Your job contains 1 sequence.
>038096
LVPSPKHSFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL
YIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMT
TTPLSSRKSRSDPVPMPVNGMEISHHSMRISVPRHYSSEEPPPPGVTLETNGYETHLNVT
NYDYSRRVFGATLDSISRSRSGHYNSSNRHY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 038096
(211 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2124670 - symbol:AT4G10110 species:3702 "Arabi... 456 3.5e-43 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 187 3.5e-17 2
WB|WBGene00004723 - symbol:sap-49 species:6239 "Caenorhab... 181 6.4e-16 2
UNIPROTKB|Q09442 - symbol:sap-49 "Splicing factor 3B subu... 181 6.4e-16 2
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 181 7.5e-16 2
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 183 7.6e-16 2
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 183 7.6e-16 2
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 183 7.6e-16 2
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 183 7.6e-16 2
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 183 7.6e-16 2
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 183 7.6e-16 2
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 191 1.2e-14 1
POMBASE|SPAC31G5.01 - symbol:sap49 "U2 snRNP-associated R... 167 4.5e-14 2
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 183 1.5e-13 1
UNIPROTKB|F5GY08 - symbol:RBM7 "RNA-binding protein 7" sp... 171 5.6e-13 1
UNIPROTKB|F5GXV8 - symbol:RBM7 "RNA-binding protein 7" sp... 161 6.4e-12 1
UNIPROTKB|I3L521 - symbol:I3L521 "Uncharacterized protein... 161 6.4e-12 1
SGD|S000005846 - symbol:HSH49 "U2-snRNP associated splici... 161 6.4e-12 1
UNIPROTKB|Q9Y580 - symbol:RBM7 "RNA-binding protein 7" sp... 161 9.0e-12 1
UNIPROTKB|J3KPD3 - symbol:RBM7 "RNA-binding protein 7" sp... 161 9.2e-12 1
UNIPROTKB|F1NGK7 - symbol:RBM7 "Uncharacterized protein" ... 160 1.5e-11 1
UNIPROTKB|P57052 - symbol:RBM11 "Splicing regulator RBM11... 158 2.6e-11 1
UNIPROTKB|Q3MHY8 - symbol:RBM7 "RNA-binding protein 7" sp... 155 4.2e-11 1
UNIPROTKB|F1SJV7 - symbol:LOC100522453 "Uncharacterized p... 155 4.5e-11 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 151 7.4e-11 1
UNIPROTKB|J9PA68 - symbol:RBM11 "Uncharacterized protein"... 152 2.1e-10 1
MGI|MGI:2447622 - symbol:Rbm11 "RNA binding motif protein... 152 2.1e-10 1
UNIPROTKB|E2QWQ0 - symbol:RBM7 "Uncharacterized protein" ... 153 2.2e-10 1
UNIPROTKB|G4NH06 - symbol:MGG_03973 "Splicing factor 3B s... 154 4.2e-10 1
RGD|1305195 - symbol:Rbm11 "RNA binding motif protein 11"... 151 4.4e-10 1
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 142 6.6e-10 1
UNIPROTKB|F1N209 - symbol:RBM11 "Uncharacterized protein"... 150 8.3e-10 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 138 1.8e-09 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 138 1.8e-09 1
GENEDB_PFALCIPARUM|PF14_0194 - symbol:PF14_0194 "spliceos... 152 1.9e-09 1
UNIPROTKB|Q8ILQ0 - symbol:PF14_0194 "Spliceosome-associat... 152 1.9e-09 1
ASPGD|ASPL0000007134 - symbol:AN6256 species:162425 "Emer... 137 2.2e-09 1
UNIPROTKB|I3L8K8 - symbol:I3L8K8 "Uncharacterized protein... 136 2.9e-09 1
MGI|MGI:1914260 - symbol:Rbm7 "RNA binding motif protein ... 148 2.9e-09 1
RGD|1308017 - symbol:Rbm7 "RNA binding motif protein 7" s... 147 4.2e-09 1
UNIPROTKB|E9PK21 - symbol:PPIE "Peptidyl-prolyl cis-trans... 139 1.7e-08 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 138 3.7e-08 2
UNIPROTKB|E1BUM0 - symbol:PPIE "Uncharacterized protein" ... 142 3.9e-08 1
CGD|CAL0006311 - symbol:orf19.2261 species:5476 "Candida ... 140 4.7e-08 1
RGD|1311411 - symbol:Ppie "peptidylprolyl isomerase E (cy... 139 6.0e-08 1
DICTYBASE|DDB_G0267714 - symbol:sf3b4 "splicing factor 3B... 141 8.0e-08 1
FB|FBgn0015818 - symbol:Spx "Spliceosomal protein on the ... 141 8.4e-08 1
UNIPROTKB|A4FV72 - symbol:PPIE "Peptidyl-prolyl cis-trans... 139 1.0e-07 1
UNIPROTKB|G3MZS9 - symbol:PPIE "Peptidyl-prolyl cis-trans... 139 1.0e-07 1
UNIPROTKB|E2QVB5 - symbol:PPIE "Uncharacterized protein" ... 139 1.0e-07 1
UNIPROTKB|Q9UNP9 - symbol:PPIE "Peptidyl-prolyl cis-trans... 139 1.0e-07 1
UNIPROTKB|F1SV03 - symbol:PPIE "Uncharacterized protein" ... 139 1.0e-07 1
MGI|MGI:1917118 - symbol:Ppie "peptidylprolyl isomerase E... 139 1.0e-07 1
ZFIN|ZDB-GENE-050417-167 - symbol:ppie "peptidylprolyl is... 139 1.0e-07 1
POMBASE|SPBC887.05c - symbol:cwf29 "RNA-binding protein C... 135 1.0e-07 1
ZFIN|ZDB-GENE-030131-6724 - symbol:zgc:77304 "zgc:77304" ... 137 1.1e-07 1
UNIPROTKB|Q5TGA3 - symbol:PPIE "Peptidyl-prolyl cis-trans... 139 1.1e-07 1
UNIPROTKB|J9P7U8 - symbol:PPIE "Uncharacterized protein" ... 139 1.4e-07 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 121 1.5e-07 1
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 117 4.6e-07 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 117 4.6e-07 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 117 4.6e-07 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 117 4.6e-07 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 117 4.6e-07 1
FB|FBgn0028382 - symbol:cyp33 "cyclophilin-33" species:72... 133 6.4e-07 1
FB|FBgn0031224 - symbol:CG11454 species:7227 "Drosophila ... 130 7.7e-07 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 133 8.3e-07 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 114 1.0e-06 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 114 1.0e-06 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 114 1.0e-06 1
WB|WBGene00001230 - symbol:eif-3.G species:6239 "Caenorha... 129 1.4e-06 1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 115 1.6e-06 2
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ... 115 1.6e-06 2
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 129 1.6e-06 2
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 129 1.6e-06 2
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 114 1.7e-06 2
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 114 2.1e-06 2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 114 2.1e-06 2
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 132 2.2e-06 1
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X... 115 2.5e-06 2
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 132 3.0e-06 1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 132 3.1e-06 1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 128 3.4e-06 2
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 121 3.8e-06 2
UNIPROTKB|F1MN26 - symbol:F1MN26 "Uncharacterized protein... 126 4.3e-06 2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 114 4.3e-06 2
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 129 4.4e-06 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 129 4.9e-06 2
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 128 5.9e-06 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 129 6.5e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 107 6.6e-06 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 128 7.5e-06 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 129 7.5e-06 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 129 7.8e-06 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 128 8.4e-06 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 128 8.5e-06 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 106 8.7e-06 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 106 8.7e-06 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 128 8.9e-06 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 128 8.9e-06 1
WARNING: Descriptions of 134 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2124670 [details] [associations]
symbol:AT4G10110 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K12831 UniGene:At.2966
UniGene:At.33652 EMBL:BT003697 EMBL:AK119126 IPI:IPI00532832
RefSeq:NP_192749.2 ProteinModelPortal:Q8GW25 SMR:Q8GW25
IntAct:Q8GW25 PaxDb:Q8GW25 PRIDE:Q8GW25 EnsemblPlants:AT4G10110.1
GeneID:826602 KEGG:ath:AT4G10110 TAIR:At4g10110 eggNOG:NOG276964
HOGENOM:HOG000238526 InParanoid:Q8GW25 OMA:SLEYSRR PhylomeDB:Q8GW25
ProtClustDB:CLSN2690837 Genevestigator:Q8GW25 Uniprot:Q8GW25
Length = 173
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 105/189 (55%), Positives = 129/189 (68%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 82
MSG SN C VYIGN+DE+V++RVLYDI+IQAGRV+DL+IPRDKETDKPKGFAF EYE+E
Sbjct: 1 MSGTSN--CTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETE 58
Query: 83 EIGHYAIKLFSGIVTLYNRTLRFALSGQDK---NAQNSSMTTTPLSSRKSRSDPVPMPVN 139
EI YA+KLFSG+V+LYNRTL+FA+SGQDK N+ NS P S SD +
Sbjct: 59 EIADYAVKLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLAFEHSDRAAY--H 116
Query: 140 GMEISHHSMRIS----VPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDS 195
+E S IS +P Y+ +EPPPPGV+ NG + +YSRRV G+ LDS
Sbjct: 117 HLE-RFSSQLISPPSPLPLDYT-QEPPPPGVS---NG-------ASLEYSRRVLGSALDS 164
Query: 196 ISRSRSGHY 204
I+ SR Y
Sbjct: 165 INHSRPRRY 173
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 187 (70.9 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 33/91 (36%), Positives = 60/91 (65%)
Query: 24 SGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
S N VY+G LD +++E +L+++ +QAG VV++Y+P+D+ T+ + + F+EY SEE
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 84 IGHYAIKLFSGIVTLYNRTLRFALSGQDKNA 114
YAIK+ + ++ L+ + +R + QDK +
Sbjct: 78 DADYAIKVLN-MIKLHGKPIRVNKASQDKKS 107
Score = 139 (54.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 48/158 (30%), Positives = 75/158 (47%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVV-DLYIPRDKETDKPKGFAFVEYESEEIGHYA 88
G N++IGNLD V+E++LYD G + + I RD +T +GF F+ Y+S E A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 89 IKLFSGIVTLYNR--TLRFALSGQDKNAQNSS-----MTTTPLSSRKSR-------SDPV 134
I+ +G L NR T+ +A K ++ + + T +++KSR P
Sbjct: 171 IESMTGQY-LSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS 229
Query: 135 PMP-VNGMEISHHSMRIS-VPRHYSSEEPPPPGVTLET 170
P VNG+ + + VP + PPPP +T
Sbjct: 230 SAPQVNGLPRPFANGSMQPVPIPAPRQPPPPPPQVYQT 267
Score = 47 (21.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 115 QNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
Q SM P+ R + P P P + +H PR PPPP
Sbjct: 277 QQHSMVPPPMQFRPPQGMPPPPPP---QFLNHQQGFGGPR-----PPPPP 318
Score = 38 (18.4 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 155 HYSSEEPPPP 164
H+ S PPPP
Sbjct: 351 HHMSMPPPPP 360
Score = 35 (17.4 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 154 RHYSSEEPPPP 164
+H+ PPPP
Sbjct: 349 QHHHMSMPPPP 359
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 181 (68.8 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N +Y+G LDEKV+E +L+++++QAG VV + +P+D+ T +GF FVE+ EE Y
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + ++ S +KN
Sbjct: 70 AIKILN-MIKLYGKPIKVNKASAHEKN 95
Score = 152 (58.6 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 47/173 (27%), Positives = 85/173 (49%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK N + G N+++GNLD +V+E++LYD G ++ + I RD ++ KGFAF
Sbjct: 87 NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSR-----KS 129
+ + S E A++ +G L NR T+ +A K ++ + L+++ K
Sbjct: 147 INFASFEASDTALEAMNGQF-LCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKD 205
Query: 130 R-----SD-PVPMPVNGMEISHHSMRISVPRHYSSEE--PPPPGVTLETNGYE 174
R SD P+ +P N ++ + ++ H + PPP + + +GY+
Sbjct: 206 RPHQVFSDVPLGVPAN-TPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQ 257
Score = 43 (20.2 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 116 NSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISVPRHYSSEEPPPPGV 166
+S M P R+ P P + GM R P PPPPG+
Sbjct: 292 SSGMWPPPPPPPPGRT-PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGM 341
Score = 40 (19.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 135 PMPVNGMEISHHSMRISVPRHYSSEEPPPPGVT 167
P P+ GM S + + Y PPPP VT
Sbjct: 245 PPPLMGMAQSGYQGQ------YPPVPPPPPSVT 271
Score = 36 (17.7 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 161 PPPPGVT 167
PPPPG T
Sbjct: 301 PPPPGRT 307
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 181 (68.8 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 34/87 (39%), Positives = 57/87 (65%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N +Y+G LDEKV+E +L+++++QAG VV + +P+D+ T +GF FVE+ EE Y
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + ++ S +KN
Sbjct: 70 AIKILN-MIKLYGKPIKVNKASAHEKN 95
Score = 152 (58.6 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 47/173 (27%), Positives = 85/173 (49%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK N + G N+++GNLD +V+E++LYD G ++ + I RD ++ KGFAF
Sbjct: 87 NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSR-----KS 129
+ + S E A++ +G L NR T+ +A K ++ + L+++ K
Sbjct: 147 INFASFEASDTALEAMNGQF-LCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKD 205
Query: 130 R-----SD-PVPMPVNGMEISHHSMRISVPRHYSSEE--PPPPGVTLETNGYE 174
R SD P+ +P N ++ + ++ H + PPP + + +GY+
Sbjct: 206 RPHQVFSDVPLGVPAN-TPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQ 257
Score = 43 (20.2 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 116 NSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISVPRHYSSEEPPPPGV 166
+S M P R+ P P + GM R P PPPPG+
Sbjct: 292 SSGMWPPPPPPPPGRT-PGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGM 341
Score = 40 (19.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 135 PMPVNGMEISHHSMRISVPRHYSSEEPPPPGVT 167
P P+ GM S + + Y PPPP VT
Sbjct: 245 PPPLMGMAQSGYQGQ------YPPVPPPPPSVT 271
Score = 36 (17.7 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 6/7 (85%), Positives = 6/7 (85%)
