Query 038094
Match_columns 203
No_of_seqs 155 out of 654
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 12:37:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038094.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038094hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1st6a6 a.24.9.1 (A:647-718) V 27.4 73 0.0053 20.4 5.9 51 105-155 15-70 (72)
2 d1h6ga1 a.24.9.1 (A:377-507) a 23.3 1.1E+02 0.0081 21.4 6.6 47 109-155 78-129 (131)
3 d1riqa1 a.203.1.1 (A:237-457) 22.1 78 0.0057 24.1 5.9 20 72-91 48-67 (221)
4 d1st6a7 a.24.9.1 (A:719-855) V 21.4 32 0.0024 24.6 3.1 53 132-191 62-117 (137)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 14.5 37 0.0027 17.8 1.4 16 5-20 7-22 (27)
6 d2qamt1 d.12.1.1 (T:1-93) Ribo 12.4 55 0.004 21.8 2.3 21 179-199 35-55 (93)
7 d1nekd_ f.21.2.2 (D:) Succinat 12.3 34 0.0025 23.2 1.1 33 58-90 53-85 (113)
8 d2zjrq1 d.12.1.1 (Q:2-94) Ribo 11.7 37 0.0027 22.8 1.1 21 179-199 29-49 (93)
9 d1iiea_ a.109.1.1 (A:) Class I 11.4 61 0.0044 21.2 2.1 14 29-42 47-60 (75)
10 d1h6ga2 a.24.9.1 (A:508-631) a 10.6 74 0.0054 22.5 2.5 19 132-150 62-81 (124)
No 1
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.42 E-value=73 Score=20.42 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHhhHHHHHHHHH-----hhhhhhhhhhh
Q 038094 105 THAKFDQLRAITQAKVDQLRAITLRPFLLTCQAKIDQLRA-----IEDMVGHINSI 155 (203)
Q Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~i~~i 155 (203)
++...+++-.+.-+.|..++.....|-.|..+-..+.++. +.+|+..++.|
T Consensus 15 i~~aa~qle~L~PQVi~AariL~~~P~sK~a~En~e~~~~~W~~~v~~l~~~vDei 70 (72)
T d1st6a6 15 IQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEA 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455666666888888888777766666666666655 77777776655
No 2
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.34 E-value=1.1e+02 Score=21.37 Aligned_cols=47 Identities=17% Similarity=0.308 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHhhHHHHHHHHH-----hhhhhhhhhhh
Q 038094 109 FDQLRAITQAKVDQLRAITLRPFLLTCQAKIDQLRA-----IEDMVGHINSI 155 (203)
Q Consensus 109 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~i~~i 155 (203)
..++-.+.-+-|+.|+.....|-.|..+..-+.++. +++|++.++.|
T Consensus 78 a~~l~~L~PQVi~Aar~l~~~P~sk~a~en~e~~~~~W~~~v~~L~~~vd~i 129 (131)
T d1h6ga1 78 ASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVDDI 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566677777777766666655555555554 77777777665
No 3
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=22.08 E-value=78 Score=24.14 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=17.1
Q ss_pred hccCcchHHHHHHHhhchhh
Q 038094 72 QLASTDRARQLYENYLSPFL 91 (203)
Q Consensus 72 ~lP~~~GA~~IY~~~I~P~l 91 (203)
+.|.-.|.+|+-+++++..+
T Consensus 48 v~PsN~grGYvlRriiRRa~ 67 (221)
T d1riqa1 48 VIPSNEGRGYVIRRILRRAM 67 (221)
T ss_dssp CCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHH
Confidence 57888999999999998766
No 4
>d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.40 E-value=32 Score=24.55 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHhhHHHHHHHHH-hhhhhhhhhhhccccccC--CCcccccccccccCccccCCCchHHHHhh
Q 038094 132 LLTCQAKIDQLRA-IEDMVGHINSIKAEIKCG--EDTFFTSSKILRGGVLKLDPNKPEVRNAV 191 (203)
Q Consensus 132 ~~~~~~~~~~~~~-~~d~~~~i~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (203)
..+=-.++.+|+. ++.|+...+.+.....+. +..|..++....+.|- +||+|+
