Query 038090
Match_columns 186
No_of_seqs 106 out of 1579
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 07:27:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.5E-21 5.3E-26 167.6 11.8 162 3-172 142-304 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.7E-21 8E-26 166.5 11.6 163 2-172 165-328 (968)
3 KOG0617 Ras suppressor protein 99.8 3.8E-22 8.3E-27 136.0 -2.0 159 3-174 35-194 (264)
4 KOG4194 Membrane glycoprotein 99.7 3.3E-17 7.2E-22 129.8 3.1 167 3-177 175-341 (873)
5 KOG0444 Cytoskeletal regulator 99.6 1.6E-17 3.4E-22 133.0 -1.0 162 5-178 130-292 (1255)
6 KOG4194 Membrane glycoprotein 99.6 6E-17 1.3E-21 128.4 1.8 170 2-179 198-367 (873)
7 KOG0472 Leucine-rich repeat pr 99.6 1.6E-17 3.5E-22 126.5 -3.3 155 18-186 153-308 (565)
8 KOG0444 Cytoskeletal regulator 99.6 1.1E-16 2.4E-21 128.2 -1.4 170 3-186 199-373 (1255)
9 KOG0617 Ras suppressor protein 99.6 1.4E-16 3E-21 109.0 -2.0 143 19-174 27-171 (264)
10 KOG4237 Extracellular matrix p 99.5 1.3E-15 2.8E-20 115.8 -1.1 167 4-177 70-346 (498)
11 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-14 4.8E-19 109.8 2.6 117 49-165 160-291 (319)
12 KOG0472 Leucine-rich repeat pr 99.5 8.3E-15 1.8E-19 111.9 0.1 121 43-171 424-545 (565)
13 cd00116 LRR_RI Leucine-rich re 99.5 4.4E-14 9.4E-19 108.2 3.6 163 2-165 82-263 (319)
14 PLN03210 Resistant to P. syrin 99.4 6.1E-13 1.3E-17 117.1 10.7 45 128-172 778-822 (1153)
15 PLN03210 Resistant to P. syrin 99.4 2.6E-12 5.7E-17 113.2 11.8 79 2-87 635-713 (1153)
16 PRK15370 E3 ubiquitin-protein 99.3 9.5E-12 2.1E-16 104.5 10.7 61 105-172 326-386 (754)
17 PRK15387 E3 ubiquitin-protein 99.3 8.7E-12 1.9E-16 104.6 10.1 42 130-172 424-465 (788)
18 PRK15387 E3 ubiquitin-protein 99.3 1.9E-11 4E-16 102.7 9.4 73 104-186 382-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.3 4.6E-11 9.9E-16 100.5 11.6 147 2-173 200-366 (754)
20 KOG0532 Leucine-rich repeat (L 99.3 2.1E-13 4.6E-18 108.1 -2.2 153 5-174 102-255 (722)
21 PLN03150 hypothetical protein; 99.3 2.5E-11 5.5E-16 100.8 8.6 104 56-162 420-525 (623)
22 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 86.6 5.2 107 23-141 17-126 (175)
23 KOG0618 Serine/threonine phosp 99.2 9E-13 1.9E-17 109.5 -0.3 159 2-165 242-443 (1081)
24 KOG0532 Leucine-rich repeat (L 99.2 6.9E-13 1.5E-17 105.3 -1.4 165 5-186 79-245 (722)
25 PLN03150 hypothetical protein; 99.2 2.7E-11 5.9E-16 100.6 7.4 93 80-175 420-513 (623)
26 KOG0618 Serine/threonine phosp 99.2 1.5E-12 3.2E-17 108.3 -2.1 128 24-163 358-487 (1081)
27 COG4886 Leucine-rich repeat (L 99.1 6.1E-11 1.3E-15 93.7 4.3 154 2-170 141-295 (394)
28 PF14580 LRR_9: Leucine-rich r 99.1 9.6E-11 2.1E-15 81.9 3.8 127 51-185 16-148 (175)
29 KOG3207 Beta-tubulin folding c 99.0 5.1E-11 1.1E-15 92.1 0.5 162 2-169 122-317 (505)
30 KOG1259 Nischarin, modulator o 99.0 3.4E-11 7.3E-16 89.5 -1.1 132 23-169 282-415 (490)
31 COG4886 Leucine-rich repeat (L 99.0 2.3E-10 4.9E-15 90.4 3.1 153 3-170 118-272 (394)
32 KOG4237 Extracellular matrix p 99.0 5.4E-10 1.2E-14 85.6 4.3 111 2-117 275-399 (498)
33 KOG1909 Ran GTPase-activating 99.0 2.1E-10 4.5E-15 86.5 1.6 150 22-172 89-261 (382)
34 KOG1909 Ran GTPase-activating 98.9 3.6E-10 7.8E-15 85.2 1.2 163 2-166 93-284 (382)
35 PF13855 LRR_8: Leucine rich r 98.9 1.1E-09 2.4E-14 63.4 3.0 61 104-164 1-61 (61)
36 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.9E-14 62.5 2.9 40 49-88 20-59 (61)
37 KOG1259 Nischarin, modulator o 98.8 5.5E-10 1.2E-14 83.2 -0.5 127 3-142 286-413 (490)
38 COG5238 RNA1 Ran GTPase-activa 98.8 4.8E-09 1E-13 77.1 2.6 150 20-174 87-264 (388)
39 KOG3207 Beta-tubulin folding c 98.7 6.8E-09 1.5E-13 80.6 3.3 158 2-165 173-339 (505)
40 KOG4579 Leucine-rich repeat (L 98.6 2.2E-09 4.7E-14 71.2 -2.1 139 23-170 25-164 (177)
41 KOG3665 ZYG-1-like serine/thre 98.6 3E-08 6.4E-13 83.1 3.1 151 25-182 122-280 (699)
42 KOG4579 Leucine-rich repeat (L 98.5 5.7E-09 1.2E-13 69.3 -2.8 124 54-185 27-156 (177)
43 KOG2120 SCF ubiquitin ligase, 98.5 9.6E-09 2.1E-13 76.5 -2.0 155 3-162 212-373 (419)
44 PF12799 LRR_4: Leucine Rich r 98.5 2.2E-07 4.9E-12 49.8 3.5 37 128-165 1-37 (44)
45 KOG4658 Apoptotic ATPase [Sign 98.5 9E-08 2E-12 82.2 3.0 153 3-165 547-730 (889)
46 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.4E-13 84.1 -4.4 86 73-165 182-267 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 1.1E-06 2.3E-11 65.0 6.0 175 2-179 31-241 (388)
48 KOG0531 Protein phosphatase 1, 98.3 1.5E-07 3.2E-12 75.0 0.9 129 23-165 70-199 (414)
49 KOG4658 Apoptotic ATPase [Sign 98.3 3.9E-07 8.5E-12 78.4 3.0 148 4-160 526-676 (889)
50 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 83.2 -5.9 130 26-169 165-295 (1096)
51 KOG0531 Protein phosphatase 1, 98.3 1E-07 2.2E-12 75.9 -1.5 108 21-141 91-199 (414)
52 KOG2120 SCF ubiquitin ligase, 98.2 2.8E-08 6E-13 74.1 -5.4 171 3-182 187-368 (419)
53 KOG3665 ZYG-1-like serine/thre 98.2 1.2E-06 2.7E-11 73.6 3.4 135 2-143 123-265 (699)
54 PF12799 LRR_4: Leucine Rich r 98.1 3.4E-06 7.5E-11 45.2 3.3 37 104-141 1-37 (44)
55 KOG2982 Uncharacterized conser 98.0 2.3E-06 5.1E-11 64.0 1.3 38 128-166 224-263 (418)
56 PRK15386 type III secretion pr 98.0 5E-05 1.1E-09 59.9 8.3 55 23-88 50-104 (426)
57 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.7E-10 56.2 3.8 109 24-140 41-152 (233)
58 KOG2739 Leucine-rich acidic nu 97.8 3E-05 6.6E-10 56.8 4.1 110 46-158 35-149 (260)
59 KOG1644 U2-associated snRNP A' 97.8 3.7E-05 8E-10 54.6 4.1 102 54-160 42-148 (233)
60 PRK15386 type III secretion pr 97.8 0.00014 3E-09 57.5 7.5 70 2-88 53-122 (426)
61 KOG2982 Uncharacterized conser 97.6 3.9E-05 8.6E-10 57.6 2.6 170 6-181 50-253 (418)
62 KOG2739 Leucine-rich acidic nu 97.5 4.9E-05 1.1E-09 55.8 2.3 110 70-184 35-150 (260)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00042 9E-09 45.8 5.3 106 20-137 7-112 (129)
64 KOG4341 F-box protein containi 97.3 0.00021 4.6E-09 55.9 3.1 175 3-181 270-456 (483)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0018 3.9E-08 42.7 5.7 120 49-178 7-127 (129)
66 KOG2123 Uncharacterized conser 97.0 3.3E-05 7.2E-10 57.5 -3.6 100 53-158 18-123 (388)
67 KOG2123 Uncharacterized conser 96.5 0.00042 9.2E-09 51.8 -1.1 76 3-88 21-98 (388)
68 KOG1947 Leucine rich repeat pr 96.4 0.00049 1.1E-08 55.6 -1.4 175 2-179 189-389 (482)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0014 3E-08 29.4 0.6 20 153-173 1-20 (22)
70 KOG1947 Leucine rich repeat pr 96.1 0.0026 5.6E-08 51.4 1.3 112 53-164 187-307 (482)
71 PF13504 LRR_7: Leucine rich r 96.0 0.0042 9.2E-08 25.9 1.2 16 153-169 2-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.8 0.0048 1E-07 27.5 1.1 19 56-75 2-20 (22)
73 smart00369 LRR_TYP Leucine-ric 95.6 0.011 2.4E-07 27.4 2.0 22 151-173 1-22 (26)
74 smart00370 LRR Leucine-rich re 95.6 0.011 2.4E-07 27.4 2.0 22 151-173 1-22 (26)
75 PF13516 LRR_6: Leucine Rich r 95.3 0.0088 1.9E-07 27.2 1.0 23 151-173 1-23 (24)
76 KOG4308 LRR-containing protein 94.4 0.00038 8.2E-09 56.5 -8.3 169 3-172 89-282 (478)
77 KOG4341 F-box protein containi 94.3 0.019 4E-07 45.4 0.9 155 2-159 295-459 (483)
78 KOG3864 Uncharacterized conser 93.9 0.0093 2E-07 42.6 -1.1 81 26-113 102-185 (221)
79 KOG4308 LRR-containing protein 93.9 0.00054 1.2E-08 55.6 -8.3 168 2-170 116-308 (478)
80 KOG0473 Leucine-rich repeat pr 91.2 0.0034 7.3E-08 46.0 -6.4 88 73-165 37-124 (326)
81 smart00364 LRR_BAC Leucine-ric 90.6 0.17 3.7E-06 23.5 1.2 18 152-170 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 90.0 0.019 4.1E-07 42.2 -3.4 77 6-90 47-123 (326)
83 smart00368 LRR_RI Leucine rich 89.4 0.27 5.8E-06 23.2 1.4 21 152-172 2-22 (28)
84 KOG3864 Uncharacterized conser 88.8 0.072 1.6E-06 38.2 -1.2 82 55-138 102-186 (221)
85 smart00365 LRR_SD22 Leucine-ri 83.5 0.99 2.2E-05 21.0 1.5 14 152-165 2-15 (26)
86 KOG3763 mRNA export factor TAP 80.9 1.2 2.5E-05 36.9 2.0 82 104-185 218-309 (585)
87 smart00367 LRR_CC Leucine-rich 77.1 1.4 3E-05 20.1 0.9 14 152-165 2-16 (26)
88 KOG3763 mRNA export factor TAP 64.2 3.4 7.3E-05 34.3 1.0 61 5-68 222-284 (585)
89 TIGR00864 PCC polycystin catio 30.8 51 0.0011 33.4 3.1 33 7-39 1-33 (2740)
90 TIGR00864 PCC polycystin catio 27.4 44 0.00095 33.8 2.1 16 100-115 15-30 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.5e-21 Score=167.55 Aligned_cols=162 Identities=27% Similarity=0.364 Sum_probs=92.4
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|++++|.+....+..+..+++|+.|++++|. + .+.+|..+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV--L---VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCc--c---cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 4555555555544445556666666666666666 3 4455555666666666666666655555556666666666
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
|++++| ...+.+|. +..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 217 L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 217 IYLGYN---NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EECcCC---ccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 666666 33444454 55555566666665555555555555555555555555555545555555555555555555
Q ss_pred CcccccCChhH
Q 038090 162 CNILGKIPTSL 172 (186)
Q Consensus 162 n~~~~~~p~~~ 172 (186)
|.+.+.+|..+
T Consensus 294 n~l~~~~p~~~ 304 (968)
T PLN00113 294 NSLSGEIPELV 304 (968)
T ss_pred CeeccCCChhH
Confidence 55554444444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=3.7e-21 Score=166.47 Aligned_cols=163 Identities=28% Similarity=0.309 Sum_probs=104.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+....+..+.++++|++|++++|. + .+.+|..+..+.+|++|++++|.+.+..|..++.+++|+
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ--L---VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCC--C---cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 57778888887766667777788888888888877 4 556666777777777777777777666666777777777
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++| ...+.+|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 240 ~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 240 HLDLVYN---NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred EEECcCc---eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 7777777 33444555 5566666666666666555555555555555555555555555555555555555555555
Q ss_pred CCcccccCChhH
Q 038090 161 SCNILGKIPTSL 172 (186)
Q Consensus 161 ~n~~~~~~p~~~ 172 (186)
+|.+.+.+|..+
T Consensus 317 ~n~~~~~~~~~~ 328 (968)
T PLN00113 317 SNNFTGKIPVAL 328 (968)
T ss_pred CCccCCcCChhH
Confidence 555554444444
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.82 E-value=3.8e-22 Score=136.03 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=143.3
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
.++|.++++.++ ..++.|+.+.+|+.|++++|+ ....|..+..+++|+.|.+..|.+. ..|..|+.++.|+.
