Query 038090
Match_columns 186
No_of_seqs 106 out of 1579
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 12:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 4.8E-24 1.6E-28 179.2 14.2 164 2-173 467-701 (768)
2 3rgz_A Protein brassinosteroid 99.9 5.3E-24 1.8E-28 179.0 13.7 162 2-171 491-723 (768)
3 2o6q_A Variable lymphocyte rec 99.9 2.5E-23 8.5E-28 154.9 15.3 176 2-186 38-216 (270)
4 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-24 1.5E-28 162.3 10.9 177 2-186 102-302 (313)
5 4fcg_A Uncharacterized protein 99.9 1E-23 3.5E-28 161.3 12.4 169 2-179 105-303 (328)
6 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.3E-28 160.7 12.4 120 45-169 197-317 (328)
7 1ozn_A Reticulon 4 receptor; N 99.9 3.3E-23 1.1E-27 155.2 14.3 176 3-186 58-236 (285)
8 1ogq_A PGIP-2, polygalacturona 99.9 7.8E-24 2.7E-28 160.9 10.0 168 2-179 77-270 (313)
9 3m19_A Variable lymphocyte rec 99.9 1.2E-22 4E-27 149.8 14.7 158 2-167 36-194 (251)
10 3rfs_A Internalin B, repeat mo 99.9 6E-22 2.1E-26 147.6 16.6 172 2-186 42-216 (272)
11 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-22 7.5E-27 150.8 13.7 170 2-180 33-204 (285)
12 1p9a_G Platelet glycoprotein I 99.9 7.7E-22 2.7E-26 148.4 14.7 172 2-186 32-206 (290)
13 3zyi_A Leucine-rich repeat-con 99.9 3.4E-22 1.2E-26 158.7 13.2 179 2-186 76-301 (452)
14 3zyj_A Leucine-rich repeat-con 99.9 4.8E-22 1.6E-26 157.4 13.9 85 101-186 204-290 (440)
15 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.8E-26 143.9 14.6 173 2-186 15-190 (251)
16 3rfs_A Internalin B, repeat mo 99.9 2.2E-21 7.5E-26 144.6 15.5 159 1-169 63-222 (272)
17 2z66_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 150.4 10.2 134 49-186 121-259 (306)
18 2z62_A TOLL-like receptor 4, v 99.9 3.7E-22 1.3E-26 148.8 9.2 176 2-186 29-235 (276)
19 3v47_A TOLL-like receptor 5B a 99.9 1.4E-21 4.7E-26 155.0 12.9 128 55-186 276-406 (455)
20 3t6q_A CD180 antigen; protein- 99.9 2E-21 6.7E-26 159.1 12.2 178 2-186 377-558 (606)
21 2o6q_A Variable lymphocyte rec 99.9 1.4E-20 4.6E-25 140.1 15.0 156 2-165 62-218 (270)
22 2z66_A Variable lymphocyte rec 99.9 1.4E-21 4.7E-26 147.8 9.7 171 2-179 29-225 (306)
23 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-21 4.7E-26 160.1 10.0 173 3-186 378-556 (606)
24 2id5_A Lingo-1, leucine rich r 99.9 2.8E-21 9.5E-26 154.3 10.8 169 2-179 33-202 (477)
25 2z80_A TOLL-like receptor 2, v 99.8 5.7E-21 2E-25 147.1 10.9 176 2-186 77-312 (353)
26 2z62_A TOLL-like receptor 4, v 99.8 5.5E-21 1.9E-25 142.5 10.4 138 25-171 28-167 (276)
27 2o6s_A Variable lymphocyte rec 99.8 6.8E-21 2.3E-25 136.5 10.3 134 25-166 28-162 (208)
28 2z80_A TOLL-like receptor 2, v 99.8 1.5E-21 5E-26 150.5 6.5 169 2-179 53-224 (353)
29 1xku_A Decorin; proteoglycan, 99.8 3.4E-20 1.2E-24 141.5 13.9 160 2-172 122-282 (330)
30 4eco_A Uncharacterized protein 99.8 8.6E-22 2.9E-26 162.5 5.0 120 46-169 198-347 (636)
31 2z63_A TOLL-like receptor 4, v 99.8 7.7E-21 2.6E-25 154.4 10.1 175 2-186 348-529 (570)
32 1wwl_A Monocyte differentiatio 99.8 2.8E-21 9.7E-26 146.6 6.7 163 2-172 96-272 (312)
33 3vq2_A TLR4, TOLL-like recepto 99.8 9.9E-21 3.4E-25 155.0 10.3 163 2-173 33-201 (606)
34 3v47_A TOLL-like receptor 5B a 99.8 1.8E-20 6.2E-25 148.5 11.3 137 25-169 275-412 (455)
35 1ziw_A TOLL-like receptor 3; i 99.8 1E-19 3.6E-24 150.8 15.8 163 2-172 26-191 (680)
36 1p9a_G Platelet glycoprotein I 99.8 9.7E-20 3.3E-24 136.9 14.0 164 2-180 11-175 (290)
37 2ft3_A Biglycan; proteoglycan, 99.8 4.7E-20 1.6E-24 140.9 12.4 80 3-90 80-159 (332)
38 2z81_A CD282 antigen, TOLL-lik 99.8 3.8E-21 1.3E-25 155.7 6.6 170 2-179 27-198 (549)
39 4ezg_A Putative uncharacterize 99.8 4.8E-20 1.6E-24 131.1 11.5 130 22-165 41-172 (197)
40 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-19 4.9E-24 150.0 15.6 182 2-186 406-620 (680)
41 1wwl_A Monocyte differentiatio 99.8 2.8E-21 9.6E-26 146.6 4.8 172 2-186 122-307 (312)
42 3o6n_A APL1; leucine-rich repe 99.8 5.8E-20 2E-24 143.2 12.2 37 52-88 139-175 (390)
43 3e6j_A Variable lymphocyte rec 99.8 1.3E-19 4.4E-24 131.8 13.0 153 4-168 22-175 (229)
44 3o6n_A APL1; leucine-rich repe 99.8 2.6E-19 8.8E-24 139.5 15.2 131 2-141 46-178 (390)
45 2xot_A Amphoterin-induced prot 99.8 7.1E-20 2.4E-24 141.6 11.8 170 4-186 21-200 (361)
46 2xwt_C Thyrotropin receptor; s 99.8 1.2E-20 4.1E-25 137.9 7.0 164 2-176 32-203 (239)
47 4glp_A Monocyte differentiatio 99.8 6.6E-21 2.2E-25 144.4 5.7 156 2-165 92-285 (310)
48 2z7x_B TOLL-like receptor 1, v 99.8 5.9E-20 2E-24 148.0 11.6 153 3-165 326-481 (520)
49 3t6q_A CD180 antigen; protein- 99.8 4.7E-20 1.6E-24 151.0 11.1 162 2-171 34-198 (606)
50 3oja_B Anopheles plasmodium-re 99.8 7.1E-20 2.4E-24 150.1 12.1 49 122-172 272-320 (597)
51 2id5_A Lingo-1, leucine rich r 99.8 4.6E-20 1.6E-24 147.2 10.3 128 2-137 57-185 (477)
52 3oja_B Anopheles plasmodium-re 99.8 3.1E-19 1.1E-23 146.2 15.3 131 3-141 53-184 (597)
53 2ft3_A Biglycan; proteoglycan, 99.8 8.6E-20 2.9E-24 139.4 11.0 157 3-171 125-282 (332)
54 2v9t_B SLIT homolog 2 protein 99.8 2.9E-19 1E-23 129.2 13.2 150 4-165 14-165 (220)
55 4eco_A Uncharacterized protein 99.8 1.4E-19 4.7E-24 149.4 12.6 172 2-186 403-598 (636)
56 1xku_A Decorin; proteoglycan, 99.8 1.3E-19 4.3E-24 138.4 11.5 74 104-179 192-265 (330)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 6.9E-20 2.4E-24 149.0 10.6 153 22-186 350-508 (562)
58 2v70_A SLIT-2, SLIT homolog 2 99.8 5.4E-19 1.9E-23 127.8 13.4 155 4-169 14-170 (220)
59 3o53_A Protein LRIM1, AGAP0063 99.8 4.8E-20 1.7E-24 140.1 8.3 170 2-186 35-248 (317)
60 4glp_A Monocyte differentiatio 99.8 1.9E-20 6.5E-25 141.9 5.9 153 2-166 146-308 (310)
61 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 124.3 15.1 158 2-174 29-187 (208)
62 3oja_A Leucine-rich immune mol 99.8 1.1E-19 3.6E-24 145.8 9.8 170 2-186 35-248 (487)
63 2z63_A TOLL-like receptor 4, v 99.8 2.2E-19 7.5E-24 145.8 11.8 158 2-167 29-192 (570)
64 2z81_A CD282 antigen, TOLL-lik 99.8 9.8E-19 3.3E-23 141.6 15.3 172 2-186 311-508 (549)
65 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-19 7.8E-24 147.0 11.5 132 26-165 53-186 (635)
66 1h6u_A Internalin H; cell adhe 99.8 1.4E-18 4.8E-23 131.6 14.8 148 3-165 43-208 (308)
67 3j0a_A TOLL-like receptor 5; m 99.8 1.3E-19 4.3E-24 153.8 9.8 163 2-172 25-194 (844)
68 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.2E-23 131.0 14.1 156 2-179 47-202 (291)
69 2z7x_B TOLL-like receptor 1, v 99.8 8.8E-19 3E-23 141.1 13.6 171 2-186 303-479 (520)
70 4fmz_A Internalin; leucine ric 99.8 2.4E-18 8.3E-23 131.9 15.5 164 3-186 179-344 (347)
71 4ecn_A Leucine-rich repeat pro 99.8 2.6E-20 8.8E-25 157.8 4.5 119 46-169 440-589 (876)
72 4ecn_A Leucine-rich repeat pro 99.8 7.3E-19 2.5E-23 149.0 12.9 165 2-179 492-699 (876)
73 1h6u_A Internalin H; cell adhe 99.8 3E-18 1E-22 129.8 14.7 134 19-170 35-168 (308)
74 3e6j_A Variable lymphocyte rec 99.8 2.6E-18 8.9E-23 124.9 13.4 147 26-186 20-170 (229)
75 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.7E-18 5.7E-23 140.9 12.9 158 2-169 354-514 (562)
76 3zyj_A Leucine-rich repeat-con 99.8 1.6E-18 5.6E-23 137.1 12.4 89 74-165 203-292 (440)
77 1h6t_A Internalin B; cell adhe 99.8 3.9E-18 1.3E-22 128.2 13.0 150 2-171 69-218 (291)
78 2xot_A Amphoterin-induced prot 99.8 8.5E-19 2.9E-23 135.5 9.6 155 2-165 40-202 (361)
79 3zyi_A Leucine-rich repeat-con 99.8 1.9E-18 6.5E-23 137.2 11.8 89 74-165 214-303 (452)
80 2v9t_B SLIT homolog 2 protein 99.8 2.3E-18 8E-23 124.5 11.2 133 2-142 33-166 (220)
81 2xwt_C Thyrotropin receptor; s 99.8 3.5E-19 1.2E-23 130.1 6.7 160 2-173 56-225 (239)
82 1xeu_A Internalin C; cellular 99.8 3.7E-18 1.3E-22 126.6 12.1 144 2-165 42-185 (263)
83 2ca6_A RAN GTPase-activating p 99.8 9.9E-20 3.4E-24 141.8 3.2 177 2-179 95-305 (386)
84 4ezg_A Putative uncharacterize 99.8 4.4E-18 1.5E-22 120.9 11.3 148 2-165 45-194 (197)
85 3o53_A Protein LRIM1, AGAP0063 99.8 7.7E-19 2.6E-23 133.5 7.8 158 2-173 100-259 (317)
86 4g8a_A TOLL-like receptor 4; l 99.8 4E-18 1.4E-22 139.6 12.3 164 2-174 53-222 (635)
87 2ast_B S-phase kinase-associat 99.8 4.9E-19 1.7E-23 135.1 6.3 173 2-179 119-298 (336)
88 1m9s_A Internalin B; cell inva 99.8 1.5E-17 5.1E-22 136.3 14.9 147 2-168 44-190 (605)
89 2ell_A Acidic leucine-rich nuc 99.8 3.3E-18 1.1E-22 118.5 9.3 136 24-171 23-165 (168)
90 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-18 2.4E-22 121.9 11.2 135 2-144 33-169 (220)
91 4fmz_A Internalin; leucine ric 99.8 5.3E-17 1.8E-21 124.4 16.4 164 3-186 157-322 (347)
92 3j0a_A TOLL-like receptor 5; m 99.8 3.1E-18 1.1E-22 145.3 10.3 166 2-175 49-227 (844)
93 3oja_A Leucine-rich immune mol 99.7 1.8E-18 6.2E-23 138.6 7.7 158 2-173 100-259 (487)
94 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.1E-22 123.3 12.1 155 3-180 21-175 (263)
95 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.8E-22 137.1 12.0 152 1-172 65-216 (605)
96 2ast_B S-phase kinase-associat 99.7 3.6E-19 1.2E-23 135.9 2.1 154 2-162 94-257 (336)
97 1o6v_A Internalin A; bacterial 99.7 5.7E-17 2E-21 129.1 14.6 145 3-166 223-367 (466)
98 1dce_A Protein (RAB geranylger 99.7 4.8E-18 1.6E-22 138.4 7.1 171 2-182 350-565 (567)
99 3goz_A Leucine-rich repeat-con 99.7 4.7E-18 1.6E-22 131.4 6.4 159 2-165 23-209 (362)
100 1w8a_A SLIT protein; signaling 99.7 4.2E-17 1.4E-21 115.5 10.8 128 4-143 11-141 (192)
101 1o6v_A Internalin A; bacterial 99.7 9.8E-17 3.4E-21 127.8 13.1 151 2-172 244-394 (466)
102 2ca6_A RAN GTPase-activating p 99.7 2.7E-18 9.1E-23 133.7 3.0 173 1-177 122-330 (386)
103 4ay9_X Follicle-stimulating ho 99.7 1.5E-17 5E-22 128.1 6.9 172 2-181 31-230 (350)
104 3cvr_A Invasion plasmid antige 99.7 1.8E-16 6.1E-21 129.0 13.1 41 131-172 210-250 (571)
105 4b8c_D Glucose-repressible alc 99.7 3.5E-18 1.2E-22 142.8 3.1 116 49-171 219-335 (727)
106 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.3E-21 107.9 10.3 126 53-183 16-146 (149)
107 3bz5_A Internalin-J, INLJ; leu 99.7 3.9E-16 1.3E-20 124.2 14.1 141 2-165 43-183 (457)
108 3goz_A Leucine-rich repeat-con 99.7 1.8E-17 6E-22 128.1 5.8 166 2-172 52-245 (362)
109 2je0_A Acidic leucine-rich nuc 99.7 4.7E-17 1.6E-21 110.5 7.2 129 23-161 15-149 (149)
110 3bz5_A Internalin-J, INLJ; leu 99.7 5.1E-16 1.7E-20 123.5 13.6 75 2-90 65-139 (457)
111 2ell_A Acidic leucine-rich nuc 99.7 3.2E-16 1.1E-20 108.4 10.5 124 53-182 23-152 (168)
112 4b8c_D Glucose-repressible alc 99.7 7.1E-17 2.4E-21 135.0 8.5 144 18-173 217-362 (727)
113 3cvr_A Invasion plasmid antige 99.7 3.9E-16 1.3E-20 127.0 12.2 152 2-186 81-241 (571)
114 1w8a_A SLIT protein; signaling 99.7 3.3E-16 1.1E-20 110.8 10.3 131 28-169 11-143 (192)
115 2o6r_A Variable lymphocyte rec 99.7 1E-15 3.6E-20 106.7 12.1 130 27-168 9-140 (177)
116 1ds9_A Outer arm dynein; leuci 99.7 1.7E-18 5.8E-23 123.1 -3.2 159 19-186 12-183 (198)
117 2wfh_A SLIT homolog 2 protein 99.6 1.7E-15 6E-20 107.2 11.5 125 5-141 14-139 (193)
118 3g06_A SSPH2 (leucine-rich rep 99.6 2.5E-15 8.6E-20 123.5 13.7 61 104-173 221-281 (622)
119 1a9n_A U2A', U2A'; complex (nu 99.6 2.8E-16 9.6E-21 109.6 6.5 132 20-165 14-153 (176)
120 2wfh_A SLIT homolog 2 protein 99.6 2.8E-15 9.6E-20 106.2 11.7 126 28-165 13-139 (193)
121 2o6r_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 103.5 11.7 132 3-145 9-141 (177)
122 1z7x_W Ribonuclease inhibitor; 99.6 1.6E-17 5.4E-22 131.8 -1.5 84 2-90 200-296 (461)
123 1z7x_W Ribonuclease inhibitor; 99.6 3.6E-17 1.2E-21 129.7 0.5 87 2-89 171-267 (461)
124 1jl5_A Outer protein YOPM; leu 99.6 1.7E-14 6E-19 114.6 13.4 55 105-165 216-270 (454)
125 1ds9_A Outer arm dynein; leuci 99.6 2.1E-17 7.1E-22 117.5 -3.8 150 2-165 19-185 (198)
126 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-14 4.4E-19 101.1 10.5 126 50-183 15-146 (176)
127 1jl5_A Outer protein YOPM; leu 99.6 1.8E-14 6.1E-19 114.5 12.4 120 25-165 131-250 (454)
128 3g06_A SSPH2 (leucine-rich rep 99.6 3.9E-14 1.3E-18 116.4 13.6 85 78-173 221-305 (622)
129 3un9_A NLR family member X1; l 99.6 2.1E-16 7.1E-21 122.6 -0.7 168 2-174 73-261 (372)
130 1dce_A Protein (RAB geranylger 99.6 3.7E-15 1.3E-19 121.4 6.6 123 25-159 441-567 (567)
131 3g39_A Variable lymphocyte rec 99.5 9.3E-13 3.2E-17 91.3 12.9 107 26-143 10-117 (170)
132 3ogk_B Coronatine-insensitive 99.5 6.8E-14 2.3E-18 114.1 8.2 81 3-88 140-230 (592)
133 3ogk_B Coronatine-insensitive 99.5 1.7E-14 5.8E-19 117.6 4.6 176 2-182 113-323 (592)
134 2r9u_A Variable lymphocyte rec 99.5 1.1E-12 3.7E-17 91.3 13.0 105 27-142 14-119 (174)
135 3sb4_A Hypothetical leucine ri 99.5 1.3E-13 4.4E-18 105.1 8.0 99 77-182 225-326 (329)
136 3g39_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 92.7 10.1 105 55-165 10-115 (170)
137 2r9u_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 91.6 10.5 107 56-170 14-122 (174)
138 4ay9_X Follicle-stimulating ho 99.4 4E-13 1.4E-17 103.2 7.1 162 4-179 12-204 (350)
139 2p1m_B Transport inhibitor res 99.4 1.3E-13 4.5E-18 112.4 3.1 109 2-114 106-221 (594)
140 3sb4_A Hypothetical leucine ri 99.3 1.2E-11 4.2E-16 94.1 8.4 101 53-159 225-328 (329)
141 2p1m_B Transport inhibitor res 99.2 2.1E-13 7.2E-18 111.2 -2.9 77 103-179 455-533 (594)
142 2ifg_A High affinity nerve gro 99.2 4.9E-11 1.7E-15 91.3 9.3 91 46-141 24-116 (347)
143 3un9_A NLR family member X1; l 99.2 5.3E-13 1.8E-17 103.5 -1.8 159 23-186 70-250 (372)
144 2ifg_A High affinity nerve gro 99.2 7.1E-11 2.4E-15 90.4 9.7 102 57-165 11-116 (347)
145 2ra8_A Uncharacterized protein 99.1 1.4E-11 4.6E-16 95.2 2.7 131 53-183 192-338 (362)
146 4fdw_A Leucine rich hypothetic 99.0 1.5E-09 5.1E-14 84.9 8.4 159 3-173 159-342 (401)
147 4fdw_A Leucine rich hypothetic 98.9 6.3E-09 2.2E-13 81.4 9.1 148 18-177 219-369 (401)
148 2ra8_A Uncharacterized protein 98.8 8.9E-09 3E-13 79.4 7.1 155 20-180 134-310 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 1.6E-09 5.3E-14 76.0 -0.1 65 101-165 90-164 (185)
150 3rw6_A Nuclear RNA export fact 98.7 4.6E-08 1.6E-12 72.2 6.8 84 101-186 167-260 (267)
151 1io0_A Tropomodulin; LRR prote 98.6 1.2E-08 4.1E-13 71.4 2.0 121 20-141 31-164 (185)
152 3e4g_A ATP synthase subunit S, 98.5 4.7E-08 1.6E-12 67.6 2.6 84 25-115 61-150 (176)
153 3rw6_A Nuclear RNA export fact 98.5 5.4E-08 1.9E-12 71.8 2.3 30 129-158 221-257 (267)
154 3e4g_A ATP synthase subunit S, 98.3 1.3E-07 4.5E-12 65.4 1.5 98 79-179 62-169 (176)
155 4gt6_A Cell surface protein; l 98.0 1E-05 3.5E-10 62.8 7.2 105 50-162 261-367 (394)
156 4h09_A Hypothetical leucine ri 97.9 5.6E-05 1.9E-09 58.2 8.6 139 19-172 211-351 (379)
157 4fs7_A Uncharacterized protein 97.8 9.8E-05 3.4E-09 57.3 9.0 74 101-178 294-367 (394)
158 4fs7_A Uncharacterized protein 97.8 8E-05 2.7E-09 57.8 8.0 127 20-162 248-376 (394)
159 4gt6_A Cell surface protein; l 97.6 0.00063 2.1E-08 52.7 10.2 129 18-162 258-388 (394)
160 4h09_A Hypothetical leucine ri 97.5 0.00073 2.5E-08 51.9 9.8 121 51-180 214-336 (379)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 9.5E-05 3.2E-09 51.9 1.2 112 53-164 40-169 (197)
162 3rfe_A Platelet glycoprotein I 97.1 0.0021 7.2E-08 41.9 7.1 59 81-142 11-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.001 3.4E-08 46.7 2.9 89 74-162 37-136 (197)
164 3rfe_A Platelet glycoprotein I 96.7 0.0054 1.9E-07 39.9 6.3 35 129-164 32-67 (130)
165 2lz0_A Uncharacterized protein 74.6 3.8 0.00013 24.9 3.6 47 12-64 7-53 (100)
166 2lz0_A Uncharacterized protein 73.2 7.1 0.00024 23.7 4.6 38 100-138 16-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=4.8e-24 Score=179.25 Aligned_cols=164 Identities=23% Similarity=0.330 Sum_probs=103.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+....+..+..+++|+.|++++|. + .+.+|..+..+++|+.|++++|.+.+..|..++.+++|+
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~--l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR--L---TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--C---CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc--c---CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 45566666666655555566666666666666666 3 445566666666666666666666666666666666666
Q ss_pred eEeeccccccccccCC----------------------------------------------------------------
Q 038090 82 YLSISECSSQDLFGYL---------------------------------------------------------------- 97 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~---------------------------------------------------------------- 97 (186)
+|++++|.+. +.+
T Consensus 542 ~L~Ls~N~l~---g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 542 WLDLNTNLFN---GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp EEECCSSEEE---SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred EEECCCCccC---CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 6666666332 111
Q ss_pred ------CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090 98 ------PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 98 ------~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 170 (186)
|. +..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|++|++++|+++|.+|.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 11 23345566666666666666666666667777777777777666666666666777777777777666666
Q ss_pred hHH
Q 038090 171 SLL 173 (186)
Q Consensus 171 ~~~ 173 (186)
.+.
T Consensus 699 ~l~ 701 (768)
T 3rgz_A 699 AMS 701 (768)
T ss_dssp GGG
T ss_pred HHh
Confidence 665
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=5.3e-24 Score=178.99 Aligned_cols=162 Identities=26% Similarity=0.350 Sum_probs=147.9
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc--------
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT-------- 73 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-------- 73 (186)
+|+.|++++|.+....+..+..+++|+.|++++|. + .+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l---~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--F---SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--C---EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--c---cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 68899999999988888999999999999999999 5 6788889999999999999999887655543
Q ss_pred --------------------------------------------------------------cCCCCCCCeEeecccccc
Q 038090 74 --------------------------------------------------------------LTNLSSLIYLSISECSSQ 91 (186)
Q Consensus 74 --------------------------------------------------------------~~~l~~L~~L~l~~~~l~ 91 (186)
++.+++|++|++++|
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N--- 642 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN--- 642 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS---
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC---
Confidence 334578999999999
Q ss_pred ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090 92 DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 92 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 170 (186)
.+.+.+|. ++.++.|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..++.+++|+++++++|+++|.+|.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 67788998 99999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 038090 171 S 171 (186)
Q Consensus 171 ~ 171 (186)
.
T Consensus 723 ~ 723 (768)
T 3rgz_A 723 M 723 (768)
T ss_dssp S
T ss_pred c
Confidence 4
No 3
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.5e-23 Score=154.91 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=142.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
++++|+++++.+....+..|..+++|++|++++|. + ....+..+.++++|++|++++|.+....+..|..+++|+
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--L---QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--C---SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--c---CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 57889999999887767788999999999999998 4 333334467889999999999999877677889999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 113 ~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 113 ELRLDRNQL---KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcc---CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 999999944 333344 7888999999999999986555668889999999999999985444568889999999999
Q ss_pred CCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 161 SCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 161 ~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+|.++ .+|......++.+ ..+++||
T Consensus 190 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 190 NNQLK-RVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCC-cCCHHHhccccCCCEEEecCCC
Confidence 99998 7887766566664 5667776
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=4.2e-24 Score=162.33 Aligned_cols=177 Identities=21% Similarity=0.223 Sum_probs=120.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCC-CC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLS-SL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L 80 (186)
+|++|++++|.+....+..+..+++|++|++++|. + .+.+|..+..+++|++|++++|.+++..|..+..++ +|
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~--l---~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--L---SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--E---ESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc--c---CCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 46777777777765666677777777777777777 4 445666677777777777777777666666676666 67
Q ss_pred CeEeecccccc--------------------ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc
Q 038090 81 IYLSISECSSQ--------------------DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG 139 (186)
Q Consensus 81 ~~L~l~~~~l~--------------------~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 139 (186)
++|++++|.+. .+.+..|. +..+++|+.|++++|.+.+..+. +..+++|++|++++|.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 77777766432 12223344 55666677777777766544333 6667778888888888
Q ss_pred CCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 140 FSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 140 ~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+.+.+|..+..+++|++|++++|+++|.+|.. ..++.+ ..+++||
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 77777777888888888888888888777775 344443 4555554
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1e-23 Score=161.26 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=97.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCC-----
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTN----- 76 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----- 76 (186)
.|++|++++|.+. ..+..+..+++|++|++++|. + ..+|..+..+++|++|++++|...+..|..+..
