Query 038094
Match_columns 203
No_of_seqs 155 out of 654
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:31:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1726 HVA22/DP1 gene product 100.0 8.7E-36 1.9E-40 255.8 16.6 148 1-148 1-151 (225)
2 PF03134 TB2_DP1_HVA22: TB2/DP 100.0 4.1E-30 8.9E-35 192.8 10.3 90 2-91 5-94 (94)
3 KOG1725 Protein involved in me 100.0 3.7E-30 8.1E-35 215.8 8.1 105 1-105 57-161 (186)
4 COG5052 YOP1 Protein involved 99.8 5.3E-21 1.1E-25 159.1 10.5 103 4-106 61-164 (186)
5 KOG1726 HVA22/DP1 gene product 71.9 27 0.00059 30.7 8.3 78 27-104 96-173 (225)
6 PRK09174 F0F1 ATP synthase sub 70.1 69 0.0015 27.3 11.4 23 173-195 180-202 (204)
7 PF12758 DUF3813: Protein of u 55.9 68 0.0015 22.9 6.3 33 115-147 25-57 (63)
8 KOG2629 Peroxisomal membrane a 54.0 85 0.0019 28.8 8.2 16 77-92 98-113 (300)
9 PF02453 Reticulon: Reticulon; 49.5 5.5 0.00012 31.5 0.0 22 90-111 148-169 (169)
10 PF09726 Macoilin: Transmembra 48.9 33 0.00072 34.7 5.3 58 31-88 28-113 (697)
11 KOG1792 Reticulon [Intracellul 47.0 71 0.0015 28.0 6.5 83 30-117 125-215 (230)
12 PF10112 Halogen_Hydrol: 5-bro 44.8 1.8E+02 0.0039 24.1 11.2 21 30-50 4-24 (199)
13 KOG2910 Uncharacterized conser 42.1 1.2E+02 0.0026 26.3 6.9 49 90-142 27-75 (209)
14 COG2928 Uncharacterized conser 42.1 1.8E+02 0.0038 25.7 8.1 31 32-62 20-52 (222)
15 COG4618 ArpD ABC-type protease 30.8 3E+02 0.0066 27.5 8.5 31 54-84 144-174 (580)
16 PRK06553 lipid A biosynthesis 30.3 3.9E+02 0.0084 23.6 9.2 71 30-108 19-90 (308)
17 KOG0365 Beta subunit of farnes 30.0 40 0.00087 31.9 2.3 17 30-46 98-114 (423)
18 PF14423 Imm5: Immunity protei 29.6 1.1E+02 0.0023 26.2 4.7 29 163-191 142-170 (183)
19 COG0721 GatC Asp-tRNAAsn/Glu-t 27.5 77 0.0017 24.0 3.2 58 138-197 27-87 (96)
20 COG0013 AlaS Alanyl-tRNA synth 25.2 3.4E+02 0.0073 28.6 8.2 73 72-144 294-379 (879)
21 TIGR00996 Mtu_fam_mce virulenc 24.0 1.4E+02 0.0031 25.9 4.7 15 181-195 272-286 (291)
22 COG1400 SEC65 Signal recogniti 23.9 45 0.00097 25.5 1.3 33 162-194 6-44 (93)
23 KOG4797 Transcriptional regula 23.7 3.1E+02 0.0067 21.8 5.9 44 96-144 44-88 (123)
24 PF08702 Fib_alpha: Fibrinogen 23.0 4.1E+02 0.0089 21.5 7.5 38 87-124 23-60 (146)
25 KOG0983 Mitogen-activated prot 21.6 46 0.00099 31.0 1.1 57 134-198 86-145 (391)
26 PF07889 DUF1664: Protein of u 21.6 2E+02 0.0043 23.0 4.6 11 185-195 106-116 (126)
27 PF14975 DUF4512: Domain of un 21.2 52 0.0011 24.9 1.2 14 81-94 13-26 (88)
28 PF04799 Fzo_mitofusin: fzo-li 20.2 1.3E+02 0.0028 25.4 3.5 39 77-115 56-94 (171)
No 1
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=100.00 E-value=8.7e-36 Score=255.82 Aligned_cols=148 Identities=25% Similarity=0.551 Sum_probs=141.1
Q ss_pred ChhhhHhHHHhHhhHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHhccCcch
Q 038094 1 MVLTLRCSVGVALPVYSTFKAIER--KDEDEQQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLVWLQLASTDR 78 (203)
Q Consensus 1 ~~r~l~~~ig~lyPaY~S~kaL~~--~~~~~~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~KllfllWL~lP~~~G 78 (203)
|.|++.+++|++||||+|||++++ ++.+++..|++||||||+++++|.++|++++|+|||+++|++|++||.+|.++|