Query: 161 PPPPGVT 167
PPPPG T
Sbjct: 301 PPPPGRT 307
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 181 (68.8 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 144 (55.7 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 49/165 (29%), Positives = 79/165 (47%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRK--SRSD 132
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S++D
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQAD 205
Query: 133 ---------PVP--MPVNGMEISHHSMRI-SVPRHYSSEEPPPPG 165
P P MP M +M I +P + PPPG
Sbjct: 206 RPHQLFADAPPPPSMPTPVMTALGAAMPIPGMPPPGAFPPVPPPG 250
Score = 43 (20.2 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 123 PLSSRKSRSDPVP-MPVNGMEISHHSM---RISVPRHYSSEEPPPP 164
P S + R+ P P MP M + + P H PPPP
Sbjct: 314 PPGSNQPRAPPPPQMPPPPMGVPPRGPFGPPMGPPMHPGMRGPPPP 359
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 183 (69.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
Score = 42 (19.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 133 PVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
P PMP +GM M P Y+ PPP
Sbjct: 365 PGPMPPHGMRGPPPLMP---PHGYTGPPRPPP 393
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 183 (69.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
Score = 42 (19.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 133 PVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
P PMP +GM M P Y+ PPP
Sbjct: 365 PGPMPPHGMRGPPPLMP---PHGYTGPPRPPP 393
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 183 (69.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
Score = 42 (19.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 133 PVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
P PMP +GM M P Y+ PPP
Sbjct: 365 PGPMPPHGMRGPPPLMP---PHGYTGPPRPPP 393
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 183 (69.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
Score = 42 (19.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 133 PVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
P PMP +GM M P Y+ PPP
Sbjct: 365 PGPMPPHGMRGPPPLMP---PHGYTGPPRPPP 393
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 183 (69.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
Score = 42 (19.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 133 PVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
P PMP +GM M P Y+ PPP
Sbjct: 365 PGPMPPHGMRGPPPLMP---PHGYTGPPRPPP 393
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 183 (69.5 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
Score = 42 (19.8 bits), Expect = 7.6e-16, Sum P(2) = 7.6e-16
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 133 PVPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
P PMP +GM M P Y+ PPP
Sbjct: 365 PGPMPPHGMRGPPPLMP---PHGYTGPPRPPP 393
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 191 (72.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 33/80 (41%), Positives = 59/80 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VYIGNLDE+V++ +++++++QAGR+V++++P+D+ T +G+ FVE+ SEE YA ++
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 93 SGIVTLYNRTLRFALSGQDK 112
+GI LY + +R + DK
Sbjct: 75 NGI-RLYGKPIRVNKASADK 93
Score = 113 (44.8 bits), Expect = 0.00026, P = 0.00026
Identities = 30/114 (26%), Positives = 58/114 (50%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIGHYA 88
G +++GNLD V E+VLYD + G +V+L + RD +++ KG+ FV + E A
Sbjct: 100 GAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARD-DSNLSKGYGFVSFADFESSDAA 158
Query: 89 IKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGM 141
I +G + + ++++A K ++ L+++ +R V +P +
Sbjct: 159 IANMNGQYLMNKQVSVQYAYKKDGKGERHGDQAERMLAAQ-ARKHNVQVPTQAL 211
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 167 (63.8 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 31/85 (36%), Positives = 54/85 (63%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N +Y+GNLDEKV + +L+++ +QAG VV+++IPRD+ + GF F E+ E+ Y
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 88 AIKLFSGIVTLYNRTLRFALSGQDK 112
A ++ + V L+ + +R + QD+
Sbjct: 68 ACQILNQ-VKLFGKPIRVNRASQDR 91
Score = 134 (52.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 84
N+ G N+++GNLD V+ERVLYD G++V + RD E + KG+ FV Y+S E
Sbjct: 94 NTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFET 152
Query: 85 GHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMP 137
AI+ + L N+ T+ +A + K ++ + L++ ++ P
Sbjct: 153 ADAAIEAMNNQF-LMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTP 206
Score = 37 (18.1 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 161 PPPPGVTL 168
PPPPG+ +
Sbjct: 291 PPPPGMVM 298
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 183 (69.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 36/87 (41%), Positives = 59/87 (67%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLRF-ALSGQDKN 113
AIK+ + ++ LY + +R S +KN
Sbjct: 70 AIKIMN-MIKLYGKPIRVNKASAHNKN 95
Score = 142 (55.0 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 52/163 (31%), Positives = 84/163 (51%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRIS 151
+GI LY R ++ SG Q+ S++ P S P + E + +M S
Sbjct: 71 NGI-KLYGRPIKIQFRSGSSHAPQDVSLSY-P-QHHVGNSSPTSTSPSRYERTMDNMTSS 127
Query: 152 ---VPRHYSSEEP-PPPGVTLETNGYETHLNVTNYDYSRRVFG 190
+ R +SS E V + +N Y L+ ++Y R+ G
Sbjct: 128 AQIIQRSFSSPENFQRQAVVVSSNLYTDQLS---HEYGRKPAG 167
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 45/132 (34%), Positives = 72/132 (54%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRIS 151
+GI LY R ++ SG Q+ S++ P + S P + E + +M S
Sbjct: 71 NGI-KLYGRPIKIQFRSGSSHAPQDVSLSY-PQHHVGNSSPTSTSPSSRYERTMDNMTSS 128
Query: 152 ---VPRHYSSEE 160
+ R +SS E
Sbjct: 129 AQIIQRSFSSPE 140
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 45/132 (34%), Positives = 72/132 (54%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 9 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 67
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRIS 151
+GI LY R ++ SG Q+ S++ P + S P + E + +M S
Sbjct: 68 NGI-KLYGRPIKIQFRSGSSHAPQDVSLSY-PQHHVGNSSPTSTSPSSRYERTMDNMTSS 125
Query: 152 ---VPRHYSSEE 160
+ R +SS E
Sbjct: 126 AQIIQRSFSSPE 137
>SGD|S000005846 [details] [associations]
symbol:HSH49 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
Length = 213
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 36/114 (31%), Positives = 66/114 (57%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 82
M+ +++SG VY+GN+D ++ + LY++ IQ V+ + P+DK +G+AF+E+ ++
Sbjct: 1 MNYSADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQ 60
Query: 83 EIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPM 136
YAIK+ + V LY+R ++ + NS+ TT L S S+ +P+
Sbjct: 61 GDAQYAIKIMNNTVRLYDRLIKV------RQVTNSTGTTN-LPSNISKDMILPI 107
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 161 (61.7 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 45/132 (34%), Positives = 71/132 (53%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRIS 151
+GI LY R ++ SG Q+ S++ P S P + E + +M S
Sbjct: 71 NGI-KLYGRPIKIQFRSGSSHAPQDVSLSY-P-QHHVGNSSPTSTSPSRYERTMDNMTSS 127
Query: 152 ---VPRHYSSEE 160
+ R +SS E
Sbjct: 128 AQIIQRSFSSPE 139
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 161 (61.7 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 45/132 (34%), Positives = 72/132 (54%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRIS 151
+GI LY R ++ SG Q+ S++ P + S P + E + +M S
Sbjct: 71 NGI-KLYGRPIKIQFRSGSSHAPQDVSLSY-PQHHVGNSSPTSTSPSSRYERTMDNMTSS 128
Query: 152 ---VPRHYSSEE 160
+ R +SS E
Sbjct: 129 AQIIQRSFSSPE 140
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 160 (61.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 35/92 (38%), Positives = 56/92 (60%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNLD KV E +++++ QAG V+ + IP+DK+ K K FAFV ++ EE Y + L
Sbjct: 12 LFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKD-GKQKQFAFVSFKHEESVPYGMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTP 123
+GI LY R + SG +Q+S+ + P
Sbjct: 71 NGI-KLYGRPINIQFRSGSSHASQDSNSSCLP 101
>UNIPROTKB|P57052 [details] [associations]
symbol:RBM11 "Splicing regulator RBM11" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AP001660 EMBL:AK091331
EMBL:BC030196 EMBL:AY077695 EMBL:AF519623 IPI:IPI00025663
IPI:IPI00855847 RefSeq:NP_658983.3 UniGene:Hs.283828 PDB:2YWK
PDBsum:2YWK ProteinModelPortal:P57052 SMR:P57052 IntAct:P57052
MINT:MINT-1452231 DMDM:9978670 PRIDE:P57052 DNASU:54033
Ensembl:ENST00000400577 GeneID:54033 KEGG:hsa:54033 UCSC:uc002yjn.4
CTD:54033 GeneCards:GC21P015588 HGNC:HGNC:9897 HPA:HPA045885
neXtProt:NX_P57052 PharmGKB:PA34260 eggNOG:NOG245318
HOGENOM:HOG000146448 HOVERGEN:HBG061506 InParanoid:P57052
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 PhylomeDB:P57052
EvolutionaryTrace:P57052 GenomeRNAi:54033 NextBio:56316
ArrayExpress:P57052 Bgee:P57052 CleanEx:HS_RBM11
Genevestigator:P57052 GermOnline:ENSG00000185272 Uniprot:P57052
Length = 281
Score = 158 (60.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 40/129 (31%), Positives = 70/129 (54%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + I +D+E KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSM 148
+GI LY R + RF S + A S + ++S R++ + + + + + +
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRSSFPMQYFPI 129
Query: 149 R-ISVPRHY 156
S+P+ Y
Sbjct: 130 NNTSLPQEY 138
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 155 (59.6 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 39/128 (30%), Positives = 67/128 (52%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+GI L+ R ++ +A + P + S P ++ S + ++
Sbjct: 71 NGI-KLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSPTSTSPSRTVDNMTPSAQ-TI 128
Query: 153 PRHYSSEE 160
R +SS E
Sbjct: 129 QRSFSSSE 136
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 155 (59.6 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 34/89 (38%), Positives = 56/89 (62%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMT 120
+GI L+ R ++ SG +Q S++
Sbjct: 71 NGI-KLFGRPIKIQFRSGSSHASQEVSLS 98
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLR 104
+GI LY R ++
Sbjct: 71 NGI-KLYGRPIK 81
>UNIPROTKB|J9PA68 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:54033
OMA:YRFGSSR GeneTree:ENSGT00690000102191 EMBL:AAEX03016434
RefSeq:XP_535558.1 ProteinModelPortal:J9PA68
Ensembl:ENSCAFT00000043040 GeneID:478383 KEGG:cfa:478383
Uniprot:J9PA68
Length = 238
Score = 152 (58.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 38/106 (35%), Positives = 59/106 (55%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + I +D+E KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKTFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSDPV 134
+GI LY R + RF S + A S ++S R++ V
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSSEPANQSFENCIKINSHSYRNEEV 115
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 152 (58.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + + +D++ KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRD-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
+GI LY R + RF S + A S + ++S R+D
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSSEPANQSFESCAKINSHSFRND 113
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 153 (58.9 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG VV + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSM 119
+GI L+ R ++ SG +Q+ ++
Sbjct: 71 NGI-KLFGRPIKIQFRSGSSHASQDVNL 97
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 154 (59.3 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+GNLDE+ E ++++++ Q G VV+L++P D+ + +G+ FVE+++ E Y
Sbjct: 9 NKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADY 68
Query: 88 AIKLFSGIVTLYNRTLRFALSGQDK 112
A + +GI ++ + +R + DK
Sbjct: 69 AARALNGI-RVFGKVIRVNKASADK 92
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 151 (58.2 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + + +D++ KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRD-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
+GI LY R + RF S + A S + ++S R+D
Sbjct: 71 NGI-RLYGRPINVQYRFGNSRSSEPANQSFESCAKINSHSFRND 113
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 44 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 103
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 104 INFASFDASDAAIEAMNGQY-LCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 159
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 150 (57.9 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + I +D+E KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
+GI LY R + RF S + A S + ++S R++
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSCEPANQSFESCVKINSHSYRNE 113
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYA 88
SG +VY+GN + E L + QAG V ++ I D+ET +P+GFAFVE+ E A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 89 IKLFSGIVTLYNRTLRFALSGQDKN 113
+ F+G V R LR L+ Q++N
Sbjct: 62 VDQFNG-VDFNGRALRVNLA-QNRN 84
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 34/85 (40%), Positives = 49/85 (57%)
Query: 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYA 88
SG +VY+GN + E L + QAG V ++ I D+ET +P+GFAFVE+ E A
Sbjct: 2 SGFSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 89 IKLFSGIVTLYNRTLRFALSGQDKN 113
+ F+G V R LR L+ Q++N
Sbjct: 62 VDQFNG-VDFNGRALRVNLA-QNRN 84
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 16 SRNKRQIMSG--NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKG 73
+++K Q +S N+ +YI NLD +V+E +L ++ +Q G V +++IPRDK G
Sbjct: 3 TQHKNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAG 62