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 467889999886 448899999999999999999 6789999999999999999999877 68999999999999
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
||+++|.+. ...+|. +-.++.|+.|++++|.+. .+|..++++++|+.|.+..|.+. .+|.+++.+..|++|++.+
T Consensus 107 ldltynnl~--e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 107 LDLTYNNLN--ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhccccccc--cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 999999432 235677 888899999999999998 78999999999999999999998 8999999999999999999
Q ss_pred CcccccCChhHHH
Q 038090 162 CNILGKIPTSLLI 174 (186)
Q Consensus 162 n~~~~~~p~~~~~ 174 (186)
|+++ .+|+++++
T Consensus 183 nrl~-vlppel~~ 194 (264)
T KOG0617|consen 183 NRLT-VLPPELAN 194 (264)
T ss_pred ceee-ecChhhhh
Confidence 9998 99998874
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=3.3e-17 Score=129.85 Aligned_cols=167 Identities=22% Similarity=0.115 Sum_probs=97.8
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
+++|++++|.|++.....|..+.+|..|.|+.|. + ..-.+..|+.+++|+.|++..|.+.-.-.-.|.++++|+.
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr--i---ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR--I---TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCc--c---cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 4556666666665555566666666666666666 2 2222234555666666666666554322345555666666
Q ss_pred EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
|.+.+|.+....+.. +..+..++.|++..|++...-.+++..++.|++|+++.|.+....+++|+.+++|+.|++++|
T Consensus 250 lklqrN~I~kL~DG~--Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGA--FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhcCcccccCcc--eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 666665433221111 556666667777776666555566666777777777777776545566666777777777777
Q ss_pred cccccCChhHHHhCC
Q 038090 163 NILGKIPTSLLIRLP 177 (186)
Q Consensus 163 ~~~~~~p~~~~~~l~ 177 (186)
+++ ++++.-++.+.
T Consensus 328 ~i~-~l~~~sf~~L~ 341 (873)
T KOG4194|consen 328 RIT-RLDEGSFRVLS 341 (873)
T ss_pred ccc-cCChhHHHHHH
Confidence 776 66655444443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=1.6e-17 Score=133.04 Aligned_cols=162 Identities=25% Similarity=0.269 Sum_probs=115.9
Q ss_pred ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090 5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84 (186)
Q Consensus 5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 84 (186)
.|++++|+|.++.-+.+.++..|-+||+|+|. .+.+|+....+..||+|.+++|++.-.--..+..|++|++|.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr------Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNR------LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccch------hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 56777777777766667788888888888887 456777777788888888888876532223455566667777
Q ss_pred eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCc
Q 038090 85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN 163 (186)
Q Consensus 85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 163 (186)
+++.+ .-...+|. +-.+.+|+.++++.|.+. .+|..+.++.+|+.|+|++|+++ ++....+.+.+|.+|+++.|+
T Consensus 204 ms~Tq--RTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 204 MSNTQ--RTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred ccccc--chhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence 76663 22345666 677777888888888776 77888888888888888888887 666666677778888888888
Q ss_pred ccccCChhHHHhCCC
Q 038090 164 ILGKIPTSLLIRLPP 178 (186)
Q Consensus 164 ~~~~~p~~~~~~l~~ 178 (186)
++ .+|..++ .++.
T Consensus 280 Lt-~LP~avc-KL~k 292 (1255)
T KOG0444|consen 280 LT-VLPDAVC-KLTK 292 (1255)
T ss_pred hc-cchHHHh-hhHH
Confidence 87 7777776 3443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.63 E-value=6e-17 Score=128.40 Aligned_cols=170 Identities=19% Similarity=0.110 Sum_probs=130.4
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|..|.++.|.++...+..|.++++|+.|||..|. + ....--.|.++++|+.|.+.+|++...-.+.|..|.+++
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--i---rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--I---RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccc--e---eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 56788999999998888899999999999999999 3 222234588999999999999998876677889999999
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|+++.|.++.+.... +..++.|+.|++++|.|.+..++.+..+++|+.|+|++|.+...-+..+..+..|++|+++.
T Consensus 273 ~l~L~~N~l~~vn~g~--lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGW--LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH 350 (873)
T ss_pred eeecccchhhhhhccc--ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc
Confidence 9999999665443321 55777788888888888777777777788888888888888733334466677777777777
Q ss_pred CcccccCChhHHHhCCCC
Q 038090 162 CNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 162 n~~~~~~p~~~~~~l~~~ 179 (186)
|.+. .+.+..+..+.++
T Consensus 351 Nsi~-~l~e~af~~lssL 367 (873)
T KOG4194|consen 351 NSID-HLAEGAFVGLSSL 367 (873)
T ss_pred cchH-HHHhhHHHHhhhh
Confidence 7776 6666665555544
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.61 E-value=1.6e-17 Score=126.49 Aligned_cols=155 Identities=25% Similarity=0.272 Sum_probs=111.3
Q ss_pred hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090 18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL 97 (186)
Q Consensus 18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 97 (186)
++.+..+.++..+++.+|. ..+.|+..-.++.|++|+...|-+. .+|+.++.+.+|..||+.+|.+ ..+
T Consensus 153 p~~~~~~~~l~~l~~~~n~------l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki----~~l 221 (565)
T KOG0472|consen 153 PEDMVNLSKLSKLDLEGNK------LKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKI----RFL 221 (565)
T ss_pred chHHHHHHHHHHhhccccc------hhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccc----ccC
Confidence 4444444555555555555 2333333333566666666666555 4566777777777777777743 345
Q ss_pred CCCCCCCcccEEEccCCcCCCCCCcccC-CCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhC
Q 038090 98 PKSQKGSLLEDLRLSFTKFLGKIPPSLG-NLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRL 176 (186)
Q Consensus 98 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l 176 (186)
|++..|..|.++.++.|.+. .+|.... .+..+.+||+..|+++ ++|+++..+++|.++|+++|.++ .+|.++++-+
T Consensus 222 Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlh 298 (565)
T KOG0472|consen 222 PEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLH 298 (565)
T ss_pred CCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccce
Confidence 56777777778878777776 4555444 7889999999999999 99999999999999999999999 9999999776
Q ss_pred CCCCCCCCCC
Q 038090 177 PPSVALSSTP 186 (186)
Q Consensus 177 ~~~~~l~~~~ 186 (186)
.....+-+||
T Consensus 299 L~~L~leGNP 308 (565)
T KOG0472|consen 299 LKFLALEGNP 308 (565)
T ss_pred eeehhhcCCc
Confidence 6778888887
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=1.1e-16 Score=128.21 Aligned_cols=170 Identities=21% Similarity=0.234 Sum_probs=120.2
Q ss_pred ccceeccccccc-CcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 3 QRKINEQDFGVE-TSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 3 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
|..|.+++.+-+ ...|..+..+.+|..+|+|.|+ ...+|+.+-.+++|+.|++++|.++ .+-...+...+|+
T Consensus 199 L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~------Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 199 LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN------LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLE 271 (1255)
T ss_pred hhhhhcccccchhhcCCCchhhhhhhhhccccccC------CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhh
Confidence 444555554322 3346666777777777777777 3456666777777777777777766 3444555666777
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
.|++++|+++ .+|+ +++++.|+.|++.+|++... +|..++++.+|+.++.++|.+. .+|+++..|..|+.|.+
T Consensus 272 tLNlSrNQLt----~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 272 TLNLSRNQLT----VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhccccchhc----cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 7777777432 4566 77788888888888876544 7788888888888888888888 88888888888999999
Q ss_pred cCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 160 SSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 160 ~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
++|++. .+|++|. -+|.+ .++..||
T Consensus 347 ~~NrLi-TLPeaIH-lL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIH-LLPDLKVLDLRENP 373 (1255)
T ss_pred ccccee-echhhhh-hcCCcceeeccCCc
Confidence 999887 8888886 45543 4555554
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.4e-16 Score=108.99 Aligned_cols=143 Identities=23% Similarity=0.342 Sum_probs=127.2
Q ss_pred hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090 19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP 98 (186)
Q Consensus 19 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 98 (186)
+.+..+.+++.|-+|+|. ...+|+.+..+.+|+.|.+++|+++ .+|.+++.+++|+.|+++.|.+ ..+|
T Consensus 27 ~gLf~~s~ITrLtLSHNK------l~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl----~~lp 95 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNK------LTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL----NILP 95 (264)
T ss_pred ccccchhhhhhhhcccCc------eeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh----hcCc
Confidence 345678899999999999 4567778899999999999999988 5888999999999999999853 3557
Q ss_pred C-CCCCCcccEEEccCCcCC-CCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHH
Q 038090 99 K-SQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLI 174 (186)
Q Consensus 99 ~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~ 174 (186)
. ++..+.|+.||+.+|++. ..+|..|..++.|+.|+++.|.++ .+|..++++++|+.|.+..|.+. ++|++++.
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 7 999999999999998874 458999999999999999999999 89999999999999999999998 99999973
No 10
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.3e-15 Score=115.84 Aligned_cols=167 Identities=20% Similarity=0.155 Sum_probs=116.6
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecc-ccCCCCcccccCCCCCCCe
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~ 82 (186)
..+.|..|+|+.+.+.+|..+++|+.||||+|+ + ...-|..|.++.++..|-+.+ |+++......|.++.+++.