T Consensus 1 ~~~~lv~v~G~~yPAy~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G 80 (225)
T KOG1726|consen 1 MIRLLVLVFGYAYPAYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKG 80 (225)
T ss_pred CeehHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCc
Confidence 678999999999999999999999 677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHhHHHhhHHHHHHHHHhhhh
Q 038094 79 ARQLYENYLSPFLLRCQAKADQLSATTHAKFDQ-LRAITQAKVDQLRAITLRPFLLTCQAKIDQLRAIEDM 148 (203)
Q Consensus 79 A~~IY~~~I~P~l~~~E~~ID~~L~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (203)
+.++|+++++|++.+||++||+.+..+++++.+ ++.+++++++|++..++.++.++++++..++|..+++
T Consensus 81 ~~~vY~~f~~p~ls~~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~ 151 (225)
T KOG1726|consen 81 ASYVYRKFLRPFLSKHEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSD 151 (225)
T ss_pred cHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhh
Confidence 999999999999999999999999999999765 5899999999999999999999999999999974444
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.97 E-value=4.1e-30 Score=192.83 Aligned_cols=90 Identities=40% Similarity=0.915 Sum_probs=88.0
Q ss_pred hhhhHhHHHhHhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHhccCcchHHH
Q 038094 2 VLTLRCSVGVALPVYSTFKAIERKDEDEQQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLVWLQLASTDRARQ 81 (203)
Q Consensus 2 ~r~l~~~ig~lyPaY~S~kaL~~~~~~~~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~KllfllWL~lP~~~GA~~ 81 (203)
.+++|+++|++||+|+|+|+++++++++.++||+||++||+++++|.+++.+++|+|+|+++|++|++||++|+++||++
T Consensus 5 ~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~Ga~~ 84 (94)
T PF03134_consen 5 ARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQGAEY 84 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCCcHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhh
Q 038094 82 LYENYLSPFL 91 (203)
Q Consensus 82 IY~~~I~P~l 91 (203)
+|+++++|++
T Consensus 85 iy~~~i~P~~ 94 (94)
T PF03134_consen 85 IYDKFIRPFL 94 (94)
T ss_pred HHHHHccccC
Confidence 9999999975
No 3
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-30 Score=215.76 Aligned_cols=105 Identities=30% Similarity=0.677 Sum_probs=100.5
Q ss_pred ChhhhHhHHHhHhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHhccCcchHH
Q 038094 1 MVLTLRCSVGVALPVYSTFKAIERKDEDEQQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLVWLQLASTDRAR 80 (203)
Q Consensus 1 ~~r~l~~~ig~lyPaY~S~kaL~~~~~~~~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~KllfllWL~lP~~~GA~ 80 (203)
+.+++|+++|++||+|+|++++|++++.|+++||+||++||+++++|.+...+++|+|+||++|++|++||++|+++||.
T Consensus 57 ~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~~~Ga~ 136 (186)
T KOG1725|consen 57 GGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQFNGAA 136 (186)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccCCCCce
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhhhhHHHHHHHHHH
Q 038094 81 QLYENYLSPFLLRCQAKADQLSATT 105 (203)
Q Consensus 81 ~IY~~~I~P~l~~~E~~ID~~L~~~ 105 (203)
++|+++++|++.+|+..+|+..+..
