Query 038087
Match_columns 252
No_of_seqs 96 out of 98
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 07:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1512 Beta-propeller domains 87.9 0.54 1.2E-05 43.7 3.5 11 109-119 238-248 (271)
2 PF02084 Bindin: Bindin; Inte 78.9 5.1 0.00011 37.3 5.8 22 157-178 108-129 (238)
3 PF02979 NHase_alpha: Nitrile 68.9 6.4 0.00014 35.5 3.8 43 180-222 20-68 (188)
4 PF08671 SinI: Anti-repressor 66.5 5.4 0.00012 26.3 2.1 21 173-194 9-29 (30)
5 PHA00370 III attachment protei 66.2 8.8 0.00019 36.6 4.3 21 183-204 211-231 (297)
6 PRK05255 hypothetical protein; 54.0 33 0.00071 30.3 5.4 69 157-225 27-128 (171)
7 TIGR02877 spore_yhbH sporulati 52.5 22 0.00048 34.9 4.6 18 152-170 113-130 (371)
8 PF02957 TT_ORF2: TT viral ORF 50.8 14 0.00031 29.6 2.6 6 155-160 111-116 (122)
9 PRK05325 hypothetical protein; 49.9 31 0.00068 34.1 5.1 18 152-170 101-118 (401)
10 TIGR03793 TOMM_pelo TOMM prope 48.7 12 0.00026 28.9 1.7 17 203-219 10-28 (77)
11 KOG3915 Transcription regulato 47.4 17 0.00037 37.4 3.0 8 77-84 56-63 (641)
12 PTZ00146 fibrillarin; Provisio 46.0 25 0.00054 33.2 3.7 20 159-178 107-126 (293)
13 COG1174 OpuBB ABC-type proline 42.5 38 0.00083 31.2 4.2 37 158-194 105-141 (221)
14 COG3028 Uncharacterized protei 41.4 35 0.00076 30.9 3.7 51 169-219 59-132 (187)
15 PF04285 DUF444: Protein of un 41.3 47 0.001 33.0 4.9 15 152-166 117-131 (421)
16 cd00086 homeodomain Homeodomai 41.1 83 0.0018 20.8 4.8 39 155-193 11-50 (59)
17 PF12244 DUF3606: Protein of u 40.3 53 0.0011 23.8 3.9 34 159-192 23-56 (57)
18 PRK08558 adenine phosphoribosy 38.5 71 0.0015 28.8 5.3 42 152-198 10-51 (238)
19 TIGR03795 chp_BMA0021 conserve 38.4 22 0.00048 29.7 1.9 21 199-219 17-39 (114)
20 KOG4567 GTPase-activating prot 38.1 25 0.00054 34.6 2.5 41 198-243 283-328 (370)
21 PRK07772 single-stranded DNA-b 36.3 44 0.00095 29.6 3.5 13 32-44 53-66 (186)
22 TIGR00625 tfb2 Transcription f 36.0 40 0.00086 33.9 3.5 68 157-225 313-400 (448)
23 TIGR01323 nitrile_alph nitrile 35.0 74 0.0016 28.9 4.7 44 180-223 13-63 (185)
24 PF04751 DUF615: Protein of un 34.9 89 0.0019 27.0 5.1 39 153-191 12-62 (157)
25 cd07321 Extradiol_Dioxygenase_ 29.3 38 0.00082 25.8 1.7 25 200-224 6-33 (77)
26 PRK11511 DNA-binding transcrip 28.9 3E+02 0.0064 21.9 8.3 79 153-232 9-88 (127)
27 PF15059 Speriolin_C: Sperioli 27.5 29 0.00064 30.3 1.0 65 165-229 28-117 (146)
28 KOG2911 Uncharacterized conser 27.4 46 0.001 33.6 2.4 87 151-239 59-160 (439)
29 TIGR03003 ectoine_ehuD ectoine 26.6 3.5E+02 0.0076 22.7 7.3 31 164-194 107-137 (212)
30 PF00046 Homeobox: Homeobox do 26.5 2.1E+02 0.0045 19.2 5.0 36 157-192 13-49 (57)
31 PRK05325 hypothetical protein; 26.0 69 0.0015 31.7 3.3 21 149-169 143-163 (401)
32 PF07631 PSD4: Protein of unkn 25.5 1E+02 0.0022 25.5 3.8 15 168-182 17-32 (128)
33 PF14407 Frankia_peptide: Ribo 25.2 34 0.00073 26.1 0.8 13 208-220 13-25 (61)
34 PF10078 DUF2316: Uncharacteri 25.2 76 0.0016 25.5 2.8 33 170-202 23-59 (89)
35 PRK10219 DNA-binding transcrip 25.0 3E+02 0.0066 20.7 8.0 77 155-233 7-85 (107)
36 KOG3074 Transcriptional regula 24.5 48 0.001 31.4 1.8 15 148-162 45-59 (263)
37 KOG2003 TPR repeat-containing 23.7 72 0.0016 33.5 3.0 33 102-134 734-768 (840)
38 COG3737 Uncharacterized conser 23.1 52 0.0011 28.3 1.6 35 154-188 59-103 (127)
39 PF05225 HTH_psq: helix-turn-h 22.8 92 0.002 21.4 2.6 22 172-193 18-39 (45)
40 PF06304 DUF1048: Protein of u 22.7 4.3E+02 0.0092 21.6 6.8 75 159-241 10-87 (103)
41 PRK15069 histidine/lysine/argi 22.7 3.7E+02 0.008 23.8 6.9 32 164-195 123-154 (234)
42 TIGR00718 sda_alpha L-serine d 22.5 57 0.0012 31.1 1.9 31 150-181 243-273 (294)
43 PRK15135 histidine/lysine/argi 22.0 5E+02 0.011 22.1 7.5 36 159-194 108-144 (228)
44 PF01323 DSBA: DSBA-like thior 21.8 2E+02 0.0043 23.1 4.7 37 156-192 107-145 (193)
45 PRK09685 DNA-binding transcrip 21.6 5.5E+02 0.012 22.4 8.5 80 156-237 200-283 (302)
46 KOG3074 Transcriptional regula 21.1 66 0.0014 30.5 2.0 7 172-178 93-99 (263)
47 PF05603 DUF775: Protein of un 20.7 2.1E+02 0.0045 25.4 5.0 48 171-221 147-202 (202)
48 PF10653 Phage-A118_gp45: Prot 20.6 62 0.0013 24.5 1.4 29 209-240 20-48 (62)
49 PF10415 FumaraseC_C: Fumarase 20.5 2.1E+02 0.0046 20.6 4.2 36 155-194 14-50 (55)
50 PF10961 DUF2763: Protein of u 20.1 1.4E+02 0.003 23.8 3.4 27 111-137 59-85 (91)
No 1
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=87.93 E-value=0.54 Score=43.69 Aligned_cols=11 Identities=36% Similarity=0.779 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q 038087 109 DGNGGNGRFNN 119 (252)
Q Consensus 109 ~g~gg~g~~~~ 119 (252)
+|+|++|+++.