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--I---s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--I---SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccc--h---hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 356777788887777788888888888888888 4 445566777777777777766 6665444445666666666
Q ss_pred Eeecccccc-----------------------------------------------------------------------
Q 038090 83 LSISECSSQ----------------------------------------------------------------------- 91 (186)
Q Consensus 83 L~l~~~~l~----------------------------------------------------------------------- 91 (186)
|.+.-|.+.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 655555444
Q ss_pred -----------------------------------ccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEE
Q 038090 92 -----------------------------------DLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY 134 (186)
Q Consensus 92 -----------------------------------~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 134 (186)
......|. +..+++|+.|++++|.+++.-+.+|.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 11122333 56778888888888888877778888888888888
Q ss_pred cCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCChhHHHhCC
Q 038090 135 LSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177 (186)
Q Consensus 135 L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~ 177 (186)
|..|+++ .+. ..|..+..|++|++.+|+|+ .+....++.+-
T Consensus 305 L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~ 346 (498)
T KOG4237|consen 305 LTRNKLE-FVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLF 346 (498)
T ss_pred cCcchHH-HHHHHhhhccccceeeeecCCeeE-EEecccccccc
Confidence 8888888 443 34677888888999888888 55554444443
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.46 E-value=2.2e-14 Score=109.78 Aligned_cols=117 Identities=20% Similarity=0.137 Sum_probs=51.3
Q ss_pred HHHcCCccceEEeccccCCCC----cccccCCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCCCCc
Q 038090 49 LAKKLTNLIEIYLIDVDTSSA----VSPTLTNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGKIPP 122 (186)
Q Consensus 49 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~ 122 (186)
.+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.... ..+.. +..+++|+.|++++|.+.+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 334444555555555544421 1122333345555555555322110 01112 33445555555555555432111
Q ss_pred ccC-----CCCCCCEEEcCCCcCCC----CCchhhhccCCCCEEeccCCccc
Q 038090 123 SLG-----NLTNLEDRYLSDNGFSG----ELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 123 ~~~-----~l~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
.+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 111 12455666666655542 12223344455666666666665
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=8.3e-15 Score=111.88 Aligned_cols=121 Identities=22% Similarity=0.253 Sum_probs=101.5
Q ss_pred ccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCC
Q 038090 43 KSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIP 121 (186)
Q Consensus 43 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 121 (186)
.+.+|..++.+++|..|++++|.+. .+|..++.+..||.++++.|+ +.++|. +...+.++.+-.++|++....+
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~Nr----Fr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNR----FRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccc----cccchHHHhhHHHHHHHHhccccccccCh
Confidence 4556777888999999999999877 578889999999999999984 456677 5566667777667788886666
Q ss_pred cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChh
Q 038090 122 PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS 171 (186)
Q Consensus 122 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~ 171 (186)
..++.|.+|..||+.+|.+. .+|+.+++|.+|++|.+++|+|. +|.+
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 77999999999999999999 89999999999999999999996 4543
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.45 E-value=4.4e-14 Score=108.18 Aligned_cols=163 Identities=21% Similarity=0.174 Sum_probs=77.8
Q ss_pred CccceecccccccCcChhhHHhhcc---cCeeeCCCCCccccccccchhHHHHcC-CccceEEeccccCCCC----cccc
Q 038090 2 SQRKINEQDFGVETSNISRVARALQ---LGVLDLSYNHFAFKLQKSGLSNLAKKL-TNLIEIYLIDVDTSSA----VSPT 73 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~ 73 (186)
+|++|++++|.+....+..+..+.. |+.|++++|.+.. .....+...+..+ ++|+.|++++|.+++. ....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD-RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch-HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 4555566655554333444444444 6666666665210 0001122333444 5666666666655521 1223
Q ss_pred cCCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCCCchh
Q 038090 74 LTNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGELPTS 147 (186)
Q Consensus 74 ~~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 147 (186)
+..+..|++|++++|.+.... ..++. +...++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 444555666666666332100 01112 23334666666666655422 2233445566666666666665322222
Q ss_pred hh-c----cCCCCEEeccCCccc
Q 038090 148 LG-K----LNSLKTFDISSCNIL 165 (186)
Q Consensus 148 ~~-~----~~~L~~l~l~~n~~~ 165 (186)
+. . .+.|+++++++|.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCC
Confidence 21 1 256666666666665
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.45 E-value=6.1e-13 Score=117.15 Aligned_cols=45 Identities=33% Similarity=0.538 Sum_probs=29.3
Q ss_pred CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 356666666665555677777777777777777764334666544
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.40 E-value=2.6e-12 Score=113.20 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=39.8
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|+++++..... .+.++.+++|+.|++++|. . ...+|..+..+.+|+.|++++|.....+|..+ .+++|+
T Consensus 635 ~Lk~L~Ls~~~~l~~-ip~ls~l~~Le~L~L~~c~--~---L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 635 GLRNIDLRGSKNLKE-IPDLSMATNLETLKLSDCS--S---LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCCEEECCCCCCcCc-CCccccCCcccEEEecCCC--C---ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 455666665532222 2235556666666666665 2 34455556666666666666554333334332 334444
Q ss_pred eEeecc
Q 038090 82 YLSISE 87 (186)
Q Consensus 82 ~L~l~~ 87 (186)
+|++++
T Consensus 708 ~L~Lsg 713 (1153)
T PLN03210 708 RLNLSG 713 (1153)
T ss_pred EEeCCC
Confidence 444433
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=9.5e-12 Score=104.51 Aligned_cols=61 Identities=26% Similarity=0.395 Sum_probs=33.2
Q ss_pred cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090 105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
+|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.++ .+|..+
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l 386 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENL 386 (754)
T ss_pred cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhH
Confidence 4555555555554 3443332 45666666666665 4554442 45666666666665 555544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=8.7e-12 Score=104.60 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=20.9
Q ss_pred CCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090 130 LEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 130 L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
|+.|++++|+++ .+|..+..+++|+.+++++|++++..|..+
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 333444444444 445455555555555555555555444444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.28 E-value=1.9e-11 Score=102.66 Aligned_cols=73 Identities=25% Similarity=0.424 Sum_probs=56.8
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCC--CCC
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP--SVA 181 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~--~~~ 181 (186)
.+|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..++ .++. .+.
T Consensus 382 ~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~-~L~~L~~Ld 451 (788)
T PRK15387 382 SGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLI-HLSSETTVN 451 (788)
T ss_pred cccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHh-hccCCCeEE
Confidence 36888899888887 45543 367999999999998 67753 346889999999998 9999887 4554 467
Q ss_pred CCCCC
Q 038090 182 LSSTP 186 (186)
Q Consensus 182 l~~~~ 186 (186)
+++||
T Consensus 452 Ls~N~ 456 (788)
T PRK15387 452 LEGNP 456 (788)
T ss_pred CCCCC
Confidence 77776
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=4.6e-11 Score=100.48 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=79.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|++++|.++.. +..+ ..+|+.|++++|. + ..+|..+. .+|+.|++++|.+. .+|..+. .+|+
T Consensus 200 ~L~~L~Ls~N~LtsL-P~~l--~~nL~~L~Ls~N~--L----tsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~ 265 (754)
T PRK15370 200 QITTLILDNNELKSL-PENL--QGNIKTLYANSNQ--L----TSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQ 265 (754)
T ss_pred CCcEEEecCCCCCcC-Chhh--ccCCCEEECCCCc--c----ccCChhhh--ccccEEECcCCccC-cCChhHh--CCCC
Confidence 355666666666533 2322 2466666666666 2 23333322 34555566655554 2333332 3455
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccC-------------------CCCCCCEEEcCCCcCC
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLG-------------------NLTNLEDRYLSDNGFS 141 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-------------------~l~~L~~L~L~~n~~~ 141 (186)
+|++++|.+. .+|. +. .+|+.|++++|.+. .+|..+. ..++|+.|++++|.++
T Consensus 266 ~L~Ls~N~L~----~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 266 SLDLFHNKIS----CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT 338 (754)
T ss_pred EEECcCCccC----ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc
Confidence 6666555332 2232 21 24555555555544 2222111 1256777777777777
Q ss_pred CCCchhhhccCCCCEEeccCCcccccCChhHH
Q 038090 142 GELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 142 ~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
.+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 339 -~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp 366 (754)
T PRK15370 339 -SLPASLP--PELQVLDVSKNQIT-VLPETLP 366 (754)
T ss_pred -cCChhhc--CcccEEECCCCCCC-cCChhhc
Confidence 5665543 68889999999887 7777654
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=2.1e-13 Score=108.11 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=98.4
Q ss_pred ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090 5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84 (186)
Q Consensus 5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 84 (186)
.+.+.++.+..+ +..++.+..|+++||+.|+ ....|..+..++ |+.|.+++|++. .+|+.++....|..|+
T Consensus 102 ~liLy~n~~r~i-p~~i~~L~~lt~l~ls~Nq------lS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 102 SLILYHNCIRTI-PEAICNLEALTFLDLSSNQ------LSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHhccceec-chhhhhhhHHHHhhhccch------hhcCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhh
Confidence 344445544432 5666677777777777776 355555555555 667777777665 4566666666777777
Q ss_pred eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCc
Q 038090 85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN 163 (186)
Q Consensus 85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 163 (186)
.+.|.+ ..+|. ++.+.+|+.+.+.+|.+. .+|..+. .-.|..||++.|++. .+|..|.+|+.|++|-|.+|+
T Consensus 173 ~s~nei----~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 173 VSKNEI----QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred hhhhhh----hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCC
Confidence 777743 23344 666667777777777766 5566665 334677777777777 777777777777777777777
Q ss_pred ccccCChhHHH
Q 038090 164 ILGKIPTSLLI 174 (186)
Q Consensus 164 ~~~~~p~~~~~ 174 (186)
+. +-|..|+.
T Consensus 246 Lq-SPPAqIC~ 255 (722)
T KOG0532|consen 246 LQ-SPPAQICE 255 (722)
T ss_pred CC-CChHHHHh
Confidence 76 66666653
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=2.5e-11 Score=100.81 Aligned_cols=104 Identities=28% Similarity=0.399 Sum_probs=51.1
Q ss_pred cceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEE
Q 038090 56 LIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY 134 (186)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 134 (186)
++.|++++|.+.+..|..++.+++|+.|++++| .+.+.+|. ++.+++|+.|++++|.+.+.+|..++.+++|++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N---~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN---SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC---cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 444455555555444545555555555555555 33344444 44555555555555555544555555555555555
Q ss_pred cCCCcCCCCCchhhhcc-CCCCEEeccCC
Q 038090 135 LSDNGFSGELPTSLGKL-NSLKTFDISSC 162 (186)
Q Consensus 135 L~~n~~~~~~~~~~~~~-~~L~~l~l~~n 162 (186)
+++|.+.+.+|..++.. .++..+++.+|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCC
Confidence 55555555555444332 23444444444
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.24 E-value=1.1e-11 Score=86.61 Aligned_cols=107 Identities=21% Similarity=0.165 Sum_probs=23.5
Q ss_pred hhcccCeeeCCCCCccccccccchhHHHH-cCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCC-
Q 038090 23 RALQLGVLDLSYNHFAFKLQKSGLSNLAK-KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS- 100 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~- 100 (186)
++.++++|++++|. + ..+. .+. .+.+|+.|++++|.+... +.+..++.|+.|++++|.++.... .+
T Consensus 17 n~~~~~~L~L~~n~--I----~~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~---~l~ 84 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ--I----STIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE---GLD 84 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH---HHH
T ss_pred cccccccccccccc--c----cccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc---chH
Confidence 34445556666665 2 2221 122 345555556655555532 234445555555555553332211 01
Q ss_pred CCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCC
Q 038090 101 QKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~ 141 (186)
..+++|+.|++++|.+... .-..+..+++|++|++.+|.+.
T Consensus 85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 1344555555555554321 1123334455555555555554
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=9e-13 Score=109.48 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=94.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccc-----------------cccccchhHHHHcCCccceEEeccc
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAF-----------------KLQKSGLSNLAKKLTNLIEIYLIDV 64 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~~~~~~~l~~L~~L~l~~~ 64 (186)
.|.+++++++.+... +.++..|.+|+.++..+|.+.- .-....+|+...++.+|++|++..|
T Consensus 242 nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcc-hHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 356677777776644 4777888888888888877300 0001224445555678888888877
Q ss_pred cCCCCcccccCC-------------------------CCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCC
Q 038090 65 DTSSAVSPTLTN-------------------------LSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK 119 (186)
Q Consensus 65 ~~~~~~~~~~~~-------------------------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 119 (186)
++...++..+.. ++.|+.|++.+|.++ ...+|-+.+..+|+.|.+++|.+. .
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt--d~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT--DSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc--ccchhhhccccceeeeeecccccc-c
Confidence 665322211111 233566666666432 234444677778888888888776 4
Q ss_pred CC-cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 120 IP-PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 120 ~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+| ..+.++..|++|+|++|+++ .+|..+..++.|++|...+|++.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 55 34567777888888888777 55544444444444444444444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=6.9e-13 Score=105.26 Aligned_cols=165 Identities=23% Similarity=0.223 Sum_probs=138.2
Q ss_pred ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090 5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84 (186)
Q Consensus 5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 84 (186)
..+++.+.+.. .+..++.+..|+.+.+..|. ...+|+.+..+..|..|+++.|.++ ..|..++.++ |+.|-
T Consensus 79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~------~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 79 FADLSRNRFSE-LPEEACAFVSLESLILYHNC------IRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhcccccccc-CchHHHHHHHHHHHHHHhcc------ceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 45777777654 47778999999999999998 6788889999999999999999988 4677777766 88898
Q ss_pred eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCc
Q 038090 85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCN 163 (186)
Q Consensus 85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~ 163 (186)
+++|.+ ..+|+ ++-...|..++.+.|.+. ..|..++++.+|+.+.+..|.+. .+|+++..++ |..||+++|+
T Consensus 150 ~sNNkl----~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk 222 (722)
T KOG0532|consen 150 VSNNKL----TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK 222 (722)
T ss_pred EecCcc----ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence 999853 45566 788888999999999987 78888999999999999999999 8888888555 9999999999
Q ss_pred ccccCChhHHH-hCCCCCCCCCCC
Q 038090 164 ILGKIPTSLLI-RLPPSVALSSTP 186 (186)
Q Consensus 164 ~~~~~p~~~~~-~l~~~~~l~~~~ 186 (186)
++ .+|..|.+ +..+.+.|..||
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCC
Confidence 99 99999974 334566777776
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=2.7e-11 Score=100.62 Aligned_cols=93 Identities=37% Similarity=0.593 Sum_probs=86.5
Q ss_pred CCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEe
Q 038090 80 LIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFD 158 (186)
Q Consensus 80 L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~ 158 (186)
++.|++++| .+.+.+|. ++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|+.++.+++|++|+
T Consensus 420 v~~L~L~~n---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQ---GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCC---CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 678899999 56778888 99999999999999999989999999999999999999999999999999999999999
Q ss_pred ccCCcccccCChhHHHh
Q 038090 159 ISSCNILGKIPTSLLIR 175 (186)
Q Consensus 159 l~~n~~~~~~p~~~~~~ 175 (186)
+++|.++|.+|..+...