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~--l----~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP--L----RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC--C----CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc--c----ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 4566666666665 445556667777777777776 3 245555666666666666666555444443332
Q ss_pred ----CCCCCeEeecccccc--------------------ccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCC
Q 038090 77 ----LSSLIYLSISECSSQ--------------------DLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE 131 (186)
Q Consensus 77 ----l~~L~~L~l~~~~l~--------------------~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 131 (186)
+++|++|++++|.++ .+. .+|. +..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 444444444444322 111 2333 45555566666666555555566666666666
Q ss_pred EEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 132 DRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 132 ~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
+|++++|.+.+.+|..+..+++|++|++++|++.+.+|.++. .++.+
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L 303 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPAN 303 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTT
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCc
Confidence 666666666656666666666666666666666666666665 44443
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.3e-23 Score=160.74 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=103.2
Q ss_pred chhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc
Q 038090 45 GLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS 123 (186)
Q Consensus 45 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 123 (186)
.+|..+..+++|++|++++|.+.+ .|..++.+++|++|++++| ...+.+|. +..+++|+.|++++|.+.+.+|..
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n---~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC---TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTC---TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCC---cchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 456667788888888888888885 5557888899999999998 55677887 899999999999999988899999
Q ss_pred cCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCC
Q 038090 124 LGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 124 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
+..+++|++|++++|.+.+.+|..++.+++|+.+++..+.+. .+.
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~-~l~ 317 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA-QLD 317 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC-C--
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH-HHh
Confidence 999999999999999999999999999999999999877665 443
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=3.3e-23 Score=155.20 Aligned_cols=176 Identities=18% Similarity=0.136 Sum_probs=100.7
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|+++++.+....+..+..+++|+.|++++|.. + ....+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~-l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-L---RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC-c---cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 44455555544444344445555555555555530 0 1112334455555666666655555544555556666666
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
|++++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 134 L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 134 LYLQDNAL---QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp EECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCcc---cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 66666632 222223 55666667777776666643444566677777777777777755566677777788888888
Q ss_pred CcccccCChhHHHhCCCC--CCCCCCC
Q 038090 162 CNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 162 n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
|.++ .+|......++.+ ..+++||
T Consensus 211 n~l~-~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 211 NNLS-ALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCS-CCCHHHHTTCTTCCEEECCSSC
T ss_pred CcCC-cCCHHHcccCcccCEEeccCCC
Confidence 8777 5666555566654 4556654
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=7.8e-24 Score=160.88 Aligned_cols=168 Identities=17% Similarity=0.256 Sum_probs=129.9
Q ss_pred Cccceeccc-ccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 2 SQRKINEQD-FGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
+|+.|++++ +.+....+..|..+++|++|++++|. + .+.+|..+.++++|++|++++|.+.+..|..+..+++|
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l---~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN--V---SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC--C---EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe--e---CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 688999995 78887778899999999999999999 5 56788889999999999999999998889999999999
Q ss_pred CeEeeccccccccccCCCC-CCCCC-cccEEEccCCcCCC-----------------------CCCcccCCCCCCCEEEc
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGS-LLEDLRLSFTKFLG-----------------------KIPPSLGNLTNLEDRYL 135 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~-----------------------~~~~~~~~l~~L~~L~L 135 (186)
++|++++|. +.+.+|. +..++ +|+.|++++|.+.+ ..|..+..+++|++|++
T Consensus 152 ~~L~L~~N~---l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 228 (313)
T 1ogq_A 152 VGITFDGNR---ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228 (313)
T ss_dssp CEEECCSSC---CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred CeEECcCCc---ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence 999999994 4445555 66665 66666666665543 34445556666666777
Q ss_pred CCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 136 SDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 136 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
++|.+.+..+. +..+++|++|++++|.+++.+|..+. .++.+
T Consensus 229 ~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L 270 (313)
T 1ogq_A 229 AKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFL 270 (313)
T ss_dssp CSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTC
T ss_pred CCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCC
Confidence 76666643333 66677788888888888777777765 55554
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.2e-22 Score=149.77 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=128.6
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++++....+..+..+++|+.|++++|. + ....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--L---QTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--C---CccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 57888999998887777788899999999999998 4 444555678889999999999998877777888899999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++++++
T Consensus 111 ~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 111 KLYLGGNQL---KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCcC---CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 999999954 333333 6788899999999999886666678889999999999999985555568888999999999
Q ss_pred CCccccc
Q 038090 161 SCNILGK 167 (186)
Q Consensus 161 ~n~~~~~ 167 (186)
+|++...
T Consensus 188 ~N~~~c~ 194 (251)
T 3m19_A 188 GNQFDCS 194 (251)
T ss_dssp SCCBCTT
T ss_pred CCceeCC
Confidence 9988754
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6e-22 Score=147.61 Aligned_cols=172 Identities=21% Similarity=0.218 Sum_probs=115.8
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++.++.+.. .+.+..+++|+.|++++|. + . .+ +.+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~--l---~-~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNK--L---H-DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSC--C---C-CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ceeeeeeCCCCccc--ccccccCCCCcEEECCCCC--C---C-Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 46677777777654 3456777888888888887 3 2 22 2566777888888888877766666677778888
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+ .+..+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 113 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 113 ELVLVENQL---QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp EEECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcC---CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 888887743 333334 6677778888887777775555556777778888888877774444446777778888888
Q ss_pred CCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 161 SCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 161 ~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+|.++ .++......++.+ ..+++||
T Consensus 190 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 190 QNQLK-SVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCC-ccCHHHHhCCcCCCEEEccCCC
Confidence 77777 4555544455554 3444443
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=2.2e-22 Score=150.75 Aligned_cols=170 Identities=18% Similarity=0.140 Sum_probs=142.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L 80 (186)
++++|+++++.+....+..+..+++|+.|++++|. + ....+..+.++++|++|++++|. +....+..+..+++|
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L 107 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--L---ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL 107 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc--c---ceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCC
Confidence 57899999999988777789999999999999999 4 44456778899999999999997 776667889999999
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
++|++++|. +....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 108 ~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 108 HTLHLDRCG---LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CEEECTTSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCc---CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 999999994 4444455 788999999999999998666667889999999999999999444456889999999999
Q ss_pred cCCcccccCChhHHHhCCCCC
Q 038090 160 SSCNILGKIPTSLLIRLPPSV 180 (186)
Q Consensus 160 ~~n~~~~~~p~~~~~~l~~~~ 180 (186)
++|.+++..|..+. .++.+.
T Consensus 185 ~~n~l~~~~~~~~~-~l~~L~ 204 (285)
T 1ozn_A 185 HQNRVAHVHPHAFR-DLGRLM 204 (285)
T ss_dssp CSSCCCEECTTTTT-TCTTCC
T ss_pred CCCcccccCHhHcc-Cccccc
Confidence 99999855566665 566553
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=7.7e-22 Score=148.41 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=136.6
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|++++|.+....+..+..+++|+.|++++|. + ..++.. ..+++|++|++++|.+. .+|..+..+++|+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l----~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~ 103 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--L----TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT 103 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--C----CEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--c----CcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCC
Confidence 57788999988887767788899999999999998 3 223322 67889999999999887 4677888899999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEec
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDI 159 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l 159 (186)
+|++++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|. .+..+++|++|++
T Consensus 104 ~L~l~~N~l---~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 104 VLDVSFNRL---TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp EEECCSSCC---CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcC---cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEEC
Confidence 999999954 333344 788899999999999998666667788999999999999999 5554 4678999999999
Q ss_pred cCCcccccCChhHHHhC-CCCCCCCCCC
Q 038090 160 SSCNILGKIPTSLLIRL-PPSVALSSTP 186 (186)
Q Consensus 160 ~~n~~~~~~p~~~~~~l-~~~~~l~~~~ 186 (186)
++|.++ .+|..++... ...+.+++||
T Consensus 180 ~~N~l~-~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 180 QENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred CCCcCC-ccChhhcccccCCeEEeCCCC
Confidence 999998 8998887432 2345667776
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=3.4e-22 Score=158.72 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=102.9
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++.+....+..|..+++|+.|++++|. + ....+..+.++++|++|++++|.+....+..|..+++|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--I---RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCc--c---CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 45666666666665555666666666666666666 3 333334455566666666666665554444555556666
Q ss_pred eEeeccccccccc---------------------cCCCC--CCCCC----------------------cccEEEccCCcC
Q 038090 82 YLSISECSSQDLF---------------------GYLPK--SQKGS----------------------LLEDLRLSFTKF 116 (186)
Q Consensus 82 ~L~l~~~~l~~~~---------------------~~~~~--~~~~~----------------------~L~~L~l~~~~~ 116 (186)
+|++++|.+.... ..++. +..++ +|+.|++++|.+
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence 6666555443111 11111 33334 444444444544
Q ss_pred CCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 117 LGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 117 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|......++.+ ..+++||
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence 4444555666666666666666666444556667777777777777776 6666665556654 4566665
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=157.40 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=56.2
Q ss_pred CCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC-
Q 038090 101 QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS- 179 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~- 179 (186)
..+++|+.|++++|.+....|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ .+|......++.+
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLE 282 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCC
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCC
Confidence 33445555555555555444566666677777777777776545556777888888888888887 7777666566654
Q ss_pred -CCCCCCC
Q 038090 180 -VALSSTP 186 (186)
Q Consensus 180 -~~l~~~~ 186 (186)
+.+++||
T Consensus 283 ~L~L~~Np 290 (440)
T 3zyj_A 283 RIHLHHNP 290 (440)
T ss_dssp EEECCSSC
T ss_pred EEEcCCCC
Confidence 5666776
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.4e-21 Score=143.94 Aligned_cols=173 Identities=17% Similarity=0.167 Sum_probs=140.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+.+.++++++++... +..+. ++++.|++++|. + ....+..+.++++|++|++++|.+.+..+..|..+++|+
T Consensus 15 ~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 86 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTG--L---ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86 (251)
T ss_dssp GGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCeEEecCCCCcccc-CCCCC--CCCCEEEccCCC--c---CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCC
Confidence 356788888887654 33333 689999999999 4 455556788999999999999999988788899999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 87 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 87 TLGLANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp EEECTTSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcc---cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 999999954 333344 7889999999999999986666667899999999999999994444568999999999999
Q ss_pred CCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 161 SCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 161 ~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+|.++ .+|......++.+ +.+++||
T Consensus 164 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 164 TNQLQ-SVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCC-ccCHHHHhCCCCCCEEEeeCCc
Confidence 99998 7777555566664 5666665
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.2e-21 Score=144.57 Aligned_cols=159 Identities=22% Similarity=0.206 Sum_probs=135.1
Q ss_pred CCccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 1 HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 1 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
.+|+.|++++|.+.. .+.+..+++|++|++++|. + .+..+..+..+++|++|++++|.+.+..+..++.+++|
T Consensus 63 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 63 PNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQ--L---QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSC--C---CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCc--c---CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 368899999999875 3578899999999999999 4 44445557889999999999999998777789999999
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
++|++++|.+ ....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+++++
T Consensus 136 ~~L~L~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 136 TYLNLAHNQL---QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp CEEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcc---CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 9999999944 433344 788999999999999998766777889999999999999999655666889999999999
Q ss_pred cCCcccccCC
Q 038090 160 SSCNILGKIP 169 (186)
Q Consensus 160 ~~n~~~~~~p 169 (186)
++|++.+..|
T Consensus 213 ~~N~~~~~~~ 222 (272)
T 3rfs_A 213 HDNPWDCTCP 222 (272)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCccccCc
Confidence 9999876555
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=4.5e-22 Score=150.42 Aligned_cols=134 Identities=25% Similarity=0.258 Sum_probs=88.8
Q ss_pred HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCCCCCcccCC
Q 038090 49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGN 126 (186)
Q Consensus 49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~ 126 (186)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|. +.+ ..|. +..+++|+.|++++|.+.+..|..+..
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS---FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE---EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc---cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 45556666666666666665555566666777777777763 333 3455 677777888888877777556677777
Q ss_pred CCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCC-C--CCCCCCCC
Q 038090 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP-P--SVALSSTP 186 (186)
Q Consensus 127 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~-~--~~~l~~~~ 186 (186)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+| . ...+++||
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-CCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH-hhhccCCEEEccCCC
Confidence 78888888888877744444577778888888888888755555555 333 3 34556664
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=3.7e-22 Score=148.84 Aligned_cols=176 Identities=22% Similarity=0.200 Sum_probs=131.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
++++|+++++.+....+..+..+++|+.|++++|. + ....+..+.++++|++|++++|.+.+..+..|..+++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--I---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCc--C---CccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 57889999998887766688889999999999998 4 343444678889999999999988877677888899999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCCCCchhhhcc--------
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKL-------- 151 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-------- 151 (186)
+|++++|.+ ....+. +..+++|+.|++++|.+... +|..+..+++|++|++++|.+.+..+..+..+
T Consensus 104 ~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 104 KLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp EEECTTSCC---CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred EEECCCCCc---cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence 999998844 333333 77888899999998888753 57888888888888888888874333333222
Q ss_pred -------------------CCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 152 -------------------NSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 152 -------------------~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
.+|++|++++|.++ .+|..+...++.+ ..+++||
T Consensus 181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCc
Confidence 25777777777776 6777665566654 4566665
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.4e-21 Score=154.98 Aligned_cols=128 Identities=18% Similarity=0.136 Sum_probs=89.2
Q ss_pred ccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090 55 NLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133 (186)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 133 (186)
+|+.|++++|.+.+..+..++.+++|++|++++|. +.+..+. +..+++|+.|++++|.+....+..+..+++|++|
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE---INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCc---ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 45555555555555556667777888888888873 3444454 6777788888888887775566777778888888
Q ss_pred EcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
++++|.+.+..|..+..+++|++|++++|+++ .+|......++.+ ..+++||
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCC
Confidence 88888887555667777888888888888887 6776665566654 4555554
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2e-21 Score=159.14 Aligned_cols=178 Identities=20% Similarity=0.145 Sum_probs=124.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhH-HHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSN-LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
+|+.|++++|.+....+..+..+++|+.|++++|. + ....+. .+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR--L---KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC--E---ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc--C---CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 45666666666665555666677777777777776 3 233222 36677778888888877776667777788888
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
++|++++|.+.......+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++| ++++
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L 530 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL 530 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence 8888888854321112223 6777888888888888876677888888888888888888887777788888888 8888
Q ss_pred cCCcccccCChhHHHhCCC--CCCCCCCC
Q 038090 160 SSCNILGKIPTSLLIRLPP--SVALSSTP 186 (186)
Q Consensus 160 ~~n~~~~~~p~~~~~~l~~--~~~l~~~~ 186 (186)
++|.++ .++......++. ...+++||
T Consensus 531 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 531 ASNHIS-IILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CSSCCC-CCCGGGHHHHHTSSEEECTTCC
T ss_pred cCCccc-ccCHhhcccCCCCCEEeCCCCC
Confidence 888888 444443334444 46667776
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.4e-20 Score=140.10 Aligned_cols=156 Identities=20% Similarity=0.158 Sum_probs=132.8
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|+++++.+.......+..+++|++|++++|. + ....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus 62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--L---QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--C---CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--C---CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCC
Confidence 68899999999987766677899999999999999 4 333445578899999999999999987788899999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+. ...+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++++++
T Consensus 137 ~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 137 YLSLGYNELQ---SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp EEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCcCC---ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 9999999543 33334 7889999999999999986666778899999999999999994444558889999999999
Q ss_pred CCccc
Q 038090 161 SCNIL 165 (186)
Q Consensus 161 ~n~~~ 165 (186)
+|++.
T Consensus 214 ~N~~~ 218 (270)
T 2o6q_A 214 ENPWD 218 (270)
T ss_dssp SSCBC
T ss_pred CCCee
Confidence 99985
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.4e-21 Score=147.76 Aligned_cols=171 Identities=23% Similarity=0.185 Sum_probs=97.9
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCC--------------
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTS-------------- 67 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------- 67 (186)
++++|+++++.+.......+.++++|+.|++++|.+.. .+..+..+.++++|++|++++|.+.
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF---KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE---EEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc---ccCcccccccccccCEEECCCCccccChhhcCCCCCCCE
Confidence 46677777777765544556677777777777776321 1222344445555555555555444
Q ss_pred ---------CCcc-cccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEc
Q 038090 68 ---------SAVS-PTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYL 135 (186)
Q Consensus 68 ---------~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L 135 (186)
+..+ ..+..+++|++|++++| ......+. +..+++|+.|++++|.+.+ ..|..+..+++|++|++
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTS---CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCC---cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 3222 24445555555555555 22233333 5556666666666666653 35566666677777777
Q ss_pred CCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 136 SDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 136 ~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
++|.+.+..+..+..+++|++|++++|.++ .++......++.+
T Consensus 183 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 225 (306)
T 2z66_A 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSL 225 (306)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTC
T ss_pred CCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccC
Confidence 777766444556666777777777777776 4444333345543
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.4e-21 Score=160.06 Aligned_cols=173 Identities=18% Similarity=0.097 Sum_probs=121.1
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
|+.|++++|.+... +..+..+++|+.|++++|. + .+..+ ..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 378 L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 378 LRHLDLSFNGAIIM-SANFMGLEELQHLDFQHST--L---KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp CCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSE--E---ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccEeECCCCccccc-hhhccCCCCCCeeECCCCc--c---CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 44444444444332 2444555555555555555 2 22222 3556677777777777777766677777778888
Q ss_pred eEeecccccccccc-CCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 82 YLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 82 ~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
+|++++| .+.+ .+|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 452 ~L~l~~n---~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 452 TLKMAGN---SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp EEECTTC---EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred EEECCCC---cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 8888887 3444 2465 788888999999988888777788888899999999999888666788888999999999
Q ss_pred cCCcccccCChhHHHhCC-C--CCCCCCCC
Q 038090 160 SSCNILGKIPTSLLIRLP-P--SVALSSTP 186 (186)
Q Consensus 160 ~~n~~~~~~p~~~~~~l~-~--~~~l~~~~ 186 (186)
++|+++ .+|..+. .+| . ...+++||
T Consensus 529 ~~N~l~-~~p~~~~-~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 529 SFNRIE-TSKGILQ-HFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTSCCC-CEESCGG-GSCTTCCEEECCSCC
T ss_pred CCCcCc-ccCHhHh-hhcccCcEEEccCCC
Confidence 999998 8888854 554 2 35677776
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.8e-21 Score=154.25 Aligned_cols=169 Identities=21% Similarity=0.132 Sum_probs=136.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++.+....+..|..+++|++|++++|. + ....+..+.++++|++|++++|.+....+..|..+++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--V---SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCc--c---CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 57889999999988777889999999999999998 4 455577788999999999999998876667789999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|. +....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 108 ~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 108 KLDISENK---IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp EEECTTSC---CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred EEECCCCc---cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 99999994 4444455 7888999999999999887777788889999999999998884444567888888888888
Q ss_pred CCcccccCChhHHHhCCCC
Q 038090 161 SCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 161 ~n~~~~~~p~~~~~~l~~~ 179 (186)
+|.+. .++......++.+
T Consensus 185 ~n~i~-~~~~~~~~~l~~L 202 (477)
T 2id5_A 185 HLNIN-AIRDYSFKRLYRL 202 (477)
T ss_dssp SCCCC-EECTTCSCSCTTC
T ss_pred CCcCc-EeChhhcccCccc
Confidence 88887 4444333344443
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=5.7e-21 Score=147.12 Aligned_cols=176 Identities=20% Similarity=0.254 Sum_probs=106.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc-cccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 80 (186)
+|+.|++++|.+....+..|..+++|++|++++|. + ....+..+.++++|++|++++|.+....+ ..+..+++|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY--L---SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C---SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc--C---CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 45666666666665555566667777777777776 3 22223336667777777777777664333 356677777
Q ss_pred CeEeeccccccccccCC-CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc-------------------
Q 038090 81 IYLSISECSSQDLFGYL-PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG------------------- 139 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~-~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~------------------- 139 (186)
++|++++|. ....+ +. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 152 ~~L~l~~n~---~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 152 QILRVGNMD---TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp CEEEEEESS---SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEE
T ss_pred cEEECCCCc---cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEE
Confidence 777777762 11222 33 6666777777777777665556666655555555444444
Q ss_pred -----CCCC-------------------------------CchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CC
Q 038090 140 -----FSGE-------------------------------LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VA 181 (186)
Q Consensus 140 -----~~~~-------------------------------~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~ 181 (186)
+.+. +|..+..+++|++|++++|+++ .+|..+...++.+ ..
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEE
Confidence 3321 1233456677888888888887 7777765566654 45
Q ss_pred CCCCC
Q 038090 182 LSSTP 186 (186)
Q Consensus 182 l~~~~ 186 (186)
+++||
T Consensus 308 L~~N~ 312 (353)
T 2z80_A 308 LHTNP 312 (353)
T ss_dssp CCSSC
T ss_pred eeCCC
Confidence 56654
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=5.5e-21 Score=142.51 Aligned_cols=138 Identities=21% Similarity=0.178 Sum_probs=117.6
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKG 103 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~ 103 (186)
++|+.|++++|. + ....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+ ....+. +..+
T Consensus 28 ~~l~~L~ls~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNP--L---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---QSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCC--C---CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---CEECTTTTTTC
T ss_pred CCccEEECCCCc--c---cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc---CccChhhhcCC
Confidence 579999999999 4 344444788899999999999999877777899999999999999954 344445 8899
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC-CCchhhhccCCCCEEeccCCcccccCChh
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG-ELPTSLGKLNSLKTFDISSCNILGKIPTS 171 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~~p~~ 171 (186)
++|+.|++++|.+....+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.++ .++..
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~ 167 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGG
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHH
Confidence 999999999999986666679999999999999999985 36888999999999999999998 55543
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=6.8e-21 Score=136.48 Aligned_cols=134 Identities=24% Similarity=0.207 Sum_probs=63.7
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKG 103 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~ 103 (186)
++|+.|++++|. + ....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+ ....+. +..+
T Consensus 28 ~~l~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETNS--L---KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL---QSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSC--C---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTC
T ss_pred CCCcEEEcCCCc--c---CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC---CccCHhHhcCc
Confidence 345555555555 2 222222344555555555555555543334445555555555555532 211122 3455
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccc
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILG 166 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 166 (186)
++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 555555555555543333334555555555555555552222234455555555555555443
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=150.46 Aligned_cols=169 Identities=16% Similarity=0.112 Sum_probs=142.1
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|+++++++.......+.++++|+.|++++|. + .+..+..+.++++|++|++++|.+++..+..++.+++|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--I---NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--c---CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 68899999999987766789999999999999999 4 444556788999999999999999976566699999999
Q ss_pred eEeeccccccccccCCC-C-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEe
Q 038090 82 YLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFD 158 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~ 158 (186)
+|++++|.+.. ..+ . +..+++|+.|++++|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 128 ~L~L~~n~l~~---l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 128 FLNLLGNPYKT---LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp EEECTTCCCSS---SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred EEECCCCCCcc---cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeec
Confidence 99999995542 222 2 7789999999999985 5544567889999999999999999977788899999999999
Q ss_pred ccCCcccccCChhHHHhCCCC
Q 038090 159 ISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 159 l~~n~~~~~~p~~~~~~l~~~ 179 (186)
+++|.+. .+|..+...++.+
T Consensus 205 l~~n~l~-~~~~~~~~~~~~L 224 (353)
T 2z80_A 205 LHMKQHI-LLLEIFVDVTSSV 224 (353)
T ss_dssp EECSCST-THHHHHHHHTTTE
T ss_pred CCCCccc-cchhhhhhhcccc
Confidence 9999996 8888777666654
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=3.4e-20 Score=141.53 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=112.4
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+....+..+..+++|+.|++++|.+.. .+..+..+.++++|+.|++++|.+.. .|..+. ++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~ 195 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLT 195 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---GGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCS
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc---cCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCC
Confidence 46666777776666656667777888888888777321 22445566777777777777777664 343332 6777
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|. +.+..+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|.++..+++|++++++
T Consensus 196 ~L~l~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 196 ELHLDGNK---ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp EEECTTSC---CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred EEECCCCc---CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 77777773 3333344 777788888888888887666667778888888888888888 777778888888888888
Q ss_pred CCcccccCChhH
Q 038090 161 SCNILGKIPTSL 172 (186)
Q Consensus 161 ~n~~~~~~p~~~ 172 (186)
+|+++ .++...