T Consensus 238 ~g~g~~g~~gg 248 (271)
T COG1512 238 SGSGGSGGSGG 248 (271)
T ss_pred CCCCCCCCCCC
Confidence 44444444433
No 2
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=78.91 E-value=5.1 Score=37.25 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHH
Q 038087 157 EVMKEVEARGASLPSDMFEAAK 178 (252)
Q Consensus 157 aVL~Ea~r~~~sLPaDL~~A~e 178 (252)
.|.+-..+|..+||-||-+-++
T Consensus 108 ~ikavLgaTKiDLPVDINDPYD 129 (238)
T PF02084_consen 108 DIKAVLGATKIDLPVDINDPYD 129 (238)
T ss_pred HHHHHhcccccccccccCChhh
Confidence 3445578899999999988888
No 3
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=68.93 E-value=6.4 Score=35.47 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=29.4
Q ss_pred cCCCHHHHHHHHhhcCC---Cc-hhHHHHHHH--HHhhhhhhcCcchhh
Q 038087 180 VGIRKLLLLRYFDLQGS---SW-PLGFLMKSW--AMLRNRMLADPSFLF 222 (252)
Q Consensus 180 gGIssa~L~RFl~Lqas---P~-~lr~L~Rsf--pgfr~RlLADPsFLf 222 (252)
+-|+++.+.++++...+ |- -.+.+-|+| |.|+.||||||.=..
T Consensus 20 g~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~aA~ 68 (188)
T PF02979_consen 20 GLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPTAAI 68 (188)
T ss_dssp TSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHHHHH
Confidence 33899888888776553 32 234556666 799999999997443
No 4
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=66.50 E-value=5.4 Score=26.26 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=15.4
Q ss_pred HHHHHHHcCCCHHHHHHHHhhc
Q 038087 173 MFEAAKSVGIRKLLLLRYFDLQ 194 (252)
Q Consensus 173 L~~A~e~gGIssa~L~RFl~Lq 194 (252)
|.+|.+ +||+.+.+.+||..+
T Consensus 9 i~eA~~-~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKEAKE-SGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHH-TT--HHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHhC
Confidence 456666 999999999999875
No 5
>PHA00370 III attachment protein
Probab=66.18 E-value=8.8 Score=36.58 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=12.1
Q ss_pred CHHHHHHHHhhcCCCchhHHHH
Q 038087 183 RKLLLLRYFDLQGSSWPLGFLM 204 (252)
Q Consensus 183 ssa~L~RFl~LqasP~~lr~L~ 204 (252)
+.++|...=+=+.+|| +.+|.
T Consensus 211 ~~s~md~lg~g~gS~~-~~~l~ 231 (297)
T PHA00370 211 SNSEMDQLGEGDGSPL-ESFLN 231 (297)
T ss_pred chhhhhhhcccCCcHH-HHhhc
Confidence 3455665555566777 46654
No 6
>PRK05255 hypothetical protein; Provisional
Probab=54.02 E-value=33 Score=30.25 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCC----------cHHHHHHHHHcC-CC-HHHHHHH-------------------HhhcCCCc-hhHHHH
Q 038087 157 EVMKEVEARGASL----------PSDMFEAAKSVG-IR-KLLLLRY-------------------FDLQGSSW-PLGFLM 204 (252)
Q Consensus 157 aVL~Ea~r~~~sL----------PaDL~~A~e~gG-Is-sa~L~RF-------------------l~LqasP~-~lr~L~ 204 (252)
.-|+.++..+..| |.+|++|+.... |+ -....|- |+....+. --....
T Consensus 27 ~alq~LG~~L~~Ls~~ql~~lpL~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~ 106 (171)
T PRK05255 27 EALQDLGEELVELSKDQLAKLPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARF 106 (171)
T ss_pred HHHHHHHHHHHhCCHHHHhcCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHH
Confidence 3455566665554 677888887665 63 3333333 33222221 011122
Q ss_pred HHHHHhhhhhhc-Ccchhhhhh
Q 038087 205 KSWAMLRNRMLA-DPSFLFKIG 225 (252)
Q Consensus 205 Rsfpgfr~RlLA-DPsFLfKl~ 225 (252)
+.+-.||+||++ |+.-+..+.
T Consensus 107 h~lE~wRdrLi~~~d~al~e~~ 128 (171)
T PRK05255 107 HKLERWRDRLLAEGDDALTEFL 128 (171)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 334499999999 565544433
No 7
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=52.47 E-value=22 Score=34.87 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.5
Q ss_pred CcCHHHHHHHHHHhccCCc
Q 038087 152 IMKFEEVMKEVEARGASLP 170 (252)
Q Consensus 152 ~l~~eaVL~Ea~r~~~sLP 170 (252)
-++.||+++..+.-++ ||
T Consensus 113 e~s~eE~~~~lfEdLe-LP 130 (371)
T TIGR02877 113 EVTLEELFELLFEDLE-LP 130 (371)
T ss_pred EecHHHHHHHHHhhcc-CC
Confidence 4789999988877653 55
No 8
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=50.81 E-value=14 Score=29.59 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.4
Q ss_pred HHHHHH
Q 038087 155 FEEVMK 160 (252)
Q Consensus 155 ~eaVL~ 160 (252)
+|++++
T Consensus 111 ld~L~a 116 (122)
T PF02957_consen 111 LDELFA 116 (122)
T ss_pred HHHHhh
Confidence 344433
No 9
>PRK05325 hypothetical protein; Provisional
Probab=49.88 E-value=31 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=13.2
Q ss_pred CcCHHHHHHHHHHhccCCc
Q 038087 152 IMKFEEVMKEVEARGASLP 170 (252)
Q Consensus 152 ~l~~eaVL~Ea~r~~~sLP 170 (252)
-++.||++...+..++ ||
T Consensus 101 els~eE~~~~lfEdLe-LP 118 (401)
T PRK05325 101 EISLEELLDLLFEDLE-LP 118 (401)
T ss_pred EecHHHHHHHHHhhcC-CC
Confidence 4789999888876653 54
No 10
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=48.72 E-value=12 Score=28.93 Aligned_cols=17 Identities=24% Similarity=0.823 Sum_probs=13.6
Q ss_pred HHHHH--HHhhhhhhcCcc
Q 038087 203 LMKSW--AMLRNRMLADPS 219 (252)
Q Consensus 203 L~Rsf--pgfr~RlLADPs 219 (252)
+.|+| |.||.|||+||.