T Consensus 137 ~iY~~~vrp~~~~~~~~~~~~~~~~ 161 (186)
T KOG1725|consen 137 IIYNHIVRPFFLKHSREIDDIEDAN 161 (186)
T ss_pred eeechhhhhhhhhhhhhhhhhhhcc
Confidence 9999999999999999999876543
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.85 E-value=5.3e-21 Score=159.14 Aligned_cols=103 Identities=24% Similarity=0.465 Sum_probs=95.3
Q ss_pred hhHhHHHhHhhHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHhccCcchHHHHH
Q 038094 4 TLRCSVGVALPVYSTFKAIERKDEDEQQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLVWLQLASTDRARQLY 83 (203)
Q Consensus 4 ~l~~~ig~lyPaY~S~kaL~~~~~~~~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~KllfllWL~lP~~~GA~~IY 83 (203)
++.+++|+..|++.|.++++..++.+++|||+||+|+++.+.+|.+...+++|+||||..|.+|++|+..|+|+||..||
T Consensus 61 ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt~GA~~IY 140 (186)
T COG5052 61 ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRTEGARIIY 140 (186)
T ss_pred HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCceeeeH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhhhHH-HHHHHHHHH
Q 038094 84 ENYLSPFLLRCQAK-ADQLSATTH 106 (203)
Q Consensus 84 ~~~I~P~l~~~E~~-ID~~L~~~~ 106 (203)
+++++|+.++|-.. ||+...+..
T Consensus 141 ~~~i~p~~s~~~~~~IektV~~~~ 164 (186)
T COG5052 141 DDIIAPDVSDHGFRTIEKTVKNGT 164 (186)
T ss_pred HhhccccccHHHHHHHHHHHHhhc
Confidence 99999999998766 666555443
No 5
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=71.95 E-value=27 Score=30.70 Aligned_cols=78 Identities=13% Similarity=-0.004 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHhccCcchHHHHHHHhhchhhhhhhHHHHHHHHH
Q 038094 27 EDEQQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLVWLQLASTDRARQLYENYLSPFLLRCQAKADQLSAT 104 (203)
Q Consensus 27 ~~~~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~KllfllWL~lP~~~GA~~IY~~~I~P~l~~~E~~ID~~L~~ 104 (203)
.++...-+.+|....++..++.+...+++|-+.|-.-+..+..|...|..+++...+.....|....+...+-+.+..
T Consensus 96 ~E~eid~~l~~~k~~~~~~a~~~~~r~l~~~~~~~~~a~~~~~~~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T KOG1726|consen 96 HEEEIDRMLVEAKERVYDAAVSILKRALNYAQTYALEAAVFSQGQLTPRLQRSSSDQDLTTIPEESGKKAPDLDVLEN 173 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhhhcCccccccccCCcccchh
Confidence 356778899999999999999999999999999999999999999999999999999999999887766665555444
No 6
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=70.08 E-value=69 Score=27.33 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=18.4
Q ss_pred cccCccccCCCchHHHHhhhhcc
Q 038094 173 LRGGVLKLDPNKPEVRNAVEDLD 195 (203)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~ 195 (203)
...++|..+.++.+|+.||+...
T Consensus 180 I~~Kllg~~~dk~~~~~av~~~~ 202 (204)
T PRK09174 180 IVEQLIGGTADKASVAAAVKAAR 202 (204)
T ss_pred HHHHHhCcccCHHHHHHHHHHHh
Confidence 34678888899999999998643
No 7
>PF12758 DUF3813: Protein of unknown function (DUF3813); InterPro: IPR024217 This entry represents a family of Bacillus proteins. Their function is unknown.
Probab=55.90 E-value=68 Score=22.92 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHhHHHhhHHHHHHHHHhhh
Q 038094 115 ITQAKVDQLRAITLRPFLLTCQAKIDQLRAIED 147 (203)
Q Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d 147 (203)
-.+++|..|++.+-.++.-+..+-..||+.++|
T Consensus 25 ~~q~~i~rAKnAlsSAyanss~aE~~QL~q~Q~ 57 (63)
T PF12758_consen 25 EQQKAIQRAKNALSSAYANSSDAEREQLRQFQD 57 (63)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467789999999999999999999999998765
No 8
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.99 E-value=85 Score=28.76 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=12.3
Q ss_pred chHHHHHHHhhchhhh
Q 038094 77 DRARQLYENYLSPFLL 92 (203)
Q Consensus 77 ~GA~~IY~~~I~P~l~ 92 (203)
.|+..+|++||.|.+.
