Query 038096
Match_columns 211
No_of_seqs 244 out of 1684
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 07:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.3E-20 2.8E-25 143.6 12.5 84 27-111 31-114 (144)
2 KOG0149 Predicted RNA-binding 99.8 1.9E-19 4.2E-24 143.3 11.2 79 30-110 12-90 (247)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.4E-18 2.9E-23 150.1 11.9 81 30-111 269-349 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.5E-18 5.5E-23 148.4 11.4 83 29-112 2-84 (352)
5 TIGR01659 sex-lethal sex-letha 99.8 3E-18 6.5E-23 147.8 10.7 84 28-112 105-188 (346)
6 PF00076 RRM_1: RNA recognitio 99.7 2E-17 4.3E-22 109.8 8.9 70 33-104 1-70 (70)
7 KOG0122 Translation initiation 99.7 2E-17 4.3E-22 132.4 9.8 85 26-111 185-269 (270)
8 KOG0144 RNA-binding protein CU 99.7 7.3E-18 1.6E-22 144.1 6.6 112 3-115 95-210 (510)
9 TIGR01659 sex-lethal sex-letha 99.7 7.1E-17 1.5E-21 139.2 11.3 85 29-114 192-278 (346)
10 KOG0107 Alternative splicing f 99.7 1.4E-16 3.1E-21 121.7 8.3 79 29-113 9-87 (195)
11 KOG0121 Nuclear cap-binding pr 99.7 1.2E-16 2.6E-21 116.4 7.3 81 28-109 34-114 (153)
12 KOG0111 Cyclophilin-type pepti 99.7 4.8E-17 1E-21 128.5 5.6 93 28-121 8-100 (298)
13 TIGR01645 half-pint poly-U bin 99.7 4.4E-16 9.5E-21 141.8 12.5 82 30-112 204-285 (612)
14 TIGR01645 half-pint poly-U bin 99.7 2.7E-16 5.9E-21 143.1 10.3 80 29-109 106-185 (612)
15 PF14259 RRM_6: RNA recognitio 99.7 5.5E-16 1.2E-20 103.4 8.9 70 33-104 1-70 (70)
16 PLN03120 nucleic acid binding 99.6 9.5E-16 2.1E-20 125.6 10.6 76 30-110 4-79 (260)
17 TIGR01628 PABP-1234 polyadenyl 99.6 1.2E-15 2.5E-20 139.8 11.1 79 32-111 2-80 (562)
18 KOG4207 Predicted splicing fac 99.6 3.7E-16 8E-21 122.4 6.6 83 30-113 13-95 (256)
19 KOG0125 Ataxin 2-binding prote 99.6 2E-15 4.4E-20 125.3 11.0 82 27-111 93-174 (376)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.4E-15 5.3E-20 135.9 12.3 83 29-112 294-376 (509)
21 KOG0117 Heterogeneous nuclear 99.6 1.1E-15 2.5E-20 131.2 9.5 88 28-116 81-169 (506)
22 KOG0148 Apoptosis-promoting RN 99.6 6.2E-16 1.3E-20 125.5 7.2 82 31-113 63-144 (321)
23 KOG0131 Splicing factor 3b, su 99.6 6.9E-16 1.5E-20 118.7 7.0 83 26-109 5-87 (203)
24 KOG0113 U1 small nuclear ribon 99.6 1.8E-15 3.9E-20 124.3 9.6 81 28-109 99-179 (335)
25 KOG0126 Predicted RNA-binding 99.6 4.9E-17 1.1E-21 125.0 0.3 79 29-108 34-112 (219)
26 KOG0145 RNA-binding protein EL 99.6 1.4E-15 3.1E-20 122.9 8.7 100 29-129 40-140 (360)