T Consensus 10 varAw~Dp~Fr~~Ll~DPr 28 (77)
T TIGR03793 10 IAKAWEDEAFKQALLTNPK 28 (77)
T ss_pred HHHHHcCHHHHHHHHHCHH
Confidence 34445 799999999997
No 11
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=47.45 E-value=17 Score=37.43 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=3.6
Q ss_pred ccceeeee
Q 038087 77 VASSVERK 84 (252)
Q Consensus 77 ~~~t~~~k 84 (252)
++++.+..
T Consensus 56 aaa~~~~~ 63 (641)
T KOG3915|consen 56 AAATVTST 63 (641)
T ss_pred hhhheecc
Confidence 34454443
No 12
>PTZ00146 fibrillarin; Provisional
Probab=46.04 E-value=25 Score=33.18 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=8.9
Q ss_pred HHHHHHhccCCcHHHHHHHH
Q 038087 159 MKEVEARGASLPSDMFEAAK 178 (252)
Q Consensus 159 L~Ea~r~~~sLPaDL~~A~e 178 (252)
.+.|--..+.|-|-+...++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~ 126 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA 126 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc
Confidence 34454444444444433333
No 13
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=42.45 E-value=38 Score=31.18 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=32.8
Q ss_pred HHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhc
Q 038087 158 VMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQ 194 (252)
Q Consensus 158 VL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~Lq 194 (252)
+++-...-..++|+.+.||++.+|+++-|..+..++-
T Consensus 105 IvrNT~~GL~~V~~~v~EAa~gmGMT~~Q~L~~VelP 141 (221)
T COG1174 105 IVRNTYTGLASVPPSVIEAARGMGMTRWQRLLKVELP 141 (221)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCCHHHHHHHhhcc
Confidence 4566777889999999999999999999999999984
No 14
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.41 E-value=35 Score=30.89 Aligned_cols=51 Identities=25% Similarity=0.344 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHcC-CCHH-HHHHHHhhcCC------Cch--------------hHHHHHHHHHhhhhhhcC-cc
Q 038087 169 LPSDMFEAAKSVG-IRKL-LLLRYFDLQGS------SWP--------------LGFLMKSWAMLRNRMLAD-PS 219 (252)
Q Consensus 169 LPaDL~~A~e~gG-Issa-~L~RFl~Lqas------P~~--------------lr~L~Rsfpgfr~RlLAD-Ps 219 (252)
||.||++|++... |.+. ...|-+.+=+. +-+ --.+.+++--||+||+|+ +.
T Consensus 59 L~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~~~~~q~~a~lHklE~~RdrLia~GD~ 132 (187)
T COG3028 59 LDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNRHNQQVALLHKLEQLRDRLIAEGDG 132 (187)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCch
Confidence 3688999998766 7776 33333322110 001 112334445899999999 54
No 15
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=41.32 E-value=47 Score=33.03 Aligned_cols=15 Identities=13% Similarity=-0.042 Sum_probs=10.2
Q ss_pred CcCHHHHHHHHHHhc
Q 038087 152 IMKFEEVMKEVEARG 166 (252)
Q Consensus 152 ~l~~eaVL~Ea~r~~ 166 (252)
-++.+|++...+.-+
T Consensus 117 els~eE~~~llfEdL 131 (421)
T PF04285_consen 117 ELSREEFLDLLFEDL 131 (421)
T ss_pred EEEHHHHHHHhHHHh
Confidence 467888877766544
No 16
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=41.13 E-value=83 Score=20.80 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhccCCc-HHHHHHHHHcCCCHHHHHHHHhh
Q 038087 155 FEEVMKEVEARGASLP-SDMFEAAKSVGIRKLLLLRYFDL 193 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLP-aDL~~A~e~gGIssa~L~RFl~L 193 (252)
.-++|.+|+..--..+ .++.+-++..|++..++..||.-
T Consensus 11 ~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 11 QLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3567888888855443 67888888899999999999864
No 17
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=40.30 E-value=53 Score=23.79 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.1
Q ss_pred HHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHh
Q 038087 159 MKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFD 192 (252)
Q Consensus 159 L~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~ 192 (252)
++-|.++.--=|+.|++|++..|-+.+.+.+||.
T Consensus 23 v~ywa~~~gvt~~~L~~AV~~vG~~~~~V~~~L~ 56 (57)
T PF12244_consen 23 VRYWAKRFGVTEEQLREAVRAVGNSRAAVRAYLG 56 (57)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHCcCHHHHHHHHc
Confidence 4678888888899999999999999999999884
No 18
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=38.46 E-value=71 Score=28.76 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=31.8
Q ss_pred CcCHHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 038087 152 IMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSW 198 (252)
Q Consensus 152 ~l~~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~ 198 (252)
.++.-++|+...++. ...+-.+..||+..+|.||.....-|.
T Consensus 10 ~~~~v~~lr~lk~~~-----ty~el~~~~g~p~~~l~RYv~g~~~P~ 51 (238)
T PRK08558 10 QLRAVRVLRSLKKTY-----TYEELSSITGLPESVLNRYVNGHVLPS 51 (238)
T ss_pred HHHHHHHHHHHhccc-----CHHHHHHHHCCCHHHHHHHHcCCcCCC
Confidence 455566777776664 455666778899999999999988883
No 19
>TIGR03795 chp_BMA0021 conserved hypothetical protein, BMA_0021 family. Members of this protein family are found sparsely, mostly in members of the genus Burkholderia. Members often occur as tandem homologous genes, such as BMA_0021 and BMA_0022 in Burkholderia mallei ATCC 23344. The genes regularly are encoded near the so-called docking protein of TOMM (thiazole/oxazole-modified microcins) biosynthetic clusters, suggesting a role in bacteriocin biosynthesis. The function is unknown.
