Query 038094
Match_columns 203
No_of_seqs 155 out of 654
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m1j_B Fibrinogen beta chain; 50.0 59 0.002 30.1 8.3 28 88-115 88-115 (464)
2 3ghg_C Fibrinogen gamma chain; 40.8 33 0.0011 31.3 5.1 27 87-113 25-51 (411)
3 1zw0_A Type III secretion prot 36.7 1E+02 0.0035 21.2 6.5 53 108-160 13-66 (66)
4 3iv1_A Tumor susceptibility ge 29.0 1.5E+02 0.0052 20.9 6.1 55 100-162 7-61 (78)
5 4hkr_A Calcium release-activat 28.0 2.6E+02 0.0088 23.3 8.0 31 78-109 164-194 (214)
6 3ghg_A Fibrinogen alpha chain; 27.2 1.4E+02 0.0047 28.4 6.8 26 88-113 52-77 (562)
7 3ghg_B Fibrinogen beta chain; 26.2 1.6E+02 0.0054 27.3 7.0 29 87-115 82-110 (461)
8 3ghg_A Fibrinogen alpha chain; 21.8 1.7E+02 0.0057 27.8 6.3 47 109-160 108-155 (562)
9 3trt_A Vimentin; cytoskeleton, 20.4 2E+02 0.0068 19.2 6.5 12 145-156 65-76 (77)
10 3vhl_A Dedicator of cytokinesi 19.9 4.1E+02 0.014 22.5 9.3 73 70-144 201-274 (288)
No 1
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.02 E-value=59 Score=30.12 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=19.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038094 88 SPFLLRCQAKADQLSATTHAKFDQLRAI 115 (203)
Q Consensus 88 ~P~l~~~E~~ID~~L~~~~~~~~~~~~~ 115 (203)
.=+|.++|..||.-+.++++.+.++...
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~ 115 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDT 115 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhh
Confidence 3355688888888888888877776443
No 2
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=40.77 E-value=33 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=19.7
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHH
Q 038094 87 LSPFLLRCQAKADQLSATTHAKFDQLR 113 (203)
Q Consensus 87 I~P~l~~~E~~ID~~L~~~~~~~~~~~ 113 (203)
|+-+|.++|+.+|+-|..++..+.++.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~is 51 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVE 51 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 445677888888888887777776663
No 3
>1zw0_A Type III secretion protein; chaperone, translocation, export; 1.80A {Yersinia pestis} PDB: 2p58_A
Probab=36.71 E-value=1e+02 Score=21.20 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-HhHHHhhHHHHHHHHHhhhhhhhhhhhccccc
Q 038094 108 KFDQLRAITQAKVDQLRAITL-RPFLLTCQAKIDQLRAIEDMVGHINSIKAEIK 160 (203)
Q Consensus 108 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~i~~i~~~~~ 160 (203)
.+.++...+.+|..-.|.-++ +..-+.-|....|-++++-..++||.+++|+|
T Consensus 13 ~~~~i~~~l~qAl~~vKRqL~~G~~pqqYQ~~q~q~~A~eaal~Iie~~~~~~~ 66 (66)
T 1zw0_A 13 TVRSITMQLEMALTKLKKDMMRGGDAKQYQVWQRESKALESAIAIIHYVAGDLK 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 344444444444444444433 33334447777777789999999999999875
No 4
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=29.02 E-value=1.5e+02 Score=20.87 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHhhHHHHHHHHHhhhhhhhhhhhccccccC
Q 038094 100 QLSATTHAKFDQLRAITQAKVDQLRAITLRPFLLTCQAKIDQLRAIEDMVGHINSIKAEIKCG 162 (203)
Q Consensus 100 ~~L~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~i~~~~~~~ 162 (203)
.+=+.++.++++.+.-.+.. +.++-++++-+.++=++|++|+...++=.++...+
T Consensus 7 AVeDKLRrrl~E~~~q~qaE--------l~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~n 61 (78)
T 3iv1_A 7 AVSDKLRWRMKEEMDRAQAE--------LNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKN 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555554444433 45566788889999999999998887776665543
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=28.02 E-value=2.6e+02 Score=23.30 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=19.8