Query: 74 FAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNA 114
+ FVEYE E YA + + + L+ + LR + QDK +
Sbjct: 63 YGFVEYEYEYECEYAANILN-MTKLFGKALRCNKATQDKRS 102
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/155 (25%), Positives = 79/155 (50%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAI 89
G N++IGNLD++V+E++L+DI G+++ + + R+ E D KG F+ Y++ E AI
Sbjct: 106 GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRN-EDDTSKGHGFISYDNFESSDLAI 164
Query: 90 KLFSGIVTLYNRT-LRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSM 148
+ + + + +A K ++ + +++ K+ + P+ N +++++
Sbjct: 165 ENMNNQFICNKKVHISYAFKKDSKGERHGTAAERFIAANKALN-LYPLNENN---NNNNV 220
Query: 149 RISVPRHYSSEEPPPPGVTLE-TNG-YETHLNVTN 181
S P S++ P TL TN Y + +TN
Sbjct: 221 NPS-PFTSSNDIPLTNNTTLNLTNNVYLNNTIITN 254
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/101 (34%), Positives = 58/101 (57%)
Query: 16 SRNKRQIMSG--NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKG 73
+++K Q +S N+ +YI NLD +V+E +L ++ +Q G V +++IPRDK G
Sbjct: 3 TQHKNQEISHIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAG 62
Query: 74 FAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNA 114
+ FVEYE E YA + + + L+ + LR + QDK +
Sbjct: 63 YGFVEYEYEYECEYAANILN-MTKLFGKALRCNKATQDKRS 102
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/155 (25%), Positives = 79/155 (50%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAI 89
G N++IGNLD++V+E++L+DI G+++ + + R+ E D KG F+ Y++ E AI
Sbjct: 106 GANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRN-EDDTSKGHGFISYDNFESSDLAI 164
Query: 90 KLFSGIVTLYNRT-LRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSM 148
+ + + + +A K ++ + +++ K+ + P+ N +++++
Sbjct: 165 ENMNNQFICNKKVHISYAFKKDSKGERHGTAAERFIAANKALN-LYPLNENN---NNNNV 220
Query: 149 RISVPRHYSSEEPPPPGVTLE-TNG-YETHLNVTN 181
S P S++ P TL TN Y + +TN
Sbjct: 221 NPS-PFTSSNDIPLTNNTTLNLTNNVYLNNTIITN 254
>ASPGD|ASPL0000007134 [details] [associations]
symbol:AN6256 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACD01000107 EMBL:BN001301
GO:GO:0016853 HOGENOM:HOG000276232 eggNOG:NOG331137
OrthoDB:EOG4TJ03G RefSeq:XP_663860.1 ProteinModelPortal:Q5AZM4
STRING:Q5AZM4 EnsemblFungi:CADANIAT00006735 GeneID:2871037
KEGG:ani:AN6256.2 OMA:TAVWEQE Uniprot:Q5AZM4
Length = 153
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRD---KETDKPKGFAFVEY 79
MS + C VY+G LD+ V+ + L + + G VVD+ +P+ D +GF +VE+
Sbjct: 1 MSEKTRLKCTVYVGGLDQAVSVQTLAEAFVPFGEVVDITLPKPDLPNSNDNHRGFGYVEF 60
Query: 80 ESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPL 124
+S E AI G LY RT++ A + K+A + T +
Sbjct: 61 DSPEDAKEAIDNMDGS-ELYGRTIKVAPAKPQKDANEGLGSKTAI 104
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 22 IMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
+ S + V++GNL+ +V E +LY++ +QAG + + I +D++ + PK F FV ++
Sbjct: 1 MFSAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGN-PKSFGFVCFKH 59
Query: 82 EEIGHYAIKLFSGIVTLYNRTL 103
E YAI L +GI LY R +
Sbjct: 60 PESVSYAIALLNGI-RLYGRPI 80
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 148 (57.2 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/89 (37%), Positives = 57/89 (64%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ K K FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMT 120
+GI L+ R ++ SG +Q++S++
Sbjct: 71 NGI-KLFGRPIKIQFRSGSSHASQDASVS 98
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 147 (56.8 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ K K FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMTTTP 123
+GI L+ R ++ SG +Q++S T+ P
Sbjct: 71 NGI-KLFGRPIKIQFRSGSSHLSQDAS-TSYP 100
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 139 (54.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 138 (53.6 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 47 LYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG-IVTLYNRTLRF 105
LY + + G+VVD++IPRD+ T +GFAFV Y+ ++ H A++ G +V T++F
Sbjct: 32 LYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Query: 106 ALSGQD-KNAQNSSMTTTPLSSRKSRS 131
A G + + + P SR+SRS
Sbjct: 92 AKYGPNAEKISKGRVVEPPPKSRRSRS 118
Score = 35 (17.4 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 194 DSISRSRSGHYNSSNRH 210
D RSRS Y+ RH
Sbjct: 157 DYRKRSRSRSYDRRERH 173
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 142 (55.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+E+VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 140 (54.3 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 29/99 (29%), Positives = 57/99 (57%)
Query: 20 RQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEY 79
R+ + + N ++Y GN+D +V E ++Y++ IQ G V + +P+D+ +G+ FVE+
Sbjct: 6 RKRLDSDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEF 65
Query: 80 ESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
++ Y +++ GI LY + L+ L D +Q+S+
Sbjct: 66 KNSADAKYTMEILRGI-RLYGKALK--LKRIDAKSQSST 101
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 139 (54.0 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 141 (54.7 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
++ C + I +LD V E +L ++ IQA VV ++IP+DK T + G A+VE++S
Sbjct: 10 NHEAC-LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAE 68
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDK 112
YA+K+ V L+N+ ++ +DK
Sbjct: 69 YALKVMK-FVRLFNKEIKIKKENKDK 93
Score = 123 (48.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 39/145 (26%), Positives = 71/145 (48%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIGHYA 88
G N++IGNLD V+ER+L+D + G ++ + RD E KGFAF+ ++S E A
Sbjct: 97 GANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDAA 155
Query: 89 IKLFSGIVTLYNRTLRFALSGQ-DKNAQNSSMTTTPLSSRKSRS--DPVPMPVNGMEISH 145
I+ + L N+ + + + D N ++ S +++ ++ + + S
Sbjct: 156 IEAMNSQF-LCNKPISVTYARKKDSNERHGSSAERIIAASRNTGYLNQQQQQQSSSTSST 214
Query: 146 HSMRISVPRHYSSEE--P-PPPGVT 167
++ S P+ ++ P PPP VT
Sbjct: 215 STISTSTPQQQQQQQSQPLPPPIVT 239
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 141 (54.7 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 44/154 (28%), Positives = 73/154 (47%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK N + G N++IGNLD +V+E++LYD G ++ I RD ET K K FAF
Sbjct: 106 NKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAF 165
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRK--SRSD 132
+ + S E A+ +G L NR ++ +A K ++ S L+++ + +D
Sbjct: 166 INFASFEASDAAMDAMNGQY-LCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHAD 224
Query: 133 -PVPMPVNG-MEISHHSMRISVPRHYSSEEPPPP 164
P + + ++ M +P + PPP
Sbjct: 225 RPHQLFADAPVQTMMPQMPGQIPAQMPGQMMPPP 258
Score = 96 (38.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 58 VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF-ALSGQDKN 113
V++++P+D+ T +G+ FVE+ SEE Y IK+ + ++ LY + +R S KN
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMN-MIKLYGKPIRVNKASAHQKN 114
Score = 77 (32.2 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRV 57
N +Y G LD+KV+E +L+++ +QAG V
Sbjct: 10 NQDATIYAGGLDDKVSETLLWELFVQAGPV 39
Score = 38 (18.4 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 134 VPMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
VP+ N M + + P + + PPPP
Sbjct: 267 VPVSNNNMGMLAPPPPVPQPAPFPATIPPPP 297
>UNIPROTKB|A4FV72 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002130 InterPro:IPR012677
InterPro:IPR016304 InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160
PIRSF:PIRSF001475 PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072
PROSITE:PS50102 SMART:SM00360 GO:GO:0006457 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 EMBL:BC123818 IPI:IPI00686175
RefSeq:NP_001091630.1 UniGene:Bt.21742 ProteinModelPortal:A4FV72
SMR:A4FV72 PRIDE:A4FV72 GeneID:787681 KEGG:bta:787681 CTD:10450
KO:K09564 NextBio:20928622 Uniprot:A4FV72
Length = 301
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>UNIPROTKB|G3MZS9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9913 "Bos taurus" [GO:0006457 "protein folding"
evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 UniGene:Bt.21742 OMA:AFIEFEL
EMBL:DAAA02009142 Ensembl:ENSBTAT00000063035 Uniprot:G3MZS9
Length = 301
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>UNIPROTKB|E2QVB5 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 EMBL:AAEX03009569
EMBL:AAEX03009570 RefSeq:XP_848739.1 Ensembl:ENSCAFT00000004892
GeneID:607232 KEGG:cfa:607232 NextBio:20892973 Uniprot:E2QVB5
Length = 301
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>UNIPROTKB|Q9UNP9 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=IMP] [GO:0016018 "cyclosporin A binding"
evidence=TAS] [GO:0000413 "protein peptidyl-prolyl isomerization"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0006355 GO:GO:0000166 EMBL:CH471059
EMBL:AL035404 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 EMBL:AL033527 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0016018 PDB:2KU7 PDBsum:2KU7
HOVERGEN:HBG001065 CTD:10450 KO:K09564 EMBL:AF104012 EMBL:AF104013
EMBL:AF042385 EMBL:AF042386 EMBL:AK313666 EMBL:AL049824
EMBL:BC004898 EMBL:BC008451 EMBL:BC107736 IPI:IPI00009316
IPI:IPI00220188 PIR:S66681 RefSeq:NP_006103.1 RefSeq:NP_982281.1
UniGene:Hs.524690 PDB:1ZMF PDB:2CQB PDB:2KYX PDB:2R99 PDB:3LPY
PDB:3MDF PDB:3UCH PDBsum:1ZMF PDBsum:2CQB PDBsum:2KYX PDBsum:2R99
PDBsum:3LPY PDBsum:3MDF PDBsum:3UCH ProteinModelPortal:Q9UNP9
SMR:Q9UNP9 IntAct:Q9UNP9 STRING:Q9UNP9 PhosphoSite:Q9UNP9
DMDM:13124097 PaxDb:Q9UNP9 PRIDE:Q9UNP9 DNASU:10450
Ensembl:ENST00000324379 Ensembl:ENST00000356511 GeneID:10450
KEGG:hsa:10450 UCSC:uc001cds.2 UCSC:uc001cdv.3
GeneCards:GC01P040157 HGNC:HGNC:9258 HPA:HPA020131 MIM:602435
neXtProt:NX_Q9UNP9 PharmGKB:PA33583 OrthoDB:EOG4STS55
PhylomeDB:Q9UNP9 ChiTaRS:PPIE EvolutionaryTrace:Q9UNP9
GenomeRNAi:10450 NextBio:39609 ArrayExpress:Q9UNP9 Bgee:Q9UNP9
CleanEx:HS_PPIE Genevestigator:Q9UNP9 GermOnline:ENSG00000084072
Uniprot:Q9UNP9
Length = 301
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>UNIPROTKB|F1SV03 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006457 "protein folding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 KO:K09564 OMA:AFIEFEL EMBL:CR956427
RefSeq:XP_003127865.1 Ensembl:ENSSSCT00000004060 GeneID:100516562
KEGG:ssc:100516562 Uniprot:F1SV03
Length = 301
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>MGI|MGI:1917118 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006457 "protein folding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0045070 "positive regulation of viral
genome replication" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1917118 GO:GO:0006457 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891
GO:GO:0000413 GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065
CTD:10450 KO:K09564 OMA:AFIEFEL OrthoDB:EOG4STS55 EMBL:AK008177
EMBL:BC045154 EMBL:AF182825 IPI:IPI00111343 RefSeq:NP_062362.1
UniGene:Mm.126873 ProteinModelPortal:Q9QZH3 SMR:Q9QZH3
STRING:Q9QZH3 PhosphoSite:Q9QZH3 REPRODUCTION-2DPAGE:IPI00111343
PaxDb:Q9QZH3 PRIDE:Q9QZH3 Ensembl:ENSMUST00000030404 GeneID:56031
KEGG:mmu:56031 UCSC:uc008uow.1 InParanoid:Q9QZH3 NextBio:311788
Bgee:Q9QZH3 CleanEx:MM_PPIE Genevestigator:Q9QZH3
GermOnline:ENSMUSG00000028651 Uniprot:Q9QZH3
Length = 301
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>ZFIN|ZDB-GENE-050417-167 [details] [associations]
symbol:ppie "peptidylprolyl isomerase E
(cyclophilin E)" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050417-167 GO:GO:0006457 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
HOVERGEN:HBG001065 CTD:10450 KO:K09564 OrthoDB:EOG4STS55
EMBL:BC093329 IPI:IPI00511584 RefSeq:NP_001017678.1
UniGene:Dr.79339 ProteinModelPortal:Q561T2 SMR:Q561T2 GeneID:550373
KEGG:dre:550373 InParanoid:Q561T2 NextBio:20879625 Uniprot:Q561T2
Length = 302
Score = 139 (54.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+E+VL+ I G + D+ IP D ET+K +GFAF+E+E E AI
Sbjct: 8 LYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R ++ + + SS
Sbjct: 68 NES-ELFGRTIRVNIAKPMRIKEGSS 92
>POMBASE|SPBC887.05c [details] [associations]
symbol:cwf29 "RNA-binding protein Cwf29" species:4896
"Schizosaccharomyces pombe" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC887.05c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0000245 GO:GO:0005686 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 HSSP:Q14103 PIR:T40730
RefSeq:NP_596479.1 ProteinModelPortal:O94290 IntAct:O94290
STRING:O94290 EnsemblFungi:SPBC887.05c.1 GeneID:2541212
KEGG:spo:SPBC887.05c OrthoDB:EOG441TN4 NextBio:20802324
Uniprot:O94290
Length = 217
Score = 135 (52.6 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 55/180 (30%), Positives = 81/180 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIGNLD +NE + + + G VD+ + RDKET K KGFAF++YE + A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRIS- 151
+ V L +R +R D A P K ++ VP+ +G +S ++ S
Sbjct: 93 TN-VKLLDRLVRV-----DHVASYK----VP-QKEKEPANLVPLGESGSSLSVSTINTSN 141
Query: 152 VPRH-YSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNSSNRH 210
+P H Y + TL + L+ DY R L S RS + SNRH
Sbjct: 142 LPDHDYKTIIQNEVEQTLSPKDEKDLLDPMR-DYIHREKRRKLKHESSDRSDK-SDSNRH 199
>ZFIN|ZDB-GENE-030131-6724 [details] [associations]
symbol:zgc:77304 "zgc:77304" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6724 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG009324 KO:K13188 HSSP:O08583
EMBL:BC049507 IPI:IPI00496411 RefSeq:NP_956219.1 UniGene:Dr.75468
ProteinModelPortal:Q7ZWA5 SMR:Q7ZWA5 STRING:Q7ZWA5 GeneID:334784
KEGG:dre:334784 NextBio:20810542 ArrayExpress:Q7ZWA5 Uniprot:Q7ZWA5