T Consensus 497 Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 497 LNGNSLSGRVPAALGGR 513 (623)
T ss_pred CcCCcccccCChHHhhc
Confidence 99999999999998754
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=1.5e-12 Score=108.25 Aligned_cols=128 Identities=26% Similarity=0.233 Sum_probs=90.2
Q ss_pred hcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCC
Q 038090 24 ALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQK 102 (186)
Q Consensus 24 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~ 102 (186)
+..|++|.+.+|. + +....+-+.++.+|+.|++++|.+...+...+.++..|++|++++|.++ .+|. +..
T Consensus 358 ~~~Lq~LylanN~--L---td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~----~Lp~tva~ 428 (1081)
T KOG0618|consen 358 HAALQELYLANNH--L---TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT----TLPDTVAN 428 (1081)
T ss_pred hHHHHHHHHhcCc--c---cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh----hhhHHHHh
Confidence 3556667777777 4 5555556777888888888888877665667788888888888888544 3445 667
Q ss_pred CCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC-CchhhhccCCCCEEeccCCc
Q 038090 103 GSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE-LPTSLGKLNSLKTFDISSCN 163 (186)
Q Consensus 103 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~l~l~~n~ 163 (186)
+..|+.|....|.+. .+| .+..++.|+.+|++.|.++-. +++ -...++|++||+++|.
T Consensus 429 ~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh-hCCCcccceeeccCCc
Confidence 777888877777776 677 677788888888888877722 222 2223778888888885
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=6.1e-11 Score=93.66 Aligned_cols=154 Identities=32% Similarity=0.409 Sum_probs=99.1
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|+++++.+... +..+..+++|+.|++++|+ ...++......+.|+.|++++|.+.. .|........|+
T Consensus 141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~------l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~ 212 (394)
T COG4886 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFND------LSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALE 212 (394)
T ss_pred hcccccccccchhhh-hhhhhccccccccccCCch------hhhhhhhhhhhhhhhheeccCCcccc-Cchhhhhhhhhh
Confidence 456666666665533 2455667777777777776 34455444456677777777776663 444444455577
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
++.+++|. . ...+. +...+++..+.+..|.+. ..+..++.+.+++.|++++|.++ .++. ++...+++.++++
T Consensus 213 ~l~~~~N~---~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 213 ELDLSNNS---I-IELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLS 285 (394)
T ss_pred hhhhcCCc---c-eecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEecc
Confidence 77777762 1 12223 556666777776676665 33666777788888888888888 6555 7788888888888
Q ss_pred CCcccccCCh
Q 038090 161 SCNILGKIPT 170 (186)
Q Consensus 161 ~n~~~~~~p~ 170 (186)
+|.++...|.
T Consensus 286 ~n~~~~~~~~ 295 (394)
T COG4886 286 GNSLSNALPL 295 (394)
T ss_pred Cccccccchh
Confidence 8888744333
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=9.6e-11 Score=81.92 Aligned_cols=127 Identities=24% Similarity=0.274 Sum_probs=49.2
Q ss_pred HcCCccceEEeccccCCCCcccccC-CCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCccc-CCCC
Q 038090 51 KKLTNLIEIYLIDVDTSSAVSPTLT-NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSL-GNLT 128 (186)
Q Consensus 51 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~ 128 (186)
.+...+++|++++|.++.. +.++ .+.+|+.|++++|.+..+. .+..++.|+.|++++|.+.. +...+ ..++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T----T----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 3445688899999987743 3454 5788999999999665432 25677889999999999874 44334 3578
Q ss_pred CCCEEEcCCCcCCCC-CchhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCCCCC
Q 038090 129 NLEDRYLSDNGFSGE-LPTSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVALSST 185 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l~~~ 185 (186)
+|++|++++|++... --..++.+++|++|++.+|+++ .-+. .+...+|++..|++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCE
Confidence 899999999988731 1244678889999999999998 4442 445578888877763
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.1e-11 Score=92.05 Aligned_cols=162 Identities=24% Similarity=0.278 Sum_probs=92.2
Q ss_pred CccceecccccccCcCh-hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc-cCCCCC
Q 038090 2 SQRKINEQDFGVETSNI-SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT-LTNLSS 79 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~ 79 (186)
+|+++.+.++.+..... .....|++++.||++.|=|.- +..+.....++++|+.|.++.|.+.....+. -..++.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~n---w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHN---WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHh---HHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46667777776654332 345678888888888886321 3445556677888888888888766322221 123455
Q ss_pred CCeEeecccccc----------------------c--cccCCCCCCCCCcccEEEccCCcCCCCCC--cccCCCCCCCEE
Q 038090 80 LIYLSISECSSQ----------------------D--LFGYLPKSQKGSLLEDLRLSFTKFLGKIP--PSLGNLTNLEDR 133 (186)
Q Consensus 80 L~~L~l~~~~l~----------------------~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 133 (186)
|+.|.++.|.+. . .....+ ....+.|+.|++++|++. .++ ...+.++.|..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 666666666444 0 000000 122345666677666655 223 344566777777
Q ss_pred EcCCCcCCC-CCchh-----hhccCCCCEEeccCCcccccCC
Q 038090 134 YLSDNGFSG-ELPTS-----LGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 134 ~L~~n~~~~-~~~~~-----~~~~~~L~~l~l~~n~~~~~~p 169 (186)
+++.+++.. ..|+. -...++|++|++..|++. +++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWR 317 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-ccc
Confidence 777776662 12221 134567777777777775 444
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=3.4e-11 Score=89.52 Aligned_cols=132 Identities=24% Similarity=0.255 Sum_probs=105.0
Q ss_pred hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCC
Q 038090 23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQK 102 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 102 (186)
.-+.|+++|+|+|. ...+-++++-++.++.|+++.|.+.. .. .+..+++|+.||+++|.+..+.+- -.+
T Consensus 282 TWq~LtelDLS~N~------I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~Gw---h~K 350 (490)
T KOG1259|consen 282 TWQELTELDLSGNL------ITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECVGW---HLK 350 (490)
T ss_pred hHhhhhhccccccc------hhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhhhh---Hhh
Confidence 34678899999998 57788888889999999999998874 34 488899999999999965544331 246
Q ss_pred CCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCC
Q 038090 103 GSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 103 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
+.+...|.++.|.+.+ -..++++.+|..||+.+|++. .+. ..+++++.|.++.+.+|++. .+|
T Consensus 351 LGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~-~~v 415 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA-GSV 415 (490)
T ss_pred hcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence 6778889999998862 345778899999999999998 442 45899999999999999997 444
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=2.3e-10 Score=90.41 Aligned_cols=153 Identities=31% Similarity=0.369 Sum_probs=113.3
Q ss_pred ccceecccccccCcChhhHHhhc-ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 3 QRKINEQDFGVETSNISRVARAL-QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
++.+++.++.++.. ++....+. +|+.|++++|. ...++..+..+++|+.|+++.|++.. .+...+..+.|+
T Consensus 118 l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~------i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~ 189 (394)
T COG4886 118 LTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNK------IESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLN 189 (394)
T ss_pred eeEEecCCcccccC-ccccccchhhcccccccccc------hhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhh
Confidence 55677777776543 44445553 88888888888 45565567788888888888888774 555555788888
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
.+++++|.+. .+|. ......|+.+.+++|.+. ..+..+.++.++..+.+.+|++. ..+..++.++++++++++
T Consensus 190 ~L~ls~N~i~----~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 190 NLDLSGNKIS----DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred heeccCCccc----cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence 8888888543 3344 334555888888888644 56667788888888888898888 556778888999999999
Q ss_pred CCcccccCCh
Q 038090 161 SCNILGKIPT 170 (186)
Q Consensus 161 ~n~~~~~~p~ 170 (186)
+|.++ .++.
T Consensus 264 ~n~i~-~i~~ 272 (394)
T COG4886 264 NNQIS-SISS 272 (394)
T ss_pred ccccc-cccc
Confidence 99998 7776
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.97 E-value=5.4e-10 Score=85.65 Aligned_cols=111 Identities=19% Similarity=0.163 Sum_probs=86.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
.||+|++++|.++.+...+|.++.++++|.|..|. + .......|.++..|++|++++|+++...|..|..+.+|.
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~--l---~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK--L---EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcch--H---HHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 58899999999998888899999999999999999 4 333445688999999999999999988888999999999
Q ss_pred eEeecccccc--------------ccccCCCCCCCCCcccEEEccCCcCC
Q 038090 82 YLSISECSSQ--------------DLFGYLPKSQKGSLLEDLRLSFTKFL 117 (186)
Q Consensus 82 ~L~l~~~~l~--------------~~~~~~~~~~~~~~L~~L~l~~~~~~ 117 (186)
++++-.|..- .-....|..+....++.+.++++.+.
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~ 399 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFG 399 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcccc
Confidence 9998776543 11112233566667777777766553
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.96 E-value=2.1e-10 Score=86.46 Aligned_cols=150 Identities=23% Similarity=0.239 Sum_probs=77.3
Q ss_pred HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc-------------cCCCCCCCeEeeccc
Q 038090 22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT-------------LTNLSSLIYLSISEC 88 (186)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~ 88 (186)
..+++|+.+|||+|.|.. .-...+-..+..+..|++|.+.+|.+....... .+.-+.|+++.+.+|
T Consensus 89 ~~~~~L~~ldLSDNA~G~-~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGP-KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeeccccccCc-cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 445677777777777311 001123334455667777777777665332222 222345677777666
Q ss_pred cccccccC-CCC-CCCCCcccEEEccCCcCCCCC----CcccCCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEe
Q 038090 89 SSQDLFGY-LPK-SQKGSLLEDLRLSFTKFLGKI----PPSLGNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFD 158 (186)
Q Consensus 89 ~l~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~ 158 (186)
++...... +.. ++.++.|+.+.+..|.+.... ...+..++.|+.||++.|-++.. +...+..+++|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 55422211 112 444555666666665554221 23445566666666666666532 223345556666666
Q ss_pred ccCCcccccCChhH
Q 038090 159 ISSCNILGKIPTSL 172 (186)
Q Consensus 159 l~~n~~~~~~p~~~ 172 (186)
+++|.+...--.++
T Consensus 248 l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 248 LGDCLLENEGAIAF 261 (382)
T ss_pred ccccccccccHHHH
Confidence 66666654433333
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.91 E-value=3.6e-10 Score=85.16 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=120.4
Q ss_pred CccceecccccccCcChhhH----HhhcccCeeeCCCCCccccccccch-h---------HHHHcCCccceEEeccccCC
Q 038090 2 SQRKINEQDFGVETSNISRV----ARALQLGVLDLSYNHFAFKLQKSGL-S---------NLAKKLTNLIEIYLIDVDTS 67 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~-~---------~~~~~l~~L~~L~l~~~~~~ 67 (186)
.|++|+|++|.+....++.+ ..+..|+.|.+.+|+ ++...+.. . .....-+.|+++...+|.+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 58899999998877766665 578999999999999 42222221 1 11122378999999999877
Q ss_pred CCc----ccccCCCCCCCeEeeccccccccccCC-CC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCC
Q 038090 68 SAV----SPTLTNLSSLIYLSISECSSQDLFGYL-PK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSD 137 (186)
Q Consensus 68 ~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~ 137 (186)
... ...|...+.|+.+.++.|.+..--... .. +..+++|+.|++.+|.++.. +...++.|+.|++++++.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 432 345677889999999999764322211 23 78899999999999988644 456677889999999999
Q ss_pred CcCCCCCchhh-----hccCCCCEEeccCCcccc
Q 038090 138 NGFSGELPTSL-----GKLNSLKTFDISSCNILG 166 (186)
Q Consensus 138 n~~~~~~~~~~-----~~~~~L~~l~l~~n~~~~ 166 (186)
|.++.....++ ...++|+++.+.+|.++.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 99986655443 356899999999999974
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.1e-09 Score=63.39 Aligned_cols=61 Identities=36% Similarity=0.474 Sum_probs=44.1
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcc
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNI 164 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~ 164 (186)
++|+.|++++|.+....+..|..+++|++|++++|.+...-+..|..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577777777777644446777788888888888888733345677888888888888764
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.8e-09 Score=62.55 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=20.4
Q ss_pred HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccc
Q 038090 49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC 88 (186)
Q Consensus 49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (186)
.|.++++|++|++++|.+....+..|.++++|+++++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444555555555555554444445555555555555554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.82 E-value=5.5e-10 Score=83.21 Aligned_cols=127 Identities=21% Similarity=0.128 Sum_probs=100.1
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.+++++|.|+.+ -+.+.-.+.++.|++|+|. + ..+- .+..+.+|+.|++++|.++. ..+.=.++.+++.