T Consensus 272 ~N~i~-~~~~~~ 282 (330)
T 1xku_A 272 NNNIS-AIGSND 282 (330)
T ss_dssp SSCCC-CCCTTS
T ss_pred CCcCC-ccChhh
Confidence 88887 555433
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=8.6e-22 Score=162.50 Aligned_cols=120 Identities=20% Similarity=0.346 Sum_probs=84.3
Q ss_pred hhHHHHcCCccceEEeccccCCCC-----------------cccccC--CCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090 46 LSNLAKKLTNLIEIYLIDVDTSSA-----------------VSPTLT--NLSSLIYLSISECSSQDLFGYLPK-SQKGSL 105 (186)
Q Consensus 46 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~ 105 (186)
+|..+.++++|++|++++|.+++. .|+.++ .+++|++|++++| .+.+.+|. ++.+++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n---~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC---PNLTKLPTFLKALPE 274 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC---TTCSSCCTTTTTCSS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC---cCCccChHHHhcCCC
Confidence 566677777777777777777764 666776 7777777777777 55566666 777777
Q ss_pred ccEEEccCCc-CCC-CCCcccCCC------CCCCEEEcCCCcCCCCCch--hhhccCCCCEEeccCCcccccCC
Q 038090 106 LEDLRLSFTK-FLG-KIPPSLGNL------TNLEDRYLSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 106 L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
|+.|++++|. +.+ .+|..++.+ ++|++|++++|.++ .+|. .++.+++|++|++++|.++|.+|
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 7777777776 655 466655554 66777777777776 6666 66667777777777777766666
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=154.38 Aligned_cols=175 Identities=23% Similarity=0.247 Sum_probs=105.3
Q ss_pred CccceecccccccCcC--hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc-cccCCCC
Q 038090 2 SQRKINEQDFGVETSN--ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLS 78 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~ 78 (186)
+|+.|++++|.+.... +..+..+++|+.|++++|. + ..++..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~--l----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG--V----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS--E----EEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCc--c----ccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 4667777777665432 4566777777777777777 2 2233335566667777777666655443 3566666
Q ss_pred CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCC-CCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCE
Q 038090 79 SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFL-GKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKT 156 (186)
Q Consensus 79 ~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 156 (186)
+|++|++++| ......+. +..+++|+.|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 422 ~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 422 NLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCCEEECTTS---CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEeCcCC---cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 6777777666 33334444 566666666666666654 245666666666666666666666444556666666666
Q ss_pred EeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 157 FDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 157 l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
|++++|.++ .+|......++.+ ..+++||
T Consensus 499 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 499 LNMASNQLK-SVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECCSSCCS-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCC-CCCHHHhhcccCCcEEEecCCc
Confidence 666666666 4444433345543 3444443
No 32
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.8e-21 Score=146.62 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=94.0
Q ss_pred CccceecccccccCcChhhH--HhhcccCeeeCCCCCccccccccchhHHHHcC-----CccceEEeccccCCCCccccc
Q 038090 2 SQRKINEQDFGVETSNISRV--ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-----TNLIEIYLIDVDTSSAVSPTL 74 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~ 74 (186)
+|++|++++|.+....+..+ ..+++|+.|++++|. + .+. |..+..+ ++|++|++++|.+.+..+..|
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l---~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--W---ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB--C---SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC--C---cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 57778888888775555554 678888888888887 3 232 5556655 788888888888777666777
Q ss_pred CCCCCCCeEeeccccccccccCCCC-C--CCCCcccEEEccCCcCCCC--CC-cccCCCCCCCEEEcCCCcCCCCCc-hh
Q 038090 75 TNLSSLIYLSISECSSQDLFGYLPK-S--QKGSLLEDLRLSFTKFLGK--IP-PSLGNLTNLEDRYLSDNGFSGELP-TS 147 (186)
Q Consensus 75 ~~l~~L~~L~l~~~~l~~~~~~~~~-~--~~~~~L~~L~l~~~~~~~~--~~-~~~~~l~~L~~L~L~~n~~~~~~~-~~ 147 (186)
+.+++|++|++++|.+.... .++. + ..+++|+.|++++|.+... .+ ..+..+++|++|++++|.+.+..| ..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGER-GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHH-HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred ccCCCCCEEECCCCCcCcch-HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 78888888888887432110 0111 2 4555566666665555411 11 112244555555555555553332 22
Q ss_pred hhccCCCCEEeccCCcccccCChhH
Q 038090 148 LGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 148 ~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
+..+++|++|++++|.++ .+|..+
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred hhhcCCCCEEECCCCccC-hhhhhc
Confidence 333445555555555554 444433
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=9.9e-21 Score=154.99 Aligned_cols=163 Identities=21% Similarity=0.105 Sum_probs=115.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++.+....+..|.++++|+.|++++|. + ....+..|.++++|++|++++|.+.+..|..|+++++|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 107 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--I---ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--c---cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCC
Confidence 46778888887776666677788888888888887 4 444455677788888888888887776677788888888
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCC----C
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL----K 155 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L----~ 155 (186)
+|++++|.+ ....+. ++.+++|+.|++++|.+.+ .+|..++.+++|++|++++|.+.+..+..++.+++| .
T Consensus 108 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 108 NLVAVETKL---ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNL 184 (606)
T ss_dssp EEECTTSCC---CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCC
T ss_pred EEEccCCcc---ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccc
Confidence 888888743 333333 7777788888888887764 457777888888888888887775545555555444 3
Q ss_pred EEeccCCcccccCChhHH
Q 038090 156 TFDISSCNILGKIPTSLL 173 (186)
Q Consensus 156 ~l~l~~n~~~~~~p~~~~ 173 (186)
++++++|.+. .++....
T Consensus 185 ~L~l~~n~l~-~~~~~~~ 201 (606)
T 3vq2_A 185 SLDMSLNPID-FIQDQAF 201 (606)
T ss_dssp EEECTTCCCC-EECTTTT
T ss_pred eeeccCCCcc-eeCcccc
Confidence 6777777776 5555443
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=1.8e-20 Score=148.55 Aligned_cols=137 Identities=19% Similarity=0.144 Sum_probs=119.3
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKG 103 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~ 103 (186)
++|+.|++++|. + .+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+ .+..+. +..+
T Consensus 275 ~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l 346 (455)
T 3v47_A 275 SGVKTCDLSKSK--I---FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL---GSIDSRMFENL 346 (455)
T ss_dssp SCCCEEECCSSC--C---CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC---CEECGGGGTTC
T ss_pred cCceEEEecCcc--c---cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc---CCcChhHhcCc
Confidence 578888888888 4 555677788999999999999999987788999999999999999944 444455 7899
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCC
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+++++++|++++..|
T Consensus 347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999987778899999999999999999995444557899999999999999998877
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=1e-19 Score=150.81 Aligned_cols=163 Identities=22% Similarity=0.163 Sum_probs=139.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++++....+..|.++++|+.|++++|. + .+..+..+.++++|++|++++|.+....+..|+.+++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 100 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--I---SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--C---CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--c---CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCC
Confidence 57899999999988877789999999999999999 5 566677899999999999999999876666899999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhh--ccCCCCEEe
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLG--KLNSLKTFD 158 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~l~ 158 (186)
+|++++|.+ .+..+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|++|+
T Consensus 101 ~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 101 ELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp EEECCSSCC---CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred EEECCCCcc---CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence 999999944 443445 88999999999999999888888899999999999999999965555554 558999999
Q ss_pred ccCCcccccCChhH
Q 038090 159 ISSCNILGKIPTSL 172 (186)
Q Consensus 159 l~~n~~~~~~p~~~ 172 (186)
+++|.+++..|..+
T Consensus 178 L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 178 LSSNQIKEFSPGCF 191 (680)
T ss_dssp CTTCCCCCBCTTGG
T ss_pred CCCCcccccChhhh
Confidence 99999985444444
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=9.7e-20 Score=136.94 Aligned_cols=164 Identities=21% Similarity=0.190 Sum_probs=136.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.++++++++..+ +..+ .++++.|++++|. + ....+..+..+++|+.|++++|.+++..+ .+.+++|+
T Consensus 11 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 11 SHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENL--L---YTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp TCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSC--C---SEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred CccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCc--C---CccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 578899999988755 3333 2689999999999 4 45556778999999999999999886433 37899999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+. .+|. +..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 81 ~L~Ls~N~l~----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 81 TLDLSHNQLQ----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp EEECCSSCCS----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred EEECCCCcCC----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 9999999653 5566 7889999999999999996666889999999999999999994444557889999999999
Q ss_pred CCcccccCChhHHHhCCCCC
Q 038090 161 SCNILGKIPTSLLIRLPPSV 180 (186)
Q Consensus 161 ~n~~~~~~p~~~~~~l~~~~ 180 (186)
+|+++ .+|..+...++.+.
T Consensus 157 ~N~l~-~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 157 NNNLT-ELPAGLLNGLENLD 175 (290)
T ss_dssp TSCCS-CCCTTTTTTCTTCC
T ss_pred CCcCC-ccCHHHhcCcCCCC
Confidence 99998 89988877777653
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=4.7e-20 Score=140.89 Aligned_cols=80 Identities=11% Similarity=0.103 Sum_probs=35.9
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|++|++++|.+....+..+..+++|+.|++++|. + ..+|..+. ++|++|++++|.+....+..|..+++|++
T Consensus 80 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l----~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH--L----VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp CCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC--C----CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred CcEEECCCCccCccCHhHhhCcCCCCEEECCCCc--C----CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 3444444444443334444444444444444444 1 11111111 33444444444444333344666667777
Q ss_pred Eeeccccc
Q 038090 83 LSISECSS 90 (186)
Q Consensus 83 L~l~~~~l 90 (186)
|++++|.+
T Consensus 152 L~l~~n~l 159 (332)
T 2ft3_A 152 IEMGGNPL 159 (332)
T ss_dssp EECCSCCC
T ss_pred EECCCCcc
Confidence 77766654
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.8e-21 Score=155.72 Aligned_cols=170 Identities=17% Similarity=0.122 Sum_probs=127.4
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|++|++++|.+....+..|..+++|++|++++|. + ....+..+.++++|++|++++|.+.+..+..|+.+++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--I---NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--C---CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCC--c---CccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 57888899888877767778888999999999988 4 444556678888899999988888877666788888899
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
+|++++|.+... ..|. +..+++|+.|++++|...+.+| ..+..+++|++|++++|.+.+..|..++.+++|+++++
T Consensus 102 ~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 102 YLNLMGNPYQTL--GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp EEECTTCCCSSS--CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred EEECCCCccccc--chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 999888854311 3344 7788888888888887443444 56788888888888888888667777777777777777
Q ss_pred cCCcccccCChhHHHhCCCC
Q 038090 160 SSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 160 ~~n~~~~~~p~~~~~~l~~~ 179 (186)
++|.+. .+|..+...++.+
T Consensus 180 ~~n~~~-~~~~~~~~~l~~L 198 (549)
T 2z81_A 180 HLSESA-FLLEIFADILSSV 198 (549)
T ss_dssp ECSBST-THHHHHHHSTTTB
T ss_pred ccCccc-ccchhhHhhcccc
Confidence 777665 6666555445544
No 39
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=4.8e-20 Score=131.07 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=69.1
Q ss_pred HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-C
Q 038090 22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-S 100 (186)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~ 100 (186)
+.+++|+.|++++|. + ..++ .+..+++|++|++++|.+.. ++.+..+++|++|++++|. +....+. +
T Consensus 41 ~~l~~L~~L~l~~n~--i----~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~---l~~~~~~~l 108 (197)
T 4ezg_A 41 AQMNSLTYITLANIN--V----TDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKD---VTSDKIPNL 108 (197)
T ss_dssp HHHHTCCEEEEESSC--C----SCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTT---CBGGGSCCC
T ss_pred hhcCCccEEeccCCC--c----cChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCc---cCcccChhh
Confidence 455556666666655 2 2333 34555566666666554331 2345555666666666652 2222233 5
Q ss_pred CCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhccCCCCEEeccCCccc
Q 038090 101 QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
..+++|+.|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 555556666666665554445555555666666666655 33 443 3555556666666666555
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=1.4e-19 Score=149.95 Aligned_cols=182 Identities=16% Similarity=0.103 Sum_probs=125.9
Q ss_pred CccceecccccccCcC-hhhHHhhcccCeeeCCCCCcc----------------------ccccccchhHHHHcCCccce
Q 038090 2 SQRKINEQDFGVETSN-ISRVARALQLGVLDLSYNHFA----------------------FKLQKSGLSNLAKKLTNLIE 58 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~----------------------~~~~~~~~~~~~~~l~~L~~ 58 (186)
+|+.|++++|.+.... ...+..+++|++|++++|.+. + ...+..|..+..+++|+.
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC-BCTTCSSCTTTTCTTCCE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc-cccccCCcccccCCCCCE
Confidence 4566666666654322 244555666666666665521 1 001345566777888888
Q ss_pred EEeccccCCCCcccccCCCCCCCeEeeccccccccccC-----CCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCE
Q 038090 59 IYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGY-----LPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLED 132 (186)
Q Consensus 59 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 132 (186)
|++++|.+++..+..|..+++|++|++++|.++..... .+. +..+++|+.|++++|.+....+..|..+++|++
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 88888888877677788889999999998866543221 112 677888999999999988444456888999999
Q ss_pred EEcCCCcCCCCCc-hhhhccCCCCEEeccCCcccccCChhHHH-hCCC--CCCCCCCC
Q 038090 133 RYLSDNGFSGELP-TSLGKLNSLKTFDISSCNILGKIPTSLLI-RLPP--SVALSSTP 186 (186)
Q Consensus 133 L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~~p~~~~~-~l~~--~~~l~~~~ 186 (186)
|++++|.++ .+| ..+..+++|++|++++|.++ .++..... .++. ...+++||
T Consensus 565 L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 565 IDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLIT-SVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCC-BCCHHHHHHHHTTCSEEECTTCC
T ss_pred eECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCC-ccChhHhcccccccCEEEccCCC
Confidence 999999999 555 44678899999999999998 56665443 4554 35677776
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.8e-21 Score=146.63 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=131.0
Q ss_pred CccceecccccccCcChhhHHhh-----cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC--ccccc
Q 038090 2 SQRKINEQDFGVETSNISRVARA-----LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA--VSPTL 74 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~ 74 (186)
+|+.|++++|.+... +..+..+ ++|++|++++|. + ....+..+..+++|++|++++|.+.+. .+..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~--l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH--S---LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS--C---CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC--C---ccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 678899999988876 6777777 899999999998 4 455556788899999999999987653 23333
Q ss_pred --CCCCCCCeEeeccccccccccCCC-C-CCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCchhhh
Q 038090 75 --TNLSSLIYLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPTSLG 149 (186)
Q Consensus 75 --~~l~~L~~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 149 (186)
..+++|++|++++|.++... .++ . +..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPS-GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HhccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 78899999999999654221 222 2 4577889999999999886654 44556789999999999998 8887665
Q ss_pred ccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 150 KLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 150 ~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
++|++|++++|+++ .+|. + ..++.+ ..+++||
T Consensus 274 --~~L~~L~Ls~N~l~-~~p~-~-~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLD-RNPS-P-DELPQVGNLSLKGNP 307 (312)
T ss_dssp --SEEEEEECCSSCCC-SCCC-T-TTSCEEEEEECTTCT
T ss_pred --CCceEEECCCCCCC-CChh-H-hhCCCCCEEeccCCC
Confidence 78999999999998 6666 3 366654 5556664
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=5.8e-20 Score=143.22 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=14.5
Q ss_pred cCCccceEEeccccCCCCcccccCCCCCCCeEeeccc
Q 038090 52 KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISEC 88 (186)
Q Consensus 52 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 88 (186)
.+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 175 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence 3333444444444333333333333444444444443
No 43
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.3e-19 Score=131.84 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=123.2
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL 83 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 83 (186)
+.++.+++++..+ +..+ .++|+.|++++|. + .+..+..+..+++|+.|++++|.+....+..|..+++|++|
T Consensus 22 ~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 22 TTVDCRSKRHASV-PAGI--PTNAQILYLHDNQ--I---TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCSEEECCSSC--C---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEeEccCCCcCcc-CCCC--CCCCCEEEcCCCc--c---CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEE
Confidence 4567777766544 2322 3889999999999 4 45556778899999999999999987666778999999999
Q ss_pred eeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 84 SISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 84 ~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
++++|.+ ....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+++++++|
T Consensus 94 ~Ls~N~l---~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 94 DLGTNQL---TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp ECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ECCCCcC---CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 9999954 333334 678999999999999998 78888899999999999999999444456888999999999999
Q ss_pred cccccC
Q 038090 163 NILGKI 168 (186)
Q Consensus 163 ~~~~~~ 168 (186)
++....
T Consensus 170 ~~~c~c 175 (229)
T 3e6j_A 170 PWDCEC 175 (229)
T ss_dssp CBCTTB
T ss_pred CccCCc
Confidence 987443
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=2.6e-19 Score=139.54 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=70.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.++++++.+.......+..+++|+.|++++|. + ....+..+..+++|++|++++|.+.+..+..|+.+++|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--I---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCc--c---cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 34555666665554444445566666666666665 2 222233455556666666666665555455555666666
Q ss_pred eEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090 82 YLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 141 (186)
+|++++|.+. .+|. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 121 ~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 121 VLVLERNDLS----SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp EEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred EEECCCCccC----cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 6666665332 2222 345555555555555555444444555555555555555444
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=7.1e-20 Score=141.60 Aligned_cols=170 Identities=24% Similarity=0.267 Sum_probs=134.6
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHH-cCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAK-KLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
+.++++++++... +..+ ...++.|++++|. + ....+..+. .+++|+.|++++|.+....+..|..+++|++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~--l---~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNN--L---SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSC--C---CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCC--C---CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 4577777777654 3333 2468999999999 4 444444565 8899999999999999877788999999999
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhh----hccCCCCEE
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSL----GKLNSLKTF 157 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~~~L~~l 157 (186)
|++++|.+. ...+. +..+++|+.|++++|.+....+..|..+++|++|++++|.+. .+|..+ ..+++|++|
T Consensus 93 L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 93 LDLSSNHLH---TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp EECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEE
T ss_pred EECCCCcCC---cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEE
Confidence 999999543 33334 788999999999999998777888999999999999999999 566543 578999999
Q ss_pred eccCCcccccCChhHHHhCCC----CCCCCCCC
Q 038090 158 DISSCNILGKIPTSLLIRLPP----SVALSSTP 186 (186)
Q Consensus 158 ~l~~n~~~~~~p~~~~~~l~~----~~~l~~~~ 186 (186)
++++|.++ .+|......++. .+.+++||
T Consensus 169 ~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ECCCCCCC-ccCHHHhhhccHhhcceEEecCCC
Confidence 99999998 888777667774 36788887
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.2e-20 Score=137.93 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=110.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCC-ccccccccchhHHHHcCCccceEEecc-ccCCCCcccccCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNH-FAFKLQKSGLSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSS 79 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~ 79 (186)
+++.|+++++++.......|..+++|+.|++++|. + ....+..+.++++|++|++++ |.+....+..|..+++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l-----~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL-----QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC-----CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc-----ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 57888899988887766678889999999999985 2 222233567788899999988 7877666667888888
Q ss_pred CCeEeeccccccccccCCCCCCCCCccc---EEEccCC-cCCCCCCcccCCCCCCC-EEEcCCCcCCCCCchhhhccCCC
Q 038090 80 LIYLSISECSSQDLFGYLPKSQKGSLLE---DLRLSFT-KFLGKIPPSLGNLTNLE-DRYLSDNGFSGELPTSLGKLNSL 154 (186)
Q Consensus 80 L~~L~l~~~~l~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~~~~~L 154 (186)
|++|++++|.+.. +|.+..+++|+ .|++++| .+....+..+..+++|+ ++++++|.++ .+|......++|
T Consensus 107 L~~L~l~~n~l~~----lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L 181 (239)
T 2xwt_C 107 LKFLGIFNTGLKM----FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181 (239)
T ss_dssp CCEEEEEEECCCS----CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred CCEEeCCCCCCcc----ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence 8888888885432 33345555555 7777777 66544444566667777 7777777666 554433233566
Q ss_pred CEEeccCCc-ccccCChhHHHhC
Q 038090 155 KTFDISSCN-ILGKIPTSLLIRL 176 (186)
Q Consensus 155 ~~l~l~~n~-~~~~~p~~~~~~l 176 (186)
+++++++|+ ++ .+|......+
T Consensus 182 ~~L~L~~n~~l~-~i~~~~~~~l 203 (239)
T 2xwt_C 182 DAVYLNKNKYLT-VIDKDAFGGV 203 (239)
T ss_dssp EEEECTTCTTCC-EECTTTTTTC
T ss_pred CEEEcCCCCCcc-cCCHHHhhcc
Confidence 666666663 65 5555444344
No 47
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=6.6e-21 Score=144.45 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=96.8
Q ss_pred CccceecccccccCcChhhH--HhhcccCeeeCCCCCccccccccchh----HHHHcCCccceEEeccccCCCCcccccC
Q 038090 2 SQRKINEQDFGVETSNISRV--ARALQLGVLDLSYNHFAFKLQKSGLS----NLAKKLTNLIEIYLIDVDTSSAVSPTLT 75 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 75 (186)
+|++|++++|.+....+..+ ..+++|++|++++|. + .+..+ ..+..+++|++|++++|.+.+..+..++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i---~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--W---ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--C---SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--c---cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 47888888888876666666 778888888888888 3 22211 2344678888888888888777777888
Q ss_pred CCCCCCeEeeccccccccccCC-CC-CCCC---------------------------CcccEEEccCCcCCCCCCcccCC
Q 038090 76 NLSSLIYLSISECSSQDLFGYL-PK-SQKG---------------------------SLLEDLRLSFTKFLGKIPPSLGN 126 (186)
Q Consensus 76 ~l~~L~~L~l~~~~l~~~~~~~-~~-~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~ 126 (186)
.+++|++|++++|.+....+.. +. +..+ ++|+.|++++|.+.+..|..+..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 246 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR 246 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence 8888888888888542110000 01 1233 44555555555555444444444
Q ss_pred C---CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 127 L---TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 127 l---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+ ++|++|++++|.++ .+|..+. ++|++|++++|+++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 4 45555666555555 4454442 45666666666655
No 48
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=147.97 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=72.3
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccc-ccCCCCCCC
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLI 81 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~ 81 (186)
|+.|++++|.+....+..+..+++|+.|++++|.+.. ...+|..+..+++|++|++++|.+.+..|. .+..+++|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE---LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB---HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc---cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 4445555555444344444555555555555555110 113334445555555555555555442332 244455555
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchh-hhccCCCCEEec
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTS-LGKLNSLKTFDI 159 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~l~l 159 (186)
+|++++|. +.+.+|. +. ++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|+++++
T Consensus 403 ~L~Ls~N~---l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 403 SLNMSSNI---LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp EEECCSSC---CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred EEECcCCC---CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEEC
Confidence 55555552 2222222 11 34555555555554 44444445555555555555555 34433 445555555555
Q ss_pred cCCccc
Q 038090 160 SSCNIL 165 (186)
Q Consensus 160 ~~n~~~ 165 (186)
++|+++
T Consensus 476 ~~N~~~ 481 (520)
T 2z7x_B 476 HTNPWD 481 (520)
T ss_dssp CSSCBC
T ss_pred cCCCCc
Confidence 555554
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=4.7e-20 Score=151.00 Aligned_cols=162 Identities=14% Similarity=0.042 Sum_probs=134.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++.+....+..|.++++|++|++++|. + ....|..|.++++|++|++++|.+.+..|..|+.+++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--I---YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCc--c---ceeChhhccCccccCeeeCCCCcccccChhhhccccccc
Confidence 57889999999988778889999999999999998 4 555677789999999999999999887788999999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCC--EEe
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLK--TFD 158 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~--~l~ 158 (186)
+|++++|.+. ...+. +..+++|+.|++++|.+.+.....+..+++|++|++++|.+.+..+..++.+++|+ +++
T Consensus 109 ~L~L~~n~i~---~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 109 HLFFIQTGIS---SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp EEECTTSCCS---CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred EeeccccCcc---cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 9999999543 32234 78889999999999998864434445589999999999999966677788999999 899
Q ss_pred ccCCcccccCChh
Q 038090 159 ISSCNILGKIPTS 171 (186)
Q Consensus 159 l~~n~~~~~~p~~ 171 (186)
+++|.+.+..|..
T Consensus 186 l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 186 LNGNDIAGIEPGA 198 (606)
T ss_dssp CTTCCCCEECTTT
T ss_pred cCCCccCccChhH
Confidence 9999998544443
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=7.1e-20 Score=150.05 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=19.6
Q ss_pred cccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090 122 PSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 122 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred HHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCccc
Confidence 33333344444444444333 22333333444444444444443 444433
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=147.18 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=74.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|++|++++|.+....+..|.++++|+.|++++|. + ....+..+.++++|++|++++|.+.+..+..|..+++|+
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--L---KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--C---CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCc--C---CccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 56777777777776666677777777777777777 3 222223356667777777777776665566666666777
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCC
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSD 137 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 137 (186)
+|++++|.+. ...+. +..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 132 ~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 132 SLEVGDNDLV---YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp EEEECCTTCC---EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred EEECCCCccc---eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 7777666332 22233 45555555555555555432222333333333333333
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.1e-19 Score=146.24 Aligned_cols=131 Identities=12% Similarity=0.057 Sum_probs=61.4
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
++.++++++.+....+..+..+++|+.|++++|. + ....+..+..+++|+.|++++|.+.+..+..|+.+++|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--I---EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--C---CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--C---CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 3444555554444434444555555555555555 2 2222334445555555555555555444444555555555
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 141 (186)
|++++|.+. ...+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.
T Consensus 128 L~L~~n~l~---~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 128 LVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp EECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EEeeCCCCC---CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 555555221 11112 344455555555555544444444444444444444444443
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=8.6e-20 Score=139.44 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=87.7
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|++++|.+.......+..+++|+.|++++|.+.. .+..+..+..+ +|+.|++++|.+.+ .|..+. ++|++
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~ 197 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNE 197 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSC
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCE
Confidence 4444444444443333334445555555555554110 01222223333 44444444444332 222221 45666
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
|++++|. +....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus 198 L~l~~n~---i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 198 LHLDHNK---IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CBCCSSC---CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCS
T ss_pred EECCCCc---CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCC
Confidence 6666663 2333334 667777788888887777666667777788888888888777 7777777778888888888
Q ss_pred CcccccCChh
Q 038090 162 CNILGKIPTS 171 (186)
Q Consensus 162 n~~~~~~p~~ 171 (186)
|+++ .++..
