Query 038087
Match_columns 252
No_of_seqs 96 out of 98
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 12:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pk2_A Cyclin-T1, protein TAT; 95.1 0.0037 1.3E-07 56.8 0.0 8 110-117 280-287 (358)
2 3hht_A NitrIle hydratase alpha 51.2 23 0.00077 31.4 5.4 41 180-220 39-86 (216)
3 3mn2_A Probable ARAC family tr 48.0 72 0.0025 22.7 8.1 81 155-236 4-87 (108)
4 3qyh_A CO-type nitrIle hydrata 46.4 22 0.00077 31.7 4.6 44 177-220 48-97 (226)
5 2l6f_A Focal adhesion kinase 1 49.0 5.1 0.00017 35.5 0.0 7 36-42 46-52 (215)
6 3mkl_A HTH-type transcriptiona 42.7 93 0.0032 22.7 6.9 73 155-229 9-82 (120)
7 3a8g_A NitrIle hydratase subun 41.9 15 0.0005 32.5 2.7 48 174-221 27-81 (207)
8 1ugp_A NitrIle hydratase alpha 40.7 25 0.00084 31.0 3.9 51 173-223 23-80 (203)
9 2zzd_C Thiocyanate hydrolase s 35.9 32 0.0011 31.0 4.0 46 176-221 37-88 (243)
10 3oou_A LIN2118 protein; protei 34.9 1.2E+02 0.0042 21.5 6.9 76 155-231 7-83 (108)
11 3pgz_A Single-stranded DNA-bin 34.3 9.4 0.00032 32.7 0.3 13 92-104 129-141 (193)
12 3lsg_A Two-component response 31.4 1.4E+02 0.0046 21.0 7.3 76 156-231 5-81 (103)
13 2k9s_A Arabinose operon regula 27.5 1.7E+02 0.0056 20.8 7.3 77 155-231 5-82 (107)
14 3gbg_A TCP pilus virulence reg 25.3 2.7E+02 0.0092 22.5 7.6 75 154-230 170-245 (276)
15 1ug0_A Splicing factor 4; SURP 25.0 1.3E+02 0.0044 22.4 5.1 13 166-178 18-32 (88)
16 3mky_B Protein SOPB; partition 24.7 66 0.0023 27.6 3.9 88 154-247 25-118 (189)
17 2p0t_A UPF0307 protein pspto_4 24.4 1E+02 0.0035 26.1 4.9 47 146-192 15-73 (176)
18 3rpp_A Glutathione S-transfera 22.8 2.3E+02 0.0077 23.3 6.7 67 156-222 119-188 (234)
19 4fm4_A NitrIle hydratase alpha 22.5 44 0.0015 29.5 2.4 40 180-219 24-69 (209)
20 3pgw_S U1-70K; protein-RNA com 21.7 1.1E+02 0.0037 28.1 5.0 92 8-138 123-217 (437)
21 2jt1_A PEFI protein; solution 20.7 56 0.0019 23.7 2.3 39 155-193 6-47 (77)
22 2o3l_A Hypothetical protein; s 20.2 81 0.0028 23.8 3.2 30 160-196 4-33 (85)
No 1
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=95.11 E-value=0.0037 Score=56.84 Aligned_cols=8 Identities=38% Similarity=0.584 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 038087 110 GNGGNGRF 117 (252)
Q Consensus 110 g~gg~g~~ 117 (252)
+.||+|++
T Consensus 280 ~~~~~~~~ 287 (358)
T 2pk2_A 280 EQGGTGGG 287 (358)
T ss_dssp --------
T ss_pred ccCCCCCC
Confidence 45565544
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=51.23 E-value=23 Score=31.45 Aligned_cols=41 Identities=17% Similarity=0.341 Sum_probs=30.3
Q ss_pred cC-CCHHHHHHHHhh-cC--CCch-hHHHHHHH--HHhhhhhhcCcch
Q 038087 180 VG-IRKLLLLRYFDL-QG--SSWP-LGFLMKSW--AMLRNRMLADPSF 220 (252)
Q Consensus 180 gG-Issa~L~RFl~L-qa--sP~~-lr~L~Rsf--pgfr~RlLADPsF 220 (252)
-| |+++.+.++.+. +. .|.. .+.+-|+| |.||.|||+||.=
T Consensus 39 kg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~a 86 (216)
T 3hht_A 39 KGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSET 86 (216)
T ss_dssp TTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred cCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHH
Confidence 44 999999999986 33 4522 34556666 7999999999973
No 3
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=48.02 E-value=72 Score=22.68 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcc---hhhhhhhhhhhh
Q 038087 155 FEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS---FLFKIGTEIVID 231 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPs---FLfKl~~E~vI~ 231 (252)
+++|++........ |-.+.+.++..|+++..|.|.|.-...-++..++.+.==----++|.++. =+..++.+++-.