Length = 252
Score = 137 (53.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 36/101 (35%), Positives = 60/101 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNLD +V E V++++ +QAG ++ + IP++ E K K FAFV ++ E YA+ L
Sbjct: 11 LFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNE-GKSKLFAFVNFKHEVSVPYALNLL 69
Query: 93 SGIVTLYNRTL--RFA-----LSGQDK---NAQNSSMTTTP 123
+GI L+ R L +F ++ + K N+QN S TP
Sbjct: 70 NGI-RLHGRQLNIKFKTGSSHINQEGKSPANSQNPSPANTP 109
>UNIPROTKB|Q5TGA3 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 EMBL:AL035404
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL033527 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 HOVERGEN:HBG001065 CTD:10450
KO:K09564 OMA:AFIEFEL EMBL:AL049824 UniGene:Hs.524690 DNASU:10450
GeneID:10450 KEGG:hsa:10450 HGNC:HGNC:9258 ChiTaRS:PPIE
GenomeRNAi:10450 NextBio:39609 IPI:IPI00514173
RefSeq:NP_001181936.1 SMR:Q5TGA3 MINT:MINT-1475497 STRING:Q5TGA3
Ensembl:ENST00000372830 UCSC:uc001cdw.3 Uniprot:Q5TGA3
Length = 314
Score = 139 (54.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>UNIPROTKB|J9P7U8 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006457 "protein folding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 OMA:AFIEFEL EMBL:AAEX03009569
EMBL:AAEX03009570 Ensembl:ENSCAFT00000046678 Uniprot:J9P7U8
Length = 343
Score = 139 (54.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/86 (38%), Positives = 51/86 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSS 118
+ L+ RT+R L+ + + SS
Sbjct: 68 NES-ELFGRTIRVNLAKPMRIKEGSS 92
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 121 (47.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTPLSSRKSRS 131
V L R LR ++ G+ ++ +S P S +SRS
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPPRSRSRSRS 115
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 117 (46.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEY-ES 81
MS N N+ +++G +DE ++E+ LYDI G + ++ +P + T K +GFAFVEY E
Sbjct: 1 MSDN-NATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEV 59
Query: 82 EEIGH 86
++ H
Sbjct: 60 DDAKH 64
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 117 (46.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 23/66 (34%), Positives = 43/66 (65%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 93 SGIVTL 98
+G +T+
Sbjct: 70 NGKMTV 75
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 117 (46.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 36 GNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95
GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++ +G
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 96 VTLYNRTLRFALSGQDKNAQ 115
R LR + +KN +
Sbjct: 62 -EFSGRALRVDNAASEKNKE 80
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 117 (46.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 25/65 (38%), Positives = 41/65 (63%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEY-ES 81
MS N N+ +++G +DE ++E+ LYDI G + ++ +P + T K +GFAFVEY E
Sbjct: 1 MSDN-NATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEV 59
Query: 82 EEIGH 86
++ H
Sbjct: 60 DDAKH 64
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 117 (46.2 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIG- 85
++ G +VY+GN+ + E + + G V ++ I D+ET +P+GFAFVE+ SEE G
Sbjct: 2 ASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF-SEEAGA 60
Query: 86 HYAIKLFSGIVTLYNRTLR 104
A++ +G V R LR
Sbjct: 61 QRAVEQLNG-VAFNGRNLR 78
>FB|FBgn0028382 [details] [associations]
symbol:cyp33 "cyclophilin-33" species:7227 "Drosophila
melanogaster" [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=IEA;NAS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0006457 "protein folding" evidence=IEA;NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR016304
InterPro:IPR020892 Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475
PRINTS:PR00153 PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0006457 GO:GO:0006911
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 GO:GO:0003755
SUPFAM:SSF50891 GO:GO:0000413 GeneTree:ENSGT00690000101651
KO:K09564 EMBL:AF182826 EMBL:AY061421 RefSeq:NP_523773.1
UniGene:Dm.2854 ProteinModelPortal:Q9V3G3 SMR:Q9V3G3 DIP:DIP-21959N
IntAct:Q9V3G3 MINT:MINT-1643160 STRING:Q9V3G3 PaxDb:Q9V3G3
PRIDE:Q9V3G3 EnsemblMetazoa:FBtr0086945 GeneID:36984
KEGG:dme:Dmel_CG4886 UCSC:CG4886-RA CTD:36984 FlyBase:FBgn0028382
InParanoid:Q9V3G3 OMA:AFIEFEL OrthoDB:EOG4QV9TN PhylomeDB:Q9V3G3
GenomeRNAi:36984 NextBio:801358 Bgee:Q9V3G3 GermOnline:CG4886
Uniprot:Q9V3G3
Length = 300
Score = 133 (51.9 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
SN +Y+G L ++V ER+L + I G + D+ +P D E+ + +GFAF+EYE E
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 87 YAIKLFSGIVTLYNRTLRFALS 108
AI + L RT+R L+
Sbjct: 62 AAIDNMNDS-ELCGRTIRVNLA 82
>FB|FBgn0031224 [details] [associations]
symbol:CG11454 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 eggNOG:NOG273605 EMBL:BT021281
ProteinModelPortal:Q5BIE3 STRING:Q5BIE3 PaxDb:Q5BIE3 PRIDE:Q5BIE3
FlyBase:FBgn0031224 InParanoid:Q5BIE3 OrthoDB:EOG49ZW5B
ArrayExpress:Q5BIE3 Bgee:Q5BIE3 Uniprot:Q5BIE3
Length = 238
Score = 130 (50.8 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 37/147 (25%), Positives = 63/147 (42%)
Query: 5 PKHSFVPND----VVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL 60
P + F+PN+ +V + + ++ GNLDE+V E +LY++ +QAG + +
Sbjct: 40 PIYPFLPNENGDQLVGQLEDDDDEEEDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGV 99
Query: 61 YIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMT 120
IP D +P+ F FV Y+ +A+ L+ G+ + G+ A N S
Sbjct: 100 RIPTDNN-GRPRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIKQQGGKQLPAYNQSRL 158
Query: 121 TTPLSSRKSRSDPVPMPVNGMEISHHS 147
P P P+ S H+
Sbjct: 159 RNQFMMEAL---PQPSPLRHARHSLHN 182
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 133 (51.9 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 32/96 (33%), Positives = 50/96 (52%)
Query: 25 GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEI 84
GN S +V++GN+ V+E + I +AG V+ + + D+ET KPKG+ F+E+ +
Sbjct: 12 GNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQT 71
Query: 85 GHYAIKLFSGIVTLYNRTLRF--ALSGQDKNAQNSS 118
AI+ +G L R LR A G + SS
Sbjct: 72 AEVAIRNLNGY-ELSGRILRVDSAAGGMNMEEFGSS 106
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 60
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 114 (45.2 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 60
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 129 (50.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/86 (39%), Positives = 49/86 (56%)
Query: 20 RQIMSGNSNSG-CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVE 78
RQI S+ C V NL +++NE L D+ + GRV+ ++I RDK T PKGFAFV
Sbjct: 166 RQIDRNRSDENTCRVT--NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVT 223
Query: 79 YESEEIGHYAIKLFSGIVTLYNRTLR 104
+ES + AI + I +Y+ L+
Sbjct: 224 FESRDDAARAIAELNDI-RMYHMVLK 248
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 115 (45.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFES 58
Score = 55 (24.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 147 SMRISVPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNS 206
S R S + +S PP + G + + +Y SR +G + DS S SRS Y+S
Sbjct: 277 SYRDSYESYGNSRSAPPTRGPPPSYGGSSRYD--DYSSSRDGYGGSRDSYSSSRSDLYSS 334
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 161 PPPPGVTLETNGYETHLNVTN 181
PP G ++ GY + N+++
Sbjct: 119 PPSRGGYMDDGGYSMNFNMSS 139
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 115 (45.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFES 58
Score = 55 (24.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 147 SMRISVPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNS 206
S R S + +S PP + G + + +Y SR +G + DS S SRS Y+S
Sbjct: 277 SYRDSYESYGNSRSAPPTRGPPPSYGGSSRYD--DYSSSRDGYGGSRDSYSSSRSDLYSS 334
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 161 PPPPGVTLETNGYETHLNVTN 181
PP G ++ GY + N+++
Sbjct: 119 PPSRGGYMDDGGYSMNFNMSS 139
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 129 (50.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
Score = 43 (20.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 134 VPMPVNG-MEISHHSMRISVPRHYSSEEPPPPG 165
V MPV G + + M+IS PR P P G
Sbjct: 301 VGMPVVGPVPLERGQMQISDPRPPMPRGPMPSG 333
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 129 (50.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
Score = 43 (20.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 134 VPMPVNG-MEISHHSMRISVPRHYSSEEPPPPG 165
V MPV G + + M+IS PR P P G
Sbjct: 301 VGMPVVGPVPLERGQMQISDPRPPMPRGPMPSG 333
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 114 (45.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFES 58
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 181 NYDYSRRVFGATLDSISRSRSGHYNSSNR 209
+Y SR +G + DS S SRS Y+S +R
Sbjct: 312 DYSSSRDGYGGSRDSYSSSRSDLYSSCDR 340
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
Score = 55 (24.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 147 SMRISVPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNS 206
S R S + +S PP + G + + +Y SR +G + DS S SRS Y+S
Sbjct: 279 SYRDSYESYGNSRSAPPTRGPPPSYGGSSRYD--DYSSSRDGYGGSRDSYSSSRSDLYSS 336
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 161 PPPPGVTLETNGYETHLNVTN 181
PP G ++ GY + N+++
Sbjct: 121 PPSRGGHMDDGGYSMNFNMSS 141
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 114 (45.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
Score = 55 (24.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 147 SMRISVPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNS 206
S R S + +S PP + G + + +Y SR +G + DS S SRS Y+S
Sbjct: 280 SYRDSYESYGNSRSAPPTRGPPPSYGGSSRYD--DYSSSRDGYGGSRDSYSSSRSDLYSS 337
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQN-SSMTTTPLSSRKSRSDPV 134
+G R LR + +KN + S+ T DPV
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPV 119
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 115 (45.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFES 58
Score = 53 (23.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 157 SSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNS 206
S PP G G + +Y SR +G + DS S SRS Y+S
Sbjct: 288 SCSAPPTRGPPPSYGGSSRY---DDYSSSRDGYGGSRDSYSSSRSDLYSS 334
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 161 PPPPGVTLETNGYETHLNVTN 181
PP G ++ GY + N+++
Sbjct: 119 PPSRGGYMDDGGYSMNFNMSS 139
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 132 (51.5 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQN-SSMTTTPLSSRKSRSDPV 134
+G R LR + +KN + S+ T DPV
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPV 119
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 132 (51.5 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQN-SSMTTTPLSSRKSRSDPV 134
+G R LR + +KN + S+ T DPV
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKEELKSLGTGAPIIESPYGDPV 119
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 128 (50.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 85 LNGR-EFSGRALRVDNAASEKNKE 107
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 131 SDPVPMPVNGMEISHHSMRISVPRHYSSEEPPPPG 165
S P PMP G+ ++ + P+ P PG
Sbjct: 232 SQPQPMP--GLHVNGAPQMMQPPQMGGGVPGPMPG 264
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 121 (47.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 33/114 (28%), Positives = 54/114 (47%)
Query: 19 KRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVE 78
++Q + G +Y+GNL + L I +AG VVD+ I DK TD+ +GF FV
Sbjct: 105 EKQTTQASGEEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVT 163
Query: 79 YESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
S E A+++F+ + RT++ + +N M T + +S D
Sbjct: 164 MGSIEEAKEAMQMFNSS-QIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVD 216
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 138 VNGMEISHHSMRISVPRHYSSEEPPPPGV 166
+NG+E+ ++R+++ PP V
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSV 308
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 126 (49.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIGH 86
N VY+G DEKV E +L+++ +QAG VV+ + +D T + +G+ FVE+ S +
Sbjct: 10 NQDAAVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEFLSGKNAD 69
Query: 87 YAIKLFSGIVTLYNRTLR 104
YAIK+ + ++ Y + R
Sbjct: 70 YAIKIMN-MIKRYGKPTR 86
Score = 108 (43.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK S + G N++IGNLD ++ ++LYD G ++ I R+ +T KG+AF
Sbjct: 88 NKASAHSKKLDVGANIFIGNLDPQIG-KLLYDTFSTFGVILQTPRIMRNPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S ++ AIK + L N T+ A K ++ S T L+++ S
Sbjct: 147 IHFVSCDVVDAAIKAMNRQY-LCNHLITVSHAFKKDSKGERHGSGTEQLLAAQNPLS 202
Score = 37 (18.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 135 PMPVNGMEISHHSMRISVPRHYSSEEPPPP 164
PM +G + H MR P Y PPP
Sbjct: 344 PMGHSG-PMPLHGMRGPPPDGYIGPPRPPP 372
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 114 (45.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
Score = 52 (23.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 147 SMRISVPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNS 206
S R S + +S PP + G + + +Y SR +G + DS + SRS Y+S
Sbjct: 280 SYRDSYESYGNSRSAPPTRGPPPSYGGSSRYD--DYSSSRDGYGGSRDSYTSSRSDLYSS 337
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 129 (50.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 21 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 80
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 81 LNGR-EFSGRALRVDNAASEKNKE 103
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 129 (50.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 134 VPMP-VNGMEISHHSMRISVPRHYSSEEPPPPG 165