T Consensus 286 LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~--i----~~v~-nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 286 LTELDLSGNLITQI-DESVKLAPKLRRLILSQNR--I----RTVQ-NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred hhhccccccchhhh-hhhhhhccceeEEeccccc--e----eeeh-hhhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence 67899999988644 3556678999999999999 3 2332 37789999999999998774 3334456889999
Q ss_pred EeeccccccccccCCCCCCCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCC
Q 038090 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSG 142 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~ 142 (186)
|.++.|.+...++ +.++.+|..||+.+|++... --..+++++-|+++.|.+|.+.+
T Consensus 357 L~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 357 LKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999996554433 67888999999999998632 23678999999999999999983
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.75 E-value=4.8e-09 Score=77.12 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=84.9
Q ss_pred hHHhhcccCeeeCCCCCccccccccchhH----HHHcCCccceEEeccccCCCCcccccC-------------CCCCCCe
Q 038090 20 RVARALQLGVLDLSYNHFAFKLQKSGLSN----LAKKLTNLIEIYLIDVDTSSAVSPTLT-------------NLSSLIY 82 (186)
Q Consensus 20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~l~~L~~ 82 (186)
++.+|++|+.+++|+|.| ...+|+ .+..-..|.+|.+++|.+....++.++ .-+.|+.
T Consensus 87 aLlkcp~l~~v~LSDNAf-----g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~ 161 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAF-----GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEV 161 (388)
T ss_pred HHhcCCcceeeecccccc-----CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceE
Confidence 445667777777777773 223332 233446677777777766544333333 2355777
Q ss_pred EeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCC-----CcccCCCCCCCEEEcCCCcCCCCC----chhhhcc
Q 038090 83 LSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKI-----PPSLGNLTNLEDRYLSDNGFSGEL----PTSLGKL 151 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~ 151 (186)
+.+.+|++.+.+...-. +.....+..+.+..|.|.-+. -..+..+.+|+.||++.|-++... ...+..+
T Consensus 162 vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 162 VICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred EEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 77777765544332222 334445666666666664221 122345677788888877776322 2334556
Q ss_pred CCCCEEeccCCcccccCChhHHH
Q 038090 152 NSLKTFDISSCNILGKIPTSLLI 174 (186)
Q Consensus 152 ~~L~~l~l~~n~~~~~~p~~~~~ 174 (186)
+.|+.|.+..|-++.+..+++.+
T Consensus 242 ~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 242 NLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred chhhhccccchhhccccHHHHHH
Confidence 66777777777776555555544
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=6.8e-09 Score=80.56 Aligned_cols=158 Identities=19% Similarity=0.111 Sum_probs=92.4
Q ss_pred CccceecccccccCcChhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
+|+.|+++.|.+........ ..+++|+.|.++.|++. ...+--.+..+++|+.|.+.+|.....-.....-+..|
T Consensus 173 ~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls----~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L 248 (505)
T KOG3207|consen 173 SLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS----WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL 248 (505)
T ss_pred cchhcccccccccCCccccchhhhhhhheEEeccCCCC----HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH
Confidence 45555666555442211111 24556666666666632 23333344556677777776664111111223335678
Q ss_pred CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCC-CCcc-----cCCCCCCCEEEcCCCcCCCCCc--hhhhccC
Q 038090 81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK-IPPS-----LGNLTNLEDRYLSDNGFSGELP--TSLGKLN 152 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~ 152 (186)
+.|++++|.+-.+ ...+..+.++.|..|.++.+++.+. .|+. ...+++|++|++..|++. .++ ..+..++
T Consensus 249 ~~LdLs~N~li~~-~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 249 QELDLSNNNLIDF-DQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLE 326 (505)
T ss_pred hhccccCCccccc-ccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccc
Confidence 8888888854221 1223367778888888888887643 3332 235688999999999886 433 2355667
Q ss_pred CCCEEeccCCccc
Q 038090 153 SLKTFDISSCNIL 165 (186)
Q Consensus 153 ~L~~l~l~~n~~~ 165 (186)
+|+.+.+..|.+.
T Consensus 327 nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 327 NLKHLRITLNYLN 339 (505)
T ss_pred hhhhhhccccccc
Confidence 8888888888775
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.62 E-value=2.2e-09 Score=71.22 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=92.9
Q ss_pred hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CC
Q 038090 23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ 101 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~ 101 (186)
+-..+..+||+.|++.. ....+..+.+...|..+++++|.+.+.++....+++.++.+++++|.+ ..+|+ +.
T Consensus 25 dakE~h~ldLssc~lm~---i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~nei----sdvPeE~A 97 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQLMY---IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEI----SDVPEELA 97 (177)
T ss_pred HHHHhhhcccccchhhH---HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhh----hhchHHHh
Confidence 34567788899988321 222334455567777788899988865454556677888888888843 34566 77
Q ss_pred CCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090 102 KGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 170 (186)
.++.|+.|++..|.+. ..|..+..+.++..|+..+|... +++..+-.....-..++.++++.+.-+.
T Consensus 98 am~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 98 AMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred hhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 8888888888888876 66776666788888888888777 6665543333344445566666654443
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.59 E-value=3e-08 Score=83.11 Aligned_cols=151 Identities=20% Similarity=0.141 Sum_probs=103.2
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC-CcccccCCCCCCCeEeeccccccccccCCCCCCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS-AVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG 103 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 103 (186)
.+|+.||+++.... ..++....-.-+|.|+.|.+.+-.+.. .+.....++++|..||++++.+....+ ++.+
T Consensus 122 ~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G----IS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG----ISRL 194 (699)
T ss_pred HhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH----Hhcc
Confidence 67888888887621 133333333357899999988866543 233455678889999999986554422 6788
Q ss_pred CcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCC--ch----hhhccCCCCEEeccCCcccccCChhHHHhC
Q 038090 104 SLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGEL--PT----SLGKLNSLKTFDISSCNILGKIPTSLLIRL 176 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~--~~----~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l 176 (186)
++|+.|.+.+-.+.. ..-..+..+++|++||++........ .. ....+|.|+.||+|++.+...+.+.+.+.+
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 888888777665542 11234667899999999986665321 11 123578999999999999888888888888
Q ss_pred CCCCCC
Q 038090 177 PPSVAL 182 (186)
Q Consensus 177 ~~~~~l 182 (186)
|.+..+
T Consensus 275 ~~L~~i 280 (699)
T KOG3665|consen 275 PNLQQI 280 (699)
T ss_pred ccHhhh
Confidence 876554
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.49 E-value=5.7e-09 Score=69.27 Aligned_cols=124 Identities=20% Similarity=0.219 Sum_probs=89.9
Q ss_pred CccceEEeccccCCCCccc---ccCCCCCCCeEeeccccccccccCCCC-C-CCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090 54 TNLIEIYLIDVDTSSAVSP---TLTNLSSLIYLSISECSSQDLFGYLPK-S-QKGSLLEDLRLSFTKFLGKIPPSLGNLT 128 (186)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 128 (186)
..+-.+++++|++.- ++. -+.+-..|+..++++|.+ ..+|. + ...+.++.+++++|.+. .+|..+..|+
T Consensus 27 kE~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~f----k~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~ 100 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGF----KKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP 100 (177)
T ss_pred HHhhhcccccchhhH-HHHHHHHHhCCceEEEEecccchh----hhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence 456677888887653 333 344455677788999843 33444 3 44457888999999997 7888899999
Q ss_pred CCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHH-hCCCCCCCCCC
Q 038090 129 NLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLI-RLPPSVALSST 185 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~-~l~~~~~l~~~ 185 (186)
.|+.++++.|.+. ..|.-+..+.++..|+..+|.+. ++|..+.. ..+.+.++.-+
T Consensus 101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 9999999999999 66777777899999999999887 88877543 34445554433
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.6e-09 Score=76.48 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=75.8
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-ccccCCC-CCC
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTLTNL-SSL 80 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l-~~L 80 (186)
|+.|.+.+..+.+.....+++-++|+.++++.+. ++......-.+..+..|+.|+++.|...... --.+... .+|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s---G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS---GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeecccccc---ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 4445555554444444445555555555555554 1222333344455555555555555433211 1111121 245
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcC-CCCCCcccCCCCCCCEEEcCCCcCCCCCch---hhhccCCCC
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKF-LGKIPPSLGNLTNLEDRYLSDNGFSGELPT---SLGKLNSLK 155 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~ 155 (186)
+.|+++++.-.-....+.- ..+++++..||++++.. +......|.+++-|+++.++.|-.. .|. .+...++|.
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceE
Confidence 5555555421000111111 34667777777776653 2223344556677777777776443 232 246667778
Q ss_pred EEeccCC
Q 038090 156 TFDISSC 162 (186)
Q Consensus 156 ~l~l~~n 162 (186)
+|++.++
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 8776543
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.47 E-value=2.2e-07 Score=49.84 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=24.8
Q ss_pred CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35677777777777 56666777777777777777776
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.47 E-value=9e-08 Score=82.20 Aligned_cols=153 Identities=27% Similarity=0.252 Sum_probs=93.2
Q ss_pred ccceeccccc--ccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 3 QRKINEQDFG--VETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 3 L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
|+.|-++.+. +.....+.|..++.|+.||+++|. - ..++|..++.+-+||.|+++++.+. .+|..++++..|
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~--~---l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS--S---LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC--c---cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 5566666664 445545556778888888888776 3 5677777888888888888887766 577788888888
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCC--CCCCcccCCCCCCCEEEcCC--------------------
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFL--GKIPPSLGNLTNLEDRYLSD-------------------- 137 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~-------------------- 137 (186)
.+|++..+ .....++. ...+++|+.|.+...... ...-..+..+..|+.+....
T Consensus 621 ~~Lnl~~~---~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 621 IYLNLEVT---GRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred heeccccc---cccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 88887776 22333344 455777777776544311 11111222222222222211
Q ss_pred ------CcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 138 ------NGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 138 ------n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+... ..+..++.+.+|+.|.+.++.++
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 1111 23444677888888888888875
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=1.1e-08 Score=84.10 Aligned_cols=86 Identities=22% Similarity=0.216 Sum_probs=40.3
Q ss_pred ccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090 73 TLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN 152 (186)
Q Consensus 73 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 152 (186)
++.-++.++.|++++|.++.+. .+..++.|..||+++|.+. .+|..-..=..|..|.+++|-++ .+ .++.+++
T Consensus 182 SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~Lk 254 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLK 254 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhh
Confidence 3333444555555555322111 1444555555555555554 34432221123555555555555 32 2255555
Q ss_pred CCCEEeccCCccc
Q 038090 153 SLKTFDISSCNIL 165 (186)
Q Consensus 153 ~L~~l~l~~n~~~ 165 (186)
+|..||+++|-+.
T Consensus 255 sL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLS 267 (1096)
T ss_pred hhhccchhHhhhh
Confidence 5555555555554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=1.1e-06 Score=65.03 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=120.7
Q ss_pred CccceecccccccCcChhhHH----hhcccCeeeCCCCCccccccccchh-------HHHHcCCccceEEeccccCCCCc
Q 038090 2 SQRKINEQDFGVETSNISRVA----RALQLGVLDLSYNHFAFKLQKSGLS-------NLAKKLTNLIEIYLIDVDTSSAV 70 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~ 70 (186)
+++++++++|.+.+.-..+++ .-++|+..++++-. .++....++ +.+-+++.|+.++++.|.+....