T Consensus 274 N~l~-~~~~~ 282 (332)
T 2ft3_A 274 NNIT-KVGVN 282 (332)
T ss_dssp SCCC-BCCTT
T ss_pred CCCC-ccChh
Confidence 8877 55543
No 54
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.9e-19 Score=129.21 Aligned_cols=150 Identities=18% Similarity=0.127 Sum_probs=123.3
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeE
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYL 83 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 83 (186)
+.++++++++..+ +..+. ++++.|++++|. + ....+..+..+++|+.|++++|.+.+..|..|..+++|++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~--i---~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNT--I---KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSC--C---CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCc--C---CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 4567777776644 33332 689999999999 4 34344468889999999999999998778899999999999
Q ss_pred eeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 84 SISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 84 ~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
++++|.++ .+|. +..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+++++++
T Consensus 86 ~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 86 VLYGNKIT----ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp ECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ECCCCcCC----ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 99999553 3333 67899999999999999977788899999999999999999955556688899999999999
Q ss_pred Cccc
Q 038090 162 CNIL 165 (186)
Q Consensus 162 n~~~ 165 (186)
|++.
T Consensus 162 N~~~ 165 (220)
T 2v9t_B 162 NPFI 165 (220)
T ss_dssp SCEE
T ss_pred CCcC
Confidence 9885
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=1.4e-19 Score=149.40 Aligned_cols=172 Identities=16% Similarity=0.163 Sum_probs=120.0
Q ss_pred CccceecccccccCcChhhHH-------hhcccCeeeCCCCCccccccccchhH-HHHcCCccceEEeccccCCCCcccc
Q 038090 2 SQRKINEQDFGVETSNISRVA-------RALQLGVLDLSYNHFAFKLQKSGLSN-LAKKLTNLIEIYLIDVDTSSAVSPT 73 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~ 73 (186)
+|+.|++++|.+....+..+. .+.+|+.|++++|. + . .+|. .+..+++|+.|++++|.+....+..
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l---~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--I---S-KFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--C---C-SCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--c---C-cCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 356666666666555455555 56677777777777 3 3 3443 3455788888888888877433333
Q ss_pred cCCC-------CCCCeEeeccccccccccCCCC-CC--CCCcccEEEccCCcCCCCCCcccCCCCCCCEEEc------CC
Q 038090 74 LTNL-------SSLIYLSISECSSQDLFGYLPK-SQ--KGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL------SD 137 (186)
Q Consensus 74 ~~~l-------~~L~~L~l~~~~l~~~~~~~~~-~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L------~~ 137 (186)
+... ++|++|++++|.++ .+|. +. .+++|+.|++++|.+.+ +|..+..+++|++|++ ++
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT----KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC----BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred hccccccccccCCccEEECcCCcCC----ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 3322 27888888888443 4565 54 78888888888888885 7888888888888888 45
Q ss_pred CcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCCCCCC
Q 038090 138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALSSTP 186 (186)
Q Consensus 138 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l~~~~ 186 (186)
|.+.+.+|..++.+++|++|++++|.+ +.+|..+.. --....+++||
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~-~L~~L~Ls~N~ 598 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITP-NISVLDIKDNP 598 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCT-TCCEEECCSCT
T ss_pred CcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhC-cCCEEECcCCC
Confidence 666777888888888899999998888 488887662 22345666664
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.3e-19 Score=138.36 Aligned_cols=74 Identities=26% Similarity=0.230 Sum_probs=53.4
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|.++. .++.+
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L 265 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYI 265 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCc
Confidence 45666666666666555667777888888888888887555556778888888888888887 8887765 45544
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=6.9e-20 Score=149.05 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=97.4
Q ss_pred HhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC--cccccCCCCCCCeEeeccccccccccCCCC
Q 038090 22 ARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA--VSPTLTNLSSLIYLSISECSSQDLFGYLPK 99 (186)
Q Consensus 22 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 99 (186)
..+++|+.|++++|. + .+..+..+..+++|+.|++++|.+.+. .|..+..+++|++|++++|. +.+.+|.
T Consensus 350 ~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~---l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV--F---TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS---LNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSC--C---CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC---CBSCCSS
T ss_pred cCCCCceEEECCCCc--c---ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc---CCCccCh
Confidence 456677777777777 3 444555666677777777777776652 23456677777777777773 3333343
Q ss_pred --CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCC
Q 038090 100 --SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLP 177 (186)
Q Consensus 100 --~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~ 177 (186)
+..+++|+.|++++|.+.+..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|......++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 55666777777777776554444433 56777777777777 66666667777777777777776 67766434555
Q ss_pred CC--CCCCCCC
Q 038090 178 PS--VALSSTP 186 (186)
Q Consensus 178 ~~--~~l~~~~ 186 (186)
.+ ..+++||
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 54 4455655
No 58
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=5.4e-19 Score=127.79 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=127.1
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
+.++++++++..+ +..+ ...++.|++++|. + ....+ ..+..+++|+.|++++|.+++..+..|..+++|++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~--l---~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNE--F---TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSC--C---CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCc--C---CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 4678888887654 3333 3467899999999 3 33222 34788999999999999999877778999999999
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
|++++|.+ ....+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|+++++++
T Consensus 86 L~Ls~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 86 ILLTSNRL---ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp EECCSSCC---CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EECCCCcc---CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 99999954 444445 78899999999999999977788999999999999999999966688899999999999999
Q ss_pred CcccccCC
Q 038090 162 CNILGKIP 169 (186)
Q Consensus 162 n~~~~~~p 169 (186)
|++....+
T Consensus 163 N~l~c~c~ 170 (220)
T 2v70_A 163 NPFNCNCY 170 (220)
T ss_dssp CCEECSGG
T ss_pred cCCcCCCc
Confidence 99975444
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.8e-20 Score=140.11 Aligned_cols=170 Identities=14% Similarity=0.092 Sum_probs=108.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC-------------
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS------------- 68 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------- 68 (186)
+|++|++++|.+....+..+..+++|+.|++++|. + .+..+ +..+++|++|++++|.+.+
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l---~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--L---YETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--C---EEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--C---Ccchh--hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence 57888888888887777788888888888888888 3 22222 5666666666666665432
Q ss_pred ---------------------------CcccccCCCCCCCeEeeccccccccccCCCC-C-CCCCcccEEEccCCcCCCC
Q 038090 69 ---------------------------AVSPTLTNLSSLIYLSISECSSQDLFGYLPK-S-QKGSLLEDLRLSFTKFLGK 119 (186)
Q Consensus 69 ---------------------------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~ 119 (186)
..+..+..+++|++|++++|.+. ...+. + ..+++|+.|++++|.+...
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC---EEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC---cccHHHHhhccCcCCEEECCCCcCccc
Confidence 22334444555666666665332 22222 2 3456666666666666532
Q ss_pred CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 120 IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 120 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+. ...+++|++|++++|.+. .++..+..+++|++|++++|.++ .+|..+. .++.+ ..+++||
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 185 -KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNG 248 (317)
T ss_dssp -EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCC
T ss_pred -cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCC
Confidence 22 224677778888888777 55666778888888888888887 7777654 44543 4455554
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=141.91 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=115.4
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhH--HHHcCCccceEEeccccCCCCccc----ccC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSN--LAKKLTNLIEIYLIDVDTSSAVSP----TLT 75 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~ 75 (186)
+|++|++++|.+....+..+..+++|++|++++|.+.. ...++. .+..+++|++|++++|.++. .+. .++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG---ERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH---HHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc---chhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 57788888888877666777888888888888887210 111221 23567888888888888763 232 356
Q ss_pred CCCCCCeEeeccccccccccCCCC-CCCC---CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhcc
Q 038090 76 NLSSLIYLSISECSSQDLFGYLPK-SQKG---SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKL 151 (186)
Q Consensus 76 ~l~~L~~L~l~~~~l~~~~~~~~~-~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 151 (186)
.+++|++|++++|. +.+..|. +..+ ++|+.|++++|.+. .+|..+. ++|++|++++|.++ .+|. +..+
T Consensus 222 ~l~~L~~L~Ls~N~---l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l 293 (310)
T 4glp_A 222 AGVQPHSLDLSHNS---LRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDEL 293 (310)
T ss_dssp HTCCCSSEECTTSC---CCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-TTSC
T ss_pred cCCCCCEEECCCCC---CCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-hhhC
Confidence 78899999999994 4444454 4444 69999999999998 6787765 89999999999999 4454 6788
Q ss_pred CCCCEEeccCCcccc
Q 038090 152 NSLKTFDISSCNILG 166 (186)
Q Consensus 152 ~~L~~l~l~~n~~~~ 166 (186)
++|++|++++|++++
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999999973
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.4e-18 Score=124.31 Aligned_cols=158 Identities=18% Similarity=0.107 Sum_probs=133.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++++.......+..+++|++|++++|. + ....+..+..+++|++|++++|.+.+..+..|..+++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--L---QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--C---CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--c---CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 57899999999987766778899999999999999 4 333344568899999999999999977677789999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+|++++|.+ ....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ .+++|+.++++
T Consensus 104 ~L~L~~N~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~ 173 (208)
T 2o6s_A 104 ELALNTNQL---QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEW 173 (208)
T ss_dssp EEECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHH
T ss_pred EEEcCCCcC---cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHH
Confidence 999999954 333344 7889999999999999986666668899999999999997774 35678999999
Q ss_pred CCcccccCChhHHH
Q 038090 161 SCNILGKIPTSLLI 174 (186)
Q Consensus 161 ~n~~~~~~p~~~~~ 174 (186)
.|.++|.+|.+++.
T Consensus 174 ~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 174 INKHSGVVRNSAGS 187 (208)
T ss_dssp HHHCTTTBBCTTSS
T ss_pred HHhCCceeeccCcc
Confidence 99999999998873
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-19 Score=145.78 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=106.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCC--------------
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTS-------------- 67 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------------- 67 (186)
+|+.|++++|.+....+..|..+++|+.|++++|. + .+..+ +..+++|++|++++|.+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l---~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--L---YETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--C---EEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--C---CCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence 57889999998887777788889999999999998 3 22222 556666666665555433
Q ss_pred --------------------------CCcccccCCCCCCCeEeeccccccccccCCCC-CC-CCCcccEEEccCCcCCCC
Q 038090 68 --------------------------SAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ-KGSLLEDLRLSFTKFLGK 119 (186)
Q Consensus 68 --------------------------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~ 119 (186)
+..|..++.+++|++|++++|. +.+..|. +. .+++|+.|++++|.+.+.
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE---IDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC---CCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC---CCCcChHHHhhhCCcccEEecCCCccccc
Confidence 3333444555555566665552 2232333 32 455666666666665532
Q ss_pred CCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 120 IPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 120 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+. ...+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+. .++.+ ..+++||
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~-~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNG 248 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCC
T ss_pred -cc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCc-ccchhhc-cCCCCCEEEcCCCC
Confidence 21 234677777777777777 45555777788888888888887 5776654 34443 4455554
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=145.83 Aligned_cols=158 Identities=22% Similarity=0.158 Sum_probs=123.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++.+....+..|+.+++|+.|++++|. + ....+..+.++++|++|++++|.+.+..+..|+.+++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--I---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCc--C---CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccc
Confidence 57788888888877767788888899999999888 4 444455678888899999988888876677888888899
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCC----C
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL----K 155 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L----~ 155 (186)
+|++++|.+. ...+. ++.+++|+.|++++|.+.. .+|..++.+++|++|++++|.+.+..+..++.+++| .
T Consensus 104 ~L~L~~n~l~---~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 104 KLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp EEECTTSCCC---CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccccccccc---cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 9998888443 22222 7788888899998888875 368888888889999999888885556667777777 7
Q ss_pred EEeccCCccccc
Q 038090 156 TFDISSCNILGK 167 (186)
Q Consensus 156 ~l~l~~n~~~~~ 167 (186)
++++++|.+.+.
T Consensus 181 ~L~l~~n~l~~~ 192 (570)
T 2z63_A 181 SLDLSLNPMNFI 192 (570)
T ss_dssp EEECTTCCCCEE
T ss_pred hcccCCCCceec
Confidence 888888888733
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=9.8e-19 Score=141.58 Aligned_cols=172 Identities=23% Similarity=0.214 Sum_probs=97.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHH---HHcCCccceEEeccccCCCCcc--cccCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNL---AKKLTNLIEIYLIDVDTSSAVS--PTLTN 76 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~~~ 76 (186)
+|++|+++++.+.......+..+++|+.|++++|. + .+.++.. +..+++|+.|++++|.+++..+ ..+..
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~--l---~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 385 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL--M---VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC--C---CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCCc--c---ccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence 35566666666553322223466777777777776 3 3333221 3445566666666665553221 33555
Q ss_pred CCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc------------------cCCCCCCCEEEcCC
Q 038090 77 LSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS------------------LGNLTNLEDRYLSD 137 (186)
Q Consensus 77 l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~------------------~~~l~~L~~L~L~~ 137 (186)
+++|++|++++|.++ .+|. +..+++|+.|++++|.+. .+|.. +..+++|++|++++
T Consensus 386 l~~L~~L~Ls~N~l~----~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 386 LKNLTSLDISRNTFH----PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460 (549)
T ss_dssp CTTCCEEECTTCCCC----CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred CCCCCEEECCCCCCc----cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCC
Confidence 556666666665332 2343 444445555555555443 11111 13567888888888
Q ss_pred CcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 138 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
|.++ .+|. ...+++|++|++++|+++ .+|......++.+ ..+++||
T Consensus 461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 461 NKLK-TLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SCCS-SCCC-GGGCTTCCEEECCSSCCC-CCCTTGGGGCTTCCEEECCSSC
T ss_pred CccC-cCCC-cccCccCCEEecCCCccC-CcCHHHHhcCcccCEEEecCCC
Confidence 8887 6776 456788888888888888 4554444466654 5566665
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=2.3e-19 Score=146.99 Aligned_cols=132 Identities=22% Similarity=0.189 Sum_probs=74.4
Q ss_pred ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCC
Q 038090 26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGS 104 (186)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~ 104 (186)
+++.|||++|. + ....+..|.++++|++|++++|.+++..++.|.++++|++|++++|.++ .-.+. +..++
T Consensus 53 ~~~~LdLs~N~--i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNLDLSFNP--L---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---SLALGAFSGLS 124 (635)
T ss_dssp TCCEEECTTSC--C---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---EECGGGGTTCT
T ss_pred CCCEEEeeCCC--C---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---CCCHHHhcCCC
Confidence 55666666666 2 2222334566666666666666665544555666666666666666332 11122 55566
Q ss_pred cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC-CCchhhhccCCCCEEeccCCccc
Q 038090 105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG-ELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+|+.|++++|.+....+..|+.+++|++|++++|.+.. ..|..++.+++|++|++++|+++
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 66666666666654444455666666666666666553 23455556666666666666665
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.4e-18 Score=131.61 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=68.8
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|+++++++... +.+..+++|+.|++++|. + ..++. +..+++|++|++++|.+.+. + .+..+++|++
T Consensus 43 L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~--i----~~~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 43 ITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--I----TDLAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT 111 (308)
T ss_dssp CCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred cCEEEeeCCCccCc--hhhhccCCCCEEEccCCc--C----CCChh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence 45555555554432 234555555555555555 2 12222 44455555555555544431 1 3444444444
Q ss_pred Eeeccccccccc------------------cCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038090 83 LSISECSSQDLF------------------GYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144 (186)
Q Consensus 83 L~l~~~~l~~~~------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 144 (186)
|++++|.+.... ..++.+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .+
T Consensus 112 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~ 188 (308)
T 1h6u_A 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS-DI 188 (308)
T ss_dssp EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CC
T ss_pred EECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC-cC
Confidence 444444322110 011113444555555555555542 222 455555555555555555 33
Q ss_pred chhhhccCCCCEEeccCCccc
Q 038090 145 PTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 145 ~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+. +..+++|++|++++|.++
T Consensus 189 ~~-l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp GG-GGGCTTCCEEECTTSCCC
T ss_pred hh-hcCCCCCCEEEccCCccC
Confidence 32 555556666666666655
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=153.84 Aligned_cols=163 Identities=19% Similarity=0.157 Sum_probs=131.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccch-hHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGL-SNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
+++.|++++|.+....+..|..+++|+.|++++|. . ...+ +..+.++++|++|++++|.+.+..|+.|+.+++|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~--~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY--T---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC--C---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCC--C---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 67899999999887778889999999999999996 3 3444 6678899999999999999988778899999999
Q ss_pred CeEeeccccccccccCCCC---CCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCchhhhcc--CCC
Q 038090 81 IYLSISECSSQDLFGYLPK---SQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPTSLGKL--NSL 154 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~L 154 (186)
++|++++|. ..+.++. +..+++|+.|++++|.+.+..+ ..++.+++|++|++++|.+.+..+..+..+ ++|
T Consensus 100 ~~L~Ls~n~---l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L 176 (844)
T 3j0a_A 100 FELRLYFCG---LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTL 176 (844)
T ss_dssp CCEECTTCC---CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSS
T ss_pred CEeeCcCCC---CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCcc
Confidence 999999994 4443332 7888999999999999876544 578899999999999999887667767665 667
Q ss_pred CEEeccCCcccccCChhH
Q 038090 155 KTFDISSCNILGKIPTSL 172 (186)
Q Consensus 155 ~~l~l~~n~~~~~~p~~~ 172 (186)
+.+++++|.+.+..|..+
T Consensus 177 ~~L~L~~n~l~~~~~~~~ 194 (844)
T 3j0a_A 177 SFFSLAANSLYSRVSVDW 194 (844)
T ss_dssp CCCEECCSBSCCCCCCCC
T ss_pred ceEECCCCccccccccch
Confidence 777777776665555443
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.2e-18 Score=130.97 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=109.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|++... +.+..+++|+.|++++|. + ..+++ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 47 ~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~--l----~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK--L----TDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred cccEEEccCCCcccC--hhHhcCCCCCEEEccCCc--c----CCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 467788888877654 457788888888888888 3 23333 7778888888888887765 33 477888888
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|++++|.+.. ++.+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+. .++. +..+++|++|++++
T Consensus 116 ~L~L~~n~i~~----~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~-~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 116 SLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp EEECTTSCCCC----CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCS
T ss_pred EEECCCCcCCC----ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc-cchh-hcCCCccCEEECCC
Confidence 88888885433 23366777788888888877643 45677778888888888777 3444 77777788888888
Q ss_pred CcccccCChhHHHhCCCC
Q 038090 162 CNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 162 n~~~~~~p~~~~~~l~~~ 179 (186)
|.++ .++. + ..++.+
T Consensus 188 N~i~-~l~~-l-~~l~~L 202 (291)
T 1h6t_A 188 NHIS-DLRA-L-AGLKNL 202 (291)
T ss_dssp SCCC-BCGG-G-TTCTTC
T ss_pred CcCC-CChh-h-ccCCCC
Confidence 8776 5543 3 245544
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=8.8e-19 Score=141.11 Aligned_cols=171 Identities=19% Similarity=0.189 Sum_probs=143.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCC--CcccccCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSS--AVSPTLTNLSS 79 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~ 79 (186)
+|+.|+++++++..... +..+++|+.|++++|. + .+..|..+..+++|+.|++++|.+.+ ..|..++.+++
T Consensus 303 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~--l---~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNL--L---TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSC--C---CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred ceeEEEcCCCccccccc--hhhCCcccEEEeECCc--c---ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 48899999998865432 2689999999999999 5 56677788999999999999999986 44577999999
Q ss_pred CCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEE
Q 038090 80 LIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTF 157 (186)
Q Consensus 80 L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l 157 (186)
|++|++++|. +.+.+|. +..+++|+.|++++|.+.+..|..+. ++|++|++++|.++ .+|..+..+++|++|
T Consensus 376 L~~L~Ls~N~---l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L 449 (520)
T 2z7x_B 376 LQQLDISQNS---VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL 449 (520)
T ss_dssp CCEEECCSSC---CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred CCEEECCCCc---CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence 9999999994 4444553 67889999999999999877776654 79999999999999 899888899999999
Q ss_pred eccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 158 DISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 158 ~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
++++|+++ .+|......++.+ ..+++||
T Consensus 450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 99999998 8998855567765 5667776
No 70
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=2.4e-18 Score=131.89 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=106.0
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|++++|.+... +.+..+++|+.+++++|. + . ..+. +..+++|++|++++|.+.+..+ +..+++|++
T Consensus 179 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~--l---~-~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 247 (347)
T 4fmz_A 179 LYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQ--I---T-DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTW 247 (347)
T ss_dssp CSEEECTTSCCCCC--GGGGGCTTCCEEECCSSC--C---C-CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCEEEccCCccccc--ccccCCCccceeecccCC--C---C-CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCE
Confidence 44444444444322 114445555555555554 2 1 1222 5667778888888777765433 777888888
Q ss_pred EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
|++++|.+.. ++.+..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+.+..+..++.+++|+++++++|
T Consensus 248 L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 248 LEIGTNQISD----INAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp EECCSSCCCC----CGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred EECCCCccCC----ChhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence 8888885432 2336777888888888888774 3 34777888888888888888666677888888999999988
Q ss_pred cccccCChhHHHhCCCC--CCCCCCC
Q 038090 163 NILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 163 ~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
+++ .++. ...++.+ .++++||
T Consensus 322 ~l~-~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 322 HIT-DIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp SCC-CCGG--GGGCTTCSEESSSCC-
T ss_pred ccc-cccC--hhhhhccceeehhhhc
Confidence 887 4444 3356654 4555554
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.6e-20 Score=157.79 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=74.4
Q ss_pred hhHHHHcCCccceEEeccccCCC-----------------CcccccC--CCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090 46 LSNLAKKLTNLIEIYLIDVDTSS-----------------AVSPTLT--NLSSLIYLSISECSSQDLFGYLPK-SQKGSL 105 (186)
Q Consensus 46 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~ 105 (186)
+|..+.++++|+.|++++|.+++ .+|..++ .+++|++|++++| .+.+.+|. +..+++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N---~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC---PNMTQLPDFLYDLPE 516 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC---TTCCSCCGGGGGCSS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC---CCCccChHHHhCCCC
Confidence 55566677777777777777766 2566655 7777777777777 44556666 666667
Q ss_pred ccEEEccCCc-CCC-CCCcccCC-------CCCCCEEEcCCCcCCCCCch--hhhccCCCCEEeccCCcccccCC
Q 038090 106 LEDLRLSFTK-FLG-KIPPSLGN-------LTNLEDRYLSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 106 L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~L~~n~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
|+.|++++|. +.+ .+|..++. +++|++|++++|.+. .+|. .++.+++|++|++++|.++ .+|
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 7777777666 554 34443332 236666666666666 5555 5666666666666666665 555
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=7.3e-19 Score=148.95 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=115.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCC-cccccccc-chhHHHHcCC-------ccceEEeccccCCCCccc
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNH-FAFKLQKS-GLSNLAKKLT-------NLIEIYLIDVDTSSAVSP 72 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~ 72 (186)
+|+.|++++|.+....+..+..+++|+.|++++|. + .+ .+|..+..+. +|+.|++++|.+. .+|.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-----sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-----SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-----CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-----ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 57888888888777777888888999999999886 3 33 5676666555 8888888888887 5676
Q ss_pred --ccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCC-CCEEEcCCCcCCCCCchhhh
Q 038090 73 --TLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTN-LEDRYLSDNGFSGELPTSLG 149 (186)
Q Consensus 73 --~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~ 149 (186)
.++.+++|++|++++|.+. .+|.+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~----~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR----HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC----BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred hhhhhcCCCCCEEECCCCCcc----cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 7888888888888888443 4445667777777777777776 66666666666 777777777666 5554333
Q ss_pred cc-------------------------------CCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 150 KL-------------------------------NSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 150 ~~-------------------------------~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
.+ ++|++|++++|.++ .+|..++..++.+
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L 699 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI 699 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC
Confidence 22 24556666666665 5666666555544
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=3e-18 Score=129.80 Aligned_cols=134 Identities=21% Similarity=0.271 Sum_probs=102.1
Q ss_pred hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090 19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP 98 (186)
Q Consensus 19 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 98 (186)
...+++++|+.|++++|. + ..++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.. ++
T Consensus 35 ~~~~~l~~L~~L~l~~~~--i----~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~----~~ 101 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTG--V----TTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN----VS 101 (308)
T ss_dssp ECHHHHHTCCEEECTTSC--C----CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC----CG
T ss_pred ecHHHcCCcCEEEeeCCC--c----cCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC----ch
Confidence 345789999999999999 3 3344 57889999999999999886444 9999999999999996543 23
Q ss_pred CCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCCh
Q 038090 99 KSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 99 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~ 170 (186)
.+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .++. ++.+++|++|++++|.++ .++.
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~ 168 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTP 168 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCC-CCGG
T ss_pred hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCC-CChh
Confidence 47778888888888888874 333 777788888888888777 4443 666777777777777776 4444
No 74
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.6e-18 Score=124.92 Aligned_cols=147 Identities=19% Similarity=0.226 Sum_probs=123.1
Q ss_pred ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC-C-CCCC
Q 038090 26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP-K-SQKG 103 (186)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~-~~~~ 103 (186)
.-+.++.+++. ...+|..+ .++|+.|++++|.+.+..+..|..+++|++|++++|.+. .++ . +..+
T Consensus 20 s~~~v~c~~~~------l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~----~i~~~~~~~l 87 (229)
T 3e6j_A 20 SGTTVDCRSKR------HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG----ALPVGVFDSL 87 (229)
T ss_dssp ETTEEECTTSC------CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTC
T ss_pred eCCEeEccCCC------cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC----CcChhhcccC
Confidence 35678999888 34555433 389999999999999888889999999999999999542 333 3 6889
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCC--CC
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS--VA 181 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~--~~ 181 (186)
++|+.|++++|.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|......++.+ ..