T Consensus 62 ~~~V~~Avk~La~~~~~~v~~ak~va~np~d~~~q~~~~daa~~l~~aV~-------~Vr~Al 117 (137)
T d1st6a7 62 REAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVA-------KVREAF 117 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCCTTTTTHHHHTTTTTTHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4444566777776 888998887777666655 4567777777777664 456666
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=14.53 E-value=37 Score=17.84 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=12.0
Q ss_pred hHhHHHhHhhHHHHHH
Q 038094 5 LRCSVGVALPVYSTFK 20 (203)
Q Consensus 5 l~~~ig~lyPaY~S~k 20 (203)
...+.|..|.||+.||
T Consensus 7 ~~tl~glf~aayqqyk 22 (27)
T d2e74g1 7 FATLGGLFYAAYQQYK 22 (27)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456788888988876
No 6
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}
Probab=12.45 E-value=55 Score=21.80 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.6
Q ss_pred ccCCCchHHHHhhhhccCCCC
Q 038094 179 KLDPNKPEVRNAVEDLDGITS 199 (203)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~ 199 (203)
..+-||+++++|||.+=|+.-
T Consensus 35 ~~~AtK~eIK~ave~~f~VkV 55 (93)
T d2qamt1 35 AKDATKAEIKAAVQKLFEVEV 55 (93)
T ss_dssp CSSCCSHHHHHHHHHTTCCCC
T ss_pred CCCCCHHHHHHHHHHHhCCcc
Confidence 457899999999999988654
No 7
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=12.27 E-value=34 Score=23.21 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=20.5
Q ss_pred hchHHHHHHHHHHHhccCcchHHHHHHHhhchh
Q 038094 58 SMYYPLKFAFLVWLQLASTDRARQLYENYLSPF 90 (203)
Q Consensus 58 PfY~~~KllfllWL~lP~~~GA~~IY~~~I~P~ 90 (203)
|+-..+=+++++-+......|-..+-+.|++|.
T Consensus 53 ~~~~il~~l~l~~~~~H~~lGl~~IieDYi~~~ 85 (113)
T d1nekd_ 53 AFTKVFTLLALFSILIHAWIGMWQVLTDYVKPL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhhhHHHhcCCh
Confidence 444444445555555555678888888888773
No 8
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}
Probab=11.69 E-value=37 Score=22.78 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=17.1
Q ss_pred ccCCCchHHHHhhhhccCCCC
Q 038094 179 KLDPNKPEVRNAVEDLDGITS 199 (203)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~ 199 (203)
..+.||+++++|||.+=|+.-
T Consensus 29 ~~~atK~~Ik~ave~lf~VkV 49 (93)
T d2zjrq1 29 SPKATKTEIKDAIQQAFGVRV 49 (93)
T ss_dssp CSSCTHHHHHHHHHHHHCCCC
T ss_pred eCCCCHHHHHHHHHHHcCCCe
Confidence 356899999999999877653
No 9
>d1iiea_ a.109.1.1 (A:) Class II MHC-associated invariant chain ectoplasmic trimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=61 Score=21.16 Aligned_cols=14 Identities=14% Similarity=0.612 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH
Q 038094 29 EQQKWLLYWAAYGT 42 (203)
Q Consensus 29 ~~~~WL~YWiVya~ 42 (203)
....|+.||.+|-+
T Consensus 47 ~FEsWM~~WLlFeM 60 (75)
T d1iiea_ 47 VFESWMHHWLLFEM 60 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999998743
No 10
>d1h6ga2 a.24.9.1 (A:508-631) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.57 E-value=74 Score=22.46 Aligned_cols=19 Identities=5% Similarity=-0.111 Sum_probs=11.1
Q ss_pred HHhhHHHHHHHHH-hhhhhh
Q 038094 132 LLTCQAKIDQLRA-IEDMVG 150 (203)
Q Consensus 132 ~~~~~~~~~~~~~-~~d~~~ 150 (203)
..+=..++++|+. +..|+.
T Consensus 62 ~~~V~~av~~L~~~i~P~f~ 81 (124)
T d1h6ga2 62 TEKVLEATKLLSNTVMPRFT 81 (124)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 3444566677765 666654
Done!