BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038090
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 60/198 (30%)
Query: 27 LGVLDLSYNHFAFKLQKSGLSNLAKKL-----------------------TNLIEIYLID 63
L VLDLS+N F+ +L +S L+NL+ L L E+YL +
Sbjct: 342 LKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 64 VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL------------------ 105
+ + PTL+N S L+ L +S F YL + SL
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLS-------FNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 106 -----------LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL 154
LE L L F G+IP L N TNL LS+N +GE+P +G+L +L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 155 KTFDISSCNILGKIPTSL 172
+S+ + G IP L
Sbjct: 514 AILKLSNNSFSGNIPAEL 531
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 12 GVETSNISRVARALQLGVLDLSYNHFA----FKLQKSGLSNL-----------AKKLTNL 56
G + S V+R + L LD+S N+F+ F S L +L ++ ++
Sbjct: 184 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 57 IEIYLIDVDTSSAVSPTLT-NLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSF 113
E+ L+++ ++ V P L SL YLS++E G +P G+ L L LS
Sbjct: 244 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 114 TKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSL 172
F G +PP G+ + LE LS N FSGELP +L K+ LK D+S G++P SL
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 70 VSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNL 127
SPT N S+++L +S L GY+PK + GS+ L L L G IP +G+L
Sbjct: 621 TSPTFDNNGSMMFLDMSY---NMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169
L LS N G +P ++ L L D+S+ N+ G IP
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 109 LRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKI 168
L +S+ G IP +G++ L L N SG +P +G L L D+SS + G+I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 169 PTSL 172
P ++
Sbjct: 694 PQAM 697
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 57 IEIYLIDV-DTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSF 113
+E ++D D + + L+N ++L ++S+S + L G +PK G L L L+LS
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLS---NNRLTGEIPK-WIGRLENLAILKLSN 520
Query: 114 TKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGK 150
F G IP LG+ +L L+ N F+G +P ++ K
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 82/198 (41%), Gaps = 60/198 (30%)
Query: 27 LGVLDLSYNHFAFKLQKSGLSNLAKKL-----------------------TNLIEIYLID 63
L VLDLS+N F+ +L +S L+NL+ L L E+YL +
Sbjct: 345 LKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 64 VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL------------------ 105
+ + PTL+N S L+ L +S F YL + SL
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLS-------FNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 106 -----------LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL 154
LE L L F G+IP L N TNL LS+N +GE+P +G+L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 155 KTFDISSCNILGKIPTSL 172
+S+ + G IP L
Sbjct: 517 AILKLSNNSFSGNIPAEL 534
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 12 GVETSNISRVARALQLGVLDLSYNHFA----FKLQKSGLSNL-----------AKKLTNL 56
G + S V+R + L LD+S N+F+ F S L +L ++ ++
Sbjct: 187 GNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 57 IEIYLIDVDTSSAVSPTLT-NLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSF 113
E+ L+++ ++ V P L SL YLS++E G +P G+ L L LS
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAE---NKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 114 TKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSL 172
F G +PP G+ + LE LS N FSGELP +L K+ LK D+S G++P SL
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 70 VSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSFTKFLGKIPPSLGNL 127
SPT N S+++L +S L GY+PK + GS+ L L L G IP +G+L
Sbjct: 624 TSPTFDNNGSMMFLDMSY---NMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169
L LS N G +P ++ L L D+S+ N+ G IP
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 109 LRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKI 168
L +S+ G IP +G++ L L N SG +P +G L L D+SS + G+I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 169 PTSL 172
P ++
Sbjct: 697 PQAM 700
Score = 33.1 bits (74), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 57 IEIYLIDV-DTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL--LEDLRLSF 113
+E ++D D + + L+N ++L ++S+S + L G +PK G L L L+LS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLS---NNRLTGEIPK-WIGRLENLAILKLSN 523
Query: 114 TKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGK 150
F G IP LG+ +L L+ N F+G +P ++ K
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 116 FLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172
+G IPP++ LT L Y++ SG +P L ++ +L T D S + G +P S+
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 52 KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRL 111
KLT L +Y+ + S A+ L+ + +L+ L
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD--------------------------F 132
Query: 112 SFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKT-FDISSCNILGKIPT 170
S+ G +PPS+ +L NL N SG +P S G + L T IS + GKIP
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192
Query: 171 SL 172
+
Sbjct: 193 TF 194
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 29/142 (20%)
Query: 38 AFKLQKSGLSNLAKKLTNLIEIYLIDVDTS--SAVSPTLTNLSSLIYLSISECSSQDLFG 95
+ +L+ +G+ +L + NL + + + S SA+ P + +L L L + C++