T Consensus 98 y~~y~~~K~YV~P~~l 113 (300)
T KOG2629|consen 98 YAAYRFVKSYVLPRFL 113 (300)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3677788888888774
No 9
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=49.51 E-value=5.5 Score=31.53 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 038094 90 FLLRCQAKADQLSATTHAKFDQ 111 (203)
Q Consensus 90 ~l~~~E~~ID~~L~~~~~~~~~ 111 (203)
..++|+++||+.++.+++++++
T Consensus 148 ly~~~~~~Id~~~~~~~~~~~k 169 (169)
T PF02453_consen 148 LYEKYQEEIDQYVAKVKEKVKK 169 (169)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3467899999999988877653
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.92 E-value=33 Score=34.71 Aligned_cols=58 Identities=5% Similarity=0.195 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hhhchHHHHHH-----------------------HHHHHhccC----cchHHHH
Q 038094 31 QKWLLYWAAYGTFSIAEVFADKFLT-WFSMYYPLKFA-----------------------FLVWLQLAS----TDRARQL 82 (203)
Q Consensus 31 ~~WL~YWiVya~~~llE~~~d~ll~-wiPfY~~~Kll-----------------------fllWL~lP~----~~GA~~I 82 (203)
-..+.+=++++++.+++.++++=+. ..|+|-+++.+ +++|++.|. |-++.|+
T Consensus 28 ~~~~~~~~~w~~~~~~d~~~~~r~e~~~p~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v 107 (697)
T PF09726_consen 28 FLYVKFLLVWALVLLADFMLEFRFEYLWPFWLLLRSVYDSFKYQGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYV 107 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455666666777788888877664 45887665521 235666665 5677787
Q ss_pred HHHhhc
Q 038094 83 YENYLS 88 (203)
Q Consensus 83 Y~~~I~ 88 (203)
+-.++.
T Consensus 108 ~~~~~~ 113 (697)
T PF09726_consen 108 WVQYVW 113 (697)
T ss_pred HHHHhh
Confidence 777664
No 11
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.97 E-value=71 Score=28.03 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHHhcc---CcchHHHHHHHhhc----hh-hhhhhHHHHHH
Q 038094 30 QQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLVWLQLA---STDRARQLYENYLS----PF-LLRCQAKADQL 101 (203)
Q Consensus 30 ~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~KllfllWL~lP---~~~GA~~IY~~~I~----P~-l~~~E~~ID~~ 101 (203)
...++.-|+-.++-.+.+..+. -=+ -..+|....+|...- .++|.+.+|-.++. |. .++||..||..
T Consensus 125 ~a~~~~~~in~~l~~l~~ia~~----~d~-~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~ 199 (230)
T KOG1792|consen 125 LASSLRVEINQALSELRDIALG----RDL-KDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPY 199 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----ccH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHHHhHH
Confidence 4466666666666555554331 111 235677777776543 35788888876553 53 37999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 038094 102 SATTHAKFDQLRAITQ 117 (203)
Q Consensus 102 L~~~~~~~~~~~~~~~ 117 (203)
++.+.++.+.....++
T Consensus 200 ~~~~~~~~k~~~~~~~ 215 (230)
T KOG1792|consen 200 LGKVMEELKKHYRKFD 215 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887755544
No 12
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=44.75 E-value=1.8e+02 Score=24.09 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038094 30 QQKWLLYWAAYGTFSIAEVFA 50 (203)
Q Consensus 30 ~~~WL~YWiVya~~~llE~~~ 50 (203)
..+++.+|++-+...++-.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (199)
T PF10112_consen 4 IIRFIFRWILGVLIAAITFLV 24 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346777777665555544443
No 13
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=42.10 E-value=1.2e+02 Score=26.33 Aligned_cols=49 Identities=14% Similarity=-0.025 Sum_probs=27.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHhhHHHHHHH
Q 038094 90 FLLRCQAKADQLSATTHAKFDQLRAITQAKVDQLRAITLRPFLLTCQAKIDQL 142 (203)
Q Consensus 90 ~l~~~E~~ID~~L~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 142 (203)
-+.+|++++++.+..=+..++++..-.++ -|+.++....+-|+.+.+|-
T Consensus 27 kl~qyqkR~e~~le~Er~~Ar~lird~rK----drAlllLKkKryQE~Ll~qt 75 (209)
T KOG2910|consen 27 KLKQYQKRLEKQLEAERQLARDLIRDGRK----DRALLLLKKKRYQEELLTQT 75 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHHHHHH
Confidence 45567777777766655555555444333 34455555555555555443
No 14
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=42.06 E-value=1.8e+02 Score=25.66 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--hhhhchHH
Q 038094 32 KWLLYWAAYGTFSIAEVFADKFL--TWFSMYYP 62 (203)
Q Consensus 32 ~WL~YWiVya~~~llE~~~d~ll--~wiPfY~~ 62 (203)
-|+++|++..++..++.++...+ .|-|+.+.
