Query 038085
Match_columns 85
No_of_seqs 62 out of 64
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 12:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038085.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038085hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2onkc1 f.58.1.1 (C:1-252) Mol 21.7 63 0.0046 20.2 4.3 45 38-82 35-79 (252)
2 d1rzhh2 f.23.10.1 (H:11-35) Ph 13.0 76 0.0055 15.3 2.3 16 52-68 1-16 (26)
3 d3d31c1 f.58.1.1 (C:13-260) Su 10.7 1.8E+02 0.013 17.7 4.4 41 41-81 36-76 (248)
4 d1swga_ b.61.1.1 (A:) Streptav 9.5 28 0.002 22.6 -0.2 29 26-58 58-89 (126)
5 d2ebfx3 d.3.1.17 (X:1094-1285) 6.9 33 0.0024 23.1 -0.7 32 18-52 130-166 (192)
6 d2i00a1 d.106.1.4 (A:301-406) 6.9 66 0.0048 18.5 0.7 10 69-78 61-70 (106)
7 d1rutx3 g.39.1.3 (X:83-113) LI 5.4 46 0.0034 16.7 -0.6 20 30-50 7-26 (31)
8 d1zk8a2 a.121.1.1 (A:78-182) T 4.7 86 0.0063 17.3 0.2 15 15-29 11-30 (105)
9 d1nqna_ b.61.1.1 (A:) Avidin { 4.4 48 0.0035 20.6 -1.2 16 37-52 105-121 (122)
10 d1khya_ a.174.1.1 (A:) N-termi 4.2 1.9E+02 0.014 16.1 1.6 14 48-61 1-14 (139)
No 1
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.70 E-value=63 Score=20.18 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=31.6
Q ss_pred chhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 038085 38 PDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 82 (85)
Q Consensus 38 ~~~w~s~~~~d~Ft~~a~aSIsmsFlAF~alAlSsLiSgy~L~~~ 82 (85)
-++|.+.+.++.|-+...-|+.+++++.+.--+-++.-||-+.++
T Consensus 35 ~~n~~~~~~~~~~~~~~~nSl~~~~~~~~i~~i~g~~la~~l~~~ 79 (252)
T d2onkc1 35 FDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK 79 (252)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888889988888899888887655444455556655543
No 2
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.00 E-value=76 Score=15.32 Aligned_cols=16 Identities=31% Similarity=0.438 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 038085 52 DMAKASVALSFLAFVAL 68 (85)
Q Consensus 52 ~~a~aSIsmsFlAF~al 68 (85)
|.|..||++ |-.|.++
T Consensus 1 dlaslaiw~-fw~ffal 16 (26)
T d1rzhh2 1 DLASLAIYS-FWIFLAG 16 (26)
T ss_dssp CHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHH-HHHHHHH
Confidence 356777776 4444443
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=10.72 E-value=1.8e+02 Score=17.73 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=24.8
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 038085 41 WQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYN 81 (85)
Q Consensus 41 w~s~~~~d~Ft~~a~aSIsmsFlAF~alAlSsLiSgy~L~~ 81 (85)
+.+-+.++.+-+..--++.+++++.+.--+-++.-+|-+.+
T Consensus 36 ~~~~~~~~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~ 76 (248)
T d3d31c1 36 LVKAAGNRSVISSIFLSLYAGFLATLLALLLGAPTGYILAR 76 (248)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566676777777777777754444445555555544
No 4
>d1swga_ b.61.1.1 (A:) Streptavidin {Streptomyces avidinii [TaxId: 1895]}
Probab=9.52 E-value=28 Score=22.60 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=16.5
Q ss_pred hhhhhhccccccchhhhh-hccCCchh--hHHHHHH
Q 038085 26 LSSSICIVFGCCPDDWQS-NWGEDEFP--DMAKASV 58 (85)
Q Consensus 26 LLmSAsSaA~~r~~~w~s-~~~~d~Ft--~~a~aSI 58 (85)
||-|.+ .+.|+|.+ +.|.|.|| +..+|||
T Consensus 58 LLrs~V----t~~D~WkSTrVG~D~FTR~kps~a~~ 89 (126)
