Query 038087
Match_columns 252
No_of_seqs 96 out of 98
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 12:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038087.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038087hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 59.2 1.7 0.00013 29.6 1.4 29 200-228 28-56 (57)
2 d1v29a_ d.149.1.1 (A:) Cobalt- 55.7 7.1 0.00052 32.2 5.0 43 177-219 27-75 (203)
3 d1ugpa_ d.149.1.1 (A:) Cobalt- 55.3 5.1 0.00037 33.2 4.0 61 156-219 10-76 (203)
4 d2qdya1 d.149.1.1 (A:10-206) I 38.9 8.9 0.00065 31.5 2.9 39 181-219 26-70 (197)
5 d2cqxa1 a.4.1.1 (A:8-66) LAG1 34.3 31 0.0023 22.2 4.7 38 156-193 13-52 (59)
6 d1rxqa_ a.213.1.1 (A:) YfiT {B 31.8 16 0.0011 26.4 3.1 64 147-214 7-75 (174)
7 d1b0na1 a.34.1.1 (A:74-108) Si 31.2 15 0.0011 22.7 2.4 22 173-195 9-30 (35)
8 d2fbqa2 a.121.1.1 (A:81-214) T 29.1 55 0.004 23.4 5.8 54 185-242 12-67 (134)
9 d1r71a_ a.4.14.1 (A:) Transcri 28.1 23 0.0017 24.8 3.4 34 172-205 32-65 (114)
10 d1bl0a1 a.4.1.8 (A:9-62) MarA 27.1 30 0.0022 21.0 3.4 49 154-203 4-52 (54)
11 d1ijwc_ a.4.1.2 (C:) HIN recom 26.3 18 0.0013 22.9 2.2 20 173-192 24-43 (47)
12 d1wi3a_ a.4.1.1 (A:) DNA-bindi 25.1 61 0.0044 21.1 5.0 36 157-192 20-57 (71)
13 d2p0ta1 a.290.1.1 (A:22-169) U 23.8 41 0.003 25.5 4.3 25 167-191 22-48 (148)
14 d1x2ma1 a.4.1.1 (A:8-59) Lag1 23.0 78 0.0057 19.7 5.0 37 156-192 5-43 (52)
15 d2prva1 d.369.1.1 (A:1-152) Un 22.9 45 0.0032 23.6 4.2 38 144-181 14-51 (152)
16 d2fbqa1 a.4.1.9 (A:2-80) Trans 21.0 32 0.0024 22.0 2.8 42 156-198 7-51 (79)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.20 E-value=1.7 Score=29.64 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhhhhcCcchhhhhhhhh
Q 038087 200 LGFLMKSWAMLRNRMLADPSFLFKIGTEI 228 (252)
Q Consensus 200 lr~L~Rsfpgfr~RlLADPsFLfKl~~E~ 228 (252)
+--|+.++|-+|+.+++||.-..-++.|-
T Consensus 28 le~ls~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHhh
Confidence 45566667899999999999776676664
No 2
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=55.67 E-value=7.1 Score=32.24 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=31.4
Q ss_pred HHHcCCCHHHHHHHHh-hcCC--Cc-hhHHHHHHH--HHhhhhhhcCcc
Q 038087 177 AKSVGIRKLLLLRYFD-LQGS--SW-PLGFLMKSW--AMLRNRMLADPS 219 (252)
Q Consensus 177 ~e~gGIssa~L~RFl~-Lqas--P~-~lr~L~Rsf--pgfr~RlLADPs 219 (252)
++.+-|+++.+.+.++ ++.+ |. =.+.+-|+| |.||.|||+|+.
T Consensus 27 ieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 4444499999999998 4433 42 135566777 799999999986
No 3
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=55.32 E-value=5.1 Score=33.16 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=38.4
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhh-cC--CCc-hhHHHHHHH--HHhhhhhhcCcc
Q 038087 156 EEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDL-QG--SSW-PLGFLMKSW--AMLRNRMLADPS 219 (252)
Q Consensus 156 eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~L-qa--sP~-~lr~L~Rsf--pgfr~RlLADPs 219 (252)
+++-.+...|...|=.-| ++.+-|+++.+.++++. +. .|. =.+.+-|+| |.|+.|||+|+.
T Consensus 10 e~~~~~~~~RvkAle~lL---ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 10 EEIQKEITARVKALESML---IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred hhccccHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 444444444443332222 34344999999999984 33 352 135566777 799999999986
No 4
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=38.87 E-value=8.9 Score=31.47 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHhh-cCC--Cc-hhHHHHHHH--HHhhhhhhcCcc
Q 038087 181 GIRKLLLLRYFDL-QGS--SW-PLGFLMKSW--AMLRNRMLADPS 219 (252)
Q Consensus 181 GIssa~L~RFl~L-qas--P~-~lr~L~Rsf--pgfr~RlLADPs 219 (252)
-|+++.+.++++. +.. |. =.+.+-|+| |.|+.|||+||.
