BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038094
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XYD|A Chain A, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
pdb|2XYD|B Chain B, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
Length = 610
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 139 IDQLRAIEDMVGHIN------SIKAEIKCGEDTFFTSSKILRGGVLKLDPNKPEVRNAVE 192
+DQL + +GHI + ++ G + F + G VL L + PE + +
Sbjct: 353 MDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAI---GDVLALSVSTPEHLHKIG 409
Query: 193 DLDGITSDTDT 203
LD +T+DT++
Sbjct: 410 LLDRVTNDTES 420
>pdb|3NXQ|A Chain A, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
pdb|3NXQ|B Chain B, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
Length = 629
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 139 IDQLRAIEDMVGHIN------SIKAEIKCGEDTFFTSSKILRGGVLKLDPNKPEVRNAVE 192
+DQL + +GHI + ++ G + F + G VL L + PE + +
Sbjct: 353 MDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAI---GDVLALSVSTPEHLHKIG 409
Query: 193 DLDGITSDTDT 203
LD +T+DT++
Sbjct: 410 LLDRVTNDTES 420
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
Query: 63 LKFAFLVWLQLASTDRARQLYENYLSPFLLRCQAKADQLSATTHAKFDQLRAITQAKVDQ 122
+K + + T+ +Q E YL LL C+ D++ A D R K Q
Sbjct: 95 IKLVTTIGVHPTRTNELKQ--EGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQ 152
Query: 123 L---RAITL-------RPFLLTCQAKIDQLRAIEDMVGHINSIKAEIKCGEDTFFTSSKI 172
L R +++ PF C+ L + +G+ N K + C + T ++I
Sbjct: 153 LSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGY-NGCKGVVHCFDGTEEEMNQI 211
Query: 173 LRGG 176
L G
Sbjct: 212 LNEG 215
>pdb|2C6N|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6N|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6F|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
pdb|2C6F|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
Length = 612
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 139 IDQLRAIEDMVGHIN------SIKAEIKCGEDTFFTSSKILRGGVLKLDPNKPEVRNAVE 192
+DQL + +GHI + ++ G + F + G VL L + PE + +
Sbjct: 353 MDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPGFHEAI---GDVLALSVSTPEHLHKIG 409
Query: 193 DLDGITSDTDT 203
LD +T+DT++
Sbjct: 410 LLDRVTNDTES 420
>pdb|2X12|A Chain A, Ph-Induced Modulation Of Streptococcus Parasanguinis
Adhesion By Fap1 Fimbriae
pdb|2X12|B Chain B, Ph-Induced Modulation Of Streptococcus Parasanguinis
Adhesion By Fap1 Fimbriae
Length = 348
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 120 VDQLRAITLRPFLLTCQAKIDQLRAIEDMVGHINSIKAEIKCGEDTFFTSSKILRGGVLK 179
+D + + L L+ Q+ QL A ++++G N+ A+++ T +++ L ++K
Sbjct: 62 LDAEQQLELXKSLVATQS---QLEATKNLIGDPNATVADLQIAYTTLGNNTQALGNELIK 118
Query: 180 LDPN 183
L+PN
Sbjct: 119 LNPN 122
>pdb|3RGU|A Chain A, Structure Of Fap-Nra At Ph 5.0
pdb|3RGU|B Chain B, Structure Of Fap-Nra At Ph 5.0
pdb|3RGU|C Chain C, Structure Of Fap-Nra At Ph 5.0
pdb|3RGU|D Chain D, Structure Of Fap-Nra At Ph 5.0
Length = 132
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 141 QLRAIEDMVGHINSIKAEIKCGEDTFFTSSKILRGGVLKLDPN 183
QL A ++++G N+ A+++ T +++ L ++KL+PN
Sbjct: 70 QLEATKNLIGDPNATVADLQIAYTTLGNNTQALGNELIKLNPN 112
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 48 VFADKFLTWFSMYYPLKFAFLVWLQLASTDRARQLYENYLS 88
+++++F+ W YY K F + TD +++ ENY+
Sbjct: 483 IYSERFVEWKDQYYKDKLDF----SINDTDSLKEMTENYVG 519
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,666,887
Number of Sequences: 62578
Number of extensions: 204843
Number of successful extensions: 591
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 9
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)