Probab=38.35 E-value=22 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=18.2
Q ss_pred hhHHHHHHH--HHhhhhhhcCcc
Q 038087 199 PLGFLMKSW--AMLRNRMLADPS 219 (252)
Q Consensus 199 ~lr~L~Rsf--pgfr~RlLADPs 219 (252)
.+|.+-+++ |.||+|||+||.
T Consensus 17 ~lraIA~AW~DpaFr~eLl~DPk 39 (114)
T TIGR03795 17 YLRAIALAWHSPEFKDELLADPV 39 (114)
T ss_pred HHHHHHHHhCCHHHHHHHHHCHH
Confidence 478888888 699999999997
No 20
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.08 E-value=25 Score=34.59 Aligned_cols=41 Identities=27% Similarity=0.588 Sum_probs=32.6
Q ss_pred chhHHHHHHHH-----HhhhhhhcCcchhhhhhhhhhhhhhhhhHHHHHhh
Q 038087 198 WPLGFLMKSWA-----MLRNRMLADPSFLFKIGTEIVIDSCCATLAEVQKR 243 (252)
Q Consensus 198 ~~lr~L~Rsfp-----gfr~RlLADPsFLfKl~~E~vI~i~~~~~aE~~~R 243 (252)
|++=.|++-|| -+=++|+|||.= +|.++.+||+.+...+.|
T Consensus 283 WitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~ 328 (370)
T KOG4567|consen 283 WITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRER 328 (370)
T ss_pred HHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHH
Confidence 66666677776 567999999985 788899999999887665
No 21
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=36.34 E-value=44 Score=29.61 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=7.6
Q ss_pred ceEE-Eeeecccch
Q 038087 32 VFCK-VRFKKFVKE 44 (252)
Q Consensus 32 ~~~~-~~f~~~~~~ 44 (252)
.+++ ..|+++|+.
T Consensus 53 ~fi~V~~Wg~~Ae~ 66 (186)
T PRK07772 53 LFLRCSIWRQAAEN 66 (186)
T ss_pred eEEEEEEecHHHHH
Confidence 3444 667876544
No 22
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.02 E-value=40 Score=33.87 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=51.3
Q ss_pred HHHHHHHHhccCCc---------HHHHHHHHHcCCCHHHHHHHHhhcCCCchhH--------H---HHHHHHHhhhhhhc
Q 038087 157 EVMKEVEARGASLP---------SDMFEAAKSVGIRKLLLLRYFDLQGSSWPLG--------F---LMKSWAMLRNRMLA 216 (252)
Q Consensus 157 aVL~Ea~r~~~sLP---------aDL~~A~e~gGIssa~L~RFl~LqasP~~lr--------~---L~Rsfpgfr~RlLA 216 (252)
+||+.-.+-...+| .-+++|++ .||+..|+.+||.-.++|...+ - =+|.|.-=|+|+-.
T Consensus 313 ~il~lF~~~~~r~pnlvvg~iTr~Sv~~A~~-~GITa~qIi~fl~~~ahp~~~~~~~~~lP~tv~dQi~lWe~e~~R~~~ 391 (448)
T TIGR00625 313 ALIALFSELLARFPNMVVGQITRESIRRALA-NGITAQQIIHYLRTHAHPQMRKEQTPVLPPTIVDQIRLWELERDRLRF 391 (448)
T ss_pred HHHHHHHHHHhcCCceEEEEecHHHHHHHHH-cCCCHHHHHHHHHhcCChhhhccCCCCCChHHHHHHHHHHHHhcceEe
Confidence 67776666666666 46789999 8899999999999999887421 1 23444566899999
Q ss_pred Ccchhhhhh
Q 038087 217 DPSFLFKIG 225 (252)
Q Consensus 217 DPsFLfKl~ 225 (252)
.|.||||=.
T Consensus 392 ~~~~l~~~f 400 (448)
T TIGR00625 392 TEGVLYNDF 400 (448)
T ss_pred ecceeeeec
Confidence 999988743
No 23
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=35.00 E-value=74 Score=28.87 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=30.3
Q ss_pred cC-CCHHHHHHHHhhcCC---C-chhHHHHHHH--HHhhhhhhcCcchhhh
Q 038087 180 VG-IRKLLLLRYFDLQGS---S-WPLGFLMKSW--AMLRNRMLADPSFLFK 223 (252)
Q Consensus 180 gG-Issa~L~RFl~Lqas---P-~~lr~L~Rsf--pgfr~RlLADPsFLfK 223 (252)
-| |+++.+.+.++.... | .=.+.+-|+| |.||.|||+|..=-.+
T Consensus 13 KGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aa~~ 63 (185)
T TIGR01323 13 KGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVDPEFRALLLKDATAACA 63 (185)
T ss_pred cCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcCHHHHHHHHhChHHHHH
Confidence 44 788888777765443 4 2235566667 8999999999874443
No 24
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=34.89 E-value=89 Score=26.97 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHhccCC----------cHHHHHHHHHcC-C-CHHHHHHHH
Q 038087 153 MKFEEVMKEVEARGASL----------PSDMFEAAKSVG-I-RKLLLLRYF 191 (252)
Q Consensus 153 l~~eaVL~Ea~r~~~sL----------PaDL~~A~e~gG-I-ssa~L~RFl 191 (252)
++--.-++.+++.+..| |.+|.+|+.... | +-.-..|-+
T Consensus 12 KRe~~~lq~Lg~~L~~L~~~ql~~lpL~e~l~~Ai~~a~ri~~~~arrRQ~ 62 (157)
T PF04751_consen 12 KREMHALQDLGEELVELSPKQLAKLPLPEELRDAIMEARRITSHEARRRQL 62 (157)
T ss_dssp ----HHHHHHHHHHTTS-HHHHTTS---HHHHHHHHHGGG--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 33344456666666655 667888887666 6 444444443
No 25
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=29.25 E-value=38 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=16.6
Q ss_pred hHHHHHHH--HHhhhhhhcCcc-hhhhh
Q 038087 200 LGFLMKSW--AMLRNRMLADPS-FLFKI 224 (252)
Q Consensus 200 lr~L~Rsf--pgfr~RlLADPs-FLfKl 224 (252)
.+++++++ |.+|+|.++||. ++-+-
T Consensus 6 ~~~~~~~~~~~~~re~f~~dp~a~~~~~ 33 (77)
T cd07321 6 EKLLEQLLVKPEVKERFKADPEAVLAEY 33 (77)
T ss_pred HHHHHHHhcCHHHHHHHHhCHHHHHHHc
Confidence 44555544 688899999987 55443
No 26
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=28.93 E-value=3e+02 Score=21.90 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=48.4
Q ss_pred cCHHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhhhcCcchhhhhhhhhhhh
Q 038087 153 MKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMK-SWAMLRNRMLADPSFLFKIGTEIVID 231 (252)
Q Consensus 153 l~~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~R-sfpgfr~RlLADPsFLfKl~~E~vI~ 231 (252)
..+.+|++-....... |..+.+.++..|+++..|.|.|.-...-++..|+.+ ++---...|+.-..=+.-++.+++-.