T Consensus 20 laiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~ 52 (222)
T COG2928 20 LAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYF 52 (222)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhchhhcC
Confidence 47788999888999888876433 35455443
No 15
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=30.81 E-value=3e+02 Score=27.48 Aligned_cols=31 Identities=29% Similarity=0.568 Sum_probs=22.5
Q ss_pred hhhhhchHHHHHHHHHHHhccCcchHHHHHH
Q 038094 54 LTWFSMYYPLKFAFLVWLQLASTDRARQLYE 84 (203)
Q Consensus 54 l~wiPfY~~~KllfllWL~lP~~~GA~~IY~ 84 (203)
..|+|+|-.+-++|.-|+.+--.-||..+.-
T Consensus 144 aPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~ 174 (580)
T COG4618 144 APWMPLYLAVIFLFHPWLGLIALAGAIILVV 174 (580)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999777777777766665677776654
No 16
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.28 E-value=3.9e+02 Score=23.64 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhchHHHHHHHHH-HHhccCcchHHHHHHHhhchhhhhhhHHHHHHHHHHHHH
Q 038094 30 QQKWLLYWAAYGTFSIAEVFADKFLTWFSMYYPLKFAFLV-WLQLASTDRARQLYENYLSPFLLRCQAKADQLSATTHAK 108 (203)
Q Consensus 30 ~~~WL~YWiVya~~~llE~~~d~ll~wiPfY~~~Kllfll-WL~lP~~~GA~~IY~~~I~P~l~~~E~~ID~~L~~~~~~ 108 (203)
...++.||++.+++ .+++++|......++..+ |++.+.......+-.++=.=+-.+.+++++++.......
T Consensus 19 ~~~~~~~~l~~~l~--------~~~~~LP~~~~~~~~~~l~~~~~~~~~rr~v~~~NL~~afPe~s~~e~~~i~~~~~~~ 90 (308)
T PRK06553 19 FAGWLVAQLVFGLL--------GLLRLFPADKAINFFGRLARLIGPLLPRHRVALDNLRAAFPEKSEAEIEAIALGMWDN 90 (308)
T ss_pred HHHHHHHHHHHHHH--------HHHHHCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45555666554433 346788988776655443 333332122233333322222234455555555554444
No 17
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.97 E-value=40 Score=31.90 Aligned_cols=17 Identities=18% Similarity=0.636 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038094 30 QQKWLLYWAAYGTFSIA 46 (203)
Q Consensus 30 ~~~WL~YWiVya~~~ll 46 (203)
-+.|+.||++-++-.+=
T Consensus 98 SR~Wm~YWil~sl~lL~ 114 (423)
T KOG0365|consen 98 SRPWMCYWILNSLALLD 114 (423)
T ss_pred CcchhHHHHHHHHHHhc
Confidence 47999999998876553
No 18
>PF14423 Imm5: Immunity protein Imm5
Probab=29.61 E-value=1.1e+02 Score=26.18 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=21.5
Q ss_pred CCcccccccccccCccccCCCchHHHHhh
Q 038094 163 EDTFFTSSKILRGGVLKLDPNKPEVRNAV 191 (203)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (203)
+++|..|++-+-|+--......+|.||+.