T Consensus 4 i~~~~~~i~~~~~~-~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~ 82 (108)
T 3mn2_A 4 VRQVEEYIEANWMR-PITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFS 82 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHcccC-CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCC
Confidence 34555555555432 44566667778899999999999876655556654422222345666554 466666666655
Q ss_pred hhhhh
Q 038087 232 SCCAT 236 (252)
Q Consensus 232 i~~~~ 236 (252)
-....
T Consensus 83 ~~s~F 87 (108)
T 3mn2_A 83 NLGHF 87 (108)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 44333
No 4
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=46.42 E-value=22 Score=31.67 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=31.3
Q ss_pred HHHcCCCHHHHHHHHh-hcC--CCc-hhHHHHHHH--HHhhhhhhcCcch
Q 038087 177 AKSVGIRKLLLLRYFD-LQG--SSW-PLGFLMKSW--AMLRNRMLADPSF 220 (252)
Q Consensus 177 ~e~gGIssa~L~RFl~-Lqa--sP~-~lr~L~Rsf--pgfr~RlLADPsF 220 (252)
++.+-|+++.+.++++ ++. .|. =.+.+-|+| |.|+.|||+||.=
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~a 97 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTA 97 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHH
Confidence 3444499999999988 433 442 135566667 7999999999973
No 5
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=48.99 E-value=5.1 Score=35.52 Aligned_cols=7 Identities=0% Similarity=0.467 Sum_probs=2.9
Q ss_pred Eeeeccc
Q 038087 36 VRFKKFV 42 (252)
Q Consensus 36 ~~f~~~~ 42 (252)
+..|+++
T Consensus 46 l~LR~LL 52 (215)
T 2l6f_A 46 LALRTLL 52 (215)
Confidence 3444443
No 6
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=42.72 E-value=93 Score=22.66 Aligned_cols=73 Identities=10% Similarity=0.019 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcch-hhhhhhhhh
Q 038087 155 FEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPSF-LFKIGTEIV 229 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPsF-LfKl~~E~v 229 (252)
+.+|++........ |-.+.+.++..++++..|.|.|.-. .-.+..++.+.==----++|.++.. +.-++.+++
T Consensus 9 ~~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA~~~G 82 (120)
T 3mkl_A 9 RTRVCTVINNNIAH-EWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCG 82 (120)
T ss_dssp HHHHHHHHHTSTTS-CCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHhccC-CCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHC
Confidence 45566655555544 6667778888999999999999876 4344455443211223356665543 333444443
No 7
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=41.85 E-value=15 Score=32.45 Aligned_cols=48 Identities=17% Similarity=0.264 Sum_probs=31.3
Q ss_pred HHHHHHcC-CCHHHHHHHHhhcC---CC-chhHHHHHHH--HHhhhhhhcCcchh
Q 038087 174 FEAAKSVG-IRKLLLLRYFDLQG---SS-WPLGFLMKSW--AMLRNRMLADPSFL 221 (252)
Q Consensus 174 ~~A~e~gG-Issa~L~RFl~Lqa---sP-~~lr~L~Rsf--pgfr~RlLADPsFL 221 (252)
.+.+..-| |+++.+.++.+... .| .=.+.+-|+| |.|+.|||+|+.=-
T Consensus 27 ~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~aA 81 (207)
T 3a8g_A 27 FRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAA 81 (207)
T ss_dssp HHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHHHH
Confidence 33333344 88888888777532 23 1134556777 79999999999743
No 8
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=40.68 E-value=25 Score=30.98 Aligned_cols=51 Identities=18% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHHHHcC-CCHHHHHHHHhhcCC---Cc-hhHHHHHHH--HHhhhhhhcCcchhhh
Q 038087 173 MFEAAKSVG-IRKLLLLRYFDLQGS---SW-PLGFLMKSW--AMLRNRMLADPSFLFK 223 (252)
Q Consensus 173 L~~A~e~gG-Issa~L~RFl~Lqas---P~-~lr~L~Rsf--pgfr~RlLADPsFLfK 223 (252)
|.+.+..-| |+++.+.++.+.... |. =.+.+-|+| |.|+.|||+|+.=..|
T Consensus 23 L~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA~~ 80 (203)
T 1ugp_A 23 LESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEACK 80 (203)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHHHH
Confidence 333333345 999999998885332 31 134556667 7999999999975544
No 9
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=35.87 E-value=32 Score=30.99 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=31.2
Q ss_pred HHHHcC-CCHHHHHHHHhhc-C-CCc-hhHHHHHHH--HHhhhhhhcCcchh
Q 038087 176 AAKSVG-IRKLLLLRYFDLQ-G-SSW-PLGFLMKSW--AMLRNRMLADPSFL 221 (252)
Q Consensus 176 A~e~gG-Issa~L~RFl~Lq-a-sP~-~lr~L~Rsf--pgfr~RlLADPsFL 221 (252)
.+..-| |+++.+.++++.- . .|. =.+.+-|+| |.|+.|||+|+.=.
