BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038096
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLR 104
AIK+ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNG-QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLR 104
AIK+ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNG-QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N VY+G LDEKV+E +L+++ +QAG VV+ ++P+D+ T + +G+ FVE+ SEE Y
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLR 104
AIK+ + ++ LY + +R
Sbjct: 70 AIKIMN-MIKLYGKPIR 85
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 18 NKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAF 76
NK + N + G N++IGNLD +++E++LYD G ++ I RD +T KG+AF
Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146
Query: 77 VEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSRKSRS 131
+ + S + AI+ +G L NR T+ +A K ++ S L+++ S
Sbjct: 147 INFASFDASDAAIEAMNG-QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLS 202
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N +Y+G LDEKV+E +L+++++QAG VV + +P+D+ T +GF FVE+ EE Y
Sbjct: 10 NQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADY 69
Query: 88 AIKLFSGIVTLYNRTLR 104
AIK+ + ++ LY + ++
Sbjct: 70 AIKILN-MIKLYGKPIK 85
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 15 VSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKG 73
+ NK N + G N+++GNLD +V+E++LYD G ++ + I RD ++ KG
Sbjct: 84 IKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKG 143
Query: 74 FAFVEYESEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQNSSMTTTPLSSR---- 127
FAF+ + S E A++ +G L NR T+ +A K ++ + L+++
Sbjct: 144 FAFINFASFEASDTALEAMNGQF-LCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLF 202
Query: 128 -KSR-----SD-PVPMPVNGMEISHHSMRISVPRHYSSEE--PPPPGVTLETNGYE 174
K R SD P+ +P N ++ + ++ H + PPP + + +GY+
Sbjct: 203 PKDRPHQVFSDVPLGVPAN-TPLAMPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQ 257
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N +Y+GNLDEKV + +L+++ +QAG VV+++IPRD+ + GF F E+ E+ Y
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 88 AIKLFSGIVTLYNRTLRFALSGQDK 112
A ++ + V L+ + +R + QD+
Sbjct: 68 ACQILNQ-VKLFGKPIRVNRASQDR 91
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEI 84
N+ G N+++GNLD V+ERVLYD G++V + RD E + KG+ FV Y+S E
Sbjct: 94 NTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFET 152
Query: 85 GHYAIK 90
AI+
Sbjct: 153 ADAAIE 158
>sp|Q9Y580|RBM7_HUMAN RNA-binding protein 7 OS=Homo sapiens GN=RBM7 PE=1 SV=1
Length = 266
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDG-KPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMT 120
+GI LY R ++ SG Q+ S++
Sbjct: 71 NGI-KLYGRPIKIQFRSGSSHAPQDVSLS 98
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HSH49 PE=1 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 82
M+ +++SG VY+GN+D ++ + LY++ IQ V+ + P+DK +G+AF+E+ ++
Sbjct: 1 MNYSADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQ 60
Query: 83 EIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNSSMTTTPLSSRKSRSDPVPMP 137
YAIK+ + V LY+R ++ + NS+ TT L S S+ +P+
Sbjct: 61 GDAQYAIKIMNNTVRLYDRLIKV------RQVTNST-GTTNLPSNISKDMILPIA 108
>sp|Q80YT9|RBM11_MOUSE Splicing regulator RBM11 OS=Mus musculus GN=Rbm11 PE=1 SV=1
Length = 238
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + + +D++ KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTLCKDRD-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
+GI LY R + RF S + A S + ++S R+D
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSSEPANQSFESCAKINSHSFRND 113
>sp|P57052|RBM11_HUMAN Splicing regulator RBM11 OS=Homo sapiens GN=RBM11 PE=1 SV=1
Length = 281
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
V++GNL+ +V E +LY++ +QAG + + I +D+E KPK F FV ++ E YAI L
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70
Query: 93 SGIVTLYNRTL----RFALSGQDKNAQNSSMTTTPLSSRKSRSD 132
+GI LY R + RF S + A S + ++S R++
Sbjct: 71 NGI-RLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNE 113
>sp|Q3MHY8|RBM7_BOVIN RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1
Length = 262
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ KPK FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDG-KPKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMT 120
+GI L+ R ++ +G +Q S++
Sbjct: 71 NGI-KLFGRPIKIQFRAGSSHASQEVSLS 98
>sp|Q9CQT2|RBM7_MOUSE RNA-binding protein 7 OS=Mus musculus GN=Rbm7 PE=1 SV=1
Length = 265
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL+ KV E +L+++ QAG V+ + IP+DK+ K K FAFV ++ E YA+ L