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEE
Confidence 99999999999998666677889999999999999999 88998999999999999999998 8887766677765 55
Q ss_pred CCCCC
Q 038090 182 LSSTP 186 (186)
Q Consensus 182 l~~~~ 186 (186)
+++||
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 67776
No 75
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=1.7e-18 Score=140.90 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=133.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcc-cccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 80 (186)
+|+.|++++|.+....+..+..+++|+.|++++|.+.- ....|..+..+++|++|++++|.+.+..| ..+..+++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN---FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB---TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC---cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 67889999999887778888999999999999999321 12456678899999999999999997444 468899999
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchh-hhccCCCCEEe
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTS-LGKLNSLKTFD 158 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~l~ 158 (186)
++|++++|. +.+.+|. +. ++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++++
T Consensus 431 ~~L~l~~n~---l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 431 LVLNLSSNM---LTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CEEECCSSC---CCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred CEEECCCCC---CCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 999999994 4455554 32 68999999999998 78888889999999999999999 78876 88999999999
Q ss_pred ccCCcccccCC
Q 038090 159 ISSCNILGKIP 169 (186)
Q Consensus 159 l~~n~~~~~~p 169 (186)
+++|++.+..+
T Consensus 504 l~~N~~~c~c~ 514 (562)
T 3a79_B 504 LHDNPWDCTCP 514 (562)
T ss_dssp CCSCCBCCCHH
T ss_pred ecCCCcCCCcc
Confidence 99999986554
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=137.13 Aligned_cols=89 Identities=20% Similarity=0.109 Sum_probs=70.7
Q ss_pred cCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090 74 LTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN 152 (186)
Q Consensus 74 ~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 152 (186)
+..+++|++|++++| .+....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..++
T Consensus 203 ~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 203 LTPLIKLDELDLSGN---HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp CTTCSSCCEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred cCCCcccCEEECCCC---ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 344455555555555 23333355 88999999999999999977888899999999999999999954455678899
Q ss_pred CCCEEeccCCccc
Q 038090 153 SLKTFDISSCNIL 165 (186)
Q Consensus 153 ~L~~l~l~~n~~~ 165 (186)
+|+++++++|++.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 9999999999874
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.9e-18 Score=128.21 Aligned_cols=150 Identities=26% Similarity=0.290 Sum_probs=126.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+....+ +..+++|+.|++++|. + ..++ .+..+++|++|++++|.+.+. +.+..+++|+
T Consensus 69 ~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~--l----~~~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 69 NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK--V----KDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC--C----CCGG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred CCCEEEccCCccCCCcc--cccCCCCCEEECCCCc--C----CCCh-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 68899999999876533 8999999999999999 3 3344 488899999999999998863 4788999999
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|++++|.+... +.+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|+.|++++
T Consensus 138 ~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~-~l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 138 SLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp EEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCGG-GTTCTTCSEEEEEE
T ss_pred EEEccCCcCCcc----hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC-CChh-hccCCCCCEEECcC
Confidence 999999965432 347889999999999999985444 889999999999999999 5654 88999999999999
Q ss_pred CcccccCChh
Q 038090 162 CNILGKIPTS 171 (186)
Q Consensus 162 n~~~~~~p~~ 171 (186)
|+++ ..|..
T Consensus 210 n~i~-~~~~~ 218 (291)
T 1h6t_A 210 QECL-NKPIN 218 (291)
T ss_dssp EEEE-CCCEE
T ss_pred Cccc-CCccc
Confidence 9997 45543
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=8.5e-19 Score=135.54 Aligned_cols=155 Identities=18% Similarity=0.071 Sum_probs=127.6
Q ss_pred CccceecccccccCcChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
.++.|++++|.+.......+. .+++|+.|++++|. + ....+..|.++++|+.|++++|.+....+..|..+++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--L---NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--C---CccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 468899999999877777777 99999999999999 4 44445568899999999999999997777789999999
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc-c---CCCCCCCEEEcCCCcCCCCCchhhhccCC--
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS-L---GNLTNLEDRYLSDNGFSGELPTSLGKLNS-- 153 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~---~~l~~L~~L~L~~n~~~~~~~~~~~~~~~-- 153 (186)
++|++++|.+ ....+. +..+++|+.|++++|.+.. +|.. + ..+++|++|++++|.+.+..+..+..++.
T Consensus 115 ~~L~L~~N~i---~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 115 EVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CEEECCSSCC---CEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CEEECCCCcc---cEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 9999999954 333455 8899999999999999984 5544 4 56899999999999999433356777776
Q ss_pred CCEEeccCCccc
Q 038090 154 LKTFDISSCNIL 165 (186)
Q Consensus 154 L~~l~l~~n~~~ 165 (186)
++.+++++|++.
T Consensus 191 l~~l~l~~N~~~ 202 (361)
T 2xot_A 191 KNGLYLHNNPLE 202 (361)
T ss_dssp HTTEECCSSCEE
T ss_pred cceEEecCCCcc
Confidence 489999999885
No 79
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.9e-18 Score=137.19 Aligned_cols=89 Identities=19% Similarity=0.085 Sum_probs=70.2
Q ss_pred cCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC
Q 038090 74 LTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN 152 (186)
Q Consensus 74 ~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 152 (186)
+..+++|++|++++| .+.+..|. +..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..++
T Consensus 214 ~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 214 LTPLVGLEELEMSGN---HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp CTTCTTCCEEECTTS---CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred ccccccccEEECcCC---cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 344445555555555 23333455 78899999999999999877888899999999999999999954455678899
Q ss_pred CCCEEeccCCccc
Q 038090 153 SLKTFDISSCNIL 165 (186)
Q Consensus 153 ~L~~l~l~~n~~~ 165 (186)
+|+++++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 9999999999875
No 80
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=2.3e-18 Score=124.46 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=117.0
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+++.|+++++.+....+..|..+++|+.|++++|. + ....+..|.++++|+.|++++|.++...+..|..+++|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i---~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--I---SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--C---CEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--C---CCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 57899999999987777789999999999999999 4 455577899999999999999999977667789999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 142 (186)
+|++++|. +....+. +..+++|+.|++++|.+....+..+..+++|+++++++|.+.+
T Consensus 108 ~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 108 LLLLNANK---INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCC---CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999994 4444455 8899999999999999997777789999999999999999875
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.77 E-value=3.5e-19 Score=130.11 Aligned_cols=160 Identities=15% Similarity=0.092 Sum_probs=129.2
Q ss_pred Cccceeccccc-ccCcChhhHHhhcccCeeeCCC-CCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCC
Q 038090 2 SQRKINEQDFG-VETSNISRVARALQLGVLDLSY-NHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSS 79 (186)
Q Consensus 2 ~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 79 (186)
+|+.|++++|. +.......|..+++|+.|++++ |. + ....+..+.++++|++|++++|.+.+ .|. +..+++
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l---~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~ 128 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--L---TYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS 128 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--C---CEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--e---eEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence 68899999997 8777667889999999999998 88 3 33334567889999999999999986 555 888888
Q ss_pred CC---eEeeccc-cccccccCCCC-CCCCCccc-EEEccCCcCCCCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhcc-
Q 038090 80 LI---YLSISEC-SSQDLFGYLPK-SQKGSLLE-DLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKL- 151 (186)
Q Consensus 80 L~---~L~l~~~-~l~~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~- 151 (186)
|+ +|++++| .+.... +. +..+++|+ .|++++|.+. .+|......++|++|++++|+ +++..+..+..+
T Consensus 129 L~~L~~L~l~~N~~l~~i~---~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIP---VNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CCSEEEEEEESCTTCCEEC---TTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred cccccEEECCCCcchhhcC---cccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence 88 9999999 654322 23 78889999 9999999998 555544444899999999995 883334568888
Q ss_pred CCCCEEeccCCcccccCChhHH
Q 038090 152 NSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 152 ~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
++|+++++++|+++ .+|....
T Consensus 205 ~~L~~L~l~~N~l~-~l~~~~~ 225 (239)
T 2xwt_C 205 SGPSLLDVSQTSVT-ALPSKGL 225 (239)
T ss_dssp BCCSEEECTTCCCC-CCCCTTC
T ss_pred cCCcEEECCCCccc-cCChhHh
Confidence 99999999999998 8887743
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=3.7e-18 Score=126.59 Aligned_cols=144 Identities=22% Similarity=0.215 Sum_probs=85.9
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|++... +.+..+++|+.|++++|. + ..+++ +..+++|+.|++++|.+.+ .+.. .. ++|+
T Consensus 42 ~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~--i----~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~ 109 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQ--I----SDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS 109 (263)
T ss_dssp TCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSC--C----CCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred cCcEEECcCCCcccc--hHHhhCCCCCEEECCCCc--c----CCChh-hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence 456666666665543 255666666666666666 2 22333 5666666666666666654 2222 22 6666
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|++++|.++. ++.+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 110 ~L~L~~N~l~~----~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 110 RLFLDNNELRD----TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp EEECCSSCCSB----SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred EEEccCCccCC----ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 66666664332 2235666667777777776653 23 456667777777777776633 4466667777777777
Q ss_pred Cccc
Q 038090 162 CNIL 165 (186)
Q Consensus 162 n~~~ 165 (186)
|.+.
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 7665
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=9.9e-20 Score=141.76 Aligned_cols=177 Identities=15% Similarity=0.106 Sum_probs=108.8
Q ss_pred CccceecccccccCc----ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcC---------CccceEEeccccCCC
Q 038090 2 SQRKINEQDFGVETS----NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL---------TNLIEIYLIDVDTSS 68 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~~~ 68 (186)
+|+.|++++|.+... .+..+..+++|+.|++++|.+.. .....++..+..+ ++|++|++++|.+..
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP-QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH-HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH-HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 456677777666542 34455667777777777776210 0001223333334 677777777776652
Q ss_pred -Ccc---cccCCCCCCCeEeeccccccc--cccCCCC-CCCCCcccEEEccCCcCC----CCCCcccCCCCCCCEEEcCC
Q 038090 69 -AVS---PTLTNLSSLIYLSISECSSQD--LFGYLPK-SQKGSLLEDLRLSFTKFL----GKIPPSLGNLTNLEDRYLSD 137 (186)
Q Consensus 69 -~~~---~~~~~l~~L~~L~l~~~~l~~--~~~~~~~-~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~ 137 (186)
..+ ..+..+++|++|++++|.+.. .....+. +..+++|+.|++++|.+. ..+|..+..+++|++|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 223 345566777777777775431 0012332 567777888888888774 34566677778888888888
Q ss_pred CcCCCC----Cchhhh--ccCCCCEEeccCCcccc----cCChhHHHhCCCC
Q 038090 138 NGFSGE----LPTSLG--KLNSLKTFDISSCNILG----KIPTSLLIRLPPS 179 (186)
Q Consensus 138 n~~~~~----~~~~~~--~~~~L~~l~l~~n~~~~----~~p~~~~~~l~~~ 179 (186)
|.+.+. ++..+. .+++|++|++++|.+++ .+|..+...++.+
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L 305 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc
Confidence 887743 344453 37788888888888875 3777776566665
No 84
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=4.4e-18 Score=120.90 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=124.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|+++++++... +.+..+++|+.|++++|. + ..+ ..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus 45 ~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~--~----~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 45 SLTYITLANINVTDL--TGIEYAHNIKDLTINNIH--A----TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp TCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCC--C----SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred CccEEeccCCCccCh--HHHhcCCCCCEEEccCCC--C----Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 578999999998743 268999999999999998 3 333 3678899999999999999877788999999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
+|++++|. +....+. +..+++|+.|++++|. +. .++ .+..+++|++|++++|.+. .++ .+..+++|++|++
T Consensus 116 ~L~Ls~n~---i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 116 LLDISHSA---HDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYA 188 (197)
T ss_dssp EEECCSSB---CBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEE
T ss_pred EEEecCCc---cCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEe
Confidence 99999994 4444455 8899999999999998 65 555 6889999999999999999 555 6889999999999
Q ss_pred cCCccc
Q 038090 160 SSCNIL 165 (186)
Q Consensus 160 ~~n~~~ 165 (186)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 999985
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=7.7e-19 Score=133.48 Aligned_cols=158 Identities=15% Similarity=0.074 Sum_probs=124.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccccc-CCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTL-TNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L 80 (186)
+|+.|++++|.+...... .+++|+.|++++|. + ....+..+..+++|+.|++++|.+.+..+..+ ..+++|
T Consensus 100 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~--l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 171 (317)
T 3o53_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNK--I---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (317)
T ss_dssp TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSC--C---CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CcCEEECCCCccCCcCcc---ccCCCCEEECCCCC--C---CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC
Confidence 456666666665543322 36788899999998 4 34444567889999999999999987666666 478999
Q ss_pred CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
++|++++|.++.. +....+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++++++
T Consensus 172 ~~L~L~~N~l~~~----~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 172 EHLNLQYNFIYDV----KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp CEEECTTSCCCEE----ECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred CEEECCCCcCccc----ccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 9999999965433 33456889999999999998 56666889999999999999999 788889999999999999
Q ss_pred CCccc-ccCChhHH
Q 038090 161 SCNIL-GKIPTSLL 173 (186)
Q Consensus 161 ~n~~~-~~~p~~~~ 173 (186)
+|++. +.+|..+.
T Consensus 246 ~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 246 GNGFHCGTLRDFFS 259 (317)
T ss_dssp TCCCBHHHHHHHHH
T ss_pred CCCccCcCHHHHHh
Confidence 99998 55555443
No 86
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=4e-18 Score=139.61 Aligned_cols=164 Identities=22% Similarity=0.154 Sum_probs=135.7
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
++++|++++|.++...+..|.++++|++||+++|. + ....+..|.++++|++|++++|++++..++.|.++++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i---~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--I---QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--C---CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--C---CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 57899999999998877889999999999999999 4 343455689999999999999999977677899999999
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCC-CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCC----CC
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLG-KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNS----LK 155 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~----L~ 155 (186)
+|++++|.+. .-.+. ++.+++|+.|++++|.+.. ..|..++.+++|++|++++|.+.+..+..+..+.+ ..
T Consensus 128 ~L~Ls~N~l~---~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 128 KLVAVETNLA---SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp EEECTTSCCC---CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred EEECCCCcCC---CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 9999999543 33334 8899999999999999864 36788889999999999999999655666665543 45
Q ss_pred EEeccCCcccccCChhHHH
Q 038090 156 TFDISSCNILGKIPTSLLI 174 (186)
Q Consensus 156 ~l~l~~n~~~~~~p~~~~~ 174 (186)
.++++.|.+. .++.....
T Consensus 205 ~~~ls~n~l~-~i~~~~~~ 222 (635)
T 4g8a_A 205 SLDLSLNPMN-FIQPGAFK 222 (635)
T ss_dssp EEECTTCCCC-EECTTTTT
T ss_pred hhhcccCccc-ccCccccc
Confidence 7899999997 66665543
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=4.9e-19 Score=135.14 Aligned_cols=173 Identities=20% Similarity=0.162 Sum_probs=98.4
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCC-CccccccccchhHHHHcCCccceEEeccc-cCCCC-cccccCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYN-HFAFKLQKSGLSNLAKKLTNLIEIYLIDV-DTSSA-VSPTLTNLS 78 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~ 78 (186)
+|++|++++|.+....+..++.+++|+.|++++| .+. ...++..+..+++|++|++++| .+++. .+..+..++
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~----~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS----EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC----HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC----HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 4566666666655444555666666666666666 311 1134555666666666666666 55532 344555666
Q ss_pred -CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCc-CCCCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhccCCC
Q 038090 79 -SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKLNSL 154 (186)
Q Consensus 79 -~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L 154 (186)
+|++|++++|.+.--...++. +..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......++.+++|
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L 274 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 274 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCC
Confidence 677777766621000123333 4566777777777776 554556666777777777777774 221222246667777
Q ss_pred CEEeccCCcccccCChhHHHhCCCC
Q 038090 155 KTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 155 ~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
++|++++| ++.+.-..+.+.++.+
T Consensus 275 ~~L~l~~~-i~~~~~~~l~~~l~~L 298 (336)
T 2ast_B 275 KTLQVFGI-VPDGTLQLLKEALPHL 298 (336)
T ss_dssp CEEECTTS-SCTTCHHHHHHHSTTS
T ss_pred CEEeccCc-cCHHHHHHHHhhCcce
Confidence 77777777 5433334444445543
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.5e-17 Score=136.35 Aligned_cols=147 Identities=23% Similarity=0.255 Sum_probs=99.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+... +.+..|++|+.|+|++|. + ..+++ +..+++|+.|++++|.+.+ ++ .+..+++|+
T Consensus 44 ~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~--l----~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNK--L----TDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp TCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSC--C----CCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred CCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCC--C----CCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 567778888777653 357788888888888887 3 22333 6777888888888887764 23 677777788
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|++++|.+.. ++.+..+++|+.|++++|.+.+. ..+..+++|++|+|++|.+.+ ++. +..+++|+.|++++
T Consensus 113 ~L~Ls~N~l~~----l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 113 SLSLEHNGISD----INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSK 184 (605)
T ss_dssp EEECTTSCCCC----CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCS
T ss_pred EEEecCCCCCC----CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-chh-hccCCCCCEEECcC
Confidence 88887775432 23366677777777777777633 456677777777777777763 333 66677777777777
Q ss_pred CcccccC
Q 038090 162 CNILGKI 168 (186)
Q Consensus 162 n~~~~~~ 168 (186)
|.++ .+
T Consensus 185 N~i~-~l 190 (605)
T 1m9s_A 185 NHIS-DL 190 (605)
T ss_dssp SCCC-BC
T ss_pred CCCC-CC
Confidence 7776 44
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.76 E-value=3.3e-18 Score=118.47 Aligned_cols=136 Identities=25% Similarity=0.200 Sum_probs=114.1
Q ss_pred hcccCeeeCCCCCccccccc-cchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CC
Q 038090 24 ALQLGVLDLSYNHFAFKLQK-SGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQ 101 (186)
Q Consensus 24 l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~ 101 (186)
.++|+.|++++|. + . +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+ ...+|. +.
T Consensus 23 ~~~L~~L~l~~n~--l---~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNCK--S---NDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI---FGGLDMLAE 92 (168)
T ss_dssp TTSCSEEECCSCB--C---BTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCC---CSCCCHHHH
T ss_pred cccCCEEECCCCC--C---ChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcC---chHHHHHHh
Confidence 4789999999999 3 3 46777778899999999999998865 7889999999999999944 444666 66
Q ss_pred CCCcccEEEccCCcCCCCC-CcccCCCCCCCEEEcCCCcCCCCCch----hhhccCCCCEEeccCCcccccCChh
Q 038090 102 KGSLLEDLRLSFTKFLGKI-PPSLGNLTNLEDRYLSDNGFSGELPT----SLGKLNSLKTFDISSCNILGKIPTS 171 (186)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~~~L~~l~l~~n~~~~~~p~~ 171 (186)
.+++|+.|++++|.+.+.. +..+..+++|++|++++|.+. ..+. .+..+++|++|++++|.+. ++|.+
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7999999999999998432 278889999999999999999 4444 6889999999999999997 77764
No 90
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=121.90 Aligned_cols=135 Identities=15% Similarity=0.059 Sum_probs=116.2
Q ss_pred CccceecccccccCcCh-hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 2 SQRKINEQDFGVETSNI-SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
.++.|+++++.+....+ ..|..+++|+.|++++|. + ....+..+.++++|++|++++|.+++..+..|..+++|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i---~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--I---TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--C---CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--C---CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 46789999999886643 458899999999999999 4 44445578999999999999999998878889999999
Q ss_pred CeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCC
Q 038090 81 IYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGEL 144 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 144 (186)
++|++++|. +....|. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.-
T Consensus 108 ~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 108 KTLMLRSNR---ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CEEECTTSC---CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CEEECCCCc---CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 999999994 4444456 889999999999999999777899999999999999999998653
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=5.3e-17 Score=124.45 Aligned_cols=164 Identities=20% Similarity=0.198 Sum_probs=107.9
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|++++|.+... ..+..+++|+.|++++|. + ..++. +..+++|+.+++++|.+.+..+ +..+++|++
T Consensus 157 L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~--l----~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 225 (347)
T 4fmz_A 157 LNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQ--I----EDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225 (347)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECTTSC--C----CCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred CcEEEecCCCcCCc--hhhccCCCCCEEEccCCc--c----ccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCE
Confidence 44555555544332 125556666666666665 2 22222 5556666666666666554322 677788888
Q ss_pred EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
|++++|.+.. ++.+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+. .+ ..+..+++|++|++++|
T Consensus 226 L~l~~n~l~~----~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~-~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 226 LKIGNNKITD----LSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQIS-DI-SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp EECCSSCCCC----CGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSS
T ss_pred EEccCCccCC----CcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccC-CC-hhhcCCCCCCEEECcCC
Confidence 8888885432 2226778889999999988874 3 45788899999999999888 44 44888999999999999
Q ss_pred cccccCChhHHHhCCCC--CCCCCCC
Q 038090 163 NILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 163 ~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
.+++..|..+. .++.+ ..+++|+
T Consensus 298 ~l~~~~~~~l~-~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 298 QLGNEDMEVIG-GLTNLTTLFLSQNH 322 (347)
T ss_dssp CCCGGGHHHHH-TCTTCSEEECCSSS
T ss_pred cCCCcChhHhh-ccccCCEEEccCCc
Confidence 99855444444 67765 4455553
No 92
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=145.32 Aligned_cols=166 Identities=19% Similarity=0.117 Sum_probs=140.0
Q ss_pred Cccceeccccccc-CcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccc--cCCCC
Q 038090 2 SQRKINEQDFGVE-TSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPT--LTNLS 78 (186)
Q Consensus 2 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~ 78 (186)
+|+.|++++|... ...+..|.++++|++|++++|. + ....|..+.++.+|++|++++|.+.+..+.. ++.++
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l---~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--I---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--C---CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--C---cccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 6899999999544 4447789999999999999999 5 5556788999999999999999998765544 89999
Q ss_pred CCCeEeeccccccccccCCC-C-CCCCCcccEEEccCCcCCCCCCcccCCC--CCCCEEEcCCCcCCCCCchhhhccCC-
Q 038090 79 SLIYLSISECSSQDLFGYLP-K-SQKGSLLEDLRLSFTKFLGKIPPSLGNL--TNLEDRYLSDNGFSGELPTSLGKLNS- 153 (186)
Q Consensus 79 ~L~~L~l~~~~l~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~~~~- 153 (186)
+|++|++++|.+ .+..+ . ++.+++|+.|++++|.+....+..+..+ ++|+.|+++.|.+.+..+..++.+.+
T Consensus 124 ~L~~L~Ls~N~l---~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 124 ALTRLDLSKNQI---RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCCEEEEESCCC---CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred CCCEEECCCCcc---cccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 999999999954 34333 4 8899999999999999988888888877 89999999999999877777766655
Q ss_pred -----CCEEeccCCcccccCChhHHHh
Q 038090 154 -----LKTFDISSCNILGKIPTSLLIR 175 (186)
Q Consensus 154 -----L~~l~l~~n~~~~~~p~~~~~~ 175 (186)
|++|++++|.+++.+|..+...
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred cccCceeEEecCCCcCchhHHHHHHhh
Confidence 9999999999988888877654
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.8e-18 Score=138.65 Aligned_cols=158 Identities=15% Similarity=0.070 Sum_probs=127.6
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccC-CCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT-NLSSL 80 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L 80 (186)
+|+.|++++|.+....+. .+++|+.|++++|. + .+..+..+..+++|+.|++++|.+++..|..+. .+++|
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~--l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNK--I---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSC--C---CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCC--C---CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 466677777766544332 46789999999998 4 455566788899999999999999987777776 79999
Q ss_pred CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
++|++++|.++.. +....+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.+++|++++++
T Consensus 172 ~~L~Ls~N~l~~~----~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 172 EHLNLQYNFIYDV----KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CEEECTTSCCCEE----ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred cEEecCCCccccc----cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcC
Confidence 9999999965433 345568999999999999984 5666889999999999999999 688889999999999999
Q ss_pred CCccc-ccCChhHH
Q 038090 161 SCNIL-GKIPTSLL 173 (186)
Q Consensus 161 ~n~~~-~~~p~~~~ 173 (186)
+|.+. +.+|..+.
T Consensus 246 ~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 246 GNGFHCGTLRDFFS 259 (487)
T ss_dssp TCCBCHHHHHHHHT
T ss_pred CCCCcCcchHHHHH
Confidence 99997 55555443
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.5e-17 Score=123.33 Aligned_cols=155 Identities=23% Similarity=0.194 Sum_probs=124.2
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
+.++++.++.+... ..+..+++|+.|++++|. + ..++ .+..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 21 l~~l~l~~~~i~~~--~~~~~l~~L~~L~l~~n~--i----~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 21 AVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSN--I----QSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCSEEECTTSC--C----CCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHhcCCCcccc--cchhhcCcCcEEECcCCC--c----ccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 45667888877654 368899999999999999 3 3444 57889999999999999987544 999999999
Q ss_pred EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
|++++|.++. ++.+.. ++|+.|++++|.+.+ ++ .+..+++|++|++++|.++ .++ .++.+++|++|++++|
T Consensus 90 L~L~~N~l~~----l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 90 LSVNRNRLKN----LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp EECCSSCCSC----CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG-GGGGCTTCCEEECTTS
T ss_pred EECCCCccCC----cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh-HHccCCCCCEEECCCC
Confidence 9999996543 344334 889999999999984 43 5889999999999999999 555 6889999999999999
Q ss_pred cccccCChhHHHhCCCCC
Q 038090 163 NILGKIPTSLLIRLPPSV 180 (186)
Q Consensus 163 ~~~~~~p~~~~~~l~~~~ 180 (186)
.++ .+ ..+. .++.+.