T Consensus 9 ~~i~~~~~~I~~~~~~-~~sl~~lA~~~g~S~~~l~r~Fk~~~G~s~~~~l~~~Rl~~A~~~L~~t~~~i~eIA~~~Gf~ 87 (127)
T PRK11511 9 ITIHSILDWIEDNLES-PLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFE 87 (127)
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC
Confidence 4466777666666544 677888888899999999999987755555566533 12223334443222245555555544
Q ss_pred h
Q 038087 232 S 232 (252)
Q Consensus 232 i 232 (252)
-
T Consensus 88 s 88 (127)
T PRK11511 88 S 88 (127)
T ss_pred C
Confidence 3
No 27
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=27.47 E-value=29 Score=30.32 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=45.6
Q ss_pred hccCCcHHHHHHHH-------HcCCCHHHHHHHHhhcC-----------CCchhHHHHHHHHHhhhhh------hcC-cc
Q 038087 165 RGASLPSDMFEAAK-------SVGIRKLLLLRYFDLQG-----------SSWPLGFLMKSWAMLRNRM------LAD-PS 219 (252)
Q Consensus 165 ~~~sLPaDL~~A~e-------~gGIssa~L~RFl~Lqa-----------sP~~lr~L~Rsfpgfr~Rl------LAD-Ps 219 (252)
|....|.-+.|+-- ..+-+....+||.++.+ +|.+.-+|+.+|.-+|+|. .-. |.
T Consensus 28 t~sNipeKi~Q~s~~p~~~~~De~~r~~L~~ry~~im~rL~~lGY~~~~HP~lsE~lVN~yGILr~rp~l~a~~~~~yp~ 107 (146)
T PF15059_consen 28 TVSNIPEKIIQASTNPLDGKVDEEKRQTLTQRYVSIMNRLQKLGYNRRVHPGLSEFLVNTYGILRERPELAASEGGSYPD 107 (146)
T ss_pred cccccHHHHHhhccCccccccCHHHHHHHHHHHHHHHHHHHHcCCCCccCchHHHHHHHHccccccCcccccCcCcCCHH
Confidence 44555666666543 23355677788888765 4788899999998777764 112 99
Q ss_pred hhhhhhhhhh
Q 038087 220 FLFKIGTEIV 229 (252)
Q Consensus 220 FLfKl~~E~v 229 (252)
||.|+.++.+
T Consensus 108 ~L~~~v~~~v 117 (146)
T PF15059_consen 108 FLRRVVIETV 117 (146)
T ss_pred HHHHHHHHhc
Confidence 9999999876
No 28
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.38 E-value=46 Score=33.55 Aligned_cols=87 Identities=23% Similarity=0.352 Sum_probs=57.3
Q ss_pred CCcCHHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHH---HHHhhcCCCchhHHHHH---------HHH---Hhhhhhh
Q 038087 151 PIMKFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLL---RYFDLQGSSWPLGFLMK---------SWA---MLRNRML 215 (252)
Q Consensus 151 p~l~~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~---RFl~LqasP~~lr~L~R---------sfp---gfr~RlL 215 (252)
||.++.+.+++|+.++..+|+-|-.++.-+ ++.-.+. .|.+=-.+.|+ +|+.. +|+ .=-+=.|
T Consensus 59 ~if~~lr~lq~~F~r~~~vPlsLd~Vi~~l-~~~G~vir~sdf~~~~~sswi-gw~~~~~~~k~l~w~~~~~~~~~~~~l 136 (439)
T KOG2911|consen 59 RIFLVLRTLQELFSRGGGVPLSLDTVIDYL-IQEGDVIRISDFLDDPDSSWI-GWLVGVSIFKPLRWSFSKLKNSASSIL 136 (439)
T ss_pred eEeeHHHHHHHHhccCCCcCccHHHHHHHH-HhccCeeeHHHhhcCCCcccc-hhccceeeechhhhhhhhhccchhHHH
Confidence 778889999999999999999988777644 3333332 33332334453 44422 223 2223345
Q ss_pred cCcchhhhhhhhhhhhhhhhhHHH
Q 038087 216 ADPSFLFKIGTEIVIDSCCATLAE 239 (252)
Q Consensus 216 ADPsFLfKl~~E~vI~i~~~~~aE 239 (252)
-..+++.|+..|..+.+.|.++.|
T Consensus 137 ~e~l~~i~~l~eka~~~~~~ll~~ 160 (439)
T KOG2911|consen 137 EERLPLIKLLKEKALDVYAELLHE 160 (439)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhh
Confidence 556788999999999988777665
No 29
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD. Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.