27 TIGR01622 SF-CC1 splicing fact 99.6 2.7E-15 5.8E-20 134.0 11.4 80 30-110 186-265 (457)
28 PLN03213 repressor of silencin 99.6 1.7E-15 3.7E-20 131.7 9.7 77 30-111 10-88 (759)
29 TIGR01628 PABP-1234 polyadenyl 99.6 2.6E-15 5.6E-20 137.6 11.2 84 28-113 283-366 (562)
30 KOG0148 Apoptosis-promoting RN 99.6 1.1E-14 2.4E-19 118.3 13.4 82 25-113 159-240 (321)
31 TIGR01648 hnRNP-R-Q heterogene 99.6 2.3E-15 5E-20 136.7 10.6 81 28-110 56-137 (578)
32 TIGR01622 SF-CC1 splicing fact 99.6 6.6E-15 1.4E-19 131.5 11.9 82 29-112 88-169 (457)
33 KOG0130 RNA-binding protein RB 99.6 2.3E-15 5.1E-20 110.6 6.4 83 26-109 68-150 (170)
34 smart00362 RRM_2 RNA recogniti 99.6 1.9E-14 4.2E-19 94.6 9.9 72 32-106 1-72 (72)
35 KOG0108 mRNA cleavage and poly 99.6 6.9E-15 1.5E-19 129.2 9.5 83 31-114 19-101 (435)
36 COG0724 RNA-binding proteins ( 99.6 1.3E-14 2.9E-19 118.5 10.6 80 30-110 115-194 (306)
37 smart00360 RRM RNA recognition 99.6 2.4E-14 5.3E-19 93.7 8.8 71 35-106 1-71 (71)
38 PLN03121 nucleic acid binding 99.6 2.8E-14 6.1E-19 115.3 10.8 76 29-109 4-79 (243)
39 KOG0144 RNA-binding protein CU 99.5 2.2E-14 4.7E-19 123.0 9.2 87 28-114 32-120 (510)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 9.7E-14 2.1E-18 125.0 11.4 78 28-111 273-351 (481)
41 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-13 2.4E-18 125.8 11.5 75 30-113 233-309 (578)
42 cd00590 RRM RRM (RNA recogniti 99.5 2.5E-13 5.4E-18 89.6 10.2 74 32-107 1-74 (74)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 2E-13 4.4E-18 123.0 11.0 75 30-111 2-78 (481)
44 KOG0114 Predicted RNA-binding 99.5 2.7E-13 5.8E-18 95.5 8.8 78 29-110 17-94 (124)
45 KOG0127 Nucleolar protein fibr 99.5 1.6E-13 3.4E-18 120.7 9.4 81 29-111 116-196 (678)
46 KOG0105 Alternative splicing f 99.5 1.8E-13 3.9E-18 105.8 7.4 80 30-113 6-85 (241)
47 smart00361 RRM_1 RNA recogniti 99.5 4.3E-13 9.3E-18 89.8 8.3 61 44-105 2-69 (70)
48 KOG0145 RNA-binding protein EL 99.5 4.6E-13 1E-17 108.5 9.6 80 29-109 277-356 (360)
49 KOG0146 RNA-binding protein ET 99.4 8.5E-14 1.8E-18 113.1 5.2 85 27-112 282-366 (371)
50 KOG0124 Polypyrimidine tract-b 99.4 9.8E-14 2.1E-18 117.0 4.8 77 30-107 113-189 (544)
51 PF13893 RRM_5: RNA recognitio 99.4 1.7E-12 3.7E-17 82.9 8.6 56 47-108 1-56 (56)
52 KOG0146 RNA-binding protein ET 99.4 4.2E-13 9.1E-18 109.1 6.6 86 29-115 18-105 (371)
53 KOG0131 Splicing factor 3b, su 99.4 5.2E-13 1.1E-17 102.9 6.4 87 27-114 93-180 (203)
54 KOG0127 Nucleolar protein fibr 99.4 1.3E-12 2.8E-17 115.0 9.5 83 29-111 291-378 (678)