T Consensus 37 lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~aa 88 (243)
T 2zzd_C 37 LAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGVEA 88 (243)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChHHH
Confidence 333344 9999998888752 2 341 135566777 79999999998743
No 10
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=34.87 E-value=1.2e+02 Score=21.52 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcc-hhhhhhhhhhhh
Q 038087 155 FEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS-FLFKIGTEIVID 231 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPs-FLfKl~~E~vI~ 231 (252)
+..|++........ |-.+.+.++..|+|+..|.|.|.-...-++..++.+.==.---++|.++. =+..++.+++-.
T Consensus 7 i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~ 83 (108)
T 3oou_A 7 IQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYT 83 (108)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCC
Confidence 45566555555544 55677777778899999999998774444445543311122233454443 344455555443
No 11
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=34.26 E-value=9.4 Score=32.68 Aligned_cols=13 Identities=8% Similarity=0.240 Sum_probs=4.8
Q ss_pred ccccccccccccc
Q 038087 92 GKDVKVLENDYEI 104 (252)
Q Consensus 92 ~~d~~~l~~~~~~ 104 (252)
+.++..|++-.+.
T Consensus 129 ~~~i~fL~sk~~~ 141 (193)
T 3pgz_A 129 RGELQMLDGRAAA 141 (193)
T ss_dssp CCEEEECC-----
T ss_pred cCceEECcCCCCC
Confidence 4456667655443
No 12
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=31.35 E-value=1.4e+02 Score=21.00 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcc-hhhhhhhhhhhh
Q 038087 156 EEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS-FLFKIGTEIVID 231 (252)
Q Consensus 156 eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPs-FLfKl~~E~vI~ 231 (252)
+.|++-.......=|-.+.+.++..++++..|.|.|.-...-++..++.+.==.---++|.++. =+..++.+++-.
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~ 81 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFE 81 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCS
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCC
Confidence 3444444444444345667777888999999999998875545445544311122234455543 344455554443
No 13
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=27.47 E-value=1.7e+02 Score=20.76 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcc-hhhhhhhhhhhh
Q 038087 155 FEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS-FLFKIGTEIVID 231 (252)
Q Consensus 155 ~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPs-FLfKl~~E~vI~ 231 (252)
+.+|++-......+=|-.+.+.++..|+|+..|.|.|.-...-++..++.+.==.---++|.++. =+.-++.+++-.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~ 82 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFD 82 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCC
Confidence 55666666666653344566777778999999999998764444445544311112234454433 234444444443
No 14
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=25.25 E-value=2.7e+02 Score=22.47 Aligned_cols=75 Identities=5% Similarity=-0.013 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhhhhhhcCcc-hhhhhhhhhhh
Q 038087 154 KFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLRNRMLADPS-FLFKIGTEIVI 230 (252)
Q Consensus 154 ~~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr~RlLADPs-FLfKl~~E~vI 230 (252)
.+.++++...+.... |-.+.+.|+..++|+..|.|.|. +..-++..|+.+.-=----|+|.++. =+.-++.+++-
T Consensus 170 ~~~~~~~~i~~~~~~-~~sl~~lA~~~~~S~~~l~r~fk-~~G~t~~~~l~~~Rl~~A~~lL~~~~~si~eIA~~~Gf 245 (276)
T 3gbg_A 170 AMEKISCLVKSDITR-NWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGF 245 (276)
T ss_dssp HHHHHHHHHHHTTTS-CCCHHHHHHHHTCCHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhcC-CCCHHHHHHHHCcCHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCC
Confidence 366777777666665 55677777878899999999998 44446666665422222234555544 34444444443
No 15
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=25.02 E-value=1.3e+02 Score=22.45 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=8.1