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA----- 241
Query: 96 YLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLK 155
L PP G L+ L D LP + +L L+
Sbjct: 242 ---------------------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280
Query: 156 TFDISSCNILGKIPTSLLIRLP 177
D+ C L ++P SL+ +LP
Sbjct: 281 KLDLRGCVNLSRLP-SLIAQLP 301
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 5 KINEQDF-GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLID 63
KI E + G N+S +A + LDL+ +GLSNL ++ +D
Sbjct: 92 KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL--------QVLYLD 143
Query: 64 VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPS 123
++ + +SP L L++L YLSI DL S+ L LR K + I P
Sbjct: 144 LNQITNISP-LAGLTNLQYLSIGNNQVNDLTPLANLSK----LTTLRADDNK-ISDISP- 196
Query: 124 LGNLTNLEDRYLSDNGFSGELP 145
L +L NL + +L DN S P
Sbjct: 197 LASLPNLIEVHLKDNQISDVSP 218
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 5 KINEQDF-GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLID 63
KI E + G N+S +A + LDL+ +GLSNL ++ +D
Sbjct: 86 KITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL--------QVLYLD 137
Query: 64 VDTSSAVSPTLTNLSSLIYLSISECSSQDL 93
++ + +SP L L++L YLSI DL
Sbjct: 138 LNQITNISP-LAGLTNLQYLSIGNAQVSDL 166
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFL 117
+ ++ + DL+ +L Q G+L +++ +F+KFL
Sbjct: 104 IKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFL 138
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFL 117
+ ++ + DL+ +L Q G+L +++ +F+KFL
Sbjct: 104 IKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFL 138
>pdb|3KOR|A Chain A, Crystal Structure Of A Putative Trp Repressor From
Staphylococcus Aureus
pdb|3KOR|B Chain B, Crystal Structure Of A Putative Trp Repressor From
Staphylococcus Aureus
pdb|3KOR|C Chain C, Crystal Structure Of A Putative Trp Repressor From
Staphylococcus Aureus
pdb|3KOR|D Chain D, Crystal Structure Of A Putative Trp Repressor From
Staphylococcus Aureus
Length = 119
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 8 EQDFGVETSNISRVARALQLG 28
EQ+ G T+ ISRV R+LQ G
Sbjct: 82 EQESGASTATISRVKRSLQWG 102
>pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|B Chain B, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|C Chain C, M. Smegmatis Arylamine N-Acetyl Transferase
pdb|1GX3|D Chain D, M. Smegmatis Arylamine N-Acetyl Transferase
Length = 284
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 76 NLSSLIYLSISECSSQDLFGYLPKSQKGS-----------LLEDLRLSFTKFLGKI---- 120
NL L+ + +++ S++ LF L ++G +LE+L + G++
Sbjct: 49 NLDPLLGIPVADLSAEALFAKLVDRRRGGYCYEHNGLLGYVLEELGFEVERLSGRVVWMR 108
Query: 121 ------PPSLGNLTNL-----EDRYLSDNGFSGELPTSLGKLNS 153
P N+ ++ + RYL D GF G+ TS +L +
Sbjct: 109 ADDAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQTLTSPIRLEA 152
>pdb|1W5R|A Chain A, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
pdb|1W5R|B Chain B, X-Ray Crystallographic Strcuture Of A C70q Mycobacterium
Smegmatis N-Arylamine Acetyltransferase
Length = 278
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 76 NLSSLIYLSISECSSQDLFGYLPKSQKGS-----------LLEDLRLSFTKFLGKI---- 120
NL L+ + +++ S++ LF L ++G +LE+L + G++
Sbjct: 43 NLDPLLGIPVADLSAEALFAKLVDRRRGGYQYEHNGLLGYVLEELGFEVERLSGRVVWMR 102
Query: 121 ------PPSLGNLTNL-----EDRYLSDNGFSGELPTSLGKLNS 153
P N+ ++ + RYL D GF G+ TS +L +
Sbjct: 103 ADDAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQTLTSPIRLEA 146
>pdb|1W6F|A Chain A, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|B Chain B, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|C Chain C, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site.
pdb|1W6F|D Chain D, Arylamine N-Acetyltransferase From Mycobacterium Smegmatis
With The Anti-Tubercular Drug Isoniazid Bound In The
Active Site
Length = 278
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 76 NLSSLIYLSISECSSQDLFGYLPKSQKGS-----------LLEDLRLSFTKFLGKI---- 120
NL L+ + +++ S++ LF L ++G +LE+L + G++
Sbjct: 43 NLDPLLGIPVADLSAEALFAKLVDRRRGGYCYEHNGLLGYVLEELGFEVERLSGRVVWMR 102
Query: 121 ------PPSLGNLTNL-----EDRYLSDNGFSGELPTSLGKLNS 153
P N+ ++ + RYL D GF G+ TS +L +
Sbjct: 103 ADDAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQTLTSPIRLEA 146
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 41 LQKSGLSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSSLIYLSISEC----------- 88
LQKS LS L ++ NL+ + L D V + L+ L +LS+S C
Sbjct: 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268
Query: 89 ------SSQDLFGYLPKSQKGSLLE---DLRLSFTKFLGKIPPSLGNLTNLE 131
+ +FG +P L E L+++ + F P++GN N E
Sbjct: 269 GEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQE 320
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85
QL +LD+++ H K S NL L ++ + +DTS+ L L L +L++
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNL--HLLRVLNLSHCLLDTSN--QHLLAGLQDLRHLNL 455
Query: 86 SECSSQDLFGYLPKS---QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142
S QD G + K+ Q LE L LS L + L N+ LS N +G
Sbjct: 456 QGNSFQD--GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
Query: 143 ELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186
+ +L L L +++S NI IP LL L + LS P
Sbjct: 514 DSMDALSHLKGLY-LNMASNNI-RIIPPHLLPALSQQSIINLSHNP 557
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,776,383
Number of Sequences: 62578
Number of extensions: 176247
Number of successful extensions: 324
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 54
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)