Probab=26.64 E-value=3.5e+02 Score=22.70 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=26.2
Q ss_pred HhccCCcHHHHHHHHHcCCCHHHHHHHHhhc
Q 038087 164 ARGASLPSDMFEAAKSVGIRKLLLLRYFDLQ 194 (252)
Q Consensus 164 r~~~sLPaDL~~A~e~gGIssa~L~RFl~Lq 194 (252)
....++|++..+|++..|.++-+..++.-+-
T Consensus 107 ~~l~~v~~~~~eaA~alG~s~~~~~~~iilP 137 (212)
T TIGR03003 107 AGIEAVPRGQWEAATALNLTARQTYRHIILP 137 (212)
T ss_pred HHHHcCCHhHHHHHHHcCCCHHHHHHHHHHH
Confidence 4456689999999999999999998887663
No 30
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=26.46 E-value=2.1e+02 Score=19.23 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=26.6
Q ss_pred HHHHHHHHhccCCc-HHHHHHHHHcCCCHHHHHHHHh
Q 038087 157 EVMKEVEARGASLP-SDMFEAAKSVGIRKLLLLRYFD 192 (252)
Q Consensus 157 aVL~Ea~r~~~sLP-aDL~~A~e~gGIssa~L~RFl~ 192 (252)
++|.+++..-..+. ..+.+.++..||+..++..||.
T Consensus 13 ~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 13 KVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccccccccccccccccCHH
Confidence 57788888744443 4555666778899999999985
No 31
>PRK05325 hypothetical protein; Provisional
Probab=26.04 E-value=69 Score=31.72 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.5
Q ss_pred cCCCcCHHHHHHHHHHhccCC
Q 038087 149 FGPIMKFEEVMKEVEARGASL 169 (252)
Q Consensus 149 fgp~l~~eaVL~Ea~r~~~sL 169 (252)
..+.|.+-+-|+++.+|...|
T Consensus 143 ~~~~l~~~RT~r~al~Rrial 163 (401)
T PRK05325 143 PPSNLDKKRTLREALKRRIAL 163 (401)
T ss_pred CcccchHHHHHHHHHHHHhhc
Confidence 456777888889988888776
No 32
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=25.47 E-value=1e+02 Score=25.49 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=9.3
Q ss_pred CCc-HHHHHHHHHcCC
Q 038087 168 SLP-SDMFEAAKSVGI 182 (252)
Q Consensus 168 sLP-aDL~~A~e~gGI 182 (252)
+.| +.|.+|++.+.+
T Consensus 17 s~PD~~L~~aA~~g~L 32 (128)
T PF07631_consen 17 SPPDAELLDAAAAGEL 32 (128)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 445 556777776654
No 33
>PF14407 Frankia_peptide: Ribosomally synthesized peptide prototyped by Frankia Franean1_4349.
Probab=25.24 E-value=34 Score=26.07 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=11.5
Q ss_pred HHhhhhhhcCcch
Q 038087 208 AMLRNRMLADPSF 220 (252)
Q Consensus 208 pgfr~RlLADPsF 220 (252)
++||.|++|||.-
T Consensus 13 ~~FRqqllad~~~ 25 (61)
T PF14407_consen 13 EAFRQQLLADPEE 25 (61)
T ss_pred HHHHHHHhcCHHH
Confidence 6999999999975
No 34
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.21 E-value=76 Score=25.50 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=24.1
Q ss_pred cHHHHHHHHHcCCCHHHHHHHHhhcCC----CchhHH
Q 038087 170 PSDMFEAAKSVGIRKLLLLRYFDLQGS----SWPLGF 202 (252)
Q Consensus 170 PaDL~~A~e~gGIssa~L~RFl~Lqas----P~~lr~ 202 (252)
.-.+.++++..+++++.|.+-|+|... ||.+|-
T Consensus 23 ~ls~~~ia~dL~~s~~~le~vL~l~~~~~~~vW~lRd 59 (89)
T PF10078_consen 23 GLSLEQIAADLGTSPEHLEQVLNLKQPFPEDVWILRD 59 (89)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCcccchHHHH
Confidence 333456677789999999999999943 465554
No 35
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=25.03 E-value=3e+02 Score=20.68 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhhhcCcc-hhhhhhhhhhhhh
Q 038087 155 FEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWA-MLRNRMLADPS-FLFKIGTEIVIDS 232 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfp-gfr~RlLADPs-FLfKl~~E~vI~i 232 (252)
++.|++...... .-|-.+.+.++..++|+..|.|.|.-...-.+..|+.+ .- .---++|.++. =+..++.+++-.-
T Consensus 7 ~~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~f~~~~g~s~~~~i~~-~Rl~~a~~~L~~~~~~i~~iA~~~Gf~~ 84 (107)
T PRK10219 7 IQTLIAWIDEHI-DQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQ-RRLLLAAVELRTTERPIFDIAMDLGYVS 84 (107)
T ss_pred HHHHHHHHHHhc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHCCCC
Confidence 344444444443 44678888888899999999999887755555555543 22 11235555554 4566666665543
Q ss_pred h
Q 038087 233 C 233 (252)
Q Consensus 233 ~ 233 (252)
.
T Consensus 85 ~ 85 (107)
T PRK10219 85 Q 85 (107)
T ss_pred H
Confidence 3
No 36
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=24.53 E-value=48 Score=31.39 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=9.6
Q ss_pred hcCCCcCHHHHHHHH
Q 038087 148 EFGPIMKFEEVMKEV 162 (252)
Q Consensus 148 efgp~l~~eaVL~Ea 162 (252)
.=|..|+|.||=..|
T Consensus 45 ~rGRflKIaE~g~~~ 59 (263)
T KOG3074|consen 45 PRGRFLKIAEVGAGG 59 (263)
T ss_pred CCcceEEEEEeccCC
Confidence 347778887774433
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.70 E-value=72 Score=33.49 Aligned_cols=33 Identities=39% Similarity=0.655 Sum_probs=16.6
Q ss_pred cccccCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
Q 038087 102 YEIKTGSDGNGGNGRF--NNGGGGGGGGGGGSGGG 134 (252)
Q Consensus 102 ~~~~~~~~g~gg~g~~--~~gg~ggg~~ggg~g~g 134 (252)
.+++...+|++|+.+- ||+-|+-|.|-|++++|
T Consensus 734 sd~~qgk~~s~~s~~~~~~s~~~~~gq~~~~ss~g 768 (840)
T KOG2003|consen 734 SDIKQGKDGSAGSRGKLEGSALGDLGQGSGASSGG 768 (840)
T ss_pred hhhhhccCCCCCCCCCCCCcccCCCCCCCCCCCCC
Confidence 3455666788777654 33333334444444433
No 38
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=23.09 E-value=52 Score=28.28 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=28.0
Q ss_pred CHHHHHHHHH----------HhccCCcHHHHHHHHHcCCCHHHHH
Q 038087 154 KFEEVMKEVE----------ARGASLPSDMFEAAKSVGIRKLLLL 188 (252)
Q Consensus 154 ~~eaVL~Ea~----------r~~~sLPaDL~~A~e~gGIssa~L~ 188 (252)
.|+.|++++. ++..=+|+++++|+++-||+.+.|.