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 567889999988766555554 45888888888876 333333333 34456899999999999988766
Q ss_pred ccc----cCCCCCCCeEeeccccccccccC-CC---------C-CCCCCcccEEEccCCcCCCCCCcc-----cCCCCCC
Q 038090 71 SPT----LTNLSSLIYLSISECSSQDLFGY-LP---------K-SQKGSLLEDLRLSFTKFLGKIPPS-----LGNLTNL 130 (186)
Q Consensus 71 ~~~----~~~l~~L~~L~l~~~~l~~~~~~-~~---------~-~~~~~~L~~L~l~~~~~~~~~~~~-----~~~l~~L 130 (186)
|+. +++-+.|.+|.+++|.+..+.+. +- . ...-+.|+.+..++|++. ..+.. +..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 654 55678899999999987644331 11 1 334577899999998876 44432 2333689
Q ss_pred CEEEcCCCcCCCCCc-----hhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 131 EDRYLSDNGFSGELP-----TSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 131 ~~L~L~~n~~~~~~~-----~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
+.+.+..|.+.-... ..+..+.+|++||+..|-++-.....++..++.+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W 241 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW 241 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc
Confidence 999999998874322 2346789999999999999844344445555543
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.32 E-value=1.5e-07 Score=75.00 Aligned_cols=129 Identities=27% Similarity=0.257 Sum_probs=64.6
Q ss_pred hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCC
Q 038090 23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQK 102 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 102 (186)
.+..++.+.+..|. ...+...+..+.+|..+++.+|.+.+. ...+..+++|++|++++|.++.+.+ +..
T Consensus 70 ~l~~l~~l~l~~n~------i~~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~----l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL------IAKILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG----LST 138 (414)
T ss_pred HhHhHHhhccchhh------hhhhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc----hhh
Confidence 34444445555554 222333345556666666666655532 2225556666666666664332211 344
Q ss_pred CCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchh-hhccCCCCEEeccCCccc
Q 038090 103 GSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTS-LGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 103 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~ 165 (186)
++.|+.|++.+|.+.. + ..+..++.|+.++++.|.+. .+... ...+.+++.+.+.+|.+.
T Consensus 139 l~~L~~L~l~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISD-I-SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccchhhheeccCcchh-c-cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchh
Confidence 4446666666666542 1 22333556666666666655 32221 345555666666666554
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=3.9e-07 Score=78.37 Aligned_cols=148 Identities=24% Similarity=0.201 Sum_probs=101.9
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL 83 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 83 (186)
|++.+.++.+...... ..++.|+.|-+..|..-+ .....+.|..++.|+.||+++|.-.+.+|+.++.+.+|++|
T Consensus 526 rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l---~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWL---LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred eEEEEeccchhhccCC--CCCCccceEEEeecchhh---hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4455555544322111 345578888888885101 23344557889999999999887667899999999999999
Q ss_pred eeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC--CCCchhhhccCCCCEEecc
Q 038090 84 SISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS--GELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 84 ~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~~~~L~~l~l~ 160 (186)
+++++.+ ..+|. +.++..|.+|++..+.....+|.....+.+|++|.+...... ...-..+..+.+|+.+...
T Consensus 601 ~L~~t~I----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 601 DLSDTGI----SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccCCCc----cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999843 36777 889999999999887765456666667899999998876532 1222334555666666554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.26 E-value=1.6e-08 Score=83.16 Aligned_cols=130 Identities=21% Similarity=0.133 Sum_probs=95.1
Q ss_pred ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCc
Q 038090 26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSL 105 (186)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 105 (186)
+|.+.++++|. -..+-..+.-++.|+.|++++|++.+. . .+..++.|++||+++|.++.+....+. .+.
T Consensus 165 ~L~~a~fsyN~------L~~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~--gc~- 233 (1096)
T KOG1859|consen 165 KLATASFSYNR------LVLMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLRHVPQLSMV--GCK- 233 (1096)
T ss_pred hHhhhhcchhh------HHhHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhccccccchh--hhh-
Confidence 45666777777 234455677778999999999998853 3 788999999999999977654433222 333
Q ss_pred ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCC
Q 038090 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
|+.|.+.+|-+. .-..+.++++|+.||++.|-+.+.-. ..+..+.+|+.|.+.+|++. ..|
T Consensus 234 L~~L~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~-c~p 295 (1096)
T KOG1859|consen 234 LQLLNLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC-CAP 295 (1096)
T ss_pred heeeeecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc-cCH
Confidence 888889888775 23457788999999999998884211 23567788999999999985 444
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=1e-07 Score=75.93 Aligned_cols=108 Identities=25% Similarity=0.242 Sum_probs=65.9
Q ss_pred HHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCC
Q 038090 21 VARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKS 100 (186)
Q Consensus 21 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 100 (186)
+..+++++.+++.+|. ...+...+..+.+|+.|++++|.+++. ..+..++.|+.|++++|.+..+. .+
T Consensus 91 l~~~~~l~~l~l~~n~------i~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~----~~ 158 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNK------IEKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS----GL 158 (414)
T ss_pred cccccceeeeeccccc------hhhcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc----CC
Confidence 5567777777777777 234443356677777777777776643 34555566777777777544322 24
Q ss_pred CCCCcccEEEccCCcCCCCCCcc-cCCCCCCCEEEcCCCcCC
Q 038090 101 QKGSLLEDLRLSFTKFLGKIPPS-LGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~n~~~ 141 (186)
..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus 159 ~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 159 ESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 446667777777777653222 1 345566666666666554
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.8e-08 Score=74.09 Aligned_cols=171 Identities=21% Similarity=0.174 Sum_probs=99.2
Q ss_pred ccceecccccccCc-ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCC-cccccCCCCC
Q 038090 3 QRKINEQDFGVETS-NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSA-VSPTLTNLSS 79 (186)
Q Consensus 3 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~ 79 (186)
|+.+|++...++.- ....+..|++|+.|.+.++. + ...+...+.+-.+|+.++++.+. ++.. ..-.+..+..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~--L---dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~ 261 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR--L---DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR 261 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccc--c---CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence 34556665555422 23345677777777777777 4 56666667777777788877763 2211 1123566777
Q ss_pred CCeEeeccccccccccCCCC-CC-CCCcccEEEccCCcCC---CCCCcccCCCCCCCEEEcCCCcC-CCCCchhhhccCC
Q 038090 80 LIYLSISECSSQDLFGYLPK-SQ-KGSLLEDLRLSFTKFL---GKIPPSLGNLTNLEDRYLSDNGF-SGELPTSLGKLNS 153 (186)
Q Consensus 80 L~~L~l~~~~l~~~~~~~~~-~~-~~~~L~~L~l~~~~~~---~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~~~~~~~ 153 (186)
|..|++++|.+..-. +.- +. --.++..|+++++.-. ..+..-...+++|.+|||+.|.- +.....++.+++.
T Consensus 262 L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred HhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 888888887543211 111 11 1245677777765421 11222234678999999998644 3334455778899
Q ss_pred CCEEeccCCcccccCChhH--HHhCCCCCCC
Q 038090 154 LKTFDISSCNILGKIPTSL--LIRLPPSVAL 182 (186)
Q Consensus 154 L~~l~l~~n~~~~~~p~~~--~~~l~~~~~l 182 (186)
|+++.++-|.. -+|..+ .+..|.+..|
T Consensus 340 L~~lSlsRCY~--i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 340 LQHLSLSRCYD--IIPETLLELNSKPSLVYL 368 (419)
T ss_pred heeeehhhhcC--CChHHeeeeccCcceEEE
Confidence 99999887754 234433 2345555433
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.18 E-value=1.2e-06 Score=73.60 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=99.5
Q ss_pred Cccceeccccc-ccCcChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCC
Q 038090 2 SQRKINEQDFG-VETSNISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSS 79 (186)
Q Consensus 2 ~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 79 (186)
+|+.|++++.. +...++..++ .++.|+.|.+.+-.+. .+.+......+++|..||+++++++.. .+++.+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceec----chhHHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 57889998873 4456666776 6899999999998853 455777788999999999999998854 68889999
Q ss_pred CCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCC--C----cccCCCCCCCEEEcCCCcCCCC
Q 038090 80 LIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKI--P----PSLGNLTNLEDRYLSDNGFSGE 143 (186)
Q Consensus 80 L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~----~~~~~l~~L~~L~L~~n~~~~~ 143 (186)
|+.|.+.+=.+.. ...+-++-.+++|+.||+++....... . ..-..++.|+.||.++..+...
T Consensus 197 Lq~L~mrnLe~e~-~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 197 LQVLSMRNLEFES-YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHHhccCCCCCc-hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9999887764322 122223668999999999987654221 1 1223478999999998766643
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.13 E-value=3.4e-06 Score=45.19 Aligned_cols=37 Identities=46% Similarity=0.618 Sum_probs=28.5
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 141 (186)
++|+.|++++|++. .+|..++++++|++|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46788888888887 56767888888888888888887
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.3e-06 Score=64.02 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=23.3
Q ss_pred CCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccc
Q 038090 128 TNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILG 166 (186)
Q Consensus 128 ~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~ 166 (186)
+.+-.|+|+.+++. .+. +++..+++|+-+.++++++.+
T Consensus 224 p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 224 PSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred Ccchhhhhcccccc-cHHHHHHHcCCchhheeeccCCcccc
Confidence 34445666666655 332 345667777778888777764
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=5e-05 Score=59.93 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=27.9
Q ss_pred hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccc
Q 038090 23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC 88 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (186)
.|.+++.|++++|. ...+|. --.+|++|.+++|.-....|+.+. .+|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~------L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCD------IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCC------CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 45666666766665 233331 113466666665443333443331 35666666655
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.87 E-value=1.7e-05 Score=56.22 Aligned_cols=109 Identities=23% Similarity=0.116 Sum_probs=75.9
Q ss_pred hcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCC
Q 038090 24 ALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKG 103 (186)
Q Consensus 24 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 103 (186)
......+||++|+ + ... ..|..++.|.+|.+.+|.+....|..-.-+++|+.|.+.+|.+..+ +.+..+..+
T Consensus 41 ~d~~d~iDLtdNd--l----~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDND--L----RKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASC 112 (233)
T ss_pred ccccceecccccc--h----hhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccC
Confidence 4566778999998 3 222 2356778899999999998865454334466799999999876544 333336788
Q ss_pred CcccEEEccCCcCCCCCC---cccCCCCCCCEEEcCCCcC
Q 038090 104 SLLEDLRLSFTKFLGKIP---PSLGNLTNLEDRYLSDNGF 140 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~ 140 (186)
+.|+.|.+-+|.+...-- ..+..+++|+.||+.+-..