T Consensus 26 li~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 26 LVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp CSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred CCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 3999999988874 444 42 135566777 799999999997
No 5
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.29 E-value=31 Score=22.23 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCc--HHHHHHHHHcCCCHHHHHHHHhh
Q 038087 156 EEVMKEVEARGASLP--SDMFEAAKSVGIRKLLLLRYFDL 193 (252)
Q Consensus 156 eaVL~Ea~r~~~sLP--aDL~~A~e~gGIssa~L~RFl~L 193 (252)
.+||.+++.+..-.| .++.+-++..|++..++..||.-
T Consensus 13 ~~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqN 52 (59)
T d2cqxa1 13 NDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRH 52 (59)
T ss_dssp TTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 368999997765555 57777888899999999998853
No 6
>d1rxqa_ a.213.1.1 (A:) YfiT {Bacillus subtilis [TaxId: 1423]}
Probab=31.81 E-value=16 Score=26.36 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=44.2
Q ss_pred hhcCCCcCHH-HHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHHHHH----Hhhhhh
Q 038087 147 REFGPIMKFE-EVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMKSWA----MLRNRM 214 (252)
Q Consensus 147 ~efgp~l~~e-aVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~Rsfp----gfr~Rl 214 (252)
-||.|+..+. +-++++-+.+++.|+.|.++++ +++.++|.. ......|-.+.++..+- .|..|+
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~L~~~~~~L~~~l~--~Ls~e~l~~--~~~~~~WSi~~il~Hl~~~e~~~~~r~ 75 (174)
T d1rxqa_ 7 GEYKPRESISKEQKDKWIQVLEEVPAKLKQAVE--VMTDSQLDT--PYRDGGWTVRQVVHHLADSHMNSYIRF 75 (174)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHT--TCCHHHHTS--BSSTTSCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHhcC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3788855444 3457788888888999999987 799998763 33333466777777773 455554
No 7
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=31.21 E-value=15 Score=22.73 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=18.0
Q ss_pred HHHHHHHcCCCHHHHHHHHhhcC
Q 038087 173 MFEAAKSVGIRKLLLLRYFDLQG 195 (252)
Q Consensus 173 L~~A~e~gGIssa~L~RFl~Lqa 195 (252)
.++|.. -|||++|...||++++
T Consensus 9 VkeAM~-SGvSK~QFrEflef~k 30 (35)
T d1b0na1 9 VRDAMT-SGVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHH-SCCCHHHHHHHHHHHH
T ss_pred HHHHHH-ccCCHHHHHHHHHHHH
Confidence 456776 7899999999999863
No 8
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.11 E-value=55 Score=23.44 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCC-chhHHHHHHHHHhhhhhhcCcc-hhhhhhhhhhhhhhhhhHHHHHh
Q 038087 185 LLLLRYFDLQGSS-WPLGFLMKSWAMLRNRMLADPS-FLFKIGTEIVIDSCCATLAEVQK 242 (252)
Q Consensus 185 a~L~RFl~LqasP-~~lr~L~Rsfpgfr~RlLADPs-FLfKl~~E~vI~i~~~~~aE~~~ 242 (252)
+.+.-+|++..++ .-.++++| +..|.++||+ ++-|+..+..-.+.......+++
T Consensus 12 a~~~p~l~~~~~~~~~~~~f~r----Ll~R~~~ep~~~lr~~~~~~~~p~~~rf~~al~~ 67 (134)
T d2fbqa2 12 LLVSQAMAVKPRSGNDLSIFMR----LLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNE 67 (134)
T ss_dssp HHHHHHHHSCCSSSCHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCchhHHHH----HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677886543 22244444 6789999997 78888888888777777777665
No 9
>d1r71a_ a.4.14.1 (A:) Transcriptional repressor protein KorB DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=28.09 E-value=23 Score=24.75 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHhhcCCCchhHHHHH
Q 038087 172 DMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFLMK 205 (252)
Q Consensus 172 DL~~A~e~gGIssa~L~RFl~LqasP~~lr~L~R 205 (252)
...+.++..|++...+.+|+.|-.-|-.+..++.