V MP V + + M+IS PR P PG
Sbjct: 290 VGMPGVGPVPLERGQMQISDPRAPMPRGPMAPG 322
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 128 (50.1 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 129 (50.5 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 107 (42.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+VY+GN + E L + G++ ++ I D+ET +P+GFAF+E+ E A++
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 92 FSGIVTLYNRTLRFALSGQ 110
+G R LR L+ +
Sbjct: 66 MNG-AEFNGRPLRVNLANK 83
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 128 (50.1 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 129 (50.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 129 (50.5 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 128 (50.1 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 128 (50.1 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 106 (42.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 106 (42.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VY+GNL + +L + G VVD + RD+ TD+ +GF FV Y S A+
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 93 SG 94
G
Sbjct: 65 DG 66
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 128 (50.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 128 (50.1 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 128 (50.1 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 128 (50.1 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 128 (50.1 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 128 (50.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>DICTYBASE|DDB_G0280529 [details] [associations]
symbol:cstf2 "cleavage stimulation factor 64 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0280529 GO:GO:0005634 GO:GO:0000166
GenomeReviews:CM000152_GR Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 EMBL:AAFI02000036 eggNOG:COG0724 GO:GO:0006379
KO:K14407 InterPro:IPR025742 Pfam:PF14327 RefSeq:XP_641214.1
ProteinModelPortal:Q54V94 EnsemblProtists:DDB0233706 GeneID:8622595
KEGG:ddi:DDB_G0280529 InParanoid:Q54V94 Uniprot:Q54V94
Length = 541
Score = 127 (49.8 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + NE+ L +I G+VV + DK++ K KG+ F EYE+ + AI+
Sbjct: 4 SVFVGNIPYEANEKDLIEIFSGVGKVVSFRLLEDKDSKKSKGYGFCEYENVDNALSAIRN 63
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+ + T NR LR + + +K ++
Sbjct: 64 YM-LFTFGNRVLRVSYADNEKASE 86
Score = 36 (17.7 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 161 PPPPGVT 167
PPPPG++
Sbjct: 485 PPPPGLS 491
>WB|WBGene00012558 [details] [associations]
symbol:Y37D8A.21 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL032626
GeneTree:ENSGT00690000102191 eggNOG:NOG273605 RefSeq:NP_499686.2
ProteinModelPortal:Q9XWV4 SMR:Q9XWV4 IntAct:Q9XWV4 STRING:Q9XWV4
PaxDb:Q9XWV4 EnsemblMetazoa:Y37D8A.21 GeneID:176710
KEGG:cel:CELE_Y37D8A.21 UCSC:Y37D8A.21.2 CTD:176710
WormBase:Y37D8A.21 HOGENOM:HOG000020686 InParanoid:Q9XWV4
OMA:MLPHQHF NextBio:893684 Uniprot:Q9XWV4
Length = 243
Score = 118 (46.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+ N E+V+E +L ++ IQAG VV + + RD K FA VE+E E +AI+L
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVIL-RDVRDSNAK-FALVEFEDELSVLFAIELM 72
Query: 93 SGIVTLYNRTLR 104
+G V L+N+ L+
Sbjct: 73 NG-VRLFNQELQ 83
Score = 35 (17.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 20/80 (25%), Positives = 32/80 (40%)
Query: 133 PVPMPVNGMEISH-HSMRISVPRHYSSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGA 191
P P P+ G H S P YS+ + P + + +N + Y+ R +
Sbjct: 156 PPPPPLMGGSGGHWRSGGERGPPQYSTPQMLPHQHFVNQM-MQQQINRSAPPYNGRHQNS 214
Query: 192 TLDSISRSRSGHYNSSNRHY 211
T R G+ SS+RH+
Sbjct: 215 TPHR-HHDRHGYDRSSSRHH 233
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 128 (50.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQ 115
+G R LR + +KN +
Sbjct: 77 LNGR-EFSGRALRVDNAASEKNKE 99
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 114 (45.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V+IG L ++ E + + Q G VV++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 98 NGI-KIKGRTIR 108
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 104 (41.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
NV+I NLD+ ++ + LYD G ++ + D+ K G+AFV +E++E AI+
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 101
Query: 92 FSGIV 96
+G++
Sbjct: 102 MNGML 106
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N C V + NL E VNE L ++ + G +V +++ + KET KGFAF+ Y E
Sbjct: 182 NKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKR 241
Query: 88 AIK 90
AI+
Sbjct: 242 AIE 244
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N C V + NL E VNE L ++ + G +V +++ + KET KGFAF+ Y E
Sbjct: 182 NKECTVRVTNLSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKR 241
Query: 88 AIK 90
AI+
Sbjct: 242 AIE 244
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 118 (46.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTPLSSRKSR 130
V L R LR ++ G+ ++ +S P S R+ R
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPPRSPRRRR 114
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 124 (48.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFV 77
+K Q S S +V++GN+ + E L +I + G V+ L + D+E+ KPKGF F
Sbjct: 3 DKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFC 62
Query: 78 EYESEEIGHYAIKLFSGIVTLYNRTLR 104
EY+ +E A++ +G + RTLR
Sbjct: 63 EYKDQETALSAMRNLNGY-EIGGRTLR 88
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 124 (48.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 41/121 (33%), Positives = 55/121 (45%)
Query: 24 SGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
S +S C V++GN+ E L +I + G VV + D+ET KPKG+ F EY+ EE
Sbjct: 3 SSSSQRRC-VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
Query: 84 IGHYAIKLFSGIVTLYNRTLR--FALS--GQDKNAQNSS------MTTTPLSSRKSRSDP 133
A + + R LR FA + G DK S TTT S+K P
Sbjct: 62 TALSARRNLQSY-EINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGP 120
Query: 134 V 134
V
Sbjct: 121 V 121
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 122 (48.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GRVV++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMP 137
+G AL G+ + + T P S SR P P P
Sbjct: 70 NGK----------ALDGKPIKVEQA---TKPSFSAPSRRGPPPPP 101
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 119 (46.9 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 24 SGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
SG + SG VY+GNL V++ L + + G+VV+ + D+++ + KGF FV Y+S +
Sbjct: 198 SG-AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQ 256
Query: 84 IGHYAIKLFSGIVTLYNRTLR 104
AIK G L R +R
Sbjct: 257 EVQNAIKSLDG-ADLDGRQIR 276
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 119 (46.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GN+ ++E + DI +AG+V++ + D+ET KPKGF F EY + A++
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 93 SGIVTLYNRTLRFALSGQ 110
+ + R LR S +
Sbjct: 70 ND-TEIMGRKLRVDFSNE 86
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 114 (45.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 120 (47.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 30/101 (29%), Positives = 56/101 (55%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GRVV++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDP 133
+G L + ++ + K + ++ P +S +SR P
Sbjct: 70 NG-KALDGKPIK--VEQATKPSFSTPSRRGPPTSPRSRGPP 107
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 123 (48.4 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 15 VSRNKRQI-MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKG 73
VSR +RQ + + NVYI NLD ++ E+ D+ Q G + L + +D + DKP+G
Sbjct: 244 VSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRG 302
Query: 74 FAFVEYESEEIGHYAI 89
F FV Y + E A+
Sbjct: 303 FGFVNYANHECAQKAV 318
>RGD|708462 [details] [associations]
symbol:Mki67ip "Mki67 (FHA domain) interacting nucleolar
phosphoprotein" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000794 "condensed nuclear
chromosome" evidence=IEA;ISO] [GO:0003723 "RNA binding"
evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0010923 "negative regulation of phosphatase
activity" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:708462 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000794 GO:GO:0010923 HSSP:Q9BYG3 CTD:84365
eggNOG:NOG244773 GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 KO:K14838 OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:BC086585 IPI:IPI00389917 RefSeq:NP_631925.2
UniGene:Rn.20901 ProteinModelPortal:Q5RJM0 SMR:Q5RJM0 STRING:Q5RJM0
Ensembl:ENSRNOT00000061619 GeneID:246042 KEGG:rno:246042
NextBio:623295 Genevestigator:Q5RJM0 GermOnline:ENSRNOG00000025701
Uniprot:Q5RJM0
Length = 271
Score = 117 (46.2 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 15 VSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
+ R ++ NSG VY+G+L ++E +YD Q G + + R K T +GF
Sbjct: 29 IQRRAKKKKEEKLNSGV-VYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGF 87
Query: 75 AFVEYESEEI 84
AFVE+ESE++
Sbjct: 88 AFVEFESEDV 97
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G+L V L Q G + + + D+ET + KGFAF+ Y +++ A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 93 SGIVTLYNRTLRFALSGQD 111
+GI L R +R ++ ++
Sbjct: 80 NGI-DLQGRKIRVNIAREN 97
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G+L V L Q G + + + D+ET + KGFAF+ Y +++ A+
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSKA 79
Query: 93 SGIVTLYNRTLRFALSGQD 111
+GI L R +R ++ ++
Sbjct: 80 NGI-DLQGRKIRVNIAREN 97
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 113 (44.8 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD K KGF
Sbjct: 88 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGF 146
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 147 GFVSYEKHEDANKAVEEMNG 166
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 114 (45.2 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
Score = 37 (18.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 161 PPPPGVTLETNGYETHLNVTN 181
PP G ++ GY + N+++
Sbjct: 121 PPSRGGHMDDGGYSMNFNMSS 141
>WB|WBGene00016245 [details] [associations]
symbol:C30B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0016477
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 EMBL:FO080719
HSSP:Q14103 GeneTree:ENSGT00600000084414 PIR:T15706
RefSeq:NP_495237.1 UniGene:Cel.15758 ProteinModelPortal:Q18318
SMR:Q18318 DIP:DIP-26943N IntAct:Q18318 MINT:MINT-1092197
STRING:Q18318 PaxDb:Q18318 EnsemblMetazoa:C30B5.4 GeneID:183040
KEGG:cel:CELE_C30B5.4 UCSC:C30B5.4 CTD:183040 WormBase:C30B5.4
InParanoid:Q18318 OMA:WKVIRER NextBio:919704 Uniprot:Q18318
Length = 302
Score = 117 (46.2 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIG L ++E + + Q G V+++ + RDK+T K KGFAF+ Y+ + A+ F
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 93 SGIVTLYNRTLR 104
+GI +L+ R +R
Sbjct: 100 NGI-SLHKRMIR 110
>UNIPROTKB|E1BQ47 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:AADN02026362
IPI:IPI00574341 RefSeq:XP_415396.1 ProteinModelPortal:E1BQ47
Ensembl:ENSGALT00000002045 GeneID:417111 KEGG:gga:417111
NextBio:20820467 Uniprot:E1BQ47
Length = 190
Score = 112 (44.5 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 36/148 (24%), Positives = 66/148 (44%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G G ++IGNLD K+ E L +L + G+V D + + +P+G+
Sbjct: 12 NAAILSEGALQDGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRSDP 133
FV +E+++ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEKAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNEKILPISLEPSSSTE 131
Query: 134 VPMPVNGMEISHHSMRISVPRHYSSEEP 161
P + + +S I +E P
Sbjct: 132 PPQ--SNLSVSAKIKAIEAKLKMMAENP 157
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 119 (46.9 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 33/90 (36%), Positives = 43/90 (47%)
Query: 12 NDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK 66
N RNKR +S G S N+Y+ NL +N+ +L I G +V I RDK
Sbjct: 155 NGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDMLDRIFSPYGLIVQRNILRDK 214
Query: 67 ETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96
T +P+G AFV Y E AIK + V
Sbjct: 215 LTGRPRGVAFVRYNKREEAQEAIKALNNTV 244
>TAIR|locus:2075676 [details] [associations]
symbol:AT3G47120 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL133292
EMBL:BT002472 EMBL:BT010369 IPI:IPI00540994 PIR:T45648
RefSeq:NP_190296.1 UniGene:At.35841 HSSP:Q9V535
ProteinModelPortal:Q9SD61 SMR:Q9SD61 IntAct:Q9SD61 PaxDb:Q9SD61
PRIDE:Q9SD61 EnsemblPlants:AT3G47120.1 GeneID:823865
KEGG:ath:AT3G47120 TAIR:At3g47120 eggNOG:COG0724
HOGENOM:HOG000174091 InParanoid:Q9SD61 KO:K13107 OMA:GHEEDRS
PhylomeDB:Q9SD61 ProtClustDB:CLSN2915690 Genevestigator:Q9SD61
Uniprot:Q9SD61
Length = 352
Score = 117 (46.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VY+G + + E L + Q G +VD+ + RDK T K KGFAF+ YE + A+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSR 130
+G + L RT++ G K + T +R++R
Sbjct: 98 NGALVL-GRTIKVDHCGAYKKHEEEDEETRR-QNREAR 133
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 117 (46.2 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 43/162 (26%), Positives = 64/162 (39%)
Query: 10 VPNDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR 64
V N + RNKR +S G S N+Y+ NL + + L I + G +V I R
Sbjct: 185 VLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR 244
Query: 65 DKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR---TLRFALS-GQDKNAQ-NSSM 119
DK T +P+G AFV Y E AI + ++ ++R A G+ K A S M
Sbjct: 245 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHFMSQM 304