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDG-KLKQFAFVNFKHEVSVPYAMNLL 70
Query: 93 SGIVTLYNRTLRFAL-SGQDKNAQNSSMT 120
+GI L+ R ++ SG +Q++S++
Sbjct: 71 NGI-KLFGRPIKIQFRSGSSHASQDASVS 98
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2
SV=1
Length = 301
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALS 108
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2
SV=2
Length = 301
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALS 108
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALS 108
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1
SV=1
Length = 301
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+Y+G L E+V+++VL+ I G + D+ IP D ET+K +GFAFVE+E E AI
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 93 SGIVTLYNRTLRFALS 108
+ L+ RT+R L+
Sbjct: 68 NE-SELFGRTIRVNLA 82
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGH 86
SN +Y+G L ++V ER+L + I G + D+ +P D E+ + +GFAF+EYE E
Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAA 61
Query: 87 YAIKLFSGIVTLYNRTLRFALS 108
AI + L RT+R L+
Sbjct: 62 AAIDNMND-SELCGRTIRVNLA 82
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQN 116
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKEE 100
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKN 113
+G R LR + +KN
Sbjct: 77 LNG-REFSGRALRVDNAASEKN 97
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKNAQN 116
+G R LR + +KN +
Sbjct: 77 LNG-REFSGRALRVDNAASEKNKEE 100
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKN 113
+G R LR + +KN
Sbjct: 77 LNG-REFSGRALRVDNAASEKN 97
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 20 RQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEY 79
RQI S+ + NL +++NE L D+ + GRV+ ++I RDK T PKGFAFV +
Sbjct: 166 RQIDRNRSDEN-TCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
Query: 80 ESEEIGHYAIKLFSGIVTLYNRTLRFALS 108
ES + AI + I +Y+ L+ +
Sbjct: 225 ESRDDAARAIAELNDI-RMYHMVLKVEWT 252
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKN 113
+G R LR + +KN
Sbjct: 77 LNG-REFSGRALRVDNAASEKN 97
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
+V++GN+ + E L DI + G VV + D+ET KPKG+ F EY+ +E A++
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 92 FSGIVTLYNRTLRFALSGQDKN 113
+G R LR + +KN
Sbjct: 77 LNG-REFSGRALRVDNAASEKN 97
>sp|A8WLV5|EIF3G_CAEBR Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis briggsae GN=eif-3.G.1 PE=3 SV=2
Length = 261
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 23 MSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 82
M N + + NL +++NE L D+ + GRV+ ++I RDK T PKGFAFV +ES
Sbjct: 173 MERNRSDENTCRVTNLPQEMNEDELRDVFGRIGRVIRIFIARDKITGLPKGFAFVTFESR 232
Query: 83 EIGHYAIKLFSGIVTLYNRTLRFALS 108
+ AI + I +Y+ L+ +
Sbjct: 233 DDAARAIAELNDI-RMYHMVLKVEWT 257
>sp|O94290|IST3_SCHPO U2 snRNP component ist3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=cwf29 PE=1 SV=1
Length = 217
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+YIGNLD +NE + + + G VD+ + RDKET K KGFAF++YE + A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 93 SGIVTLYNRTLR 104
+ V L +R +R
Sbjct: 93 TN-VKLLDRLVR 103
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
++IG L+ + NE+ L + + GRVV++ + +D+ET+K +GFAFV +ES A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 92 FSGIV 96
+G
Sbjct: 69 LNGKA 73
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 91 LFSG 94
+G
Sbjct: 68 DMNG 71
>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4
PE=3 SV=1
Length = 359
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N + I +LD V E +L ++ IQA VV ++IP+DK T + G A+VE++S Y
Sbjct: 10 NHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEY 69
Query: 88 AIKL 91
A+K+
Sbjct: 70 ALKV 73
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR--DKETDKPKGFAFVEYESEEIGHY 87
G N++IGNLD V+ER+L+D + G ++ + P+ E KGFAF+ ++S E
Sbjct: 97 GANLFIGNLDADVDERILHDTFSRFGTII--FTPKVMRDENGVSKGFAFINFDSFEASDA 154
Query: 88 AIK 90
AI+
Sbjct: 155 AIE 157
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 6 KHSFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRD 65
K +V + V R ++ + + NVYI NLD ++ E+ D+ Q G + L + +D
Sbjct: 236 KKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD 295
Query: 66 KETDKPKGFAFVEYESEEIGHYAI 89
+ DKP+GF FV Y + E A+
Sbjct: 296 -QNDKPRGFGFVNYANHECAQKAV 318
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
NV+I NLD ++ + L+D G+++ + D E KG+ FV ++S E + AI+
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEH 227
Query: 92 FSGIV 96
+G++
Sbjct: 228 VNGML 232
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 91 LFSG 94