Q ss_pred ccCCcH--HHHHHHH
Q 038087 166 GASLPS--DMFEAAK 178 (252)
Q Consensus 166 ~~sLPa--DL~~A~e 178 (252)
....|. +++..|+
T Consensus 18 ~v~pP~d~~~~~iId 32 (88)
T 1ug0_A 18 KVSPPEGAETRRVIE 32 (88)
T ss_dssp CCSSGGGHHHHHHHH
T ss_pred eeCCCCCHHHHHHHH
Confidence 345674 5677777
No 16
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=24.66 E-value=66 Score=27.63 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHH---HhhhhhhcCcchhhhh--hhh
Q 038087 154 KFEEVMKEVEARGASL-PSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWA---MLRNRMLADPSFLFKI--GTE 227 (252)
Q Consensus 154 ~~eaVL~Ea~r~~~sL-PaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfp---gfr~RlLADPsFLfKl--~~E 227 (252)
+.=|.=+++.+.+.+- =.+..+.+++.|||.+.+.|+|++..-|- .|++.|| .+.-|-- ..|+|+ ..+
T Consensus 25 S~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP~---~lv~~fp~p~dLs~~~~---~~L~k~~~~~~ 98 (189)
T 3mky_B 25 SAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPK---SVVALFSHPGELSARSG---DALQKAFTDKE 98 (189)
T ss_dssp CHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSCH---HHHHTSSSGGGSCHHHH---HHHHHHTTTCH
T ss_pred CHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHhcCCH---HHHHHcCCHHhcCchhH---HHHHHHHhccH
Confidence 4444456677777665 35556667778899999999999987763 3455565 1111110 112222 223
Q ss_pred hhhhhhhhhHHHHHhhccch
Q 038087 228 IVIDSCCATLAEVQKRGKDF 247 (252)
Q Consensus 228 ~vI~i~~~~~aE~~~RgerF 247 (252)
..+..++..+.|.++.+..|
T Consensus 99 ~ll~~~a~~l~e~~~~G~~~ 118 (189)
T 3mky_B 99 ELLKQQASNLHEQKKAGVIF 118 (189)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhccCCcC
Confidence 35555666666777666543
No 17
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=24.37 E-value=1e+02 Score=26.14 Aligned_cols=47 Identities=11% Similarity=0.044 Sum_probs=24.8
Q ss_pred hhhcCCCcCHHHHHHHHHHhccCC----------cHHHHHHHHHcC-CCH-HHHHHHHh
Q 038087 146 EREFGPIMKFEEVMKEVEARGASL----------PSDMFEAAKSVG-IRK-LLLLRYFD 192 (252)
Q Consensus 146 ~~efgp~l~~eaVL~Ea~r~~~sL----------PaDL~~A~e~gG-Iss-a~L~RFl~ 192 (252)
+.+=.-+++--+-|+.++..+.+| |.+|++|+.... |++ +-..|-+.
T Consensus 15 ~~SKSq~KRe~~~lq~LG~eL~~Ls~~ql~klpL~e~L~~Ai~~a~ri~~~earRRQlq 73 (176)
T 2p0t_A 15 EKSKTQVKRELHALVDLGERLTTLKADVLAKLPLTDALRKALAEAPKHTANIARKRHIL 73 (176)
T ss_dssp ----------CHHHHHHHHHHTTSCHHHHTTSCCCHHHHHHHHHGGGCCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCHHHHhcCCCCHHHHHHHHHHhhccccHHHHHHHH
Confidence 333444555566788888888776 567888887655 764 34444443
No 18
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa GST, TRX domain, GSH binding, detoxification, APO form; 1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Probab=22.76 E-value=2.3e+02 Score=23.29 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCC--cHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHHHhh-hhhhcCcchhh
Q 038087 156 EEVMKEVEARGASL--PSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWAMLR-NRMLADPSFLF 222 (252)
Q Consensus 156 eaVL~Ea~r~~~sL--PaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfpgfr-~RlLADPsFLf 222 (252)
+++++.....+.++ |..|+++++..|+..+.+.+|++--.++-....+-+...-.+ --+-.=|.|++
T Consensus 119 ~al~~A~~~~g~di~d~~~L~~~a~~~GLd~~~~~~~l~~~~s~~~~~~l~~~~~~a~~~Gv~GvPtfvv 188 (234)
T 3rpp_A 119 RELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVA 188 (234)
T ss_dssp HHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHTTCSSSCEEEE
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 44455445555554 889999999999999999999987667655455544443222 22344455543
No 19
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=22.47 E-value=44 Score=29.48 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=28.6
Q ss_pred cCCCHHHHHHHHhh-cC--CCc-hhHHHHHHH--HHhhhhhhcCcc
Q 038087 180 VGIRKLLLLRYFDL-QG--SSW-PLGFLMKSW--AMLRNRMLADPS 219 (252)
Q Consensus 180 gGIssa~L~RFl~L-qa--sP~-~lr~L~Rsf--pgfr~RlLADPs 219 (252)
+-|.++.+.+|.+. +. .|. =.+.+-|+| |.||.|||+|+.