T Consensus 161 ~i~-~~-~~l~-~l~~L~ 175 (263)
T 1xeu_A 161 EIT-NT-GGLT-RLKKVN 175 (263)
T ss_dssp CCC-BC-TTST-TCCCCC
T ss_pred cCc-ch-HHhc-cCCCCC
Confidence 998 54 3333 555543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.1e-17 Score=137.12 Aligned_cols=152 Identities=25% Similarity=0.278 Sum_probs=127.4
Q ss_pred CCccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCC
Q 038090 1 HSQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSL 80 (186)
Q Consensus 1 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 80 (186)
.+|+.|++++|.+....+ +..|++|+.|+|++|. + ..++ .+..+++|+.|++++|.+.+. +.+..+++|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~--l----~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 133 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK--I----KDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQL 133 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC--C----CCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC--C----CCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCcc
Confidence 368899999999876533 8999999999999999 3 2333 578899999999999998863 468899999
Q ss_pred CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEecc
Q 038090 81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDIS 160 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~ 160 (186)
+.|++++|.+... +.+..+++|+.|++++|.+.+..| +..+++|++|+|++|.+. .++ .+..+++|+.|+++
T Consensus 134 ~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 134 ESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF 205 (605)
T ss_dssp SEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEECC
T ss_pred CEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEcc
Confidence 9999999965432 347899999999999999986555 889999999999999999 454 58899999999999
Q ss_pred CCcccccCChhH
Q 038090 161 SCNILGKIPTSL 172 (186)
Q Consensus 161 ~n~~~~~~p~~~ 172 (186)
+|++. ..|...
T Consensus 206 ~N~l~-~~p~~~ 216 (605)
T 1m9s_A 206 SQECL-NKPINH 216 (605)
T ss_dssp SEEEE-CCCCCC
T ss_pred CCcCc-CCcccc
Confidence 99998 555443
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=3.6e-19 Score=135.89 Aligned_cols=154 Identities=20% Similarity=0.202 Sum_probs=81.2
Q ss_pred CccceecccccccCc-ChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccc-cCCCC-cccccCCCC
Q 038090 2 SQRKINEQDFGVETS-NISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDV-DTSSA-VSPTLTNLS 78 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~ 78 (186)
+|+.|++++|.+... .+..+..+++|+.|++++|. + ....+..+..+++|++|++++| .+++. .+..+..++
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l---~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--L---SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--C---CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--c---CHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 345555555554432 23344555666666666665 3 3344555555666666666665 33321 333455556
Q ss_pred CCCeEeeccc-cccccccCCCC-CCCCC-cccEEEccCCc--CC-CCCCcccCCCCCCCEEEcCCCc-CCCCCchhhhcc
Q 038090 79 SLIYLSISEC-SSQDLFGYLPK-SQKGS-LLEDLRLSFTK--FL-GKIPPSLGNLTNLEDRYLSDNG-FSGELPTSLGKL 151 (186)
Q Consensus 79 ~L~~L~l~~~-~l~~~~~~~~~-~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~ 151 (186)
+|++|++++| .++. ..++. +..++ +|+.|++++|. +. ..++..+..+++|++|++++|. +++..+..+..+
T Consensus 169 ~L~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 169 RLDELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp TCCEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 6666666655 3321 01223 44555 66666666663 32 1234444556666666666666 444445556666
Q ss_pred CCCCEEeccCC
Q 038090 152 NSLKTFDISSC 162 (186)
Q Consensus 152 ~~L~~l~l~~n 162 (186)
++|++|++++|
T Consensus 247 ~~L~~L~l~~~ 257 (336)
T 2ast_B 247 NYLQHLSLSRC 257 (336)
T ss_dssp TTCCEEECTTC
T ss_pred CCCCEeeCCCC
Confidence 66666666666
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=5.7e-17 Score=129.12 Aligned_cols=145 Identities=23% Similarity=0.281 Sum_probs=68.5
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.|++++|.+... +.+..+++|+.|++++|. + .+ .++ +..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 223 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~--l---~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 223 LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ--I---SN-LAP-LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC--C---CC-CGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred CCEEECCCCCcccc--hhhhcCCCCCEEECCCCc--c---cc-chh-hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 34444444443321 234444555555555554 2 11 111 4445555555555555443222 445555555
Q ss_pred EeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 83 LSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
|++++|.+.. ++.+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+.+ + ..+..+++|++|++++|
T Consensus 292 L~L~~n~l~~----~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 292 LELNENQLED----ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNINWLSAGHN 363 (466)
T ss_dssp EECCSSCCSC----CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSS
T ss_pred EEcCCCcccC----chhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCCEEeCCCC
Confidence 5555553221 1114455555555555555553333 4455555555555555552 2 23555555666666655
Q ss_pred cccc
Q 038090 163 NILG 166 (186)
Q Consensus 163 ~~~~ 166 (186)
++++
T Consensus 364 ~l~~ 367 (466)
T 1o6v_A 364 QISD 367 (466)
T ss_dssp CCCB
T ss_pred ccCc
Confidence 5553
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4.8e-18 Score=138.40 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=130.9
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccc--------cccccchhHHHHc---------------------
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAF--------KLQKSGLSNLAKK--------------------- 52 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------~~~~~~~~~~~~~--------------------- 52 (186)
+|++|+++++.+. ..|+.+..|++|+.|++++|.... ....+..|..+..
T Consensus 350 ~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 5778888888876 447888899999999986663000 0001112221111
Q ss_pred -----------CCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCC
Q 038090 53 -----------LTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKI 120 (186)
Q Consensus 53 -----------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 120 (186)
...|+.|++++|.+++ +|. ++.+++|++|++++|.+ . .+|. ++.+++|+.|++++|.+.+ +
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l---~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL---R-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC---C-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc---c-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 1257789999999986 565 99999999999999954 3 6677 8999999999999999984 6
Q ss_pred CcccCCCCCCCEEEcCCCcCCCCC-chhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCC
Q 038090 121 PPSLGNLTNLEDRYLSDNGFSGEL-PTSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVAL 182 (186)
Q Consensus 121 ~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l 182 (186)
| .++.+++|++|++++|.+++.. |..++.+++|++|++++|+++ .+|. .+...+|.+..|
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEE
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC-CCccHHHHHHHHCcccCcc
Confidence 7 8999999999999999999654 889999999999999999998 4444 344568887665
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=4.7e-18 Score=131.38 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=82.6
Q ss_pred CccceecccccccCcCh----hhHHhhc-ccCeeeCCCCCccccccccchhHHHHcC-----CccceEEeccccCCCCcc
Q 038090 2 SQRKINEQDFGVETSNI----SRVARAL-QLGVLDLSYNHFAFKLQKSGLSNLAKKL-----TNLIEIYLIDVDTSSAVS 71 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~ 71 (186)
+|+.|++++|.+....+ ..+..++ +|++|++++|. + ....+..+..+ ++|++|++++|.+.+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l---~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS--L---GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC--G---GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC--C---CHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 36667777776665555 4555566 67777777776 3 33333334433 667777777776665444
Q ss_pred cc----cCCC-CCCCeEeeccccccccccC-CCC-CCC-CCcccEEEccCCcCCCCCCc----ccCCCC-CCCEEEcCCC
Q 038090 72 PT----LTNL-SSLIYLSISECSSQDLFGY-LPK-SQK-GSLLEDLRLSFTKFLGKIPP----SLGNLT-NLEDRYLSDN 138 (186)
Q Consensus 72 ~~----~~~l-~~L~~L~l~~~~l~~~~~~-~~~-~~~-~~~L~~L~l~~~~~~~~~~~----~~~~l~-~L~~L~L~~n 138 (186)
.. +..+ ++|++|++++|.++..... +.. +.. .++|+.|++++|.+.+..+. .+..++ +|++|++++|
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 32 2233 5666777766643211110 001 112 24566666666665533222 223333 5666666666
Q ss_pred cCCCCCchhhh----cc-CCCCEEeccCCccc
Q 038090 139 GFSGELPTSLG----KL-NSLKTFDISSCNIL 165 (186)
Q Consensus 139 ~~~~~~~~~~~----~~-~~L~~l~l~~n~~~ 165 (186)
.+.+..+..+. .+ ++|++|++++|.+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 66544333222 23 35666666666655
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=4.2e-17 Score=115.47 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=74.7
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhH--HHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSN--LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+.++++++++..+ +..+. .+++.|++++|. + ..+++ .+..+++|++|++++|.+++..|..|..+++|+
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~--i----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNE--L----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCC--C----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCc--C----CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 3456666665433 22222 266666666666 2 22222 256666666666666666665566666666666
Q ss_pred eEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC
Q 038090 82 YLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE 143 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 143 (186)
+|++++|.+ .+..+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 82 ~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 82 ELQLGENKI---KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCC---CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcC---CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 666666633 333333 55666666666666666655566666666666666666666654
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=9.8e-17 Score=127.78 Aligned_cols=151 Identities=20% Similarity=0.218 Sum_probs=125.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+.... .+..+++|+.|++++|. + . .++. +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 244 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~--l---~-~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 244 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQ--I---S-NISP-LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSC--C---C-CCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred CCCEEECCCCccccch--hhhcCCCCCEEECCCCc--c---C-cccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 6889999999987643 38899999999999999 3 3 3333 7889999999999999886543 88999999
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|++++|.+ .+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+++++++
T Consensus 313 ~L~L~~n~l---~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 313 YLTLYFNNI---SDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp EEECCSSCC---SCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred EEECcCCcC---CCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 999999954 33323 67889999999999999854 468899999999999999995544 88999999999999
Q ss_pred CcccccCChhH
Q 038090 162 CNILGKIPTSL 172 (186)
Q Consensus 162 n~~~~~~p~~~ 172 (186)
|.++ .+|..+
T Consensus 385 n~~~-~~p~~~ 394 (466)
T 1o6v_A 385 QAWT-NAPVNY 394 (466)
T ss_dssp EEEE-CCCBCC
T ss_pred Cccc-CCchhh
Confidence 9998 555543
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.7e-18 Score=133.68 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=132.5
Q ss_pred CCccceecccccccCcChhhHH----hh---------cccCeeeCCCCCccccccccchh---HHHHcCCccceEEeccc
Q 038090 1 HSQRKINEQDFGVETSNISRVA----RA---------LQLGVLDLSYNHFAFKLQKSGLS---NLAKKLTNLIEIYLIDV 64 (186)
Q Consensus 1 ~~L~~L~l~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~ 64 (186)
.+|+.|++++|.+....+..++ .+ ++|+.|++++|.+. ...++ ..+..+++|++|++++|
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE----NGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT----GGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC----cHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3689999999998754444444 34 89999999999932 13444 56778999999999999
Q ss_pred cCCC-----CcccccCCCCCCCeEeecccccccc-ccCCCC-CCCCCcccEEEccCCcCCCC----CCccc--CCCCCCC
Q 038090 65 DTSS-----AVSPTLTNLSSLIYLSISECSSQDL-FGYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSL--GNLTNLE 131 (186)
Q Consensus 65 ~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~--~~l~~L~ 131 (186)
.+.. ..+..+..+++|++|++++|.++.. ...++. +..+++|+.|++++|.+.+. ++..+ +.+++|+
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~ 277 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQ 277 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCC
T ss_pred CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeE
Confidence 8873 2344788999999999999954211 134555 78889999999999998754 45556 3489999
Q ss_pred EEEcCCCcCCC----CCchhh-hccCCCCEEeccCCcccccCC--hhHHHhCC
Q 038090 132 DRYLSDNGFSG----ELPTSL-GKLNSLKTFDISSCNILGKIP--TSLLIRLP 177 (186)
Q Consensus 132 ~L~L~~n~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~~p--~~~~~~l~ 177 (186)
+|++++|.+.+ .+|..+ ..+++|++|++++|.+++..+ ..+.+.++
T Consensus 278 ~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 330 (386)
T 2ca6_A 278 TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 330 (386)
T ss_dssp EEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHH
T ss_pred EEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhh
Confidence 99999999995 377776 668999999999999996654 55554444
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=1.5e-17 Score=128.08 Aligned_cols=172 Identities=22% Similarity=0.134 Sum_probs=124.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEE-eccccCCCCcccccCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIY-LIDVDTSSAVSPTLTNLSS 79 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~l~~ 79 (186)
++++|+++++.++.+...+|.++++|+.|+|++|. + .+.++ ..|.++++++++. +.+|++....++.|..+++
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--i---~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND--V---LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT--T---CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC--C---CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 57899999999987777789999999999999998 3 34343 3466777777644 4567777766778889999
Q ss_pred CCeEeecccccccccc---------------------CCCC--CCCC-CcccEEEccCCcCCCCCCcccCCCCCCCEEEc
Q 038090 80 LIYLSISECSSQDLFG---------------------YLPK--SQKG-SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYL 135 (186)
Q Consensus 80 L~~L~l~~~~l~~~~~---------------------~~~~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 135 (186)
|++|++++|.+..... .++. +..+ ..++.|++++|.+. .++.......+++.+++
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNL 184 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEEC
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhh
Confidence 9999998886652211 1111 2222 24667788888876 45555555677888888
Q ss_pred CC-CcCCCCCch-hhhccCCCCEEeccCCcccccCChhHHHhCCCCCC
Q 038090 136 SD-NGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVA 181 (186)
Q Consensus 136 ~~-n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~ 181 (186)
.+ |.+. .+|. .|..+++|++|++++|+++ .+|......+..+..
T Consensus 185 ~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 185 SDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRA 230 (350)
T ss_dssp TTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEEC
T ss_pred ccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhh
Confidence 75 5555 6765 5788999999999999998 898876666665543
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=1.8e-16 Score=129.00 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=19.0
Q ss_pred CEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090 131 EDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 131 ~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
+.|++++|.++ .+|..+..+++|++|++++|++++.+|..+
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred eEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 44444444444 344444444444444444444444444444
No 105
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.5e-18 Score=142.85 Aligned_cols=116 Identities=21% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCC
Q 038090 49 LAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNL 127 (186)
Q Consensus 49 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l 127 (186)
.+..+..|+.|++++|.+. .+|..+..+++|++|++++|.+ . .+|. +..+++|+.|++++|.+. .+|..++.+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l---~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSL---T-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCC---S-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcC---c-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444445555555555444 2333333444555555555422 2 3333 444445555555555544 444444445
Q ss_pred CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChh
Q 038090 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTS 171 (186)
Q Consensus 128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~ 171 (186)
++|++|+|++|.+. .+|..++.+++|++|++++|.+++.+|..
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 55555555555444 44444444555555555555554444433
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=1.5e-16 Score=107.89 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=84.9
Q ss_pred CCccceEEeccccCC-CCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCC
Q 038090 53 LTNLIEIYLIDVDTS-SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE 131 (186)
Q Consensus 53 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 131 (186)
.++++.|++++|.+. +..|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 356777777777766 45566667777777777777744322 2266777777777777777755666666677788
Q ss_pred EEEcCCCcCCCC-CchhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCCC
Q 038090 132 DRYLSDNGFSGE-LPTSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVALS 183 (186)
Q Consensus 132 ~L~L~~n~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l~ 183 (186)
+|++++|.+.+. .+..++.+++|++|++++|.++ .+|. .....+|.+..|+
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEET
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCccccc
Confidence 888888877731 2256777778888888888777 5554 4455677665543
No 107
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=3.9e-16 Score=124.22 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=96.3
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|+++++.+... +.+..+++|+.|++++|. + ..++ +..+++|++|++++|.+.+. + ++.+++|+
T Consensus 43 ~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~Ls~n~--l----~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 43 TLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN--I----TTLD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp TCCEEECCSSCCCCC--TTGGGCTTCSEEECCSSC--C----SCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred CCCEEEccCCCcccC--hhhcccCCCCEEEccCCc--C----CeEc--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 578888888887754 367888889999999888 3 2233 67788888888888887764 2 77888888
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccC
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISS 161 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~ 161 (186)
+|++++|.++. ++ +..+++|+.|++++|.+.+ ++ ++.+++|++|++++|...+.+ .++.+++|++|++++
T Consensus 110 ~L~L~~N~l~~----l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 110 YLNCDTNKLTK----LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EEECCSSCCSC----CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred EEECCCCcCCe----ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 88888885432 22 5677777888887777764 22 555666666666666443333 244555566666666
Q ss_pred Cccc
Q 038090 162 CNIL 165 (186)
Q Consensus 162 n~~~ 165 (186)
|.++
T Consensus 180 n~l~ 183 (457)
T 3bz5_A 180 NKIT 183 (457)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 5555
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=1.8e-17 Score=128.15 Aligned_cols=166 Identities=17% Similarity=0.101 Sum_probs=115.3
Q ss_pred CccceecccccccCcChhhHHhh-----cccCeeeCCCCCccccccccchhH----HHHcC-CccceEEeccccCCCCcc
Q 038090 2 SQRKINEQDFGVETSNISRVARA-----LQLGVLDLSYNHFAFKLQKSGLSN----LAKKL-TNLIEIYLIDVDTSSAVS 71 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~ 71 (186)
+|++|++++|.+....+..++.+ ++|++|++++|. + ....+. .+..+ ++|++|++++|.+.+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l---~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF--L---SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC--G---GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc--C---ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 68899999999888778888876 999999999999 4 333333 34445 899999999999886555
Q ss_pred cc----cCCC-CCCCeEeecccccccccc-CCCC-CCCCC-cccEEEccCCcCCCCCCccc----CCC-CCCCEEEcCCC
Q 038090 72 PT----LTNL-SSLIYLSISECSSQDLFG-YLPK-SQKGS-LLEDLRLSFTKFLGKIPPSL----GNL-TNLEDRYLSDN 138 (186)
Q Consensus 72 ~~----~~~l-~~L~~L~l~~~~l~~~~~-~~~~-~~~~~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~L~~n 138 (186)
.. +..+ .+|++|++++|.++.... .++. +...+ +|+.|++++|.+.+..+..+ ..+ ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 44 3343 589999999995542111 2222 33444 78899999888875555433 344 58888998888
Q ss_pred cCCCC----Cchhhhc-cCCCCEEeccCCcccccCChhH
Q 038090 139 GFSGE----LPTSLGK-LNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 139 ~~~~~----~~~~~~~-~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
.+.+. ++..+.. .++|++|++++|.+.+..+..+
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 88743 3444555 4588888888888874433333
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=4.7e-17 Score=110.48 Aligned_cols=129 Identities=22% Similarity=0.177 Sum_probs=107.2
Q ss_pred hhcccCeeeCCCCCccccccc-cchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-C
Q 038090 23 RALQLGVLDLSYNHFAFKLQK-SGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-S 100 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~ 100 (186)
..++++.|++++|. + . +.+|..+..+++|+.|++++|.+.+. ..++.+++|++|++++|. +.+.+|. +
T Consensus 15 ~~~~l~~L~l~~n~--l---~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~---i~~~~~~~~ 84 (149)
T 2je0_A 15 TPSDVKELVLDNSR--S---NEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR---VSGGLEVLA 84 (149)
T ss_dssp CGGGCSEEECTTCB--C---BTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC---CCSCTHHHH
T ss_pred CCccCeEEEccCCc--C---ChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc---ccchHHHHh
Confidence 35789999999999 4 3 46777778899999999999998865 788999999999999994 4444666 6
Q ss_pred CCCCcccEEEccCCcCCCC-CCcccCCCCCCCEEEcCCCcCCCCCc---hhhhccCCCCEEeccC
Q 038090 101 QKGSLLEDLRLSFTKFLGK-IPPSLGNLTNLEDRYLSDNGFSGELP---TSLGKLNSLKTFDISS 161 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~l~l~~ 161 (186)
..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6789999999999999742 33778899999999999999994433 3688999999999863
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=5.1e-16 Score=123.51 Aligned_cols=75 Identities=16% Similarity=0.147 Sum_probs=39.5
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|++|++++|.+... .+..+++|++|++++|. + .+ ++ +..+++|++|++++|.+++. + ++.+++|+
T Consensus 65 ~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~--l---~~-~~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~ 130 (457)
T 3bz5_A 65 GLTKLICTSNNITTL---DLSQNTNLTYLACDSNK--L---TN-LD--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLT 130 (457)
T ss_dssp TCSEEECCSSCCSCC---CCTTCTTCSEEECCSSC--C---SC-CC--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCC
T ss_pred CCCEEEccCCcCCeE---ccccCCCCCEEECcCCC--C---ce-ee--cCCCCcCCEEECCCCcCCee-c--CCCCCcCC
Confidence 456666666665543 14556666666666665 2 11 22 44555566666655555542 2 44555555
Q ss_pred eEeeccccc
Q 038090 82 YLSISECSS 90 (186)
Q Consensus 82 ~L~l~~~~l 90 (186)
+|++++|.+
T Consensus 131 ~L~l~~N~l 139 (457)
T 3bz5_A 131 YLNCARNTL 139 (457)
T ss_dssp EEECTTSCC
T ss_pred EEECCCCcc
Confidence 555555533
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=3.2e-16 Score=108.40 Aligned_cols=124 Identities=23% Similarity=0.333 Sum_probs=105.0
Q ss_pred CCccceEEeccccCC-CCcccccCCCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCC
Q 038090 53 LTNLIEIYLIDVDTS-SAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE 131 (186)
Q Consensus 53 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 131 (186)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+.+|..+..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 488999999999988 56787889999999999999965433 3378899999999999999876888777899999
Q ss_pred EEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCCh---hHHHhCCCCCCC
Q 038090 132 DRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIPT---SLLIRLPPSVAL 182 (186)
Q Consensus 132 ~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p~---~~~~~l~~~~~l 182 (186)
+|++++|.++ .++ ..+..+++|++|++++|.++ .+|. .....+|.+..|
T Consensus 99 ~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 99 HLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp EEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEE
T ss_pred EEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEe
Confidence 9999999999 544 67889999999999999998 7776 455578876544
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=7.1e-17 Score=134.97 Aligned_cols=144 Identities=19% Similarity=0.118 Sum_probs=118.9
Q ss_pred hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090 18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL 97 (186)
Q Consensus 18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 97 (186)
+..+..+..|+.|+|++|. + ..++..+..+++|+.|++++|.++ .+|..|+.+++|++|++++|.+ . .+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~--l----~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l---~-~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ--I----FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL---T-SL 285 (727)
T ss_dssp -----CCCCCCEEECTTSC--C----SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC---S-SC
T ss_pred hhhhccCCCCcEEECCCCC--C----CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC---C-cc
Confidence 5567889999999999999 3 466666778999999999999998 6788899999999999999954 3 66
Q ss_pred CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC-CCCEEeccCCcccccCChhHH
Q 038090 98 PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN-SLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 98 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~p~~~~ 173 (186)
|. +..+++|+.|++++|.+. .+|..|+.+++|++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|.++.
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 77 899999999999999997 7898899999999999999999987777765442 233578999999999998664
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=3.9e-16 Score=127.04 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=122.2
Q ss_pred CccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCC
Q 038090 2 SQRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLI 81 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 81 (186)
+|+.|++++|.+... + ..+++|+.|++++|. + ..+|. +.+ +|+.|++++|.+++ +|. .+++|+
T Consensus 81 ~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~--l----~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~ 143 (571)
T 3cvr_A 81 QITVLEITQNALISL-P---ELPASLEYLDACDNR--L----STLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLE 143 (571)
T ss_dssp TCSEEECCSSCCSCC-C---CCCTTCCEEECCSSC--C----SCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred CCCEEECcCCCCccc-c---cccCCCCEEEccCCC--C----CCcch-hhc--CCCEEECCCCcCCC-CCC---cCcccc
Confidence 589999999998854 3 468999999999999 3 33555 443 99999999999987 555 689999
Q ss_pred eEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCC-------
Q 038090 82 YLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSL------- 154 (186)
Q Consensus 82 ~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L------- 154 (186)
+|++++|.++. +|. .+++|+.|++++|.+.+ +|. +. ++|++|++++|.++ .+|. +.. +|
T Consensus 144 ~L~Ls~N~l~~----lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 144 YINADNNQLTM----LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp EEECCSSCCSC----CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred EEeCCCCccCc----CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence 99999995532 454 56789999999999985 777 65 99999999999999 7777 554 67
Q ss_pred CEEeccCCcccccCChhHHHhCCCC--CCCCCCC
Q 038090 155 KTFDISSCNILGKIPTSLLIRLPPS--VALSSTP 186 (186)
Q Consensus 155 ~~l~l~~n~~~~~~p~~~~~~l~~~--~~l~~~~ 186 (186)
++|++++|.++ .+|..++. ++.+ +.+++||
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILS-LDPTCTIILEDNP 241 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSS
T ss_pred eEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCc
Confidence 99999999998 99999985 7765 5666665
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=3.3e-16 Score=110.83 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=111.6
Q ss_pred CeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccc-ccCCCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090 28 GVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSP-TLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSL 105 (186)
Q Consensus 28 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~ 105 (186)
+.++++++. ...+|..+ ..+++.|++++|.+.+..+. .|..+++|++|++++| .+.+..|. +..+++
T Consensus 11 ~~l~~s~~~------l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N---~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRG------LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN---QLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSC------CSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS---CCCCBCTTTTTTCTT
T ss_pred CEEEcCCCC------cCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC---CCCCcCHhHcCCccc
Confidence 789999999 34555433 24899999999999876554 4899999999999999 44555566 889999
Q ss_pred ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCC
Q 038090 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIP 169 (186)
Q Consensus 106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p 169 (186)
|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+++++++|++.+..+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999999999997777789999999999999999997778889999999999999999986555
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=1e-15 Score=106.71 Aligned_cols=130 Identities=16% Similarity=0.072 Sum_probs=78.7
Q ss_pred cCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090 27 LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSL 105 (186)
Q Consensus 27 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~ 105 (186)
.+.++++++. ...+|.. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+ ....+. +..+++
T Consensus 9 ~~~l~~~~~~------l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKG------LTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDKLTK 77 (177)
T ss_dssp TTEEECCSSC------CSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCTT
T ss_pred CCEEEecCCC------CccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc---eEeChhHccCCCc
Confidence 3556666666 2233322 135667777777766655555566677777777777633 222223 566667
Q ss_pred ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEeccCCcccccC
Q 038090 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKI 168 (186)
Q Consensus 106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~ 168 (186)
|+.|++++|.+....+..+..+++|++|++++|.++ .++. .+..+++|+++++++|++.+..