T Consensus 32 s~~eiA~~~G~s~~~V~~~l~L~~lp~~v~~~~~ 65 (114)
T d1r71a_ 32 KKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFN 65 (114)
T ss_dssp CHHHHHHHHTCCHHHHHHHHGGGSCCHHHHHHHH
T ss_pred CHHHHHHHHCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 3456777788999999999999888765555544
No 10
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=27.08 E-value=30 Score=20.97 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHcCCCHHHHHHHHhhcCCCchhHHH
Q 038087 154 KFEEVMKEVEARGASLPSDMFEAAKSVGIRKLLLLRYFDLQGSSWPLGFL 203 (252)
Q Consensus 154 ~~eaVL~Ea~r~~~sLPaDL~~A~e~gGIssa~L~RFl~LqasP~~lr~L 203 (252)
.+++|++-..+.. +=|-++.+.++..|+++..+.|.|.=...-++..+|
T Consensus 4 ~i~~v~~yI~~~~-~~~~tl~~lA~~~~~s~~~l~r~Fk~~~g~tp~~Yl 52 (54)
T d1bl0a1 4 TIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYI 52 (54)
T ss_dssp HHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHhcc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHh
Confidence 3667777666666 458888888999999999999998766555555553
No 11
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=26.29 E-value=18 Score=22.87 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=16.9
Q ss_pred HHHHHHHcCCCHHHHHHHHh
Q 038087 173 MFEAAKSVGIRKLLLLRYFD 192 (252)
Q Consensus 173 L~~A~e~gGIssa~L~RFl~ 192 (252)
..+.++..|||.+.|-|||-
T Consensus 24 ~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 24 RQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp HHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHCcCHHHHHhhCC
Confidence 66777888899999999983
No 12
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.13 E-value=61 Score=21.12 Aligned_cols=36 Identities=8% Similarity=0.305 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCCc--HHHHHHHHHcCCCHHHHHHHHh
Q 038087 157 EVMKEVEARGASLP--SDMFEAAKSVGIRKLLLLRYFD 192 (252)
Q Consensus 157 aVL~Ea~r~~~sLP--aDL~~A~e~gGIssa~L~RFl~ 192 (252)
++|+.++....--| ....+-++..||+..++..||.
T Consensus 20 ~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFq 57 (71)
T d1wi3a_ 20 GILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQ 57 (71)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhH
Confidence 78888887544344 4455567778899999988874
No 13
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=23.82 E-value=41 Score=25.45 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=15.9
Q ss_pred cCCcHHHHHHHHHcC-CCH-HHHHHHH
Q 038087 167 ASLPSDMFEAAKSVG-IRK-LLLLRYF 191 (252)
Q Consensus 167 ~sLPaDL~~A~e~gG-Iss-a~L~RFl 191 (252)
..||.+|.+|+.... |.+ ....|-+
T Consensus 22 lpl~e~L~~AI~~~~ri~~~~A~rRQ~ 48 (148)
T d2p0ta1 22 LPLTDALRKALAEAPKHTANIARKRHI 48 (148)
T ss_dssp SCCCHHHHHHHHHGGGCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccchHHHHHH
Confidence 355778888888775 764 4444443
No 14
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.00 E-value=78 Score=19.66 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccCCc--HHHHHHHHHcCCCHHHHHHHHh
Q 038087 156 EEVMKEVEARGASLP--SDMFEAAKSVGIRKLLLLRYFD 192 (252)
Q Consensus 156 eaVL~Ea~r~~~sLP--aDL~~A~e~gGIssa~L~RFl~ 192 (252)
-+||..++.....-| ..+.+-++..|++..++..||.
T Consensus 5 ~~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFq 43 (52)
T d1x2ma1 5 NAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFR 43 (52)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 478888887755444 6667778888999999998885
No 15
>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}
Probab=22.89 E-value=45 Score=23.64 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=30.3
Q ss_pred hhhhhcCCCcCHHHHHHHHHHhccCCcHHHHHHHHHcC
Q 038087 144 YEEREFGPIMKFEEVMKEVEARGASLPSDMFEAAKSVG 181 (252)
Q Consensus 144 ~~~~efgp~l~~eaVL~Ea~r~~~sLPaDL~~A~e~gG 181 (252)
.++..|.+..+.++|-+.=.+-+..||++.++-++..+
T Consensus 14 ~~~~~~~~gas~e~I~~~E~~Lg~~LP~~Yk~fL~~~n 51 (152)
T d2prva1 14 KQNAIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYG 51 (152)
T ss_dssp GGGCEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred ccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHcC
Confidence 44567889999998777666677999999999888644
No 16
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.04 E-value=32 Score=22.05 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=26.2
Q ss_pred HHHHHHHHHhccCCc---HHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 038087 156 EEVMKEVEARGASLP---SDMFEAAKSVGIRKLLLLRYFDLQGSSW 198 (252)
Q Consensus 156 eaVL~Ea~r~~~sLP---aDL~~A~e~gGIssa~L~RFl~LqasP~ 198 (252)
+++|+.+.+-..+-+ .-|.+.++..||+...+-+||. .+...
T Consensus 7 e~Il~aa~~~~~~~G~~~~ti~~Ia~~agvs~~s~y~~F~-~K~~l 51 (79)
T d2fbqa1 7 ERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFG-SKKAL 51 (79)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTC-SHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHCcChhHHHHHCc-CHHHH
Confidence 344444444333322 2366777888899999999997 44433
Done!