Query: 120 TTTPLSSRKSRSDPVPMPVNGMEISHHSMRISVPRHYSSEEP 161
P + P + H I + + + P
Sbjct: 305 GVVPANVPPPPPQPPAHMAAAFNMMHRGRSIKSQQRFQNSHP 346
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 24 SGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
SG + + ++Y+G L+ VNE L++I G+V + + RD + K G+A+V Y E
Sbjct: 45 SGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYE 104
Query: 84 IGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNS 117
G AI+ + + R R S +D +A+ S
Sbjct: 105 DGEKAIEELN-YNPIEGRPCRIMWSQRDPSARRS 137
>ASPGD|ASPL0000074275 [details] [associations]
symbol:AN4665 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000080 eggNOG:COG0724
HOGENOM:HOG000174091 KO:K13107 OrthoDB:EOG441TN4 RefSeq:XP_662269.1
ProteinModelPortal:Q5B465 STRING:Q5B465
EnsemblFungi:CADANIAT00005768 GeneID:2872460 KEGG:ani:AN4665.2
OMA:VFSQNRY Uniprot:Q5B465
Length = 279
Score = 115 (45.5 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIG L ++E + I Q G V + + RDKET K +GFAF++YE + A+
Sbjct: 35 IYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLAVDNL 94
Query: 93 SGIVTLYNRTLR 104
G T+ R LR
Sbjct: 95 GG-ATVLGRVLR 105
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 105 (42.0 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS 108
+ L R LR ++
Sbjct: 78 AI-LDGRELRVQMA 90
Score = 40 (19.1 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 114 AQNSSMTTTPLSSRKSRS 131
+++ S + TP S+R+SRS
Sbjct: 186 SRSRSRSRTPASNRESRS 203
Score = 36 (17.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 195 SISRSRSGHYNSSNRHY 211
S SRSRS + S +R Y
Sbjct: 141 SRSRSRSRYSRSRSRSY 157
>TAIR|locus:2167649 [details] [associations]
symbol:CBP20 "CAP-binding protein 20" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000339 "RNA cap
binding" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0005845 "mRNA cap binding complex" evidence=TAS]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA;IMP] [GO:0031053 "primary miRNA processing"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0009086 "methionine biosynthetic
process" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AB005239 GO:GO:0005845 eggNOG:COG0724
GO:GO:0006370 GO:GO:0031053 GO:GO:0000339 HOGENOM:HOG000217589
PANTHER:PTHR18847 GO:GO:0000394 EMBL:AF140219 EMBL:BT004813
EMBL:AK227850 IPI:IPI00549008 RefSeq:NP_001078705.1
RefSeq:NP_199233.1 UniGene:At.23549 HSSP:P52298
ProteinModelPortal:Q9XFD1 SMR:Q9XFD1 IntAct:Q9XFD1 STRING:Q9XFD1
PaxDb:Q9XFD1 PRIDE:Q9XFD1 EnsemblPlants:AT5G44200.1
EnsemblPlants:AT5G44200.2 GeneID:834443 KEGG:ath:AT5G44200
TAIR:At5g44200 InParanoid:Q9XFD1 KO:K12883 OMA:YISGTIL
PhylomeDB:Q9XFD1 ProtClustDB:CLSN2687230 Genevestigator:Q9XFD1
Uniprot:Q9XFD1
Length = 257
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VYIGN+ E LY++ +AG + + + DK T P GF FV + S E A+K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 93 SGIVTLYNRTLR 104
SG + L +R +R
Sbjct: 96 SGTI-LDDRPIR 106
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 72 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 115
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 116 GGSGGTRGPPSRGGHMDDGGYSMNFNMSS 144
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
Identities = 32/106 (30%), Positives = 53/106 (50%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S G +++ N+ E+V E L DI + G++ ++++ D+ T KG+A +EYE
Sbjct: 67 SIEGWIIFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAE 126
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
AIK SG L L + NA SS + S+RK +++
Sbjct: 127 DAIKNGSGY-ELAGLKLSVDWAFITGNASLSSGVVSFKSNRKDKNN 171
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 11 PNDVVSRNKRQIMSGNSNS--GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET 68
P+ S N R G+S S ++IGNL N L+++ + G V+ +P +T
Sbjct: 248 PHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDT 307
Query: 69 DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
+PKGF +V++ S + A++ +G + R R S N N++
Sbjct: 308 QQPKGFGYVQFSSVDEAKAALEAMNGEY-IEGRPCRLDFSTPRDNTNNNN 356
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 11 PNDVVSRNKRQIMSGNSNS--GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET 68
P+ S N R G+S S ++IGNL N L+++ + G V+ +P +T
Sbjct: 248 PHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDT 307
Query: 69 DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
+PKGF +V++ S + A++ +G + R R S N N++
Sbjct: 308 QQPKGFGYVQFSSVDEAKAALEAMNGEY-IEGRPCRLDFSTPRDNTNNNN 356
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 70 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 113
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 114 GGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 31/102 (30%), Positives = 46/102 (45%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
C VY+GNL N+ L G + +++ R+ P GFAFVE+E A++
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVR 64
Query: 91 LFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
G TL +R LS +K ++N P R+ R D
Sbjct: 65 ELDGR-TLCGCRVRVELSNGEKRSRNRG--PPPSWGRRPRDD 103
>POMBASE|SPBC428.12c [details] [associations]
symbol:SPBC428.12c "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC428.12c GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q9UNP9 PIR:T40464 RefSeq:NP_595190.1 ProteinModelPortal:O94359
EnsemblFungi:SPBC428.12c.1 GeneID:2540852 KEGG:spo:SPBC428.12c
eggNOG:NOG331137 OrthoDB:EOG4TJ03G NextBio:20801968 Uniprot:O94359
Length = 116
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL V E +LY+ I G ++ + + R KE + +AFVE++ E A++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENM 66
Query: 93 SGIVTLYNRTLR-----FALSGQDKNAQNSSMT---TTPLSSRKSRSDP 133
+ + L +R +R FALS ++ + +M + + KS S P
Sbjct: 67 NYSI-LCDRCIRVSPANFALSAEETAVPDIAMLHPESADFQTFKSTSTP 114
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 109 (43.4 bits), Expect = 0.00013, P = 0.00013
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 24 SGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
S +S +Y+ L + E L D Q G ++ + + DK ++PKGFAF+ YE+EE
Sbjct: 70 SSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
Query: 84 IGHYAIKLFSG 94
AI+ G
Sbjct: 130 EAMKAIQGMHG 140
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N +YIG+++ V E + I Q GRV+ ++ ++ +T K KGF FV++E ++
Sbjct: 766 NEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADD 825
Query: 88 AIKLFSGIVTLYNRTLRFAL---SGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVN 139
AI +G L R+++ S + N N+S+ ++ + ++ + +N
Sbjct: 826 AIATMNGF-ELLGRSIKVGRPTKSSNNNNNNNNSINNNNNTNNNNNNNNINNNIN 879
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 98 (39.6 bits), Expect = 0.00014, P = 0.00014
Identities = 26/99 (26%), Positives = 51/99 (51%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTL-RFALSGQDKNAQNSSMTTTPL 124
A+ +G V + R L R +S N S +P+
Sbjct: 62 DAMMAMNGKVRI--RVLSRSPVSRMGHPPANPSRPLSPV 98
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 112 (44.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 98 NGI-KIKGRTIR 108
Score = 37 (18.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 197 SRSRSGHYNSSNRHY 211
SR R ++ S RH+
Sbjct: 312 SRERDSYHGSDRRHH 326
Score = 35 (17.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 197 SRSRSGHYNSSNRH 210
SRSRS + S+RH
Sbjct: 293 SRSRSRSPDKSHRH 306
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 23 MSGN-SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFV 77
MSG + S VY+ NL + LY I + G+VV + I +DK+T K KG AF+
Sbjct: 1 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFI 56
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++ L ++ L + G++ + + RD ET +PKGF F+ ++SE+ A+K
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 93 SG 94
G
Sbjct: 69 DG 70
>GENEDB_PFALCIPARUM|PFC0865w [details] [associations]
symbol:PFC0865w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIGNLD ++ E + + Q G +D+ + RD ET K KG+ F+ Y + A+ F
Sbjct: 38 IYIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNF 97
Query: 93 SG 94
+G
Sbjct: 98 NG 99
>UNIPROTKB|O97318 [details] [associations]
symbol:PFC0865w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000174091 KO:K13107 EMBL:AL844502
HSSP:P33240 RefSeq:XP_001351265.1 ProteinModelPortal:O97318
IntAct:O97318 MINT:MINT-1567386 EnsemblProtists:PFC0865w:mRNA
GeneID:814509 KEGG:pfa:PFC0865w EuPathDB:PlasmoDB:PF3D7_0319500
OMA:HRRRENH ProtClustDB:CLSZ2432414 Uniprot:O97318
Length = 309
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIGNLD ++ E + + Q G +D+ + RD ET K KG+ F+ Y + A+ F
Sbjct: 38 IYIGNLDNRLTEGDIVIVFSQYGEPIDVNLVRDNETGKSKGYCFLSYADQRSTILAVDNF 97
Query: 93 SG 94
+G
Sbjct: 98 NG 99
>UNIPROTKB|Q96H35 [details] [associations]
symbol:RBM18 "Probable RNA-binding protein 18" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471090 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q7YZ92 EMBL:AL162424 CTD:92400 eggNOG:NOG75816
HOGENOM:HOG000231619 HOVERGEN:HBG057119 OMA:EAKLQMM
OrthoDB:EOG4MCX1D EMBL:AK057676 EMBL:BC008942 EMBL:BC019319
IPI:IPI00062751 RefSeq:NP_149108.1 UniGene:Hs.415842
ProteinModelPortal:Q96H35 SMR:Q96H35 IntAct:Q96H35
PhosphoSite:Q96H35 DMDM:74762658 PRIDE:Q96H35 DNASU:92400
Ensembl:ENST00000417201 GeneID:92400 KEGG:hsa:92400 UCSC:uc004bma.2
GeneCards:GC09M125001 HGNC:HGNC:28413 neXtProt:NX_Q96H35
PharmGKB:PA134928031 InParanoid:Q96H35 PhylomeDB:Q96H35
GenomeRNAi:92400 NextBio:77756 Bgee:Q96H35 CleanEx:HS_RBM18
Genevestigator:Q96H35 GermOnline:ENSG00000119446 Uniprot:Q96H35
Length = 190
Score = 109 (43.4 bits), Expect = 0.00016, P = 0.00016
Identities = 31/118 (26%), Positives = 58/118 (49%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G+ G ++IGNLD K+ E L +L + G+V D + + +P+G+
Sbjct: 12 NASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
FV +E+++ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>MGI|MGI:1915139 [details] [associations]
symbol:Rbm18 "RNA binding motif protein 18" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1915139 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q7YZ92 CTD:92400 eggNOG:NOG75816 GeneTree:ENSGT00390000013765
HOGENOM:HOG000231619 HOVERGEN:HBG057119 OMA:EAKLQMM
OrthoDB:EOG4MCX1D EMBL:AK008110 EMBL:AK021243 EMBL:AK035348
EMBL:AK036252 EMBL:BC005540 IPI:IPI00461136 RefSeq:NP_001153107.1
RefSeq:NP_080710.1 UniGene:Mm.205937 ProteinModelPortal:Q9CR83
SMR:Q9CR83 STRING:Q9CR83 PhosphoSite:Q9CR83 PRIDE:Q9CR83
DNASU:67889 Ensembl:ENSMUST00000028251 GeneID:67889 KEGG:mmu:67889
InParanoid:Q9CR83 NextBio:325854 Bgee:Q9CR83 CleanEx:MM_RBM18
Genevestigator:Q9CR83 GermOnline:ENSMUSG00000026889 Uniprot:Q9CR83
Length = 190
Score = 109 (43.4 bits), Expect = 0.00016, P = 0.00016
Identities = 31/118 (26%), Positives = 58/118 (49%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G+ G ++IGNLD K+ E L +L + G+V D + + +P+G+
Sbjct: 12 NASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
FV +E+++ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>RGD|1307411 [details] [associations]
symbol:Rbm18 "RNA binding motif protein 18" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307411 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474001 CTD:92400 GeneTree:ENSGT00390000013765 OMA:EAKLQMM
RefSeq:NP_001101308.1 UniGene:Rn.2745 Ensembl:ENSRNOT00000009706
GeneID:311902 KEGG:rno:311902 NextBio:664432 Uniprot:G3V6X2
Length = 190
Score = 109 (43.4 bits), Expect = 0.00016, P = 0.00016
Identities = 31/118 (26%), Positives = 58/118 (49%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G+ G ++IGNLD K+ E L +L + G+V D + + +P+G+
Sbjct: 12 NASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQRFGKVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
FV +E+++ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 99 (39.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>WB|WBGene00000889 [details] [associations]
symbol:cyn-13 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003755
"peptidyl-prolyl cis-trans isomerase activity" evidence=IEA]
[GO:0006457 "protein folding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IGI;IMP] [GO:0006309 "apoptotic DNA
fragmentation" evidence=IGI;IMP] [GO:0004518 "nuclease activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G E V E+VL I G VV + IP D E+ K +GF FVE++ E AI
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNS 117
+ L+ +T+R + K + S
Sbjct: 73 NES-ELFGKTIRVNFARPPKATERS 96
>UNIPROTKB|Q9U2S6 [details] [associations]
symbol:cyn-13 "Protein CYN-13, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006309 GO:GO:0004518 eggNOG:COG0724
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HSSP:P52011 KO:K09564 OMA:AFIEFEL
EMBL:AL117204 GeneID:178487 KEGG:cel:CELE_Y116A8C.34 CTD:178487
PIR:T31517 RefSeq:NP_001255925.1 ProteinModelPortal:Q9U2S6
SMR:Q9U2S6 IntAct:Q9U2S6 STRING:Q9U2S6 PaxDb:Q9U2S6 PRIDE:Q9U2S6
EnsemblMetazoa:Y116A8C.34a.1 EnsemblMetazoa:Y116A8C.34a.2
EnsemblMetazoa:Y116A8C.34a.3 UCSC:Y116A8C.34.1 WormBase:Y116A8C.34a
InParanoid:Q9U2S6 NextBio:901332 Uniprot:Q9U2S6
Length = 331
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G E V E+VL I G VV + IP D E+ K +GF FVE++ E AI
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNM 72
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNS 117
+ L+ +T+R + K + S
Sbjct: 73 NES-ELFGKTIRVNFARPPKATERS 96
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 70 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 113
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 114 GGSGGTRGPPSHGGHMDDGGYSMNFNMSS 142
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 70 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 113