T Consensus 24 Gli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 24 GLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp TSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred CCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 33999999888873 32 231 135566777 799999999995
No 20
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=21.66 E-value=1.1e+02 Score=28.14 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred ccccceeeecccceeeccccccccceEEEeeecccchhcccce-eeccc--eeeeeeeeccCCCChhhhcccccceeeee
Q 038087 8 FGGLSHVVNVGNEVVLGKIWSQSSVFCKVRFKKFVKEVYLPHV-SVKGK--QMRLVAMSSNMSESSAELQSGVASSVERK 84 (252)
Q Consensus 8 ~~~~~~~~~~~~~v~~~~~~~~s~~~~~~~f~~~~~~~~~~~v-~~~~~--~~rl~~~~~~msqs~~e~qs~~~~t~~~k 84 (252)
|..|-.|..+. |+..+..-.+..++-|.|.+. +...-++ .+.|. .-+.|. +..+++...
T Consensus 123 F~~~G~I~~v~--i~~d~~tg~~kG~aFV~F~~~--e~A~~Ai~~lng~~i~gr~i~--V~~a~~~~~------------ 184 (437)
T 3pgw_S 123 FEVYGPIKRIH--MVYSKRSGKPRGYAFIEYEHE--RDMHSAYKHADGKKIDGRRVL--VDVERGRTV------------ 184 (437)
T ss_pred HHHcCCeeEEE--eeccCCCCCccceEEEeeccH--HHHHHHHHHcCCCEECCEEEE--EEEeCCCCC------------
Q ss_pred cCCcCcccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 038087 85 EGNVGGVGKDVKVLENDYEIKTGSDGNGGNGRFNNGGGGGGGGGGGSGGGNGDD 138 (252)
Q Consensus 85 ~~~~~~~~~d~~~l~~~~~~~~~~~g~gg~g~~~~gg~ggg~~ggg~g~g~~~d 138 (252)
.......+.|+++++++||++.++..++.....
T Consensus 185 ---------------------~~~~~~~~ggG~gg~~~gg~~~~~~~~gr~~~~ 217 (437)
T 3pgw_S 185 ---------------------KGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTS 217 (437)
T ss_pred ---------------------CCCCCCCcCCCCCCCCCCCCccccccccccccc
No 21
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.74 E-value=56 Score=23.69 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhccC---CcHHHHHHHHHcCCCHHHHHHHHhh
Q 038087 155 FEEVMKEVEARGAS---LPSDMFEAAKSVGIRKLLLLRYFDL 193 (252)
Q Consensus 155 ~eaVL~Ea~r~~~s---LPaDL~~A~e~gGIssa~L~RFl~L 193 (252)
..+||+...+.... -|.-.++.++..|||+..+.|+|.-
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666665333 4677888888888999999998864
No 22
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=20.18 E-value=81 Score=23.83 Aligned_cols=30 Identities=30% Similarity=0.206 Sum_probs=24.1
Q ss_pred HHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 038087 160 KEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGS 196 (252)
Q Consensus 160 ~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~Lqas 196 (252)
++..+|...||+|-+.|++ .|++||-....
T Consensus 4 k~~~aR~k~LP~dY~~ay~-------~i~~Yl~~~~~ 33 (85)
T 2o3l_A 4 KMMMARVAALPEDYQFVFK-------KIQNYMWNFSA 33 (85)
T ss_dssp HHHHHHHHTSCHHHHHHHH-------HHHHHHHHHCC
T ss_pred HHHHHHHHHCCHHHHHHHH-------HHHHHHHHhCC
Confidence 5678899999999999999 46788776533
Done!