55 KOG0109 RNA-binding protein LA 99.4 5.8E-13 1.3E-17 109.3 6.9 74 31-113 3-76 (346)
56 KOG0147 Transcriptional coacti 99.4 6.2E-13 1.3E-17 117.1 6.2 78 31-109 279-356 (549)
57 KOG0117 Heterogeneous nuclear 99.4 1.6E-12 3.4E-17 112.1 8.1 77 30-115 259-335 (506)
58 KOG4205 RNA-binding protein mu 99.3 2.4E-12 5.1E-17 108.9 7.9 109 4-115 72-180 (311)
59 KOG0415 Predicted peptidyl pro 99.3 5.9E-12 1.3E-16 105.9 6.8 83 27-110 236-318 (479)
60 KOG4205 RNA-binding protein mu 99.3 3.3E-12 7.1E-17 108.1 5.2 82 29-112 5-86 (311)
61 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.4E-11 5.1E-16 110.0 9.6 74 28-109 173-258 (509)
62 KOG4208 Nucleolar RNA-binding 99.3 1.9E-11 4.1E-16 96.1 7.6 82 29-111 48-130 (214)
63 KOG0123 Polyadenylate-binding 99.3 2E-11 4.4E-16 106.2 8.5 79 31-113 77-155 (369)
64 KOG4212 RNA-binding protein hn 99.2 3E-11 6.4E-16 104.2 8.2 79 30-110 44-123 (608)
65 KOG0153 Predicted RNA-binding 99.2 7.1E-11 1.5E-15 99.2 9.9 77 30-112 228-304 (377)
66 KOG4206 Spliceosomal protein s 99.2 5.8E-11 1.3E-15 94.6 8.2 81 30-114 9-93 (221)
67 KOG0109 RNA-binding protein LA 99.2 3.1E-11 6.8E-16 99.3 5.4 76 29-113 77-152 (346)
68 KOG0132 RNA polymerase II C-te 99.2 7.4E-11 1.6E-15 107.6 7.7 74 30-110 421-494 (894)
69 KOG0110 RNA-binding protein (R 99.1 6.9E-11 1.5E-15 107.0 4.9 83 30-113 613-695 (725)
70 KOG0123 Polyadenylate-binding 99.1 3.6E-10 7.8E-15 98.4 8.2 76 31-113 2-77 (369)
71 KOG4212 RNA-binding protein hn 99.1 3.1E-10 6.8E-15 98.0 7.3 75 27-107 533-607 (608)
72 KOG0124 Polypyrimidine tract-b 99.1 3.1E-10 6.7E-15 96.1 7.2 79 30-109 210-288 (544)
73 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.9E-10 1.1E-14 99.5 8.1 83 28-111 403-485 (940)
74 KOG0151 Predicted splicing reg 99.0 1.4E-09 3E-14 98.6 9.8 82 28-110 172-256 (877)
75 KOG0110 RNA-binding protein (R 99.0 1.3E-09 2.9E-14 98.8 8.5 78 31-109 516-596 (725)
76 KOG1457 RNA binding protein (c 99.0 1.3E-08 2.9E-13 81.1 12.6 87 28-115 32-122 (284)
77 KOG0226 RNA-binding proteins [ 99.0 6.4E-10 1.4E-14 90.0 4.7 81 28-109 188-268 (290)
78 KOG4454 RNA binding protein (R 98.9 4.4E-10 9.6E-15 89.2 2.7 77 28-107 7-83 (267)
79 KOG0106 Alternative splicing f 98.9 1.3E-09 2.8E-14 87.5 4.3 72 31-111 2-73 (216)
80 KOG0533 RRM motif-containing p 98.9 7.6E-09 1.7E-13 84.7 8.6 80 30-111 83-162 (243)
81 KOG4209 Splicing factor RNPS1, 98.9 2.8E-09 6E-14 87.1 5.7 81 27-109 98-178 (231)