T Consensus 59 ~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Ms 103 (127)
T COG3737 59 DFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMS 103 (127)
T ss_pred HHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCcccccc
Confidence 3566777765 5666679999999999999988775
No 39
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=22.83 E-value=92 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhh
Q 038087 172 DMFEAAKSVGIRKLLLLRYFDL 193 (252)
Q Consensus 172 DL~~A~e~gGIssa~L~RFl~L 193 (252)
-+++|++..||+...|.+++.-
T Consensus 18 S~r~AA~~ygVp~sTL~~r~~g 39 (45)
T PF05225_consen 18 SIRKAAKKYGVPRSTLRRRLRG 39 (45)
T ss_dssp -HHHHHHHHT--HHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999988754
No 40
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=22.74 E-value=4.3e+02 Score=21.58 Aligned_cols=75 Identities=24% Similarity=0.162 Sum_probs=45.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHH---HhhhhhhcCcchhhhhhhhhhhhhhhh
Q 038087 159 MKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWA---MLRNRMLADPSFLFKIGTEIVIDSCCA 235 (252)
Q Consensus 159 L~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfp---gfr~RlLADPsFLfKl~~E~vI~i~~~ 235 (252)
.++..+|...||+|-+.|++ .+++||-..+ |...+-++.-+. .+=++--||=.=+.=|.=|=++.+|-.
T Consensus 10 ~k~~~aR~k~LP~dY~~ay~-------~i~~Yl~~~~-~~~g~~~~~il~dildlfEe~aadG~~V~eviGeD~~~Fcde 81 (103)
T PF06304_consen 10 WKAFEARVKALPEDYRIAYK-------AIQKYLWYFG-PTDGRDMMEILSDILDLFEEAAADGKSVREVIGEDVAAFCDE 81 (103)
T ss_dssp HHHHHHHHHCS-HHHHHHHH-------HHHHHHHHHT-BSSHHHHHHHHHHHHHHHHHHHHTT--HHHHH-S-HHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHH-------HHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHcCCChhHhhCCCHHHHHHH
Confidence 46678899999999999999 5789988776 443444444444 444555566555555554555555555
Q ss_pred hHHHHH
Q 038087 236 TLAEVQ 241 (252)
Q Consensus 236 ~~aE~~ 241 (252)
++-++.
T Consensus 82 li~~~~ 87 (103)
T PF06304_consen 82 LIKNYK 87 (103)
T ss_dssp HHCCSC
T ss_pred HHHhcc
Confidence 544443
No 41
>PRK15069 histidine/lysine/arginine/ornithine ABC transporter permease HisM; Provisional
Probab=22.72 E-value=3.7e+02 Score=23.76 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=28.0
Q ss_pred HhccCCcHHHHHHHHHcCCCHHHHHHHHhhcC
Q 038087 164 ARGASLPSDMFEAAKSVGIRKLLLLRYFDLQG 195 (252)
Q Consensus 164 r~~~sLPaDL~~A~e~gGIssa~L~RFl~Lqa 195 (252)
.-..++|++..||++..|.+.-+..|+.-+-.
T Consensus 123 ~g~~~v~~~~~EaA~~lG~s~~q~~~~IilP~ 154 (234)
T PRK15069 123 GAIRSVPHGEIEAARAYGMSTFKLYRRIILPS 154 (234)
T ss_pred HHHHcCCHhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999988753
No 42
>TIGR00718 sda_alpha L-serine dehydratase, iron-sulfur-dependent, alpha subunit. This enzyme is also called serine deaminase. L-serine dehydratase converts serine into pyruvate in the gluconeogenesis pathway from serine. This model describes the alpha chain of an iron-sulfur-dependent L-serine dehydratase, found in Bacillus subtilis. A fairly deep split in a UPGMA tree separates members of this family of alpha chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=22.54 E-value=57 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCcCHHHHHHHHHHhccCCcHHHHHHHHHcC
Q 038087 150 GPIMKFEEVMKEVEARGASLPSDMFEAAKSVG 181 (252)
Q Consensus 150 gp~l~~eaVL~Ea~r~~~sLPaDL~~A~e~gG 181 (252)
-++.++|||...-.+++.+||..+++-.+ +|
T Consensus 243 ~~~Ip~DeVI~aM~~vG~~mp~~lrETs~-GG 273 (294)
T TIGR00718 243 ESLIPCDEVIDAMGEIGNSMIEALRETGL-GG 273 (294)
T ss_pred CCcCCHHHHHHHHHHHHHHhhHHhhhhcC-Cc
Confidence 48999999999999999999999999999 66
No 43
>PRK15135 histidine/lysine/arginine/ornithine ABC transporter permease HisQ; Provisional
Probab=22.02 E-value=5e+02 Score=22.11 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.5
Q ss_pred HHHHHHh-ccCCcHHHHHHHHHcCCCHHHHHHHHhhc
Q 038087 159 MKEVEAR-GASLPSDMFEAAKSVGIRKLLLLRYFDLQ 194 (252)
Q Consensus 159 L~Ea~r~-~~sLPaDL~~A~e~gGIssa~L~RFl~Lq 194 (252)
+.+..|. ..++|++..+|++..|.++-+..++.-+-
T Consensus 108 ~~~~~r~~l~~v~~~~ieaA~~lG~s~~~i~~~vilP 144 (228)
T PRK15135 108 FTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFP 144 (228)
T ss_pred HHHHHHHHHhcCCHhHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444555 68889999999999999999998888773
No 44
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=21.77 E-value=2e+02 Score=23.10 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCC--cHHHHHHHHHcCCCHHHHHHHHh
Q 038087 156 EEVMKEVEARGASL--PSDMFEAAKSVGIRKLLLLRYFD 192 (252)
Q Consensus 156 eaVL~Ea~r~~~sL--PaDL~~A~e~gGIssa~L~RFl~ 192 (252)
+++.+.....+.++ |..|+++++..|+..+.+...++
T Consensus 107 ~al~~a~~~~~~~i~~~~vl~~~~~~~Gld~~~~~~~~~ 145 (193)
T PF01323_consen 107 DALFRAYFVEGRDISDPDVLAEIAEEAGLDPDEFDAALD 145 (193)
T ss_dssp HHHHHHHHTSST-TSSHHHHHHHHHHTT--HHHHHHHHT
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHcCCcHHHHHHHhc
Confidence 44555556656666 56699999999999888777764
No 45
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=21.58 E-value=5.5e+02 Score=22.41 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcc----hhhhhhhhhhhh
Q 038087 156 EEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS----FLFKIGTEIVID 231 (252)
Q Consensus 156 eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPs----FLfKl~~E~vI~ 231 (252)
.++++-..+...+-.-.+.+.++..|||...|.|.|+=. --++..|+.+.==.---++| +|. =+..++.+++-.