Q ss_pred hHHHHHHHhhchhhhhhhHHHHHHHHHHHHHH
Q 038094 78 RARQLYENYLSPFLLRCQAKADQLSATTHAKF 109 (203)
Q Consensus 78 GA~~IY~~~I~P~l~~~E~~ID~~L~~~~~~~ 109 (203)
-|...|++.+..-...+.+.|++ ++..++.+
T Consensus 164 Fa~hFYrsL~~hk~e~~~~~i~e-l~~~~~~l 194 (214)
T 4hkr_A 164 FAIHFYRSLVSHKYEVTVSGIRE-LEMLKEQM 194 (214)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 35667777777777777777766 44444443
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.20 E-value=1.4e+02 Score=28.39 Aligned_cols=26 Identities=0% Similarity=-0.065 Sum_probs=17.2
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHH
Q 038094 88 SPFLLRCQAKADQLSATTHAKFDQLR 113 (203)
Q Consensus 88 ~P~l~~~E~~ID~~L~~~~~~~~~~~ 113 (203)
+-.|.+.|..+.+.|+.+++.+.++-
T Consensus 52 QglLdkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHH
Confidence 34566677777777777777666653
No 7
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.17 E-value=1.6e+02 Score=27.32 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=22.3
Q ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 038094 87 LSPFLLRCQAKADQLSATTHAKFDQLRAI 115 (203)
Q Consensus 87 I~P~l~~~E~~ID~~L~~~~~~~~~~~~~ 115 (203)
|+-+|.++|..+|+-|..++..+.++...
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~ 110 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQT 110 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhh
Confidence 45578888999998888888887776443
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.77 E-value=1.7e+02 Score=27.83 Aligned_cols=47 Identities=9% Similarity=0.327 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHhhHHHHHHHHH-hhhhhhhhhhhccccc
Q 038094 109 FDQLRAITQAKVDQLRAITLRPFLLTCQAKIDQLRA-IEDMVGHINSIKAEIK 160 (203)
Q Consensus 109 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~i~~i~~~~~ 160 (203)
++++-+-+++-|.|++..+-..+ .++..||. |.|++.+|-.++-||+
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQl-----snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKV-----QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345566666666653333 33444554 6666666666655543
No 9
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.36 E-value=2e+02 Score=19.17 Aligned_cols=12 Identities=8% Similarity=0.484 Sum_probs=7.0
Q ss_pred hhhhhhhhhhhc
Q 038094 145 IEDMVGHINSIK 156 (203)
Q Consensus 145 ~~d~~~~i~~i~ 156 (203)
++.+-.++++++
T Consensus 65 iq~L~~el~slk 76 (77)
T 3trt_A 65 VQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 666666665554
No 10
>3vhl_A Dedicator of cytokinesis protein 8; signal transduction, guanine nucleotide exchang factor, GTPA signaling protein; 2.08A {Mus musculus}
Probab=19.85 E-value=4.1e+02 Score=22.53 Aligned_cols=73 Identities=10% Similarity=-0.053 Sum_probs=47.7
Q ss_pred HHhccCcchHHHHH-HHhhchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHhhHHHHHHHHH
Q 038094 70 WLQLASTDRARQLY-ENYLSPFLLRCQAKADQLSATTHAKFDQLRAITQAKVDQLRAITLRPFLLTCQAKIDQLRA 144 (203)
Q Consensus 70 WL~lP~~~GA~~IY-~~~I~P~l~~~E~~ID~~L~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 144 (203)
-.+.|..+|...-| +.|+.+.- .+ +...+.+..+++.+.+.+.....+++..+..+-.....=|+.+.++-+.
T Consensus 201 G~Vd~~VngG~~~y~~~Fl~~~~-~~-~~~~~~v~~Lk~~~~~~~~~l~~~L~lh~~li~~~~~~~h~~L~~~F~~ 274 (288)
T 3vhl_A 201 GSVGATVNQGPLEVAQVFLAEIP-AD-PKLYRHHNKLRLCFKEFIMRCGEAVEKNRRLITAEQREYQQELKKNYNK 274 (288)
T ss_dssp HHHCCSSSCCHHHHHHHHTSSCC-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred eEeccccccCHHHHHHHHcCCcc-cC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 35677788888888 77777621 12 2223456777777777788888888888887755544555555555544
Done!