82 KOG1548 Transcription elongati 98.9 1.5E-08 3.3E-13 85.3 9.5 82 30-113 134-223 (382)
83 KOG0116 RasGAP SH3 binding pro 98.8 6.3E-09 1.4E-13 91.4 6.9 79 30-110 288-366 (419)
84 KOG0120 Splicing factor U2AF, 98.7 1.4E-08 3.1E-13 90.4 5.7 87 28-115 287-373 (500)
85 KOG4660 Protein Mei2, essentia 98.7 1E-08 2.2E-13 90.9 3.8 74 25-104 70-143 (549)
86 KOG0147 Transcriptional coacti 98.7 8.4E-09 1.8E-13 91.3 2.3 94 19-114 168-261 (549)
87 PF04059 RRM_2: RNA recognitio 98.6 4.5E-07 9.7E-12 64.2 9.0 80 31-111 2-87 (97)
88 KOG1995 Conserved Zn-finger pr 98.4 2.4E-07 5.2E-12 78.5 4.2 84 28-112 64-155 (351)
89 KOG1190 Polypyrimidine tract-b 98.4 1.6E-06 3.5E-11 74.7 8.5 75 30-110 297-372 (492)
90 KOG4211 Splicing factor hnRNP- 98.3 2.4E-06 5.1E-11 75.2 8.5 75 30-109 10-84 (510)
91 KOG4849 mRNA cleavage factor I 98.3 7.2E-06 1.6E-10 69.6 10.9 70 31-101 81-152 (498)
92 KOG4210 Nuclear localization s 98.1 3.5E-06 7.7E-11 71.1 4.8 82 30-113 184-266 (285)
93 KOG1457 RNA binding protein (c 98.1 4.3E-06 9.3E-11 67.0 4.4 61 31-95 211-271 (284)
94 KOG0106 Alternative splicing f 98.0 3.5E-06 7.6E-11 67.8 2.8 69 30-107 99-167 (216)
95 PF11608 Limkain-b1: Limkain b 98.0 3.4E-05 7.3E-10 52.8 6.7 70 31-111 3-77 (90)
96 KOG4211 Splicing factor hnRNP- 98.0 2.6E-05 5.7E-10 68.8 7.7 78 29-109 102-180 (510)
97 COG5175 MOT2 Transcriptional r 98.0 2E-05 4.3E-10 66.7 6.6 78 30-108 114-200 (480)
98 PF08777 RRM_3: RNA binding mo 97.9 2.8E-05 6E-10 56.0 6.2 71 30-106 1-75 (105)
99 KOG4206 Spliceosomal protein s 97.9 4.8E-05 1E-09 61.0 7.9 77 27-109 143-220 (221)
100 KOG1456 Heterogeneous nuclear 97.9 8.2E-05 1.8E-09 63.8 8.7 79 28-112 285-364 (494)
101 KOG2314 Translation initiation 97.7 0.0002 4.4E-09 64.3 9.2 78 28-107 56-140 (698)
102 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00014 3E-09 45.8 5.6 52 31-89 2-53 (53)
103 KOG4307 RNA binding protein RB 97.6 0.00017 3.7E-09 66.2 7.3 76 30-107 866-943 (944)
104 KOG3152 TBP-binding protein, a 97.6 3.8E-05 8.2E-10 62.7 2.6 72 30-102 74-157 (278)
105 KOG0129 Predicted RNA-binding 97.6 0.00021 4.6E-09 63.6 7.4 64 28-91 368-432 (520)
106 KOG0129 Predicted RNA-binding 97.6 0.00027 5.7E-09 62.9 7.9 62 30-92 259-326 (520)
107 KOG0120 Splicing factor U2AF, 97.6 0.00027 5.9E-09 63.5 7.6 66 46-112 425-493 (500)
108 KOG1365 RNA-binding protein Fu 97.5 0.00057 1.2E-08 58.9 8.8 78 30-109 280-360 (508)
109 KOG0112 Large RNA-binding prot 97.5 0.00018 4E-09 67.6 6.1 83 26-115 451-535 (975)