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 114 GGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 70 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 113
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 114 GGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 70 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 113
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 114 GGSGGTRGPPSRGGHMDDGGYSMNFNMSS 142
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 39/149 (26%), Positives = 68/149 (45%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISV 152
+G ++L D A T P S R P P P + +R
Sbjct: 71 NG------KSL-------DGKAIKVEQATKP-SFESGRRGPPPPPRS--RGPPRGLRGGR 114
Query: 153 PRHYSSEEPPPPGVTLETNGYETHLNVTN 181
+ PP G ++ GY + N+++
Sbjct: 115 GGSGGTRGPPSRGGHMDDGGYSMNFNMSS 143
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VY+ L + VN + + + G VV + IPR K T PKGFAFVE+E++E AI+
Sbjct: 129 VYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETKEQAEKAIEFL 188
Query: 93 S 93
+
Sbjct: 189 N 189
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 101 (40.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 101 (40.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 101 (40.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 58
>UNIPROTKB|F1LMQ9 [details] [associations]
symbol:Rbmx2 "RNA-binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00600000084414
OMA:HRHKRAR IPI:IPI00361641 Ensembl:ENSRNOT00000048922
Uniprot:F1LMQ9
Length = 327
Score = 111 (44.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 96
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 97 NGI-KIKGRTIR 107
Score = 36 (17.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 190 GATLDSISRSRSGHYNSSNRH 210
G + S SRSRS + S+RH
Sbjct: 287 GRSHRSRSRSRSRSPDRSHRH 307
>RGD|1562693 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562693 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:BC158684 IPI:IPI00361641
RefSeq:NP_001107258.2 UniGene:Rn.67383 ProteinModelPortal:B0BN49
STRING:B0BN49 GeneID:367930 KEGG:rno:367930 UCSC:RGD:1562693
NextBio:691882 Genevestigator:B0BN49 Uniprot:B0BN49
Length = 328
Score = 111 (44.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 98 NGI-KIKGRTIR 108
Score = 36 (17.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 190 GATLDSISRSRSGHYNSSNRH 210
G + S SRSRS + S+RH
Sbjct: 288 GRSHRSRSRSRSRSPDRSHRH 308
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
+Y+G + + V +L I G + D+ +P D +T K KGF F+++E E
Sbjct: 17 LYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPE 67
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSG 94
A+ +G
Sbjct: 62 DAMMAMNG 69
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSG 94
A+ +G
Sbjct: 62 DAMMAMNG 69
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 106 (42.4 bits), Expect = 0.00029, P = 0.00029
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+VY+GN+D K + + G+V + IP+DK T K FAFVE++ E A+ L
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVL 106
Query: 92 FSGIVTLY-NRTLRFALSGQDKNAQNSSMTTT-PLSSRKS 129
SG T++ NR + L +K + T P KS
Sbjct: 107 -SG--TMFRNRKIMVTLKRTNKPGMGRTATAQKPAHFAKS 143
>UNIPROTKB|F1PRG0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 EMBL:AAEX03026906
Ensembl:ENSCAFT00000029787 Uniprot:F1PRG0
Length = 326
Score = 111 (44.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 37 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 96
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 97 NGI-KIKGRTIR 107
Score = 35 (17.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 144 SHHSMRISVPRHYSSEEPPPPG 165
+ H + S PR+ +E PG
Sbjct: 180 TEHPVSSSSPRNQMEKEKDDPG 201
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 95 (38.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ + A+ +G
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 95 IVTLYNRTLRFALSGQDKNAQNSS 118
++ R +R +G K+++N S
Sbjct: 70 -KSVDGRQIRVDQAG--KSSENRS 90
Score = 41 (19.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 199 SRSGHYNSSNRHY 211
SRSG YN S +Y
Sbjct: 130 SRSGGYNGSRDYY 142
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 99 (39.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G++ + E L + AG V ++I D ET + KG +V +EE AI+
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 93 SGIVTLYNRTLRFALSGQDKNA 114
G + L NR + +++ K A
Sbjct: 65 DGAL-LRNRVITVSVARPQKQA 85
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G++ + E L + AG V ++I D ET + KG +V +EE AI+
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 93 SGIVTLYNRTLRFALSGQDKNA 114
G + L NR + +++ K A
Sbjct: 65 DGAL-LRNRVITVSVARPQKQA 85
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 82
M+ N C ++ LD+ +E+ L DI + G V+D I D++T K + F FV +E E
Sbjct: 1 MATNVEYTC--FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEE 58
Query: 83 E 83
+
Sbjct: 59 K 59
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83
++YI NLD +V+E +L+ + G+V+ + +D + +GFAF+E+ES +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGES-RGFAFIEFESAD 68
>UNIPROTKB|J9P250 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:AAEX03026906
ProteinModelPortal:J9P250 Ensembl:ENSCAFT00000043973 Uniprot:J9P250
Length = 341
Score = 111 (44.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 98 NGI-KIKGRTIR 108
Score = 35 (17.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 144 SHHSMRISVPRHYSSEEPPPPG 165
+ H + S PR+ +E PG
Sbjct: 181 TEHPVSSSSPRNQMEKEKDDPG 202
>UNIPROTKB|Q9Y388 [details] [associations]
symbol:RBMX2 "RNA-binding motif protein, X-linked 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471107 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL035423 EMBL:AF151837 EMBL:AL050405 EMBL:AK292855
EMBL:BC033750 IPI:IPI00032597 RefSeq:NP_057108.2 UniGene:Hs.740515
ProteinModelPortal:Q9Y388 SMR:Q9Y388 STRING:Q9Y388
PhosphoSite:Q9Y388 DMDM:62512110 PRIDE:Q9Y388
Ensembl:ENST00000305536 GeneID:51634 KEGG:hsa:51634 UCSC:uc004evt.3
CTD:51634 GeneCards:GC0XP129535 HGNC:HGNC:24282 HPA:HPA026609
neXtProt:NX_Q9Y388 PharmGKB:PA134872051 HOVERGEN:HBG056427
InParanoid:Q9Y388 OMA:HRHKRAR OrthoDB:EOG4FJ8B4 GenomeRNAi:51634
NextBio:55565 ArrayExpress:Q9Y388 Bgee:Q9Y388 CleanEx:HS_RBMX2
Genevestigator:Q9Y388 GermOnline:ENSG00000134597 Uniprot:Q9Y388
Length = 322
Score = 111 (44.1 bits), Expect = 0.00039, P = 0.00039
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 98 NGI-KIKGRTIR 108
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 95 (38.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ + A+ +G
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 95 IVTLYNRTLRFALSGQDKNAQNSS 118
++ R +R +G K+++N S
Sbjct: 70 -KSVDGRQIRVDQAG--KSSENRS 90
Score = 41 (19.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 199 SRSGHYNSSNRHY 211
SRSG YN S +Y
Sbjct: 130 SRSGGYNGSRDYY 142
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 108 (43.1 bits), Expect = 0.00040, P = 0.00040
Identities = 32/103 (31%), Positives = 50/103 (48%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTPLS----SRKSRS 131
+ L R LR ++ G+ +A S P R+SRS
Sbjct: 78 AL-LDGRELRVQMARYGRPPDAHYSRRGAPPRRYGGYGRRSRS 119
>UNIPROTKB|J9NUA3 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:AAEX03006907
RefSeq:XP_548474.2 ProteinModelPortal:J9NUA3
Ensembl:ENSCAFT00000050112 GeneID:491353 KEGG:cfa:491353
Uniprot:J9NUA3
Length = 190
Score = 106 (42.4 bits), Expect = 0.00040, P = 0.00040
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G+ G ++IGNLD K+ E L +L + G V D + + +P+G+
Sbjct: 12 NASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
FV +E+++ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 99 (39.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 99 (39.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 99 (39.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 99 (39.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>UNIPROTKB|G4NKC1 [details] [associations]
symbol:MGG_03086 "U2 snRNP component IST3" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001237 KO:K13107 RefSeq:XP_003720587.1
ProteinModelPortal:G4NKC1 EnsemblFungi:MGG_03086T0 GeneID:2682639
KEGG:mgr:MGG_03086 Uniprot:G4NKC1
Length = 330
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VY G LD+ ++E + I Q G V L + RDKET K +GF +++YE + A+
Sbjct: 35 VYFGGLDDTLSEGDIITIFSQYGEPVFLKLVRDKETGKSRGFGWLKYEDQRSTDLAVDNL 94
Query: 93 SGIVTLYNRTLR 104
G V + +R +R
Sbjct: 95 GGAV-IKDRMMR 105
>UNIPROTKB|G5E5I0 [details] [associations]
symbol:RBMX2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:HRHKRAR EMBL:DAAA02067479
Ensembl:ENSBTAT00000019649 Uniprot:G5E5I0
Length = 338
Score = 111 (44.1 bits), Expect = 0.00043, P = 0.00043
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G L ++ E + + Q G +V++ + RDK+T K KGF F+ YE + A+ F
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 93 SGIVTLYNRTLR 104
+GI + RT+R
Sbjct: 98 NGI-KIKGRTIR 108
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 112 (44.5 bits), Expect = 0.00043, P = 0.00043
Identities = 29/99 (29%), Positives = 55/99 (55%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
++IG L+ + +E+ L + GR+ ++ + +D+ET+K +GFAF+ +ES A++
Sbjct: 10 LFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDM 69
Query: 93 SGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+G +L + ++ A + K A S PLS + RS
Sbjct: 70 NG-KSLDGKAIKVAQA--TKPAFESGRRGPPLSRSRGRS 105
>ZFIN|ZDB-GENE-091204-317 [details] [associations]
symbol:si:dkey-71d15.3 "si:dkey-71d15.3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-091204-317 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00690000102191
EMBL:CR388019 IPI:IPI00611224 RefSeq:XP_003200935.1
UniGene:Dr.83519 Ensembl:ENSDART00000128830 GeneID:100526814
KEGG:dre:100526814 Uniprot:E7EYT1
Length = 212
Score = 107 (42.7 bits), Expect = 0.00044, P = 0.00044
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S S + +GNL V E +L+++ +QAG V ++I RD + P +A V Y+ E
Sbjct: 6 SLSNKTIIVGNLHRCVTEEILFELFLQAGPVDKVHISRDGQ-QSP--YACVYYKHAEAVP 62
Query: 87 YAIKLFSGIVTLYNRTLR 104
YA++L +GI LY + ++
Sbjct: 63 YAVELLNGI-WLYGQPIK 79
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 112 (44.5 bits), Expect = 0.00045, P = 0.00045
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GNL KV E + + G ++ + I RDK T KGF +V +E+ + H A+KL
Sbjct: 266 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKL 325
Query: 92 FSGIVTLYNRTLRFALS-GQDK-NAQNSSMTTTPLSSRK 128
+ L R LR S ++K QNS+ +S K
Sbjct: 326 NNS--ELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPK 362
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 101 (40.6 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 15 VSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
+ ++ QI S +S ++IG+L + ++E L+ QAG V+ + I R+K+T + + +
Sbjct: 69 MQQSPTQIQS-SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERY 127
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FVE+ + ++ ++G
Sbjct: 128 GFVEFNTHAAAEKVLQSYNG 147
Score = 49 (22.3 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 138 VNGMEISHHSMRISV--PRHYSSEEP-PPPGVTLE----TNGYETHLNVTNYDYSRR-VF 189
+NG+ S +MRI V P+ S+ E V L +NG TH + ++ D S +F
Sbjct: 239 MNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIF 298
Query: 190 GATLDS 195
LDS
Sbjct: 299 VGGLDS 304
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GNL KV E + + + G +V + I RD+ T +GF +V +E+ + H A+KL
Sbjct: 288 SVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKL 347
Query: 92 FSGIVTLYNRTLRFALS-GQDKNAQNSS 118
+ L R LR S ++K NS+
Sbjct: 348 NNS--ELMGRKLRVMRSVNKEKLKPNSN 373
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 114 (45.2 bits), Expect = 0.00049, P = 0.00049
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD + K KGF
Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGF 233
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 234 GFVSYEKHEDANKAVEEMNG 253
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 112 (44.5 bits), Expect = 0.00049, P = 0.00049
Identities = 33/99 (33%), Positives = 51/99 (51%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GNL KV E + + G ++ + I RDK T KGF +V +E+ + H A+KL
Sbjct: 288 SVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKL 347
Query: 92 FSGIVTLYNRTLRFALS-GQDK-NAQNSSMTTTPLSSRK 128
+ L R LR S ++K QNS+ +S K
Sbjct: 348 NNS--ELMGRKLRVMRSVNKEKFKQQNSNPRLKNVSKPK 384
>SGD|S000001444 [details] [associations]
symbol:IST3 "Component of the U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0000245 "spliceosomal complex
assembly" evidence=IMP] [GO:0000349 "generation of catalytic
spliceosome for first transesterification step" evidence=IMP]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000384 "first spliceosomal
transesterification activity" evidence=IMP;IDA] [GO:0005686 "U2
snRNP" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0070274 "RES complex" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001444 GO:GO:0005737 GO:GO:0000166 EMBL:BK006942
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0006406
EMBL:X79743 EMBL:Z38062 GO:GO:0000349 GO:GO:0000245 GO:GO:0070274
GO:GO:0005686 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
OrthoDB:EOG441TN4 EMBL:AY558081 PIR:S48439 RefSeq:NP_012270.1
ProteinModelPortal:P40565 SMR:P40565 DIP:DIP-2076N IntAct:P40565
MINT:MINT-389778 STRING:P40565 PaxDb:P40565 PeptideAtlas:P40565
EnsemblFungi:YIR005W GeneID:854821 KEGG:sce:YIR005W CYGD:YIR005w
GeneTree:ENSGT00600000084414 OMA:YGVPVDV NextBio:977669
Genevestigator:P40565 GermOnline:YIR005W Uniprot:P40565
Length = 148