T d1swga_ 58 LLTSGT----TEANAWKSTLVGHDTFTKVKPSAASG 89 (126)
T ss_dssp EEEECC----CGGGGGGCEEEEEEEEEC--------
T ss_pred eeeccc----cchhhhhheeecccceeeeccccccC
Confidence 555543 46799997 78999995 4555555
No 5
>d2ebfx3 d.3.1.17 (X:1094-1285) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=6.94 E-value=33 Score=23.07 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=19.7
Q ss_pred hhhhcchhhhhhhhccccccchhhh-----hhccCCchhh
Q 038085 18 LFDVADIDLSSSICIVFGCCPDDWQ-----SNWGEDEFPD 52 (85)
Q Consensus 18 ~fDf~~DQLLmSAsSaA~~r~~~w~-----s~~~~d~Ft~ 52 (85)
-..|.||||=-.. -+-++|||- +|...|.|.+
T Consensus 130 hlqfvhdqldtti---lilpvddwaleiaqrnrainpfve 166 (192)
T d2ebfx3 130 HLQFVHDQLDTTI---LILPVDDWALEIAQRNRAINPFVE 166 (192)
T ss_dssp GGGSCCCTTCCSS---EEEEHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhhccceE---EEEeccHHHHHHHHhcccccHHHH
Confidence 4679999921111 123688994 5777777743
No 6
>d2i00a1 d.106.1.4 (A:301-406) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.88 E-value=66 Score=18.54 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=7.3
Q ss_pred HHHHHhhhhh
Q 038085 69 GFSSLISGYA 78 (85)
Q Consensus 69 AlSsLiSgy~ 78 (85)
+|++|+.||+
T Consensus 61 ~Ls~l~~G~~ 70 (106)
T d2i00a1 61 TLTCLVMNYR 70 (106)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHhCCC
Confidence 4778888875
No 7
>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.43 E-value=46 Score=16.67 Aligned_cols=20 Identities=5% Similarity=-0.087 Sum_probs=12.9
Q ss_pred hhccccccchhhhhhccCCch
Q 038085 30 ICIVFGCCPDDWQSNWGEDEF 50 (85)
Q Consensus 30 AsSaA~~r~~~w~s~~~~d~F 50 (85)
.+.-.++.. +|+.+..++.|
T Consensus 7 ~C~~~I~~~-e~VmRA~~~Vy 26 (31)
T d1rutx3 7 ACGQSIPAS-ELVMRAQGNVY 26 (31)
T ss_dssp TTCCEECTT-SEEEEETTEEE
T ss_pred cccCcCChh-Hhheeccccee
Confidence 444556544 48888877766
No 8
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=4.67 E-value=86 Score=17.26 Aligned_cols=15 Identities=0% Similarity=-0.241 Sum_probs=11.9
Q ss_pred hhhhhhhcchh-----hhhh
Q 038085 15 LKLLFDVADID-----LSSS 29 (85)
Q Consensus 15 ~~~~fDf~~DQ-----LLmS 29 (85)
-+.|++||.++ |+++
T Consensus 11 ~~aY~~FA~~~P~~y~lmf~ 30 (105)
T d1zk8a2 11 GEAYVAFVRKHPGLYEATFL 30 (105)
T ss_dssp HHHHHHHHHHCHHHHHHTTC
T ss_pred HHHHHHHHHHChHHHHHHhC
Confidence 46899999998 6664
No 9
>d1nqna_ b.61.1.1 (A:) Avidin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.37 E-value=48 Score=20.60 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.4
Q ss_pred cchhhhh-hccCCchhh
Q 038085 37 CPDDWQS-NWGEDEFPD 52 (85)
Q Consensus 37 r~~~w~s-~~~~d~Ft~ 52 (85)
..|+|.+ +.|.|.||.
T Consensus 105 ~~d~wkst~vGqD~FTr 121 (122)
T d1nqna_ 105 IGDDKKATRVGINIFTR 121 (122)
T ss_dssp GGGGGGCEEEEEEEEEE
T ss_pred cccchhheeeccceEEe
Confidence 4578886 789999985
No 10
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock protein F84.1) {Escherichia coli [TaxId: 562]}
Probab=4.18 E-value=1.9e+02 Score=16.05 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=8.3
Q ss_pred CchhhHHHHHHHHH
Q 038085 48 DEFPDMAKASVALS 61 (85)
Q Consensus 48 d~Ft~~a~aSIsms 61 (85)
|+||+.+.-+|..+
T Consensus 1 ~kfT~~~~~~l~~A 14 (139)
T d1khya_ 1 DRLTNKFQLALADA 14 (139)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHH
Confidence 56666666655543
Done!