+G
Sbjct: 68 DMNG 71
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 91 LFSG 94
+G
Sbjct: 68 DMNG 71
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 91 LFSG 94
+G
Sbjct: 68 DMNG 71
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 91 LFSG 94
+G
Sbjct: 68 DMNG 71
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Query: 91 LFSG 94
+G
Sbjct: 68 DMNG 71
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAI 89
G +Y+GNL + L +I +AG V ++ I D+ TD+ +GFAFV S E AI
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 90 KLFSG 94
+LF G
Sbjct: 173 RLFDG 177
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 13 DVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPK 72
+V+S R G +S +Y+ NL + + L D + + D+ + + +
Sbjct: 199 EVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSR 258
Query: 73 GFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110
GF F+ + S E + A+ + V L R LR ++GQ
Sbjct: 259 GFGFITFSSAEAMNSALDTMNE-VELEGRPLRLNVAGQ 295
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 36/50 (72%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFES 58
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES
Sbjct: 8 GKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFES 58
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
++IG L+ + NE+ L + + GR+V++ + +D+ET+K +GFAFV +ES A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 92 FSG 94
+G
Sbjct: 69 MNG 71
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++G+L+++ E+ + +I +Q G V D+Y+ RD E + +G FV+Y S+E AI
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 93 SGIVTL--YNRTL--RFALSGQDKNAQNSSMT 120
+G T+ N+ L RFA + K ++ M
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESREMA 303
Score = 37.0 bits (84), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 8 SFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKE 67
SF DV R+ S +++G++ E + Q G V+++ + +DK
Sbjct: 107 SFTGTDVSDRS----------STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKR 156
Query: 68 TDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98
T + +G FV+Y + + AI+ +TL
Sbjct: 157 TGQQQGCCFVKYATSKDADRAIRALHNQITL 187
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 10 VPNDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR 64
V N + RNKR +S G S N+Y+ NL + + L I + G +V I R
Sbjct: 187 VLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR 246
Query: 65 DKETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96
DK T +P+G AFV Y E AI + ++
Sbjct: 247 DKLTGRPRGVAFVRYNKREEAQEAISALNNVI 278
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 22 IMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
+M +S N+ + L + + +R LY + G + I RD +T G+AFV++ S
Sbjct: 118 MMHDQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 177
Query: 82 EEIGHYAIKLFSGIVTLYNRTLR 104
E AIK+ +GI T+ N+ L+
Sbjct: 178 EMDSQRAIKVLNGI-TVRNKRLK 199
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 10 VPNDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR 64
V N + RNKR +S G S N+Y+ NL + + L I + G +V I R
Sbjct: 185 VLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILR 244
Query: 65 DKETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96
DK T +P+G AFV Y E AI + ++
Sbjct: 245 DKLTGRPRGVAFVRYNKREEAQEAISALNNVI 276
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 22 IMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES 81
+M+ S N+ + L + + +R LY + G + I RD +T G+AFV++ S
Sbjct: 116 LMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 175
Query: 82 EEIGHYAIKLFSGIVTLYNRTLR 104
E AIK+ +GI T+ N+ L+
Sbjct: 176 EMDSQRAIKVLNGI-TVRNKRLK 197
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 12 NDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK 66
N V RNKR +S G S N+Y+ NL + + L I + G +V I RDK
Sbjct: 147 NGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 206
Query: 67 ETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96
T KP+G AFV + E AI + ++
Sbjct: 207 LTGKPRGVAFVRFNKREEAQEAISALNNVI 236
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 28 NSGCN---VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEI 84
N GCN + + L + + +R LY + G + I +D +T G+AFV++ SE
Sbjct: 79 NQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEID 138
Query: 85 GHYAIKLFSGIVTLYNRTLRFALS 108
AIK +G VT+ N+ L+ + +
Sbjct: 139 AQNAIKSLNG-VTVRNKRLKVSYA 161
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC644.16 PE=4 SV=1
Length = 422
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHY 87
N C VY+GN+ ++ E + DI Q+G V + D E+ +PKG+ F EY
