhhhhhhhhcc
Q 038085 11 LGEKLKLLFDVAD 23 (85)
Q Consensus 11 ~~ek~~~~fDf~~ 23 (85)
+||.++.||||-.
T Consensus 130 ipe~l~~YfDyea 142 (165)
T 2w82_A 130 VPASLQNYIDYQA 142 (165)
T ss_dssp CCTGGGGGBCHHH
T ss_pred CCHHHHHhcCHHH
Confidence 7999999999853
No 3
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=11.51 E-value=3.4e+02 Score=18.80 Aligned_cols=44 Identities=18% Similarity=0.081 Sum_probs=30.4
Q ss_pred chhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 038085 38 PDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYN 81 (85)
Q Consensus 38 ~~~w~s~~~~d~Ft~~a~aSIsmsFlAF~alAlSsLiSgy~L~~ 81 (85)
.+++.+-+.+..|-+...-++.+++.+.+.-.+-++.-||-+.+
T Consensus 68 l~ny~~~~~~~~~~~~l~nTl~~~~~~~~l~~~lg~~~a~~l~~ 111 (295)
T 3d31_C 68 FSGLVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILAR 111 (295)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566666666777777888888887776655666666776655
No 4
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=10.27 E-value=1.6e+02 Score=20.71 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhc
Q 038085 56 ASVALSFLAFVALGFSSLISGYALYN 81 (85)
Q Consensus 56 aSIsmsFlAF~alAlSsLiSgy~L~~ 81 (85)
.=+.|+|++|..+++ +=||.=++
T Consensus 56 IL~vmgffgff~~GI---mLsYiRSK 78 (138)
T 2k21_A 56 VLMVLGFFGFFTLGI---MLSYIRSK 78 (138)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHhHhh
Confidence 457899999887764 44454333
No 5
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=10.10 E-value=73 Score=18.96 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=18.3
Q ss_pred ccchhhhhhccCCchhhHHHHHH
Q 038085 36 CCPDDWQSNWGEDEFPDMAKASV 58 (85)
Q Consensus 36 ~r~~~w~s~~~~d~Ft~~a~aSI 58 (85)
+|+||.+-.-|.|.|+...-..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl 23 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETIL 23 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHH
Confidence 47888888889999988776544
No 6
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=10.06 E-value=2.1e+02 Score=18.02 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 038085 54 AKASVALSFLAFVALG 69 (85)
Q Consensus 54 a~aSIsmsFlAF~alA 69 (85)
-+..|+|+++|++..+
T Consensus 36 ~~v~i~v~glaKvfVg 51 (89)
T 1bh9_B 36 QNVVIAMSGISKVFVG 51 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3678899999998865
No 7
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.07 E-value=3.8e+02 Score=15.78 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=19.5
Q ss_pred ccCCchhhHHHHH----HHHHHHHHHHHHHHHHhhh
Q 038085 45 WGEDEFPDMAKAS----VALSFLAFVALGFSSLISG 76 (85)
Q Consensus 45 ~~~d~Ft~~a~aS----IsmsFlAF~alAlSsLiSg 76 (85)
=..++|.+.+.+. +.|++++|+.--+..++.|
T Consensus 25 Pd~~Ef~~iak~~~iG~~i~G~iGf~Ikli~~~l~g 60 (61)
T 3mp7_B 25 PNWATYKRAAKITGLGIILIGLIGMLIRIVGILILG 60 (61)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578898877664 3456666655555555543
No 8
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=6.79 E-value=2.2e+02 Score=23.75 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038085 55 KASVALSFLAFVALGFSS 72 (85)
Q Consensus 55 ~aSIsmsFlAF~alAlSs 72 (85)
++++++++++|.+.++|-
T Consensus 441 AaaVALgifs~tl~AfSl 458 (505)
T 3few_X 441 ASAVALGVFSATLGAYAL 458 (505)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357788887777666543
No 9
>2jgs_A Circular permutant of avidin; biotin-binding protein, glycoprotein; HET: BTN; 1.9A {Gallus gallus}
Probab=6.43 E-value=84 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=13.7
Q ss_pred cchhhhh-hccCCchhhHH
Q 038085 37 CPDDWQS-NWGEDEFPDMA 54 (85)
Q Consensus 37 r~~~w~s-~~~~d~Ft~~a 54 (85)
+-|+|++ +.|.|.|+...
T Consensus 64 ~~d~WksT~VG~D~Ftr~~ 82 (130)
T 2jgs_A 64 IGDDWKATRVGIMIFTRLR 82 (130)
T ss_dssp GGGGGGCEEEEEEEEEC--
T ss_pred hhhhhhheeeccceEEecc
Confidence 5689997 79999998754
No 10
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=4.28 E-value=2.2e+02 Score=24.26 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=13.8
Q ss_pred hhhhhhhhhhhcchh
Q 038085 11 LGEKLKLLFDVADID 25 (85)
Q Consensus 11 ~~ek~~~~fDf~~DQ 25 (85)
+|+..+++|||-.||
T Consensus 442 ~P~aIKY~FDfLDeq 456 (627)
T 3ig3_A 442 LPLAIKYMFDFLDEQ 456 (627)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHhhhhH
Confidence 588999999999999
Done!