Score = 100 (40.3 bits), Expect = 0.00050, P = 0.00050
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIGNL+ ++ E + + + G VD+ + RD+ T + +GFA+++YE + A+
Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92
Query: 93 SG 94
+G
Sbjct: 93 NG 94
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 29/107 (27%), Positives = 52/107 (48%)
Query: 10 VPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETD 69
VP V ++ K+ +G+S+ +YIG++ E + L Q G + +L + R+K+T
Sbjct: 148 VPK-VSTKVKKSAQAGSSDGPRVIYIGHIPYGFFEHEIRQYLSQFGTITNLRLSRNKKTG 206
Query: 70 KPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQN 116
KG+AFVE++ K + L+ R L+ L ++ N
Sbjct: 207 ASKGYAFVEFQDASTAAIVAKTMDAYL-LFGRILKVKLVPRESQHDN 252
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 106 (42.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + +E+VL + GR+ ++ + +D+ET+K +GFAFV YE+
Sbjct: 10 LFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYEN 58
Score = 41 (19.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 157 SSEEPPPPGVTLETNGYETHLNVTNYDYSRRVFGATLDSISRSRSGHYNSSNR 209
S PP G +G +Y S R + DS SRS Y S+NR
Sbjct: 279 SRSAPPSRGPPPSYSGSGGSSRYDDYGSSSRDGYGSRDSYPSSRSDPY-STNR 330
>UNIPROTKB|Q3ZCC5 [details] [associations]
symbol:RBM18 "Probable RNA-binding protein 18" species:9913
"Bos taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q9Y6M1
EMBL:BC102518 IPI:IPI00716541 RefSeq:NP_001029496.1
UniGene:Bt.52505 ProteinModelPortal:Q3ZCC5
Ensembl:ENSBTAT00000021769 GeneID:508615 KEGG:bta:508615 CTD:92400
eggNOG:NOG75816 GeneTree:ENSGT00390000013765 HOGENOM:HOG000231619
HOVERGEN:HBG057119 InParanoid:Q3ZCC5 OMA:EAKLQMM OrthoDB:EOG4MCX1D
NextBio:20868601 Uniprot:Q3ZCC5
Length = 190
Score = 105 (42.0 bits), Expect = 0.00053, P = 0.00053
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G+ G ++IGNLD K+ E L +L + G V D + + +P+G+
Sbjct: 12 NASILSEGSLQEGHRLWIGNLDPKITEYHLLRLLQKFGTVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
FV +E+++ AI+ +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEQAIQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 113 (44.8 bits), Expect = 0.00053, P = 0.00053
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD K KGF
Sbjct: 77 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGF 135
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 136 GFVSYEKHEDANKAVEEMNG 155
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 114 (45.2 bits), Expect = 0.00056, P = 0.00056
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD + K KGF
Sbjct: 215 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGF 273
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 274 GFVSYEKHEDANKAVEEMNG 293
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
NS ++Y+G+L+ V+E LYDI G V + + RD T G+A+V + E G
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 88 AIKLFSGIVTLYNRTLRFALSGQD 111
AI+ + + R R S +D
Sbjct: 95 AIEQLN-YTPIKGRLCRIMWSQRD 117
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 113 (44.8 bits), Expect = 0.00062, P = 0.00062
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD K KGF
Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGF 233
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 234 GFVSYEKHEDANKAVEEMNG 253
>DICTYBASE|DDB_G0292698 [details] [associations]
symbol:DDB_G0292698 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292698 GO:GO:0000166
EMBL:AAFI02000194 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG297815
RefSeq:XP_629578.1 ProteinModelPortal:Q54CU2 STRING:Q54CU2
PRIDE:Q54CU2 EnsemblProtists:DDB0233351 GeneID:8628839
KEGG:ddi:DDB_G0292698 InParanoid:Q54CU2 OMA:DPNTKES Uniprot:Q54CU2
Length = 306
Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
Identities = 43/144 (29%), Positives = 62/144 (43%)
Query: 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIG 85
+ N+G +++ NL+ + E L D G+V+D I D T + +GF FV Y S +
Sbjct: 66 DQNNGNTLHVSNLNPRTRESDLRDTFASIGKVIDCTILLDPNTKESRGFGFVTYSSGDEA 125
Query: 86 HYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNG--MEI 143
AI+ + T+R S + K A++ + S RK R P G
Sbjct: 126 QDAIQRLDS-TKIDGNTIRVEKSKRSK-ARDPTPGFYMGSERKKR--PYGNNFGGPNQHH 181
Query: 144 SHHSMRISVPRH--YSSEEPPPPG 165
HH MR PR Y S P PG
Sbjct: 182 HHHHMR-GDPRGNPYGSY-PGYPG 203
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 111 (44.1 bits), Expect = 0.00063, P = 0.00063
Identities = 31/88 (35%), Positives = 47/88 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GNL KV E + + G VV + I RD T +GF +V +E+ + H A+KL
Sbjct: 284 SVFVGNLPYKVEESAVEKHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFENTDAVHLALKL 343
Query: 92 FSGIVTLYNRTLRFALS-GQDKNAQNSS 118
+ L R LR S ++K QNS+
Sbjct: 344 NNS--ELMGRKLRVMRSIHKEKLKQNSN 369
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD + K KGF
Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGF 233
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 234 GFVSYEKHEDANKAVEEMNG 253
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD K KGF
Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGF 233
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 234 GFVSYEKHEDANKAVEEMNG 253
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 113 (44.8 bits), Expect = 0.00066, P = 0.00066
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 16 SRNKRQIMSG-NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF 74
SR +R+ G + NVYI N E+V++ L ++ Q G+ + + + RD + K KGF
Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGF 233
Query: 75 AFVEYESEEIGHYAIKLFSG 94
FV YE E + A++ +G
Sbjct: 234 GFVSYEKHEDANKAVEEMNG 253
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 106 (42.4 bits), Expect = 0.00067, P = 0.00067
Identities = 28/91 (30%), Positives = 46/91 (50%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+ NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+ G
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77
Query: 95 IVTLYNRTLRFALS--GQDKNAQNSSMTTTP 123
V L R LR ++ G+ ++ +S P
Sbjct: 78 AV-LDGRELRVQMARYGRPPDSHHSRRGPPP 107
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 113 (44.8 bits), Expect = 0.00068, P = 0.00068
Identities = 24/89 (26%), Positives = 47/89 (52%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
C++Y+G+LD V + LYD + +VV + + RD T+ G+ +V Y + + A++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 91 LFSGIVTLYNRTLRFALSGQDKNAQNSSM 119
+ L + +R S +D +A+ S +
Sbjct: 106 KLN-YSYLNGKMIRITYSSRDSSARRSGV 133
>ZFIN|ZDB-GENE-040426-1764 [details] [associations]
symbol:rbm18 "RNA binding motif protein 18"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1764 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q7YZ92 CTD:92400 eggNOG:NOG75816
GeneTree:ENSGT00390000013765 HOGENOM:HOG000231619
HOVERGEN:HBG057119 OMA:EAKLQMM OrthoDB:EOG4MCX1D EMBL:BC059651
IPI:IPI00481916 RefSeq:NP_957087.1 UniGene:Dr.82770
ProteinModelPortal:Q6PBM8 Ensembl:ENSDART00000064975 GeneID:393766
KEGG:dre:393766 InParanoid:Q6PBM8 NextBio:20814763 Bgee:Q6PBM8
Uniprot:Q6PBM8
Length = 188
Score = 104 (41.7 bits), Expect = 0.00069, P = 0.00069
Identities = 34/126 (26%), Positives = 64/126 (50%)
Query: 22 IMSGNS-NSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGFAFV 77
I+SG S G ++IGN+D K+ E L +L + G+V D + + +P+G+ FV
Sbjct: 13 ILSGGSAQDGHRLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFV 72
Query: 78 EYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQD---KNAQNSSMTTTPLSSRKSRSDP 133
+ ++E AI+ +G + L + +R+A + + + +N + P SS ++ P
Sbjct: 73 NFHTKEEAERAIQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPASLEP-SSSEAEDLP 131
Query: 134 VPMPVN 139
+ VN
Sbjct: 132 TSLSVN 137
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 106 (42.4 bits), Expect = 0.00069, P = 0.00069
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 11 PNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDK 70
P+ V +RN I+ S+ G ++IG L E+ L + + G + + + RD+ETD+
Sbjct: 6 PSCVFNRNSEVIIM--SDEG-KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDR 62
Query: 71 PKGFAFVEYESEEIGHYAIKLFSG 94
+GF FV +E+ E A+ +G
Sbjct: 63 SRGFGFVTFENPEDAKDAMAAMNG 86
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 103 (41.3 bits), Expect = 0.00071, P = 0.00071
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L ++VNE +L+ I G + D+ P D+ K + F FV + E A+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 93 SGIVTLYNR--TLRFALSGQDKNAQ 115
G LY R T+ +AL + K +
Sbjct: 75 DG-AELYGRVLTVNYALPEKIKGGE 98
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 107 (42.7 bits), Expect = 0.00072, P = 0.00072
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
N+++ NLD+ +N + LYD + G ++ + D+ K G+ FV +E+ E AIK
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKK 157
Query: 92 FSGIV 96
+G++
Sbjct: 158 MNGML 162
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 112 (44.5 bits), Expect = 0.00072, P = 0.00072
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 6 KHSFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRD 65
K ++ ++ KR I +++G + ++ E+ +Q GRV+D + D
Sbjct: 170 KEHYLDGKIIDP-KRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMID 228
Query: 66 KETDKPKGFAFVEYESE 82
K+T +P+GF FV ++SE
Sbjct: 229 KDTGRPRGFGFVTFDSE 245
>UNIPROTKB|F1SLQ8 [details] [associations]
symbol:RBM18 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:92400
GeneTree:ENSGT00390000013765 OMA:EAKLQMM EMBL:CU041257
RefSeq:XP_001925831.1 RefSeq:XP_001925851.1 UniGene:Ssc.14096
ProteinModelPortal:F1SLQ8 Ensembl:ENSSSCT00000029013
GeneID:100154045 KEGG:ssc:100154045 Uniprot:F1SLQ8
Length = 190
Score = 104 (41.7 bits), Expect = 0.00072, P = 0.00072
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETD-KPKGF 74
N + G+ G ++IGNLD K+ E L +L + G V D + + +P+G+
Sbjct: 12 NASILSEGSLQEGHRLWIGNLDPKITEYHLLKLLQKFGTVKQFDFLFHKSGALEGQPRGY 71
Query: 75 AFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
FV +E+++ AI +G + L + +R+A + + N + P+S S S
Sbjct: 72 CFVNFETKQEAEQAIHCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSS 129
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 99 (39.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
S+ G +++G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ +
Sbjct: 3 SDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 87 YAIKLFSGIVTLYNRTLRFALSGQDKNAQNSS 118
A+ +G ++ R +R +G K++ N S
Sbjct: 62 DAMMAMNG-KSVDGRQIRVDQAG--KSSDNRS 90
Score = 35 (17.4 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 199 SRSGHYNSSNRHY 211
SRSG Y S +Y
Sbjct: 130 SRSGGYGGSRDYY 142
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 113 (44.8 bits), Expect = 0.00073, P = 0.00073
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 3 PSPKHSFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYI 62
P P P+ + S + S +S+ +++G + K +E L +Q G V++ I
Sbjct: 75 PLPTQILSPSSLSSSSSSTFSSSSSSKCTKIFVGGISWKADENTLKTYFLQFGNVLECKI 134
Query: 63 PRDKETDKPKGFAFVEYESEE 83
D T+K KG+ F+ +E+E+
Sbjct: 135 IMDYNTNKSKGYGFITFENED 155
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 101 (40.6 bits), Expect = 0.00075, P = 0.00075
Identities = 25/92 (27%), Positives = 50/92 (54%)
Query: 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIG 85
+S G +++G L+ +ER L D G + ++ + +D+ET + +GF F+ + + E
Sbjct: 2 SSEEG-KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 86 HYAIKLFSGIVTLYNRTLRFALSGQDKNAQNS 117
A++ +G +L R +R +G K+A+ S
Sbjct: 61 SNAMRAMNG-ESLDGRQIRVDHAG--KSARGS 89
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 95 (38.5 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 22/84 (26%), Positives = 47/84 (55%)
Query: 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94
+G L NE+ L + + G++ ++ + +D+ET + +GF FV +E+ + A+ +G
Sbjct: 10 VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 69
Query: 95 IVTLYNRTLRFALSGQDKNAQNSS 118
++ R +R +G K+++N S
Sbjct: 70 -KSVDGRQIRVDQAG--KSSENRS 90
Score = 41 (19.5 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 199 SRSGHYNSSNRHY 211
SRSG YN S +Y
Sbjct: 130 SRSGGYNGSRDYY 142
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 104 (41.7 bits), Expect = 0.00087, P = 0.00087
Identities = 24/89 (26%), Positives = 48/89 (53%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
NV+I NL + ++ + LY+I G ++ + D++ PKG+ FV ++ +E AI +
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDV 148
Query: 92 FSGIVTLYNRTL--RFALSGQDKNAQNSS 118
+G+ Y + RF S +++ A+ +
Sbjct: 149 MNGMFLNYRKIFVGRFK-SHKEREAERGA 176
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 98 (39.6 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 2 VPSPKHSFVP-NDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL 60
VPS S N S+ +G+ N+ N+Y+GNL+ K++E+ L +I + G + +
Sbjct: 187 VPSSSVSTTSQNSSSSKESGSFDTGDPNT-TNLYLGNLNPKISEQQLMEIFGRYGPLASI 245
Query: 61 YI--PRDKETDKPKG--FAFVEYESEEIGHYAIKLFSG 94
I PR +E +K +G FV Y S + A+K +G
Sbjct: 246 KIMWPRSEE-EKQRGRNCGFVAYMSRKDAERALKTLNG 282
Score = 58 (25.5 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 102 TLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMPVNGMEISHHSMRISVPRHYSSEEP 161
T R + S + +++ S + + R SRS P +G S S S R EEP
Sbjct: 885 TSRSSKSSKRNRSRSPSSSPKRYTERSSRSSRYETPASGSSRSRSSPTSS--RSSRREEP 942
Query: 162 PPP 164
PP
Sbjct: 943 SPP 945
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 211 211 0.00081 112 3 11 23 0.42 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 234
No. of states in DFA: 561 (60 KB)
Total size of DFA: 154 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.56u 0.17s 22.73t Elapsed: 00:00:01
Total cpu time: 22.58u 0.17s 22.75t Elapsed: 00:00:01
Start: Fri May 10 14:09:33 2013 End: Fri May 10 14:09:34 2013
WARNINGS ISSUED: 1