Sbjct: 2 NPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAAS 61
Query: 88 AIK 90
A++
Sbjct: 62 AVR 64
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 12 NDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK 66
N + RNKR +S G S N+Y+ NL + + L I + G +V I RDK
Sbjct: 172 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDK 231
Query: 67 ETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96
T KP+G AFV + E AI + ++
Sbjct: 232 LTGKPRGVAFVRFNKREEAQEAISALNNVI 261
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYA 88
+G N+ + L + + +R LY + G + I RD +T G+AFV++ +E A
Sbjct: 108 NGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRA 167
Query: 89 IKLFSGIVTLYNRTLRFALS 108
IK +GI T+ N+ L+ + +
Sbjct: 168 IKSLNGI-TVRNKRLKVSYA 186
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
++ + NL + + L + + GRV D+YIPRD+ T + +GFAFV + + A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 91 LFSGIVTLYNRTLRFALS 108
G V L R LR ++
Sbjct: 74 AMDGAV-LDGRELRVQMA 90
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 48.1 bits (113), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 8 SFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKE 67
S VP D S ++ SG + + ++Y+G L+ VNE L++I G+V + + RD
Sbjct: 46 SSVPAD--SAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAV 103
Query: 68 TDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQNS 117
+ K G+A+V Y E G AI+ + + R R S +D +A+ S
Sbjct: 104 SKKSLGYAYVNYHKLEDGEKAIEELN-YTPVEGRPCRIMWSQRDPSARRS 152
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 KHSFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRD 65
+ +V V +++ + + N+Y+ N+D E+ ++ G++ +Y+ +D
Sbjct: 223 REVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD 282
Query: 66 KETDKPKGFAFVEYESEEIGHYAIK 90
E K KGF FV +E E A++
Sbjct: 283 AE-GKSKGFGFVNFEEHEAAAKAVE 306
Score = 38.9 bits (89), Expect = 0.026, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91
N++I NL ++ + L+D G+++ + + D + + K F FV YE+EE AI+
Sbjct: 156 NIFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIES 214
Query: 92 FSGIV 96
+G++
Sbjct: 215 VNGML 219
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 12 NDVVSRNKRQIMS-----GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK 66
N + RNKR +S G S N+Y+ NL + + L I + G +V I RDK
Sbjct: 164 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDK 223
Query: 67 ETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96
T +P+G AFV + E AI + ++
Sbjct: 224 LTGRPRGVAFVRFNKREEAQEAISALNNVI 253
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYA 88
+G N+ + L + + +R LY + G + I +D +T G+AFV++ SE A
Sbjct: 100 NGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA 159
Query: 89 IKLFSGIVTLYNRTLRFALS 108
IK +GI T+ N+ L+ + +
Sbjct: 160 IKTVNGI-TVRNKRLKVSYA 178
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 25 GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEI 84
GN++SG ++I NL + +E +L+ + G V ++ + RD T+K KGF FV + E
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 85 GHYAIKLFSG 94
AI +G
Sbjct: 298 AAMAIASLNG 307
Score = 35.0 bits (79), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
N+YI L + ++ + D+ + GR+++ + D+ T +G AF+ ++ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 91 LFSG 94
F+G
Sbjct: 166 SFNG 169
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 25 GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEI 84
GN++SG ++I NL + +E +L+ + G V ++ + RD T+K KGF FV + E
Sbjct: 238 GNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEE 297
Query: 85 GHYAIKLFSG 94
AI +G
Sbjct: 298 AAMAIASLNG 307
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90
N+YI L + ++ + D+ + GR+++ + D+ T +G AF+ ++ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 91 LFSG 94
F+G
Sbjct: 166 SFNG 169
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
VY+GNL V++ L + + G+VVD + D+++ + +GF FV Y S E + AI+
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255
Query: 93 SGIVTLYNRTLR 104
G V L R +R
Sbjct: 256 DG-VDLNGRAIR 266
Score = 37.4 bits (85), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92
+++GNL + L ++ +AG V + + DK T + +GF FV S+E A + F
Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148
Query: 93 SGIVTLYNRTLR 104
+G L R LR
Sbjct: 149 NGY-ELDGRALR 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,179,023
Number of Sequences: 539616
Number of extensions: 3517490
Number of successful extensions: 7923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 6888
Number of HSP's gapped (non-prelim): 1110
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)