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 777777777776444455666777777777777776 3433 3466677777777777776443
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=1.7e-18 Score=123.14 Aligned_cols=159 Identities=16% Similarity=0.234 Sum_probs=111.6
Q ss_pred hhHHhhcccCeeeCCCCCccccc-cccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090 19 SRVARALQLGVLDLSYNHFAFKL-QKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL 97 (186)
Q Consensus 19 ~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 97 (186)
..+.....++.++++.+.+.... ....+|..+..+++|++|++++|.+.+ .| .+..+++|++|++++|.+. .+
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----~l 85 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----KI 85 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC----SC
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc----cc
Confidence 34566777777777777731100 012233478888888888888888776 45 7778888888888888443 45
Q ss_pred CC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc--hhhhccCCCCEEeccCCcccccCCh----
Q 038090 98 PK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP--TSLGKLNSLKTFDISSCNILGKIPT---- 170 (186)
Q Consensus 98 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~l~l~~n~~~~~~p~---- 170 (186)
|. +..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .++ ..+..+++|+++++++|.+.+..|.
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccch
Confidence 65 5666788888888888873 44 5677788888888888888 443 3577888888888888888755443
Q ss_pred -----hHHHhCCCCCCCCCCC
Q 038090 171 -----SLLIRLPPSVALSSTP 186 (186)
Q Consensus 171 -----~~~~~l~~~~~l~~~~ 186 (186)
.+...+|.+..|+++|
T Consensus 163 ~~~~~~~~~~l~~L~~Ld~~~ 183 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLDGMP 183 (198)
T ss_dssp HHHHHHHHHHCSSCSEECCGG
T ss_pred HHHHHHHHHhCCCcEEECCcc
Confidence 3455778888877764
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=107.22 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=69.0
Q ss_pred ceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEe
Q 038090 5 KINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLS 84 (186)
Q Consensus 5 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 84 (186)
.++++++++... +..+ .++++.|++++|. + ..+|..+..+++|+.|++++|.+++..+..|..+++|++|+
T Consensus 14 ~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~--i----~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ 84 (193)
T 2wfh_A 14 VVRCSNKGLKVL-PKGI--PRDVTELYLDGNQ--F----TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLI 84 (193)
T ss_dssp EEECTTSCCSSC-CSCC--CTTCCEEECCSSC--C----CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEcCCCCCCcC-CCCC--CCCCCEEECCCCc--C----chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEE
Confidence 455555555433 2222 2456666666666 2 24445556666666666666666655555566666666666
Q ss_pred eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCC
Q 038090 85 ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 85 l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~ 141 (186)
+++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 85 Ls~N~l---~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 85 LSYNRL---RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCSSCC---CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCcc---CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666633 222233 555666666666666665333334555666666666666554
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=2.5e-15 Score=123.47 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=29.5
Q ss_pred CcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHH
Q 038090 104 SLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 104 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
++|+.|++++|.+.+ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+.
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~ 281 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLI 281 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGG
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHh
Confidence 345555555555542 33 22344555555555544 3333 3345555555555555 5555443
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=2.8e-16 Score=109.60 Aligned_cols=132 Identities=15% Similarity=0.114 Sum_probs=107.1
Q ss_pred hHHhhcccCeeeCCCCCccccccccchhHHHHcC-CccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090 20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-TNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP 98 (186)
Q Consensus 20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 98 (186)
.+..+.+|+.|++++|. + ..++. +..+ ++|+.|++++|.+.+. +.+..+++|++|++++|.+. ...+
T Consensus 14 ~~~~~~~L~~L~l~~n~--l----~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~---~~~~ 81 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK--I----PVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC---RIGE 81 (176)
T ss_dssp EEECTTSCEEEECTTSC--C----CSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC---EECS
T ss_pred hcCCcCCceEEEeeCCC--C----chhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc---ccCc
Confidence 34578899999999999 3 23443 4444 4999999999998864 68889999999999999543 2223
Q ss_pred C-CCCCCcccEEEccCCcCCCCCCc--ccCCCCCCCEEEcCCCcCCCCCchh----hhccCCCCEEeccCCccc
Q 038090 99 K-SQKGSLLEDLRLSFTKFLGKIPP--SLGNLTNLEDRYLSDNGFSGELPTS----LGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 99 ~-~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~~~L~~l~l~~n~~~ 165 (186)
. +..+++|+.|++++|.+. .+|. .+..+++|++|++++|.+. .+|.. +..+++|++++++.|...
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred chhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 578899999999999996 5665 7888999999999999998 66664 889999999999999876
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.8e-15 Score=106.16 Aligned_cols=126 Identities=19% Similarity=0.174 Sum_probs=105.6
Q ss_pred CeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcc
Q 038090 28 GVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLL 106 (186)
Q Consensus 28 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L 106 (186)
+.++++++. ...+|..+ .++++.|++++|.++ .+|..|..+++|++|++++|.+ ....+. +..+++|
T Consensus 13 ~~l~~~~~~------l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i---~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKG------LKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI---STLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTTSC------CSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC---CCCCTTTTTTCTTC
T ss_pred CEEEcCCCC------CCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC---CEeCHhHccCCCCC
Confidence 678999998 34455433 368999999999998 4678999999999999999954 343445 8899999
Q ss_pred cEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 107 EDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 107 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+++++++|++.
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999999999777788999999999999999999433445889999999999999985
No 121
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=4.3e-15 Score=103.55 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=105.3
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
.+.++++++++.... .. -.++|+.|++++|. + ....+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~--l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNK--L---QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSC--C---CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCc--c---cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 356788888876543 22 23799999999999 4 3334445788999999999999999776777899999999
Q ss_pred EeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCc
Q 038090 83 LSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELP 145 (186)
Q Consensus 83 L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 145 (186)
|++++|.+ ....+. +..+++|+.|++++|.+....+..+..+++|+++++++|.+.+..+
T Consensus 81 L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHENKL---QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCC---CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCc---cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999954 333344 6889999999999999985555557889999999999999996544
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=1.6e-17 Score=131.77 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=50.4
Q ss_pred CccceecccccccCcC----hhhHHhhcccCeeeCCCCCccccccccc----hhHHH-HcCCccceEEeccccCCCC---
Q 038090 2 SQRKINEQDFGVETSN----ISRVARALQLGVLDLSYNHFAFKLQKSG----LSNLA-KKLTNLIEIYLIDVDTSSA--- 69 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~-~~l~~L~~L~l~~~~~~~~--- 69 (186)
+|+.|++++|.+.... +..+..+++|+.|++++|. + ... +.+.+ ..+++|++|++++|.++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l---~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~ 274 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK--L---GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--C---HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--C---ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH
Confidence 5777888888776542 4455667788888888877 3 221 11211 2356677777777766542
Q ss_pred -cccccCCCCCCCeEeeccccc
Q 038090 70 -VSPTLTNLSSLIYLSISECSS 90 (186)
Q Consensus 70 -~~~~~~~l~~L~~L~l~~~~l 90 (186)
++..+..+++|++|++++|.+
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHhhCCCcceEECCCCCC
Confidence 344455566666666666643
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=3.6e-17 Score=129.68 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=39.7
Q ss_pred CccceecccccccCcChhhHHh-----hcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCc-----c
Q 038090 2 SQRKINEQDFGVETSNISRVAR-----ALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV-----S 71 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~ 71 (186)
+|+.|++++|.+.......++. +++|+.|++++|.+.- .....++..+..+++|++|++++|.+.... +
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS-DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT-THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH-HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 4555555555554333333332 3356666666655210 000013444555555666666555544321 1
Q ss_pred cccCCCCCCCeEeecccc
Q 038090 72 PTLTNLSSLIYLSISECS 89 (186)
Q Consensus 72 ~~~~~l~~L~~L~l~~~~ 89 (186)
..+..+++|++|++++|.
T Consensus 250 ~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHTSTTCCCCEEECTTSC
T ss_pred HHhcCCCCceEEECcCCC
Confidence 122235556666665553
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=1.7e-14 Score=114.59 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=24.1
Q ss_pred cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|.. +++|++|++++|.+.
T Consensus 216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCS
T ss_pred cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCccc
Confidence 3444444444443 333 2444445555555555444 23321 234444444444444
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=2.1e-17 Score=117.48 Aligned_cols=150 Identities=20% Similarity=0.097 Sum_probs=118.4
Q ss_pred CccceecccccccCcChh------hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccC
Q 038090 2 SQRKINEQDFGVETSNIS------RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLT 75 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 75 (186)
.++.++++.+.+....+. .+..+++|++|++++|. + ..+| .+..+++|+.|++++|.+. .+|..+.
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~--l----~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN--I----EKIS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE--E----SCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC--C----cccc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 345566666666544444 89999999999999999 3 3366 7889999999999999988 4677777
Q ss_pred CCCCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCC-cccCCCCCCCEEEcCCCcCCCCCch--------
Q 038090 76 NLSSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIP-PSLGNLTNLEDRYLSDNGFSGELPT-------- 146 (186)
Q Consensus 76 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~-------- 146 (186)
.+++|++|++++|.+.. +|.+..+++|+.|++++|.+.+..+ ..+..+++|+++++++|.+.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~----l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS----LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHCSEEEEEEEECCC----HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred cCCcCCEEECcCCcCCc----CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 88999999999996543 3346778899999999999974222 4688999999999999999754433
Q ss_pred --hhhccCCCCEEeccCCccc
Q 038090 147 --SLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 147 --~~~~~~~L~~l~l~~n~~~ 165 (186)
.+..+++|++++ +|.++
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHhCCCcEEEC--CcccC
Confidence 278899999998 67765
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=1.3e-14 Score=101.11 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=101.8
Q ss_pred HHcCCccceEEeccccCCCCcccccCCCC-CCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090 50 AKKLTNLIEIYLIDVDTSSAVSPTLTNLS-SLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLT 128 (186)
Q Consensus 50 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 128 (186)
+..+.+|+.|++++|.+.. .+. +..+. +|++|++++|.++.. +.+..+++|+.|++++|.+....+..+..++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3457899999999999885 454 55554 999999999966543 3478899999999999999844334458899
Q ss_pred CCCEEEcCCCcCCCCCch--hhhccCCCCEEeccCCcccccCChh---HHHhCCCCCCCC
Q 038090 129 NLEDRYLSDNGFSGELPT--SLGKLNSLKTFDISSCNILGKIPTS---LLIRLPPSVALS 183 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~p~~---~~~~l~~~~~l~ 183 (186)
+|++|++++|.+. .+|. .+..+++|+++++++|.++ .+|.. +...+|.+..|+
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence 9999999999997 6776 7889999999999999998 88876 455788776553
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.58 E-value=1.8e-14 Score=114.52 Aligned_cols=120 Identities=20% Similarity=0.183 Sum_probs=53.9
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGS 104 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 104 (186)
++|++|++++|. + ..+| .+.++++|++|++++|.+.+ .|..+ .+|++|++++|.++. +|.++.++
T Consensus 131 ~~L~~L~L~~n~--l----~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~----l~~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQ--L----EKLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE----LPELQNLP 195 (454)
T ss_dssp TTCCEEECCSSC--C----SSCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS----CCCCTTCT
T ss_pred CCCCEEECcCCC--C----CCCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc----CccccCCC
Confidence 355555555555 2 1233 24455555555555555443 22221 245555555553221 23344445
Q ss_pred cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
+|+.|++++|.+.+ +|... ++|++|++++|.+. .+|. ++.+++|+++++++|.++
T Consensus 196 ~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp TCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 55555555554442 22211 34555555555444 4442 444555555555555544
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=3.9e-14 Score=116.42 Aligned_cols=85 Identities=25% Similarity=0.231 Sum_probs=70.5
Q ss_pred CCCCeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEE
Q 038090 78 SSLIYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTF 157 (186)
Q Consensus 78 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l 157 (186)
++|++|++++|.++. +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++ .+|..+..+++|+.|
T Consensus 221 ~~L~~L~Ls~N~L~~----lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 221 SGLKELIVSGNRLTS----LP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp TTCCEEECCSSCCSC----CC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCCEEEccCCccCc----CC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 567778888774432 33 34578999999999998 5665 5689999999999999 889999999999999
Q ss_pred eccCCcccccCChhHH
Q 038090 158 DISSCNILGKIPTSLL 173 (186)
Q Consensus 158 ~l~~n~~~~~~p~~~~ 173 (186)
++++|++++..|..+.
T Consensus 290 ~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 290 NLEGNPLSERTLQALR 305 (622)
T ss_dssp ECCSCCCCHHHHHHHH
T ss_pred EecCCCCCCcCHHHHH
Confidence 9999999987777665
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=2.1e-16 Score=122.64 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=124.5
Q ss_pred CccceecccccccCcChhhHHhh-----cccCeeeCCCCCccccccccc-hhHHHHcCCccceEEeccccCCCCccccc-
Q 038090 2 SQRKINEQDFGVETSNISRVARA-----LQLGVLDLSYNHFAFKLQKSG-LSNLAKKLTNLIEIYLIDVDTSSAVSPTL- 74 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~- 74 (186)
.|+.|++++|.+.......++.+ ++|+.|++++|. + ... .......+.+|+.|++++|.+.......+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~--l---~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ--L---DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC--C---CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC--C---CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 57899999999887667777665 799999999999 3 332 33334456789999999998875433333
Q ss_pred ----CCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCC-
Q 038090 75 ----TNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGE- 143 (186)
Q Consensus 75 ----~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~- 143 (186)
...++|++|++++|.++... ..++. +...++|+.|++++|.+.+. ++..+...++|++|++++|.+.+.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 34678999999999654211 12333 46788899999999998743 245566778999999999999853
Q ss_pred ---CchhhhccCCCCEEeccCCcccccCChhHHH
Q 038090 144 ---LPTSLGKLNSLKTFDISSCNILGKIPTSLLI 174 (186)
Q Consensus 144 ---~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~ 174 (186)
++..+..+++|++|++++|.+.+.....+.+
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 3344567799999999999998655555543
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=3.7e-15 Score=121.41 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=103.8
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCCCCCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPKSQKGS 104 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 104 (186)
..|+.|++++|. + ..+|. +..+++|+.|++++|.+. .+|..++.+++|++|++++|.++. +|.++.++
T Consensus 441 ~~L~~L~Ls~n~--l----~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~----lp~l~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHKD--L----TVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN----VDGVANLP 508 (567)
T ss_dssp TTCSEEECTTSC--C----SSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC----CGGGTTCS
T ss_pred cCceEEEecCCC--C----CCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC----CcccCCCC
Confidence 468999999999 3 34665 889999999999999998 678899999999999999996543 45688999
Q ss_pred cccEEEccCCcCCCCC-CcccCCCCCCCEEEcCCCcCCCCCch---hhhccCCCCEEec
Q 038090 105 LLEDLRLSFTKFLGKI-PPSLGNLTNLEDRYLSDNGFSGELPT---SLGKLNSLKTFDI 159 (186)
Q Consensus 105 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~l~l 159 (186)
+|+.|++++|.+.+.. |..++.+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 509 ~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999998665 99999999999999999999954332 2345889999864
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=9.3e-13 Score=91.26 Aligned_cols=107 Identities=17% Similarity=0.134 Sum_probs=76.3
Q ss_pred ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCC
Q 038090 26 QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGS 104 (186)
Q Consensus 26 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~ 104 (186)
..+.++++++. + ..+|..+ ..+|+.|++++|.+++..+..|..+++|++|++++|.+ ....+. +..++
T Consensus 10 ~~~~l~~s~n~--l----~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l---~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKS--L----ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL---TVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSC--C----SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---CCCCTTTTTTCT
T ss_pred CCCEEEeCCCC--c----CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc---CccChhhccCCC
Confidence 35778888887 2 3444333 37788888888888877677788888888888888843 332333 56777
Q ss_pred cccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCC
Q 038090 105 LLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGE 143 (186)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~ 143 (186)
+|+.|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888888888887755555677788888888888877744
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=6.8e-14 Score=114.07 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=35.5
Q ss_pred ccceeccccc-ccCcChhh-HHhhcccCeeeCCCCCccccccccc----hhHHHHcCCccceEEeccccCCCC----ccc
Q 038090 3 QRKINEQDFG-VETSNISR-VARALQLGVLDLSYNHFAFKLQKSG----LSNLAKKLTNLIEIYLIDVDTSSA----VSP 72 (186)
Q Consensus 3 L~~L~l~~~~-~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~ 72 (186)
|+.|++.+|. +....... +..|++|++|++++|. + .+. ++.....+++|++|++++|.+.+. .+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~---~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~ 214 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--F---SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE--E---ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc--c---cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence 5555555553 22111111 2255556666666555 2 111 333344455555555555544311 122
Q ss_pred ccCCCCCCCeEeeccc
Q 038090 73 TLTNLSSLIYLSISEC 88 (186)
Q Consensus 73 ~~~~l~~L~~L~l~~~ 88 (186)
.+..+++|++|++++|
T Consensus 215 ~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDF 230 (592)
T ss_dssp HHHHCTTCCEEECSSC
T ss_pred HHhhCCCCcEEeccCc
Confidence 2334455555555554
No 133
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.48 E-value=1.7e-14 Score=117.63 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=107.7
Q ss_pred CccceecccccccCcChhhHHh-hc-ccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCC----cccccC
Q 038090 2 SQRKINEQDFGVETSNISRVAR-AL-QLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSA----VSPTLT 75 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~ 75 (186)
+|+.|++++|.+.......++. ++ +|+.|++++|. . .....++.....+++|++|++++|.+.+. ++..+.
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~--~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS--G-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE--E-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC--C-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4677788877766555566665 33 48888888876 1 11334455556788899999988877654 233455
Q ss_pred CCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCCCCccc---------------------------CC
Q 038090 76 NLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGKIPPSL---------------------------GN 126 (186)
Q Consensus 76 ~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------~~ 126 (186)
.+++|++|++++|.+.... ..++. +..+++|+.|++++|.+.+ ++..+ ..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6788999999888543111 23333 4567788888888776542 23223 33
Q ss_pred CCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCC
Q 038090 127 LTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVAL 182 (186)
Q Consensus 127 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l 182 (186)
+++|+.+++..+... .++..+..+++|++|++++|.+++.....+...++.+..|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L 323 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVL 323 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence 344444444443222 4555566777888888888877655444444556655443
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.1e-12 Score=91.27 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=77.8
Q ss_pred cCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCc
Q 038090 27 LGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSL 105 (186)
Q Consensus 27 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~ 105 (186)
-+.++++++. ...+|..+ ..+|+.|++++|.+.+..|..|..+++|++|++++|.++ .-.+. +..+++
T Consensus 14 ~~~l~~~~n~------l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIR------LASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT---AIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSC------CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTT
T ss_pred CcEEEeCCCC------CCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---ccChhHhCCcch
Confidence 3678888888 34455433 278888888888888777778888888888888888543 22223 577888
Q ss_pred ccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090 106 LEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142 (186)
Q Consensus 106 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 142 (186)
|+.|++++|.+....+..+..+++|++|++++|.+..
T Consensus 83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred hhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8888888888875444457788888888888888874
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=1.3e-13 Score=105.15 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=69.0
Q ss_pred CCCCCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCC-EEEcCCCcCCCCCchhhhccCC
Q 038090 77 LSSLIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLE-DRYLSDNGFSGELPTSLGKLNS 153 (186)
Q Consensus 77 l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~~~~~~~ 153 (186)
+++|+.+++++|.+. .++. +..+++|+.+++..+ +....+..|..+.+|+ .+++.+ .++.-.+.+|..|++
T Consensus 225 ~~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 456777777776432 2333 677788888888776 5545556777888888 888887 555233466888888
Q ss_pred CCEEeccCCcccccCChhHHHhCCCCCCC
Q 038090 154 LKTFDISSCNILGKIPTSLLIRLPPSVAL 182 (186)
Q Consensus 154 L~~l~l~~n~~~~~~p~~~~~~l~~~~~l 182 (186)
|+.+++.+|.++ .++...+..++.+..+
T Consensus 299 L~~l~l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 299 LRYVLATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred CCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence 888888888887 8887776677766543
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=4.9e-13 Score=92.66 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=76.3
Q ss_pred ccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090 55 NLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133 (186)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 133 (186)
..+.++++++.+.. +|..+. +++++|++++|. +.+..+. +..+++|+.|++++|.+....+..|..+++|++|
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQ---ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCc---CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 35677888887774 454442 678888888884 3444455 7778888888888888875555566788888888
Q ss_pred EcCCCcCCCCCchhhhccCCCCEEeccCCccc
Q 038090 134 YLSDNGFSGELPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
++++|.+++..+..+..+++|++|++++|++.
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88888888433345778888888888888776
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=9.3e-13 Score=91.63 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=77.0
Q ss_pred cceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEE
Q 038090 56 LIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRY 134 (186)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 134 (186)
-+.++++++.+.. +|..+. ++|++|++++|. +.+..|. +..+++|+.|++++|.+....+..|..+++|++|+
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQ---ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCC---ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 3677888887763 555443 778888888884 3444455 77888888888888888754445567888888888
Q ss_pred cCCCcCCCCCch-hhhccCCCCEEeccCCcccccCCh
Q 038090 135 LSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPT 170 (186)
Q Consensus 135 L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~ 170 (186)
+++|.+. .++. .+..+++|++|++++|++. ..+.
T Consensus 88 L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 88 LNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred CCCCccc-eeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 8888888 4444 4778888888888888876 4443
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=4e-13 Score=103.24 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=108.6
Q ss_pred cceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchh-HHHHcCCccceEEeccccCCCCcc-cccCCCCCCC
Q 038090 4 RKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLS-NLAKKLTNLIEIYLIDVDTSSAVS-PTLTNLSSLI 81 (186)
Q Consensus 4 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~ 81 (186)
+.++.++++++.+ |..+ .+++++|++++|. + ..++ ..|.++++|++|++++|.+.+.++ ..|.++++++
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~--i----~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTK--L----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCC--C----SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCc--C----CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 3456666666644 3433 3689999999999 3 4454 458999999999999999876554 5688999887
Q ss_pred eEe-eccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCC-------------------------C-CCCCEE
Q 038090 82 YLS-ISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGN-------------------------L-TNLEDR 133 (186)
Q Consensus 82 ~L~-l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------l-~~L~~L 133 (186)
++. ...|.+ ..-.+. +..+++|+.|++++|.+....+..+.. + ..++.|
T Consensus 83 ~~l~~~~N~l---~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 83 EIRIEKANNL---LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp EEEEEEETTC---CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhcccCCcc---cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 654 555643 333345 788999999999998876332222211 2 245667
Q ss_pred EcCCCcCCCCCchhhhccCCCCEEeccC-CcccccCChhHHHhCCCC
Q 038090 134 YLSDNGFSGELPTSLGKLNSLKTFDISS-CNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 134 ~L~~n~~~~~~~~~~~~~~~L~~l~l~~-n~~~~~~p~~~~~~l~~~ 179 (186)
++++|+++ .++.......+|+++++.+ |.+. .+|...+..++.+
T Consensus 160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L 204 (350)
T 4ay9_X 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGP 204 (350)
T ss_dssp ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECC
T ss_pred cccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCccc
Confidence 77777777 5555554556677777764 4554 7777665555544
No 139
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=1.3e-13 Score=112.36 Aligned_cols=109 Identities=24% Similarity=0.229 Sum_probs=61.1
Q ss_pred CccceecccccccCcChhhHH-hhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCccccc----CC
Q 038090 2 SQRKINEQDFGVETSNISRVA-RALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTL----TN 76 (186)
Q Consensus 2 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~ 76 (186)
+|++|++++|.+.......+. .+++|+.|++++|.. + ....++.....+++|++|++++|.+.+..+..+ ..
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-F--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE-E--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC-C--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 466777777766554455554 577777777777731 1 022244455567777777777776554333222 35
Q ss_pred CCCCCeEeecccccccccc-CCCC-CCCCCcccEEEccCC
Q 038090 77 LSSLIYLSISECSSQDLFG-YLPK-SQKGSLLEDLRLSFT 114 (186)
Q Consensus 77 l~~L~~L~l~~~~l~~~~~-~~~~-~~~~~~L~~L~l~~~ 114 (186)
+++|++|++++|. ..+.. .+.. ...+++|+.|++++|
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5677777777763 00111 1111 234566666666655
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=1.2e-11 Score=94.13 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=84.6
Q ss_pred CCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC--CCCCCccc-EEEccCCcCCCCCCcccCCCCC
Q 038090 53 LTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK--SQKGSLLE-DLRLSFTKFLGKIPPSLGNLTN 129 (186)
Q Consensus 53 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~ 129 (186)
+.+|+.+++.+|.+....+..|..+.+|+.+++..| + ..++. +..+++|+ .+++.. .+....+..|..|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i----~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L----KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C----CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c----ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence 789999999999888766778999999999999987 3 23343 88999999 999988 665456788999999
Q ss_pred CCEEEcCCCcCCCCCchhhhccCCCCEEec
Q 038090 130 LEDRYLSDNGFSGELPTSLGKLNSLKTFDI 159 (186)
Q Consensus 130 L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l 159 (186)
|+.+++.+|.+..-.+..|..+++|+.++.