T Consensus 142 d~df~~a~a~sGg~p~~~~~~~~e~Rr~f 170 (183)
T PF14423_consen 142 DPDFIAAIAYSGGNPWVAETGDVEKRREF 170 (183)
T ss_pred ChHHHHHHHHhCCCccccccCCHHHHHHH
Confidence 66777788877776333888889999873
No 19
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=27.47 E-value=77 Score=23.98 Aligned_cols=58 Identities=28% Similarity=0.261 Sum_probs=33.8
Q ss_pred HHHHHHHhhhhhhhhhhhccccccCCCccccc--ccccccCccccC-CCchHHHHhhhhccCC
Q 038094 138 KIDQLRAIEDMVGHINSIKAEIKCGEDTFFTS--SKILRGGVLKLD-PNKPEVRNAVEDLDGI 197 (203)
Q Consensus 138 ~~~~~~~~~d~~~~i~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 197 (203)
...||..|=+++..++-+.-++- +|++.+. ++..|-.+.+.. .....++||=+..||.
T Consensus 27 ~~~~l~~Il~~veql~evD~~~v--ep~~~~~~~~~~lReD~~~~~~~~~~~l~nap~~~dg~ 87 (96)
T COG0721 27 FATQLEDILGYVEQLNEVDTEGV--EPTTHPLEVSNVLREDEVTEGLDREELLANAPESEDGF 87 (96)
T ss_pred HHHHHHHHHHHHHHHHhccccCC--CcccccccccccccCCCCCCCcCHHHHHhcCCcccCCe
Confidence 33444444444444444444444 5666544 455676666666 5556788888888884
No 20
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.24 E-value=3.4e+02 Score=28.59 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=42.2
Q ss_pred hccCcchHHHHHHHhhchhhhhh------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHhHHHhhHHH
Q 038094 72 QLASTDRARQLYENYLSPFLLRC------QAKADQLSATT-------HAKFDQLRAITQAKVDQLRAITLRPFLLTCQAK 138 (203)
Q Consensus 72 ~lP~~~GA~~IY~~~I~P~l~~~------E~~ID~~L~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 138 (203)
++|.-.|..||-+++||.-+..- ++-+.+++..+ +..+++..++.++.++.=.+.+..++-+|.+..
T Consensus 294 v~PSNegrGYvlRriiRRa~R~~~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~ 373 (879)
T COG0013 294 VLPSNEGRGYVLRRIIRRALRHGKLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLL 373 (879)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999998655321 22222222222 223333345566666666666666666666555
Q ss_pred HHHHHH
Q 038094 139 IDQLRA 144 (203)
Q Consensus 139 ~~~~~~ 144 (203)
..-+..