110 KOG1548 Transcription elongati 97.4 0.00083 1.8E-08 57.2 8.0 77 30-111 265-352 (382)
111 KOG1190 Polypyrimidine tract-b 97.3 0.00073 1.6E-08 58.7 6.8 78 28-110 412-490 (492)
112 KOG1855 Predicted RNA-binding 97.3 0.00027 5.8E-09 61.6 4.1 68 28-95 229-309 (484)
113 KOG2193 IGF-II mRNA-binding pr 97.3 0.00026 5.5E-09 61.7 3.6 78 31-114 2-79 (584)
114 KOG0105 Alternative splicing f 97.3 0.0013 2.8E-08 51.6 7.1 59 30-95 115-173 (241)
115 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0028 6E-08 45.2 7.8 76 30-108 6-89 (100)
116 KOG0128 RNA-binding protein SA 97.1 0.00022 4.7E-09 66.8 1.7 82 30-113 736-817 (881)
117 KOG0128 RNA-binding protein SA 97.0 6.6E-05 1.4E-09 70.1 -2.3 66 30-95 667-732 (881)
118 KOG2202 U2 snRNP splicing fact 97.0 0.00033 7.2E-09 57.3 1.8 62 46-109 84-146 (260)
119 KOG1996 mRNA splicing factor [ 96.9 0.0038 8.2E-08 52.2 7.0 65 44-109 300-365 (378)
120 KOG1456 Heterogeneous nuclear 96.8 0.0067 1.5E-07 52.4 8.3 81 29-114 119-202 (494)
121 PF10309 DUF2414: Protein of u 96.8 0.0079 1.7E-07 38.9 6.4 55 30-92 5-62 (62)
122 PF08952 DUF1866: Domain of un 96.7 0.0093 2E-07 45.2 7.6 77 28-114 25-110 (146)
123 KOG1365 RNA-binding protein Fu 96.6 0.0064 1.4E-07 52.7 6.6 59 32-91 163-225 (508)
124 KOG0112 Large RNA-binding prot 96.4 0.0011 2.4E-08 62.5 0.9 78 29-108 371-448 (975)
125 KOG2068 MOT2 transcription fac 96.3 0.0008 1.7E-08 57.1 -0.4 79 30-109 77-161 (327)
126 KOG0115 RNA-binding protein p5 96.2 0.0062 1.3E-07 50.0 3.8 63 31-94 32-94 (275)
127 KOG2591 c-Mpl binding protein, 96.0 0.096 2.1E-06 47.6 10.9 73 27-106 172-247 (684)
128 PF15023 DUF4523: Protein of u 95.9 0.079 1.7E-06 40.0 8.4 74 27-109 83-160 (166)
129 KOG4307 RNA binding protein RB 95.9 0.006 1.3E-07 56.4 2.9 77 29-107 433-510 (944)
130 KOG2416 Acinus (induces apopto 95.9 0.0069 1.5E-07 55.1 3.2 77 28-111 442-522 (718)
131 PF08675 RNA_bind: RNA binding 95.8 0.043 9.4E-07 37.6 6.1 54 31-93 10-63 (87)
132 KOG4676 Splicing factor, argin 95.5 0.14 3.1E-06 44.6 9.5 76 30-107 7-85 (479)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.06 1.3E-06 42.3 6.1 81 29-109 6-96 (176)
134 PF04847 Calcipressin: Calcipr 95.1 0.11 2.3E-06 41.2 7.1 62 43-111 8-71 (184)
135 KOG2135 Proteins containing th 94.4 0.029 6.3E-07 49.8 2.5 74 30-111 372-446 (526)
136 KOG4210 Nuclear localization s 94.0 0.03 6.5E-07 47.4 1.7 78 29-107 87-164 (285)
137 KOG4285 Mitotic phosphoprotein 93.7 0.56 1.2E-05 39.7 8.6 67 33-108 200-267 (350)