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999999998444457899999999874
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.24 E-value=2.1e-13 Score=111.16 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=39.9
Q ss_pred CCcccEEEccCCcCCCCCCccc-CCCCCCCEEEcCCCcCCCCCch-hhhccCCCCEEeccCCcccccCChhHHHhCCCC
Q 038090 103 GSLLEDLRLSFTKFLGKIPPSL-GNLTNLEDRYLSDNGFSGELPT-SLGKLNSLKTFDISSCNILGKIPTSLLIRLPPS 179 (186)
Q Consensus 103 ~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~ 179 (186)
+++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++....+.+...+|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 4555666666555543322222 3456666666666666422222 233456666666666666544444454455543
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=4.9e-11 Score=91.27 Aligned_cols=91 Identities=24% Similarity=0.235 Sum_probs=40.7
Q ss_pred hhHHHHcCCccceEEecc-ccCCCCcccccCCCCCCCeEeeccccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcc
Q 038090 46 LSNLAKKLTNLIEIYLID-VDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPS 123 (186)
Q Consensus 46 ~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~ 123 (186)
+|. +..+.+|+.|++++ |.+.+..+..|..+++|++|++++| .+.+..|. +..+++|+.|++++|.+....+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N---~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS---GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS---CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC---ccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 444 44444455555543 4444433344555555555555555 22222233 444455555555555544222222
Q ss_pred cCCCCCCCEEEcCCCcCC
Q 038090 124 LGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 124 ~~~l~~L~~L~L~~n~~~ 141 (186)
+..+. |+.|++.+|.+.
T Consensus 100 ~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TCSCC-CCEEECCSSCCC
T ss_pred cccCC-ceEEEeeCCCcc
Confidence 22222 555555555544
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=5.3e-13 Score=103.49 Aligned_cols=159 Identities=17% Similarity=0.110 Sum_probs=108.8
Q ss_pred hhcccCeeeCCCCCccccccccchhHHHHcC-----CccceEEeccccCCCCccccc-CCCCCCCeEeecccccccccc-
Q 038090 23 RALQLGVLDLSYNHFAFKLQKSGLSNLAKKL-----TNLIEIYLIDVDTSSAVSPTL-TNLSSLIYLSISECSSQDLFG- 95 (186)
Q Consensus 23 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~- 95 (186)
-+++|+.|++++|. + .......+..+ .+|++|++++|.+.......+ ..+.+|++|++++|.++....
T Consensus 70 ~~~~L~~L~Ls~n~--l---~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 70 VLSSLRQLNLAGVR--M---TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHTTCCEEECTTSC--C---CHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred HHhhCCEEEecCCC--C---CHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence 35789999999999 4 33323333332 699999999998875333333 346789999999996542111
Q ss_pred CCCC-C-CCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEeccCCccc
Q 038090 96 YLPK-S-QKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 96 ~~~~-~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
.+.. + ...++|+.|++++|.+.+. ++..+..+++|++|+|++|.+.+. ++..+..+++|++|++++|.++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1111 2 3467899999999998643 344456789999999999998743 3455677889999999999998
Q ss_pred ccCChhHHH---hCCCC--CCCCCCC
Q 038090 166 GKIPTSLLI---RLPPS--VALSSTP 186 (186)
Q Consensus 166 ~~~p~~~~~---~l~~~--~~l~~~~ 186 (186)
+.....+.. ..+.+ .+|++|+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 544444433 33544 4555553
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=7.1e-11 Score=90.39 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=83.6
Q ss_pred ceEEeccc-cCCCCcccccCCCCCCCeEeecc-ccccccccCCCC-CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEE
Q 038090 57 IEIYLIDV-DTSSAVSPTLTNLSSLIYLSISE-CSSQDLFGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDR 133 (186)
Q Consensus 57 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 133 (186)
..++.+++ .++. +|. +..+.+|++|++++ |.+ ..-.+. +..+++|+.|++++|.+.+..|..|..+++|++|
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHL---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSC---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCC---CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 35677777 7775 677 99999999999996 844 333334 8899999999999999998788889999999999
Q ss_pred EcCCCcCCCCCchh-hhccCCCCEEeccCCccc
Q 038090 134 YLSDNGFSGELPTS-LGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 134 ~L~~n~~~~~~~~~-~~~~~~L~~l~l~~n~~~ 165 (186)
+|++|.+. .+|.. +..++ |++|++.+|.+.
T Consensus 86 ~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 86 NLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp ECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred eCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999999 55554 44444 999999999986
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=1.4e-11 Score=95.18 Aligned_cols=131 Identities=17% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCccceEEeccccCCCCcccccC--CCCCCCeEeeccc--ccccc--ccCCCC-C--CCCCcccEEEccCCcCCCCCCcc
Q 038090 53 LTNLIEIYLIDVDTSSAVSPTLT--NLSSLIYLSISEC--SSQDL--FGYLPK-S--QKGSLLEDLRLSFTKFLGKIPPS 123 (186)
Q Consensus 53 l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~--~l~~~--~~~~~~-~--~~~~~L~~L~l~~~~~~~~~~~~ 123 (186)
.++|++|++..+.+.......++ .+++|++|+++.+ ..... ...+.. + ..+++|+.|++.+|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 45566666555544322222222 4666666666421 00000 000111 1 23566777777766654322222
Q ss_pred c---CCCCCCCEEEcCCCcCCCC----CchhhhccCCCCEEeccCCcccccCChhHHHhCCCCCCCC
Q 038090 124 L---GNLTNLEDRYLSDNGFSGE----LPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSVALS 183 (186)
Q Consensus 124 ~---~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~~l~ 183 (186)
+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+++..-..+.+.+..-..++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~ 338 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEec
Confidence 2 2456777777777766643 2223345677777777777776555555554444333443
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.5e-09 Score=84.93 Aligned_cols=159 Identities=15% Similarity=0.062 Sum_probs=77.5
Q ss_pred ccceecccccccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCe
Q 038090 3 QRKINEQDFGVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIY 82 (186)
Q Consensus 3 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 82 (186)
|+.+.+.. .+..+...+|..|.+|+.+++++|.+ ..++...-...+|+.+.+..+ +.......|..+.+|+.
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l------~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKI------TKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCC------SEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcc------eEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCE
Confidence 44444443 34444455677777777777777662 122211111355555555533 33333445556666666
Q ss_pred Eeecccccccc------------------ccCCCC--CCCCCcccEEEccCCcCC-----CCCCcccCCCCCCCEEEcCC
Q 038090 83 LSISECSSQDL------------------FGYLPK--SQKGSLLEDLRLSFTKFL-----GKIPPSLGNLTNLEDRYLSD 137 (186)
Q Consensus 83 L~l~~~~l~~~------------------~~~~~~--~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~ 137 (186)
+.+..+ +..+ ...++. +..+++|+.+.+.++.+. ......|..|++|+.+.+.+
T Consensus 231 l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 231 IEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp EECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred EecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 665443 1100 111222 455566666666554432 12334555666666666663
Q ss_pred CcCCCCCchhhhccCCCCEEeccCCcccccCChhHH
Q 038090 138 NGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLL 173 (186)
Q Consensus 138 n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~ 173 (186)
+ +..-....|..|.+|+.+.+..+ ++ .+....+
T Consensus 310 ~-i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF 342 (401)
T 4fdw_A 310 S-IRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAF 342 (401)
T ss_dssp T-CCEECTTTTTTCCSCCEEEECTT-CC-EECTTSS
T ss_pred c-eEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhC
Confidence 2 33122334556666666666433 44 4444333
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.90 E-value=6.3e-09 Score=81.38 Aligned_cols=148 Identities=9% Similarity=0.058 Sum_probs=94.3
Q ss_pred hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccc-ccccC
Q 038090 18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQ-DLFGY 96 (186)
Q Consensus 18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~ 96 (186)
..+|.+|.+|+.+++..+- ..--...|.+ .+|+.+.+.+ .+.......|..+.+|+.+.+.++... .....
T Consensus 219 ~~aF~~~~~L~~l~l~~~l------~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 219 SQAFLKTSQLKTIEIPENV------STIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp TTTTTTCTTCCCEECCTTC------CEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred hhHhhCCCCCCEEecCCCc------cCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccE
Confidence 3444555555555555432 1111112333 4566666632 334344567889999999999887432 00112
Q ss_pred CCC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHH
Q 038090 97 LPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLI 174 (186)
Q Consensus 97 ~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~ 174 (186)
++. +..|++|+.+.+.. .+.......|..|.+|+.+.+..+ +..-...+|..+ +|+.+++.+|.+. .++...+.
T Consensus 291 I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~ 366 (401)
T 4fdw_A 291 IHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWY 366 (401)
T ss_dssp ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCC
T ss_pred ECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-cccccccc
Confidence 443 78999999999984 455455678889999999999766 442334568888 9999999999887 66665554
Q ss_pred hCC
Q 038090 175 RLP 177 (186)
Q Consensus 175 ~l~ 177 (186)
.++
T Consensus 367 ~~~ 369 (401)
T 4fdw_A 367 GFP 369 (401)
T ss_dssp CSC
T ss_pred CCC
Confidence 554
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=8.9e-09 Score=79.44 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=99.4
Q ss_pred hHHhhcccCeeeCCCCCcc---c-cccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeecccccccccc
Q 038090 20 RVARALQLGVLDLSYNHFA---F-KLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFG 95 (186)
Q Consensus 20 ~~~~l~~L~~L~l~~~~~~---~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 95 (186)
++..+++|+.|.+.+.... + +.....+...+..+++|+.|.++++.-. ..+. + .+++|++|++..+.+. .
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~---~ 207 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLP---D 207 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCC---H
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCC---h
Confidence 3567899999999776410 0 0111236667788999999999987312 2333 3 3889999999988542 2
Q ss_pred CCCC-C--CCCCcccEEEccC--CcCCCC-----CCccc--CCCCCCCEEEcCCCcCCCCCchhhh---ccCCCCEEecc
Q 038090 96 YLPK-S--QKGSLLEDLRLSF--TKFLGK-----IPPSL--GNLTNLEDRYLSDNGFSGELPTSLG---KLNSLKTFDIS 160 (186)
Q Consensus 96 ~~~~-~--~~~~~L~~L~l~~--~~~~~~-----~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~---~~~~L~~l~l~ 160 (186)
.... + ..+++|+.|+++. +...+. +...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 2112 2 3678899998853 221111 11122 2478999999999988754443343 57899999999
Q ss_pred CCcccccCChhHHH---hCCCCC
Q 038090 161 SCNILGKIPTSLLI---RLPPSV 180 (186)
Q Consensus 161 ~n~~~~~~p~~~~~---~l~~~~ 180 (186)
+|.+.+..+..+.. .++.+.
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCS
T ss_pred CCCCChHHHHHHHhhcccCCcce
Confidence 99998655555542 345543
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=1.6e-09 Score=75.96 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=44.6
Q ss_pred CCCCcccEEEccCCcCCCC----CCcccCCCCCCCEEEc--CCCcCCCC----CchhhhccCCCCEEeccCCccc
Q 038090 101 QKGSLLEDLRLSFTKFLGK----IPPSLGNLTNLEDRYL--SDNGFSGE----LPTSLGKLNSLKTFDISSCNIL 165 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L--~~n~~~~~----~~~~~~~~~~L~~l~l~~n~~~ 165 (186)
...++|+.|++++|.+.+. +...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566666666666533 3445566678888998 77888743 3344566789999999999886
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.67 E-value=4.6e-08 Score=72.22 Aligned_cols=84 Identities=18% Similarity=0.221 Sum_probs=66.3
Q ss_pred CCCCcccEEEccCCcCCC--CCCcccCCCCCCCEEEcCCCcCCCCCchhhhccC--CCCEEeccCCcccccCCh------
Q 038090 101 QKGSLLEDLRLSFTKFLG--KIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLN--SLKTFDISSCNILGKIPT------ 170 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~p~------ 170 (186)
..+++|+.|++++|.+.+ .++..+..+++|+.|+|++|.+.+ + ..+..++ +|++|++++|++++.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-c-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356789999999999986 344566688999999999999994 3 3355555 899999999999977773
Q ss_pred hHHHhCCCCCCCCCCC
Q 038090 171 SLLIRLPPSVALSSTP 186 (186)
Q Consensus 171 ~~~~~l~~~~~l~~~~ 186 (186)
.+...+|.+..|++.+
T Consensus 245 ~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHCTTCCEESSCB
T ss_pred HHHHHCcccCeECCcC
Confidence 4567899999888753
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.2e-08 Score=71.40 Aligned_cols=121 Identities=13% Similarity=0.024 Sum_probs=84.3
Q ss_pred hHHhhcccCeeeCCCC-CccccccccchhHHHHcCCccceEEeccccCCCCc----ccccCCCCCCCeEeeccccccccc
Q 038090 20 RVARALQLGVLDLSYN-HFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAV----SPTLTNLSSLIYLSISECSSQDLF 94 (186)
Q Consensus 20 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~ 94 (186)
.+..++.|+.|++++| .+.- .-...+...+....+|++|++++|.+.... ...+...++|++|++++|.+....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 4456789999999999 7310 001224555666789999999999887432 334555688999999999665211
Q ss_pred c-CCCC-CCCCCcccEEEc--cCCcCCCCC----CcccCCCCCCCEEEcCCCcCC
Q 038090 95 G-YLPK-SQKGSLLEDLRL--SFTKFLGKI----PPSLGNLTNLEDRYLSDNGFS 141 (186)
Q Consensus 95 ~-~~~~-~~~~~~L~~L~l--~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~ 141 (186)
. .+.+ +...++|+.|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1 1233 667788999999 888887543 344555689999999999876
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=4.7e-08 Score=67.61 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=45.1
Q ss_pred cccCeeeCCCCCccccccccchhHHHHcCCccceEEecccc-CCCCcccccCCC----CCCCeEeeccccccccccCCCC
Q 038090 25 LQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVD-TSSAVSPTLTNL----SSLIYLSISECSSQDLFGYLPK 99 (186)
Q Consensus 25 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~l~~~~~~~~~ 99 (186)
..|+.||+++|. + ...-...+.++++|++|++++|. +++..-..++.+ ++|++|++++|. .+++.-..
T Consensus 61 ~~L~~LDLs~~~--I---td~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~--~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC--I---MSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG--NVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC--C---CGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT--TCCHHHHH
T ss_pred ceEeEEeCcCCC--c---cHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC--cCCHHHHH
Confidence 356777777776 3 33222344566777777777764 332222234443 357777777763 12221112
Q ss_pred -CCCCCcccEEEccCCc
Q 038090 100 -SQKGSLLEDLRLSFTK 115 (186)
Q Consensus 100 -~~~~~~L~~L~l~~~~ 115 (186)
+..+++|+.|++++|.
T Consensus 134 ~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HGGGCTTCCEEEEESCT
T ss_pred HHhcCCCCCEEECCCCC
Confidence 4566677777777665
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=5.4e-08 Score=71.84 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=20.2
Q ss_pred CCCEEEcCCCcCCCCCc-------hhhhccCCCCEEe
Q 038090 129 NLEDRYLSDNGFSGELP-------TSLGKLNSLKTFD 158 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~~~-------~~~~~~~~L~~l~ 158 (186)
+|++|++.+|.+.+.+| ..+..+++|+.||
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 67777777777765443 2356778888877
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.32 E-value=1.3e-07 Score=65.36 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=57.7
Q ss_pred CCCeEeeccccccccccCCCC-CCCCCcccEEEccCCc-CCCCCCcccCCC----CCCCEEEcCCCc-CCCCCchhhhcc
Q 038090 79 SLIYLSISECSSQDLFGYLPK-SQKGSLLEDLRLSFTK-FLGKIPPSLGNL----TNLEDRYLSDNG-FSGELPTSLGKL 151 (186)
Q Consensus 79 ~L~~L~l~~~~l~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~~ 151 (186)
.|++||+++|.++ ..-.. +..+++|+.|++++|. +++..-..+..+ ++|++|++++|. +++..-..+..+
T Consensus 62 ~L~~LDLs~~~It---d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSCIM---SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CEEEEEEESCCCC---GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred eEeEEeCcCCCcc---HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4666666666322 21112 5566667777777664 443333334443 368888888874 664444556778
Q ss_pred CCCCEEeccCC-ccccc--CChhHHHhCCCC
Q 038090 152 NSLKTFDISSC-NILGK--IPTSLLIRLPPS 179 (186)
Q Consensus 152 ~~L~~l~l~~n-~~~~~--~p~~~~~~l~~~ 179 (186)
++|++|++++| .+++. .-..+.+.+|.+
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 88888888887 45532 234455567764
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.05 E-value=1e-05 Score=62.80 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=43.8
Q ss_pred HHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCC
Q 038090 50 AKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNL 127 (186)
Q Consensus 50 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l 127 (186)
|.++..|+.+.+...... .....|..+.+|+.+.+... ...+++ +..+.+|+.+.+..+ +.......|..|
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-----i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-----ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-----CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCCc-----ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 344445555554433211 22234444555555544322 112222 444455555554332 221223344555
Q ss_pred CCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 128 TNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 128 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
.+|+.+.+..+ ++.-...+|..|.+|+.+++.++
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 55555555433 22112234555555555555544
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.88 E-value=5.6e-05 Score=58.21 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=89.0
Q ss_pred hhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCC
Q 038090 19 SRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLP 98 (186)
Q Consensus 19 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 98 (186)
..+..+.+++.+.+..+- ...-...+.++..|+.+.+..+ +.......|..+.+|+.+.+..+ ...++
T Consensus 211 ~~f~~~~~l~~i~~~~~~------~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-----i~~i~ 278 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGV------TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-----VKTVP 278 (379)
T ss_dssp TTTTTCSSCSEEECCTTC------CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-----CSEEC
T ss_pred cccccccccceeeeccce------eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-----ceecc
Confidence 344566777777776553 2222234566778888888664 33334456777888888887654 12233
Q ss_pred C--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhH
Q 038090 99 K--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSL 172 (186)
Q Consensus 99 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~ 172 (186)
. +..+.+|+.+.+.++.+.......|..|.+|+.+.+..+ ++.-...+|..|.+|+.+.+..+ ++ .+...-
T Consensus 279 ~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~a 351 (379)
T 4h09_A 279 YLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGA 351 (379)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTT
T ss_pred ccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhH
Confidence 2 678888888888777666455677888888999888765 44122356778888888887543 44 444433
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=9.8e-05 Score=57.27 Aligned_cols=74 Identities=15% Similarity=-0.023 Sum_probs=33.0
Q ss_pred CCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCC
Q 038090 101 QKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPP 178 (186)
Q Consensus 101 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~ 178 (186)
..+.+|+.+.+..+ +.......|..+.+|+.+++.++ ++.-...+|..|.+|+.+.+..+ ++ .+....+..++.
T Consensus 294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 34445555554332 22122344555555666655433 22112234555555665555443 43 444444334433
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.79 E-value=8e-05 Score=57.76 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=79.4
Q ss_pred hHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC
Q 038090 20 RVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK 99 (186)
Q Consensus 20 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 99 (186)
++..+..++.+.+..+. .......+..+..++.+...... .....|..+.+|+.+.+..+ ...+.+
T Consensus 248 ~f~~~~~l~~~~~~~~~------~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-----i~~I~~ 313 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK------LRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-----VKFIGE 313 (394)
T ss_dssp TTTTCSSCCEEEECCTT------CEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-----CCEECT
T ss_pred cccccccceeEEcCCCc------ceeeccccccccccceeccCcee---eccccccccccccccccccc-----cceech
Confidence 34445555555555443 11111234445555555544432 12345777888888888665 223333
Q ss_pred --CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 100 --SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 100 --~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
+..+.+|+.+++..+ +.......|..|.+|+.+.+..+ +..-...+|..|.+|+.+++..+
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 778899999998644 44345678889999999999877 54233456889999999998654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.00063 Score=52.71 Aligned_cols=129 Identities=12% Similarity=0.048 Sum_probs=66.8
Q ss_pred hhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCC
Q 038090 18 ISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYL 97 (186)
Q Consensus 18 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 97 (186)
..+|..|..|+.+.+.++- ..--...|.++..|+.+.+.. .+.......|..+.+|+.+.+..+ ...+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~------~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-----v~~I 325 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV------VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-----ITQI 325 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC------CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-----CCEE
T ss_pred cceeeecccccEEeccccc------ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-----ccEe
Confidence 3455666777777766554 111122355666777777653 233333456667777777776554 1222
Q ss_pred CC--CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCCCCchhhhccCCCCEEeccCC
Q 038090 98 PK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 98 ~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n 162 (186)
.+ +..|.+|+.+.+..+ +.......|..|.+|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 326 ~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 326 LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 22 566677777776433 33234456667777777777665432 123445566666665544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.52 E-value=0.00073 Score=51.92 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=79.4
Q ss_pred HcCCccceEEeccccCCCCcccccCCCCCCCeEeeccccccccccCCCC--CCCCCcccEEEccCCcCCCCCCcccCCCC
Q 038090 51 KKLTNLIEIYLIDVDTSSAVSPTLTNLSSLIYLSISECSSQDLFGYLPK--SQKGSLLEDLRLSFTKFLGKIPPSLGNLT 128 (186)
Q Consensus 51 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 128 (186)
....+++.+.+..+ +.......|..+..|+.+.+..+ + ..+.. +..+.+++.+.+..+ +.......|..+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v----~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-V----TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-C----CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-c----cEeCccccceeehhcccccccc-ceecccccccccc
Confidence 34455666665443 22233456777888888887665 1 12222 667788888887543 3323456788899
Q ss_pred CCCEEEcCCCcCCCCCchhhhccCCCCEEeccCCcccccCChhHHHhCCCCC
Q 038090 129 NLEDRYLSDNGFSGELPTSLGKLNSLKTFDISSCNILGKIPTSLLIRLPPSV 180 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~p~~~~~~l~~~~ 180 (186)
+|+.+.+.++.++.-....|..|.+|+.+.+..+ ++ .+...-+..+..+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALS 336 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCC
Confidence 9999999988887333456889999999999654 65 77766555655543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.19 E-value=9.5e-05 Score=51.94 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=60.7
Q ss_pred CCccceEEeccc-cCCCC----cccccCCCCCCCeEeeccccccccc-cCCCC-CCCCCcccEEEccCCcCCCCC----C
Q 038090 53 LTNLIEIYLIDV-DTSSA----VSPTLTNLSSLIYLSISECSSQDLF-GYLPK-SQKGSLLEDLRLSFTKFLGKI----P 121 (186)
Q Consensus 53 l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~-~~~~~~L~~L~l~~~~~~~~~----~ 121 (186)
-..|++|+++++ .+... +.+.+..=..|++|++++|.+...- ..+.+ +..-+.|+.|++++|.+.+.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345555555553 33311 1223333345666666666443110 11122 344456777777777776432 2
Q ss_pred cccCCCCCCCEEEcCCCcC---CC----CCchhhhccCCCCEEeccCCcc
Q 038090 122 PSLGNLTNLEDRYLSDNGF---SG----ELPTSLGKLNSLKTFDISSCNI 164 (186)
Q Consensus 122 ~~~~~l~~L~~L~L~~n~~---~~----~~~~~~~~~~~L~~l~l~~n~~ 164 (186)
..+..-+.|++|+|++|.. .. .+.+.+...++|+.++++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344446788888876533 21 1344566778899999988765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.0021 Score=41.93 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=37.7
Q ss_pred CeEeeccccccccccCCCCCCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCCcCCC
Q 038090 81 IYLSISECSSQDLFGYLPKSQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDNGFSG 142 (186)
Q Consensus 81 ~~L~l~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 142 (186)
..++.+++.++ ...+|. .-..+++.|++++|.+...-+..|..+++|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~--~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLT--WASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCC--TTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCc--cccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 36667776432 013343 112357888888888875555566777888888888887764
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.69 E-value=0.001 Score=46.72 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=62.9
Q ss_pred cCCCCCCCeEeeccc-ccccc-ccCCCC-CCCCCcccEEEccCCcCCCCCCcccC----CCCCCCEEEcCCCcCCCCC--
Q 038090 74 LTNLSSLIYLSISEC-SSQDL-FGYLPK-SQKGSLLEDLRLSFTKFLGKIPPSLG----NLTNLEDRYLSDNGFSGEL-- 144 (186)
Q Consensus 74 ~~~l~~L~~L~l~~~-~l~~~-~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~L~~n~~~~~~-- 144 (186)
+..-+.|++|+++++ .+... ...+.+ +..-+.|+.|++++|.+.+.....+. .-+.|++|+|+.|.+.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344578999999985 54311 012333 56677899999999999765444433 4478999999999998543
Q ss_pred --chhhhccCCCCEEeccCC
Q 038090 145 --PTSLGKLNSLKTFDISSC 162 (186)
Q Consensus 145 --~~~~~~~~~L~~l~l~~n 162 (186)
.+.+...+.|++|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 344566778999999876
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.68 E-value=0.0054 Score=39.93 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=16.0
Q ss_pred CCCEEEcCCCcCCCCCc-hhhhccCCCCEEeccCCcc
Q 038090 129 NLEDRYLSDNGFSGELP-TSLGKLNSLKTFDISSCNI 164 (186)
Q Consensus 129 ~L~~L~L~~n~~~~~~~-~~~~~~~~L~~l~l~~n~~ 164 (186)
++++|+|++|.++ .++ ..|..+++|++|++++|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3445555555554 332 2234444455555554444
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.63 E-value=3.8 Score=24.93 Aligned_cols=47 Identities=15% Similarity=-0.006 Sum_probs=26.7
Q ss_pred cccCcChhhHHhhcccCeeeCCCCCccccccccchhHHHHcCCccceEEeccc
Q 038090 12 GVETSNISRVARALQLGVLDLSYNHFAFKLQKSGLSNLAKKLTNLIEIYLIDV 64 (186)
Q Consensus 12 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 64 (186)
+++.+.-.+|.+|.+|+.+.|..+- ..--...|.++.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v------~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI------GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS------SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch------heEcHHHHhccCCccEEEEcCC
Confidence 4445555566677777777776653 2222224566666666666553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.15 E-value=7.1 Score=23.69 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=25.5
Q ss_pred CCCCCcccEEEccCCcCCCCCCcccCCCCCCCEEEcCCC
Q 038090 100 SQKGSLLEDLRLSFTKFLGKIPPSLGNLTNLEDRYLSDN 138 (186)
Q Consensus 100 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 138 (186)
+..|++|+.+.+-.+- .......|..|.+|+.+.+...
T Consensus 16 F~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 16 FAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred hcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 6677778877775432 2245566778888888877653
Done!