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 889999988888764322 3456778999998776433
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.79 E-value=3e-05 Score=56.84 Aligned_cols=110 Identities=25% Similarity=0.219 Sum_probs=59.8
Q ss_pred hhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCC-CCccc
Q 038090 46 LSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGK-IPPSL 124 (186)
Q Consensus 46 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~ 124 (186)
+......+..|+.+.+.++.+++ -..+..+++|++|.++.|..+-..+..+....+++|+.+++++|.+... .-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 44444455667777777766653 2355567777777777773322222211134447777777777776521 11223
Q ss_pred CCCCCCCEEEcCCCcCCCCCc----hhhhccCCCCEEe
Q 038090 125 GNLTNLEDRYLSDNGFSGELP----TSLGKLNSLKTFD 158 (186)
Q Consensus 125 ~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~l~ 158 (186)
..+.+|..|++.+|.... +- ..|.-+++|++++
T Consensus 113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 455666777777776653 21 1234455666555
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.77 E-value=3.7e-05 Score=54.56 Aligned_cols=102 Identities=24% Similarity=0.153 Sum_probs=55.1
Q ss_pred CccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCC--cccCCCCCCC
Q 038090 54 TNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIP--PSLGNLTNLE 131 (186)
Q Consensus 54 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~ 131 (186)
.+...+++++|.+.. -..|..++.|.+|.+++|++..+...+ -...+++..|.+.+|.+. .+. ..+..|+.|+
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccch--hhhccccceEEecCcchh-hhhhcchhccCCccc
Confidence 355566666665542 235566666777777777554333322 234455666666666654 221 2344566677
Q ss_pred EEEcCCCcCCCC---CchhhhccCCCCEEecc
Q 038090 132 DRYLSDNGFSGE---LPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 132 ~L~L~~n~~~~~---~~~~~~~~~~L~~l~l~ 160 (186)
+|.+-+|.++.. --.-+-.+++|++||++
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 777666666521 01113456667777765
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00014 Score=57.50 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=43.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
.++.|++++|.+... | . -..+|+.|.+++|. - ...+|..+ ..+|+.|.+++|.....+|. +|+
T Consensus 53 ~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~--n---LtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 53 ASGRLYIKDCDIESL-P-V--LPNELTEITIENCN--N---LTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred CCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCC--C---cccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 467899999976643 2 1 23469999999876 2 23344433 25788999998832223443 355
Q ss_pred eEeeccc
Q 038090 82 YLSISEC 88 (186)
Q Consensus 82 ~L~l~~~ 88 (186)
.|++..+
T Consensus 116 ~L~L~~n 122 (426)
T PRK15386 116 SLEIKGS 122 (426)
T ss_pred eEEeCCC
Confidence 5555544
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=3.9e-05 Score=57.63 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=91.1
Q ss_pred eecccccccCc-ChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090 6 INEQDFGVETS-NISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL 83 (186)
Q Consensus 6 L~l~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 83 (186)
+.+.++.+... ....|+ .+++++++|+.+|.++- +..+...+.+++.|++|+++.|.+...+...-....+|+.+
T Consensus 50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd---WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD---WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred heecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc---HHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 34444544322 233443 67888888888888433 45566677788888888888888775433222456678888
Q ss_pred eeccccccccccCCCC-CCCCCcccEEEccCCcCCCC--CCccc---------------------------CCCCCCCEE
Q 038090 84 SISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK--IPPSL---------------------------GNLTNLEDR 133 (186)
Q Consensus 84 ~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~---------------------------~~l~~L~~L 133 (186)
-+.+..+. ..++.. +..++.++.+-++.|.+.+. ..... ..++++..+
T Consensus 127 VLNgT~L~--w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 127 VLNGTGLS--WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEcCCCCC--hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 77776432 111222 44455555555555532110 00000 112445555
Q ss_pred EcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCCh-hHHHhCCCCCC
Q 038090 134 YLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPT-SLLIRLPPSVA 181 (186)
Q Consensus 134 ~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~-~~~~~l~~~~~ 181 (186)
-+..|.+.+.-. +++...+++.-|+++.|++- ++-. .-.+++|++.+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVD 253 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhhe
Confidence 555555543222 23455667777777777773 4332 12335565543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=4.9e-05 Score=55.77 Aligned_cols=110 Identities=22% Similarity=0.266 Sum_probs=72.8
Q ss_pred cccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCC--cCCCCCCcccCCCCCCCEEEcCCCcCCC-CCch
Q 038090 70 VSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFT--KFLGKIPPSLGNLTNLEDRYLSDNGFSG-ELPT 146 (186)
Q Consensus 70 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~ 146 (186)
+....-.+..|+.+.+.+..++.+.. +-.+++|+.|.++.| .+.+.++....++++|+++++++|+++. .-..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~----~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTN----FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeeccc----CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 44455566778888877775544322 446678888889888 5555555555567899999999998883 1112
Q ss_pred hhhccCCCCEEeccCCcccccCC---hhHHHhCCCCCCCCC
Q 038090 147 SLGKLNSLKTFDISSCNILGKIP---TSLLIRLPPSVALSS 184 (186)
Q Consensus 147 ~~~~~~~L~~l~l~~n~~~~~~p---~~~~~~l~~~~~l~~ 184 (186)
.+..+.+|..|++.+|..+ .+- ..++..+|++..+++
T Consensus 111 pl~~l~nL~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcchhhhhcccCCcc-ccccHHHHHHHHhhhhccccc
Confidence 3567788889999888776 332 244556677666553
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00042 Score=45.81 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=40.3
Q ss_pred hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC
Q 038090 20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK 99 (186)
Q Consensus 20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 99 (186)
+|..+.+|+.+.+...- ..--...|.++.+++.+.+..+ +.......|..+.+++.+.+..+ +..+... .
T Consensus 7 ~F~~~~~l~~i~~~~~~------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~--~ 76 (129)
T PF13306_consen 7 AFYNCSNLESITFPNTI------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDN--A 76 (129)
T ss_dssp TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TT--T
T ss_pred HHhCCCCCCEEEECCCe------eEeChhhccccccccccccccc-ccccceeeeeccccccccccccc-ccccccc--c
Confidence 45566666666665432 1112223555556666666553 33333345556656666666432 1111110 1
Q ss_pred CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCC
Q 038090 100 SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSD 137 (186)
Q Consensus 100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 137 (186)
+..+++++.+++..+ +.......+..+ +++.+.+..
T Consensus 77 F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 77 FSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 444555555555432 221222334443 555555443
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.29 E-value=0.00021 Score=55.89 Aligned_cols=175 Identities=21% Similarity=0.195 Sum_probs=110.4
Q ss_pred ccceeccccc-ccCcChhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-cccc-CCCC
Q 038090 3 QRKINEQDFG-VETSNISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTL-TNLS 78 (186)
Q Consensus 3 L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~-~~l~ 78 (186)
+.++++++|. ++....-.+ ..+.+|+.++.+.+.. ++...+...-.+..+|+.+.+..|+.-+.. ...+ .+++
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~---~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD---ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC---CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 3467777874 333332233 3789999999999882 212333333346799999999988632211 1222 3567
Q ss_pred CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcC-CCC----CCcccCCCCCCCEEEcCCCcCCCC-Cchhhhcc
Q 038090 79 SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKF-LGK----IPPSLGNLTNLEDRYLSDNGFSGE-LPTSLGKL 151 (186)
Q Consensus 79 ~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~----~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~ 151 (186)
.|+.+++.++.... ...+-. -.+++.|+.+.++.+.. ++. +...-..+..+..+.|+++..... .-+.+..+
T Consensus 347 ~Le~l~~e~~~~~~-d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 347 HLERLDLEECGLIT-DGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhcccccceeh-hhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 89999998885421 222333 46788899999887753 332 112223457788999999877632 23456788
Q ss_pred CCCCEEeccCC-cccccCChhHHHhCCCCCC
Q 038090 152 NSLKTFDISSC-NILGKIPTSLLIRLPPSVA 181 (186)
Q Consensus 152 ~~L~~l~l~~n-~~~~~~p~~~~~~l~~~~~ 181 (186)
++|+.+++-.+ .++.+--+.+..++|+...
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred cccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 99999999888 4554544566667787544
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.09 E-value=0.0018 Score=42.73 Aligned_cols=120 Identities=19% Similarity=0.191 Sum_probs=62.7
Q ss_pred HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090 49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLT 128 (186)
Q Consensus 49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 128 (186)
.|.++.+|+.+.+.. .+.......|..+.+|+.+.+..+ +..+... .+..+..++.+.+.. .+.......|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccccee--eeecccccccccccc-cccccccccccccc
Confidence 356778899999875 445445567889989999998775 3222211 167777899999965 33323345677789
Q ss_pred CCCEEEcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCChhHHHhCCC
Q 038090 129 NLEDRYLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP 178 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~ 178 (186)
+++.+.+..+ +. .++ ..+..+ +++.+.+.. .+. .++...+.+.+.
T Consensus 82 ~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~ 127 (129)
T PF13306_consen 82 NLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTK 127 (129)
T ss_dssp TECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-S-S----GGG----
T ss_pred cccccccCcc-cc-EEchhhhcCC-CceEEEECC-Ccc-EECCcccccccc
Confidence 9999999775 44 333 346666 899998875 555 666666555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=3.3e-05 Score=57.49 Aligned_cols=100 Identities=24% Similarity=0.220 Sum_probs=57.3
Q ss_pred CCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCC-CcccCCCCCCC
Q 038090 53 LTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKI-PPSLGNLTNLE 131 (186)
Q Consensus 53 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~ 131 (186)
+.+.+.|+.++|.+.++ ....+|+.|++|.++-|.+... ..+..|++|++|++-.|.|.+.- -..+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45677778888876642 3455677788888877743221 11567777777777777665221 12344566666
Q ss_pred EEEcCCCcCCCCCch-----hhhccCCCCEEe
Q 038090 132 DRYLSDNGFSGELPT-----SLGKLNSLKTFD 158 (186)
Q Consensus 132 ~L~L~~n~~~~~~~~-----~~~~~~~L~~l~ 158 (186)
.|-|..|.=.+.-+. -+-.+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666544432211 133456666555
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.00042 Score=51.79 Aligned_cols=76 Identities=33% Similarity=0.342 Sum_probs=36.7
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc--cccCCCCCC
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS--PTLTNLSSL 80 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L 80 (186)
.++|++=+|++..+ ....+|+.|+.|.||-|. + ..+. .+..+..|++|+++.|.+.+ +. ..+.++++|
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNk--I----ssL~-pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsL 90 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNK--I----SSLA-PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSL 90 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccc--c----ccch-hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchh
Confidence 35666666665542 333456666666666665 2 1111 23444555555555554442 22 234445555
Q ss_pred CeEeeccc
Q 038090 81 IYLSISEC 88 (186)
Q Consensus 81 ~~L~l~~~ 88 (186)
+.|++..|
T Consensus 91 r~LWL~EN 98 (388)
T KOG2123|consen 91 RTLWLDEN 98 (388)
T ss_pred hhHhhccC
Confidence 55555444
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00049 Score=55.56 Aligned_cols=175 Identities=21% Similarity=0.189 Sum_probs=90.1
Q ss_pred Cccceeccccc-ccCcC-hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccC-CC
Q 038090 2 SQRKINEQDFG-VETSN-ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLT-NL 77 (186)
Q Consensus 2 ~L~~L~l~~~~-~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~l 77 (186)
.|+++.+..|. +.... ......+++|+.|+++++.................+++|+.++++++. ++...-..+. .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 35666777763 33222 234457888888888873100100011122344556888888888876 4433323333 26
Q ss_pred CCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCCC--CCcccCCCCCCCEEEcCCCc----CC--------
Q 038090 78 SSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLGK--IPPSLGNLTNLEDRYLSDNG----FS-------- 141 (186)
Q Consensus 78 ~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~----~~-------- 141 (186)
++|++|.+.++. .+.. .+.. ...+++|+.|+++++..... +......+++++.+.+.... ++
T Consensus 269 ~~L~~L~l~~c~--~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 269 PNLETLSLSNCS--NLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred CCcceEccCCCC--ccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 788888866663 1122 1222 45677788888887654311 11112234444443322221 11
Q ss_pred --C--CC-chhhhccCCCCEEeccCCcccccCC-hhHHHhCCCC
Q 038090 142 --G--EL-PTSLGKLNSLKTFDISSCNILGKIP-TSLLIRLPPS 179 (186)
Q Consensus 142 --~--~~-~~~~~~~~~L~~l~l~~n~~~~~~p-~~~~~~l~~~ 179 (186)
+ .. ......++.++.+.+.++... ... ..+.+.+|.+
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGIS-DLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhcc-CcchHHHhcCCccc
Confidence 0 11 122457778888888877744 333 4555556544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.33 E-value=0.0014 Score=29.36 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=14.8
Q ss_pred CCCEEeccCCcccccCChhHH
Q 038090 153 SLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 153 ~L~~l~l~~n~~~~~~p~~~~ 173 (186)
+|++|++++|+++ .+|.++.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4678888888887 7777743
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.0026 Score=51.37 Aligned_cols=112 Identities=21% Similarity=0.150 Sum_probs=53.4
Q ss_pred CCccceEEeccccCCCC--cccccCCCCCCCeEeeccc-ccccccc-CCCC-CCCCCcccEEEccCCc-CCCCCCcccC-
Q 038090 53 LTNLIEIYLIDVDTSSA--VSPTLTNLSSLIYLSISEC-SSQDLFG-YLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLG- 125 (186)
Q Consensus 53 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~l~~~~~-~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~- 125 (186)
.+.|+.+.+.++..... .......++.|+.|+++++ ....... .... ...+.+++.++++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 46666666665533322 1233445566666666552 1000000 0111 3344556666666655 4333222222