T Consensus 374 ~~~~~~ 379 (879)
T COG0013 374 EKELAK 379 (879)
T ss_pred HHHHHh
Confidence 544443
No 21
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.00 E-value=1.4e+02 Score=25.88 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=8.5
Q ss_pred CCCchHHHHhhhhcc
Q 038094 181 DPNKPEVRNAVEDLD 195 (203)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (203)
..++|+++..++-++
T Consensus 272 ~~~~~~l~~~l~~~p 286 (291)
T TIGR00996 272 VDYHPELEQLLHLLP 286 (291)
T ss_pred HhcchhHHHHHHhcc
Confidence 346666666655443
No 22
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=23.92 E-value=45 Score=25.48 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=27.7
Q ss_pred CCCcccccc-cccccCccccC-----CCchHHHHhhhhc
Q 038094 162 GEDTFFTSS-KILRGGVLKLD-----PNKPEVRNAVEDL 194 (203)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~ 194 (203)
.=|.|+-|+ .+|.|..+.++ |+-.|+++|+++|
T Consensus 6 lwp~YfDs~~srs~GRrvpk~laV~~P~~~ei~~a~~~L 44 (93)
T COG1400 6 LWPAYFDSDLSRSEGRRVPKELAVENPSLEEIAEALREL 44 (93)
T ss_pred EeehhhcCccChhhccccchhhcccCCCHHHHHHHHHHc
Confidence 357788888 78999998876 7888999999987
No 23
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.68 E-value=3.1e+02 Score=21.80 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhHHHhhHHHHHHHHH
Q 038094 96 AKADQLSATTHAKFDQLRAI-TQAKVDQLRAITLRPFLLTCQAKIDQLRA 144 (203)
Q Consensus 96 ~~ID~~L~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 144 (203)
-.||+.+.++-+.++..+.| .+..++..|+.+ +.-+.++++|++
T Consensus 44 vaIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI-----~eL~er~~~Le~ 88 (123)
T KOG4797|consen 44 VAIDNKIEQAMDLVKTHLMFAVREEVEVLKEQI-----RELEERNSALER 88 (123)
T ss_pred EeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 36888888888888776444 777777766654 444556666665
No 24
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=23.03 E-value=4.1e+02 Score=21.49 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=25.8
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038094 87 LSPFLLRCQAKADQLSATTHAKFDQLRAITQAKVDQLR 124 (203)
Q Consensus 87 I~P~l~~~E~~ID~~L~~~~~~~~~~~~~~~~~i~~~~ 124 (203)
|.-+|.++++.+|+-+..++..+.++-...+.+-.+.+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~ 60 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVK 60 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45577888888888888888877776544444444333
No 25
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=21.61 E-value=46 Score=31.00 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhccccccC---CCcccccccccccCccccCCCchHHHHhhhhccCCC
Q 038094 134 TCQAKIDQLRAIEDMVGHINSIKAEIKCG---EDTFFTSSKILRGGVLKLDPNKPEVRNAVEDLDGIT 198 (203)
Q Consensus 134 ~~~~~~~~~~~~~d~~~~i~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
.+++-++.|+-++||. .|.|| .-.++.+..+--=|-.+.+.||.|..|.+-|||=+.
T Consensus 86 r~~~dindl~~l~dlG--------sGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~ 145 (391)
T KOG0983|consen 86 RYQADINDLENLGDLG--------SGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVL 145 (391)
T ss_pred ccccChHHhhhHHhhc--------CCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHh
Confidence 3466677777777775 68888 345555555555566788999999999999998653
No 26
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.61 E-value=2e+02 Score=23.04 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=4.8
Q ss_pred hHHHHhhhhcc
Q 038094 185 PEVRNAVEDLD 195 (203)
Q Consensus 185 ~~~~~~~~~~~ 195 (203)
+++..+|++|+
T Consensus 106 ~~v~~~V~~Le 116 (126)
T PF07889_consen 106 DSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 27
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=21.20 E-value=52 Score=24.92 Aligned_cols=14 Identities=21% Similarity=0.785 Sum_probs=11.1
Q ss_pred HHHHHhhchhhhhh
Q 038094 81 QLYENYLSPFLLRC 94 (203)
Q Consensus 81 ~IY~~~I~P~l~~~ 94 (203)
+||++||.|++.+.
T Consensus 13 wIykkFlqP~i~~~ 26 (88)
T PF14975_consen 13 WIYKKFLQPYIYPF 26 (88)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999987654
No 28
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.19 E-value=1.3e+02 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred chHHHHHHHhhchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038094 77 DRARQLYENYLSPFLLRCQAKADQLSATTHAKFDQLRAI 115 (203)
Q Consensus 77 ~GA~~IY~~~I~P~l~~~E~~ID~~L~~~~~~~~~~~~~ 115 (203)
.|+.|+|++.-=--=.|-..--.++.+++.++++-+++.
T Consensus 56 Yg~lYlYERLtWT~~AKER~fK~Qfv~hAt~KLr~iv~~ 94 (171)
T PF04799_consen 56 YGGLYLYERLTWTNKAKERAFKRQFVDHATEKLRLIVSF 94 (171)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999998632222333344456666666666655444
Done!