T Consensus 200 ~~~~~~I~~~l~~~~ls~~~lA~~~giS~r~L~r~Fk~~-G~T~~~yi~~~RL~~A~~lL-~~~~~~~sI~eIA~~~GF~ 277 (302)
T PRK09685 200 QKVVALIDQSIQEEILRPEWIAGELGISVRSLYRLFAEQ-GLVVAQYIRNRRLDRCADDL-RPAADDEKITSIAYKWGFS 277 (302)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHh-hhhccCCCHHHHHHHhCCC
Confidence 344444444443322355666777889999999999854 33566776552112223455 543 355555555544
Q ss_pred hhhhhH
Q 038087 232 SCCATL 237 (252)
Q Consensus 232 i~~~~~ 237 (252)
-.+...
T Consensus 278 d~s~Fs 283 (302)
T PRK09685 278 DSSHFS 283 (302)
T ss_pred CHHHHH
Confidence 444333
No 46
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=21.14 E-value=66 Score=30.50 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 038087 172 DMFEAAK 178 (252)
Q Consensus 172 DL~~A~e 178 (252)
+++...+
T Consensus 93 ~~~~~~e 99 (263)
T KOG3074|consen 93 ELAAPSE 99 (263)
T ss_pred ccccchh
Confidence 3333333
No 47
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=20.69 E-value=2.1e+02 Score=25.45 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcCCC--------chhHHHHHHHHHhhhhhhcCcchh
Q 038087 171 SDMFEAAKSVGIRKLLLLRYFDLQGSS--------WPLGFLMKSWAMLRNRMLADPSFL 221 (252)
Q Consensus 171 aDL~~A~e~gGIssa~L~RFl~LqasP--------~~lr~L~Rsfpgfr~RlLADPsFL 221 (252)
.+..+-++++ -.-|-+|+.=.+.. .++..|-+=|.-|..|+-.||.||
T Consensus 147 ~~~~~~A~ki---~~NlfNyl~SF~~~~~~~~~~~VP~~~~~~W~~kFe~Kl~~dP~Fl 202 (202)
T PF05603_consen 147 DSTKEFAQKI---AENLFNYLSSFSGSQPQGGEEVVPLSVFDKWWEKFERKLRNDPNFL 202 (202)
T ss_pred ccHHHHHHHH---HHHHHHHHHhccCCCCCCCceEEeHHHHHHHHHHHHHHHhcCCCCC
Confidence 3566656544 23455666544443 566777776788999999999996
No 48
>PF10653 Phage-A118_gp45: Protein gp45 of Bacteriophage A118; InterPro: IPR018915 The proteins in this entry represents Gp45 in Listeria phage A118 (Bacteriophage A118) and related proteins; Gp45 is thought to have a function in the phage tail-fibre system.
Probab=20.61 E-value=62 Score=24.53 Aligned_cols=29 Identities=31% Similarity=0.598 Sum_probs=20.2
Q ss_pred HhhhhhhcCcchhhhhhhhhhhhhhhhhHHHH
Q 038087 209 MLRNRMLADPSFLFKIGTEIVIDSCCATLAEV 240 (252)
Q Consensus 209 gfr~RlLADPsFLfKl~~E~vI~i~~~~~aE~ 240 (252)
.-|-.|+|+|.|-+|+.+ |-.+|--.++|
T Consensus 20 ~~rtkmianpaf~qkipl---ietgcekm~dy 48 (62)
T PF10653_consen 20 NDRTKMIANPAFQQKIPL---IETGCEKMTDY 48 (62)
T ss_pred cchHHHhcCHHHHhccch---hhhhhHHHHHH
Confidence 346789999999999853 44555555544
No 49
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=20.54 E-value=2.1e+02 Score=20.55 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHcC-CCHHHHHHHHhhc
Q 038087 155 FEEVMKEVEARGASLPSDMFEAAKSVG-IRKLLLLRYFDLQ 194 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLPaDL~~A~e~gG-Issa~L~RFl~Lq 194 (252)
..+|-+++.+++.++ ++++...| ++.+++.+.|+.+
T Consensus 14 aa~iAk~A~~~g~sv----re~v~~~g~lt~ee~d~ll~p~ 50 (55)
T PF10415_consen 14 AAEIAKEALAEGRSV----REVVLEEGLLTEEELDELLDPE 50 (55)
T ss_dssp HHHHHHHHHHHT--H----HHHHHHTTSS-HHHHHHHTSHH
T ss_pred HHHHHHHHHHcCCCH----HHHHHHcCCCCHHHHHHHcCHH
Confidence 356778899999875 56666677 9999999999864
No 50
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=20.14 E-value=1.4e+02 Score=23.76 Aligned_cols=27 Identities=56% Similarity=1.105 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 038087 111 NGGNGRFNNGGGGGGGGGGGSGGGNGD 137 (252)
Q Consensus 111 ~gg~g~~~~gg~ggg~~ggg~g~g~~~ 137 (252)
++|.|..+.++++++.++.+.++|...
T Consensus 59 ~~G~G~gg~ggGg~~~G~~g~g~G~~~ 85 (91)
T PF10961_consen 59 SGGGGGGGGGGGGRGMGGGGGGGGPSP 85 (91)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Done!