Q ss_pred CCCCCCEEEcCCCc-CCCCCc-hhhhccCCCCEEeccCCcc
Q 038090 126 NLTNLEDRYLSDNG-FSGELP-TSLGKLNSLKTFDISSCNI 164 (186)
Q Consensus 126 ~l~~L~~L~L~~n~-~~~~~~-~~~~~~~~L~~l~l~~n~~ 164 (186)
.+++|++|.+.+|. +++..- .....+++|++++++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25667777766665 343222 2234566677777776643
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.02 E-value=0.0042 Score=25.89 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=7.8
Q ss_pred CCCEEeccCCcccccCC
Q 038090 153 SLKTFDISSCNILGKIP 169 (186)
Q Consensus 153 ~L~~l~l~~n~~~~~~p 169 (186)
+|+.|++++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5667777777665 544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.83 E-value=0.0048 Score=27.55 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=9.4
Q ss_pred cceEEeccccCCCCcccccC
Q 038090 56 LIEIYLIDVDTSSAVSPTLT 75 (186)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~ 75 (186)
|+.|++++|.++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3443343
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.64 E-value=0.011 Score=27.40 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=16.4
Q ss_pred cCCCCEEeccCCcccccCChhHH
Q 038090 151 LNSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 151 ~~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
+++|++|++++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356788888888887 7777665
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.64 E-value=0.011 Score=27.40 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=16.4
Q ss_pred cCCCCEEeccCCcccccCChhHH
Q 038090 151 LNSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 151 ~~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
+++|++|++++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356788888888887 7777665
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.30 E-value=0.0088 Score=27.21 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=13.3
Q ss_pred cCCCCEEeccCCcccccCChhHH
Q 038090 151 LNSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 151 ~~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
+++|++|++++|.++++....++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35677778887777765555543
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.44 E-value=0.00038 Score=56.48 Aligned_cols=169 Identities=21% Similarity=0.121 Sum_probs=84.1
Q ss_pred ccceecccccccCcChhhH----HhhcccCeeeCCCCCccccccccchhHHHHcC-CccceEEeccccCCCCc----ccc
Q 038090 3 QRKINEQDFGVETSNISRV----ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-TNLIEIYLIDVDTSSAV----SPT 73 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~----~~~ 73 (186)
+..+++.+|.+.......+ ..+..|+.|++++|.+.. .....+.+.+... ..+++|++..|.++... .+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD-EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc-HhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 4567777777665544444 456788888888888310 0001122222222 45666777777666432 234
Q ss_pred cCCCCCCCeEeecccccccccc-CCCC-CC----CCCcccEEEccCCcCCCCC----CcccCCCCC-CCEEEcCCCcCCC
Q 038090 74 LTNLSSLIYLSISECSSQDLFG-YLPK-SQ----KGSLLEDLRLSFTKFLGKI----PPSLGNLTN-LEDRYLSDNGFSG 142 (186)
Q Consensus 74 ~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~----~~~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~L~~n~~~~ 142 (186)
+.....++.++++.|.+..... .++. +. ...+++++.+.+|.++... ...+...+. +..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 4455667777777775431100 1111 22 3556677777766654211 112222233 4445566665553
Q ss_pred CC----chhhhcc-CCCCEEeccCCcccccCChhH
Q 038090 143 EL----PTSLGKL-NSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 143 ~~----~~~~~~~-~~L~~l~l~~n~~~~~~p~~~ 172 (186)
.. .+.+..+ ..+++++++.|.+...-...+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 21 1223333 445666666666654433333
No 77
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.26 E-value=0.019 Score=45.43 Aligned_cols=155 Identities=19% Similarity=0.153 Sum_probs=97.1
Q ss_pred Cccceeccccc-ccCcChhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC--cccccCCC
Q 038090 2 SQRKINEQDFG-VETSNISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA--VSPTLTNL 77 (186)
Q Consensus 2 ~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l 77 (186)
.|+.++.++|. +......++ .++.+|+++.++.|.- .....+...=.+.+.|+.+++..+..... +...-..+
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~---fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ---FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch---hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45677778774 333333344 4789999999999982 11333333334578999999988865532 23334567
Q ss_pred CCCCeEeeccccccccccC--CCC-CCCCCcccEEEccCCcCC-CCCCcccCCCCCCCEEEcCCCcCCCC--Cchhhhcc
Q 038090 78 SSLIYLSISECSSQDLFGY--LPK-SQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGFSGE--LPTSLGKL 151 (186)
Q Consensus 78 ~~L~~L~l~~~~l~~~~~~--~~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~ 151 (186)
+.|+++.+++|.+..-.+. +.. -..+..+..+.++++... ...-..+..+++|+.+++-.++-... +...-.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 8899999998854322211 111 245567888888887743 33445567788999999888755422 22334577
Q ss_pred CCCCEEec
Q 038090 152 NSLKTFDI 159 (186)
Q Consensus 152 ~~L~~l~l 159 (186)
+++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 87776654
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=0.0093 Score=42.58 Aligned_cols=81 Identities=17% Similarity=0.051 Sum_probs=41.0
Q ss_pred ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-ccccC-CCCCCCeEeeccccccccccCCCC-CCC
Q 038090 26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-SPTLT-NLSSLIYLSISECSSQDLFGYLPK-SQK 102 (186)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~-~~~ 102 (186)
.++.+|=+++. + ...-.+.+..++.++.|.+.+|.--+.. -+.++ -.++|+.|++++|. .+++.-.. +..
T Consensus 102 ~IeaVDAsds~--I---~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~--rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSS--I---MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP--RITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCch--H---HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC--eechhHHHHHHH
Confidence 34555555555 3 3333344555666666666666433211 12222 24567777777764 33332223 556
Q ss_pred CCcccEEEccC
Q 038090 103 GSLLEDLRLSF 113 (186)
Q Consensus 103 ~~~L~~L~l~~ 113 (186)
+++|+.|.+.+
T Consensus 175 lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 LKNLRRLHLYD 185 (221)
T ss_pred hhhhHHHHhcC
Confidence 66666665543
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.93 E-value=0.00054 Score=55.58 Aligned_cols=168 Identities=20% Similarity=0.158 Sum_probs=101.6
Q ss_pred CccceecccccccCcChhhHHh-h----cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC----Cccc
Q 038090 2 SQRKINEQDFGVETSNISRVAR-A----LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS----AVSP 72 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~-l----~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~ 72 (186)
+|..|+++++++.......++. + ..++.|++..|.+.. .-...+...+.....++.++++.|.+.. ..+.
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~-~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS-EGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc-cchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 4667888888877555555542 1 445667888877321 0012244455556778888888887641 1122
Q ss_pred ccC----CCCCCCeEeeccccccccccCC-CC-CCCCCc-ccEEEccCCcCCCC----CCcccCCC-CCCCEEEcCCCcC
Q 038090 73 TLT----NLSSLIYLSISECSSQDLFGYL-PK-SQKGSL-LEDLRLSFTKFLGK----IPPSLGNL-TNLEDRYLSDNGF 140 (186)
Q Consensus 73 ~~~----~l~~L~~L~l~~~~l~~~~~~~-~~-~~~~~~-L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~L~~n~~ 140 (186)
.+. ...++++|.+++|.++...-.. .. +...++ +..++++.|.+.+. ....+..+ +.++++++..|.+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 333 4667888888888554111111 11 333444 56688888887644 22334445 6778999999988
Q ss_pred CCCC----chhhhccCCCCEEeccCCcccccCCh
Q 038090 141 SGEL----PTSLGKLNSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 141 ~~~~----~~~~~~~~~L~~l~l~~n~~~~~~p~ 170 (186)
.... ...+..++.++++.+++|.+.+..-.
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~ 308 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVE 308 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCccccHHHH
Confidence 8543 33456677899999999988754333
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.19 E-value=0.0034 Score=45.95 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=62.1
Q ss_pred ccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090 73 TLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN 152 (186)
Q Consensus 73 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 152 (186)
.+..+...+.||++.|++.+.-.. ++.++.+..++++.|.+. ..|..++....++++++.+|..+ ..|.++++.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n---~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN---FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc---hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 344556677788877754322111 556677788888877776 66777777777777888777777 7777788888
Q ss_pred CCCEEeccCCccc
Q 038090 153 SLKTFDISSCNIL 165 (186)
Q Consensus 153 ~L~~l~l~~n~~~ 165 (186)
.+++++.-.|.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888888888776
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.64 E-value=0.17 Score=23.54 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.6
Q ss_pred CCCCEEeccCCcccccCCh
Q 038090 152 NSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 152 ~~L~~l~l~~n~~~~~~p~ 170 (186)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46888899999987 7775
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.01 E-value=0.019 Score=42.17 Aligned_cols=77 Identities=13% Similarity=-0.049 Sum_probs=53.9
Q ss_pred eecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEee
Q 038090 6 INEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSI 85 (186)
Q Consensus 6 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 85 (186)
||++.+... ..-..|+.++.+..||++.|. ....|..+++.+.++.++.+.|..+ ..|.+++..+.+++++.
T Consensus 47 ld~~s~r~v-n~~~n~s~~t~~~rl~~sknq------~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 47 LDLSSNRLV-NLGKNFSILTRLVRLDLSKNQ------IKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ehhhhhHHH-hhccchHHHHHHHHHhccHhh------HhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 455554432 223445666667777777776 4667778888888888888888776 46788888888888888
Q ss_pred ccccc
Q 038090 86 SECSS 90 (186)
Q Consensus 86 ~~~~l 90 (186)
-.+.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 77743
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.38 E-value=0.27 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=11.1
Q ss_pred CCCCEEeccCCcccccCChhH
Q 038090 152 NSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 152 ~~L~~l~l~~n~~~~~~p~~~ 172 (186)
++|++|++++|.+..+--..+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred CccCEEECCCCCCCHHHHHHH
Confidence 356666666666653333333
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.78 E-value=0.072 Score=38.19 Aligned_cols=82 Identities=23% Similarity=0.166 Sum_probs=51.3
Q ss_pred ccceEEeccccCCCCcccccCCCCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCC
Q 038090 55 NLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLE 131 (186)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~ 131 (186)
.++.++-+++.+..+.-+-+..+++++.|.+.+|. .+.. .+.. -+-.++|+.|++++|. |++..-..+.++++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck--~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK--YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc--chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 46677777776665444556677777777777773 2211 1111 2344678888888765 5555556667778888
Q ss_pred EEEcCCC
Q 038090 132 DRYLSDN 138 (186)
Q Consensus 132 ~L~L~~n 138 (186)
.|++.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 7776654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.48 E-value=0.99 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=9.3
Q ss_pred CCCCEEeccCCccc
Q 038090 152 NSLKTFDISSCNIL 165 (186)
Q Consensus 152 ~~L~~l~l~~n~~~ 165 (186)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45667777777665
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.87 E-value=1.2 Score=36.90 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=47.2
Q ss_pred CcccEEEccCCcCCCC--CCcccCCCCCCCEEEcCCCcCCCCCchhhhc--cCCCCEEeccCCcccccCC------hhHH
Q 038090 104 SLLEDLRLSFTKFLGK--IPPSLGNLTNLEDRYLSDNGFSGELPTSLGK--LNSLKTFDISSCNILGKIP------TSLL 173 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--~~~L~~l~l~~n~~~~~~p------~~~~ 173 (186)
+.+..+.+++|++... +..--...++|..|+|++|...-.-..++.+ ...|++|-+.+|+++...- .++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~ 297 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR 297 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence 4566777777776532 1122235578888888888222111222332 2357888888888863221 2555
Q ss_pred HhCCCCCCCCCC
Q 038090 174 IRLPPSVALSST 185 (186)
Q Consensus 174 ~~l~~~~~l~~~ 185 (186)
+..|.+..|++.
T Consensus 298 ~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 298 ELFPKLLRLDGV 309 (585)
T ss_pred HhcchheeecCc
Confidence 567777777653
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.07 E-value=1.4 Score=20.13 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=7.9
Q ss_pred CCCCEEeccCC-ccc
Q 038090 152 NSLKTFDISSC-NIL 165 (186)
Q Consensus 152 ~~L~~l~l~~n-~~~ 165 (186)
++|++|++++| +++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 45666666665 344
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.18 E-value=3.4 Score=34.34 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=28.0
Q ss_pred ceecccccccCcC-hhhH-HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC
Q 038090 5 KINEQDFGVETSN-ISRV-ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS 68 (186)
Q Consensus 5 ~L~l~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 68 (186)
.++|++|.+-... ...+ ..-++|..|+|++|. .++........++ ...|++|-+.+|++-.
T Consensus 222 sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~--~~~~~~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 222 SLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH--SKISSESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred eeecccchhhchhhhhHHHHhcchhheeecccch--hhhcchhhhhhhc-CCCHHHeeecCCcccc
Confidence 4555555543221 1112 245667777777773 1111121111222 3446677777766543
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.79 E-value=51 Score=33.37 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=29.0
Q ss_pred ecccccccCcChhhHHhhcccCeeeCCCCCccc
Q 038090 7 NEQDFGVETSNISRVARALQLGVLDLSYNHFAF 39 (186)
Q Consensus 7 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 39 (186)
+|++|.+.......|..+.+|+.|+|++|++.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899998888889999999999999999644
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.37 E-value=44 Score=33.77 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=8.0
Q ss_pred CCCCCcccEEEccCCc
Q 038090 100 SQKGSLLEDLRLSFTK 115 (186)
Q Consensus 100 ~~~~~~L~~L~l~~~~ 115 (186)
+..+.+|+.|+|.+|.
T Consensus 15 F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 15 CANLCNLSEIDLSGNP 30 (2740)
T ss_pred hccCCCceEEEeeCCc
Confidence 4444555555555444
Done!