138 PF11767 SET_assoc: Histone ly 93.4 0.52 1.1E-05 30.9 6.5 55 41-105 11-65 (66)
139 PF03880 DbpA: DbpA RNA bindin 93.4 0.69 1.5E-05 30.8 7.3 67 32-108 2-74 (74)
140 KOG2253 U1 snRNP complex, subu 92.5 0.078 1.7E-06 49.0 2.2 71 27-107 37-107 (668)
141 PF07576 BRAP2: BRCA1-associat 91.9 1.8 3.8E-05 31.4 8.2 67 31-100 14-81 (110)
142 KOG4454 RNA binding protein (R 91.5 0.078 1.7E-06 42.9 0.8 67 28-95 78-148 (267)
143 KOG4660 Protein Mei2, essentia 91.2 0.42 9.1E-06 43.4 5.2 83 31-113 389-475 (549)
144 KOG4574 RNA-binding protein (c 91.1 0.15 3.3E-06 48.4 2.5 75 30-110 298-373 (1007)
145 KOG2193 IGF-II mRNA-binding pr 86.4 0.028 6.2E-07 49.3 -5.3 74 30-108 80-154 (584)
146 KOG4410 5-formyltetrahydrofola 82.7 1.7 3.7E-05 36.6 3.7 48 30-83 330-378 (396)
147 KOG0804 Cytoplasmic Zn-finger 81.0 5.1 0.00011 35.8 6.2 68 30-100 74-142 (493)
148 KOG4019 Calcineurin-mediated s 72.1 9.1 0.0002 30.2 4.8 80 30-116 10-95 (193)
149 COG0724 RNA-binding proteins ( 68.7 8.9 0.00019 30.4 4.4 63 27-89 222-284 (306)
150 KOG4483 Uncharacterized conser 67.4 15 0.00032 32.6 5.6 55 30-91 391-446 (528)
151 KOG2318 Uncharacterized conser 66.9 28 0.00061 32.3 7.4 78 29-107 173-304 (650)
152 KOG4676 Splicing factor, argin 66.5 1.4 3E-05 38.7 -0.8 72 30-107 151-222 (479)
153 PF15513 DUF4651: Domain of un 63.3 18 0.00039 23.3 4.0 18 45-62 9-26 (62)
154 PF07530 PRE_C2HC: Associated 61.5 27 0.00058 22.9 4.8 62 45-110 2-64 (68)
155 PF07292 NID: Nmi/IFP 35 domai 57.6 17 0.00038 25.1 3.5 33 75-107 1-33 (88)
156 smart00596 PRE_C2HC PRE_C2HC d 57.3 26 0.00057 23.1 4.1 61 45-109 2-63 (69)
157 PF02714 DUF221: Domain of unk 54.5 15 0.00033 31.2 3.5 32 75-109 1-32 (325)
158 PF03468 XS: XS domain; Inter 52.9 12 0.00025 27.3 2.2 38 43-83 30-67 (116)
159 PF10567 Nab6_mRNP_bdg: RNA-re 47.4 34 0.00073 29.1 4.3 79 29-109 14-106 (309)
160 PF08206 OB_RNB: Ribonuclease 43.4 9 0.0002 24.0 0.3 38 70-109 6-44 (58)
161 KOG4008 rRNA processing protei 41.6 22 0.00048 29.3 2.3 35 27-61 37-71 (261)
162 PF09707 Cas_Cas2CT1978: CRISP 41.4 70 0.0015 22.0 4.4 48 30-80 25-72 (86)
163 PF11411 DNA_ligase_IV: DNA li 39.6 25 0.00054 20.1 1.7 17 40-56 19-35 (36)
164 KOG2295 C2H2 Zn-finger protein 34.8 5.6 0.00012 36.6 -2.3 67 29-95 230-296 (648)
165 PRK01178 rps24e 30S ribosomal 33.4 97 0.0021 21.9 4.3 46 41-87 30-80 (99)
166 KOG0226 RNA-binding proteins [ 33.1 15 0.00032 30.6 0.1 76 30-107 96-174 (290)
167 KOG3424 40S ribosomal protein 33.0 1.7E+02 0.0038 21.5 5.5 46 40-86 33-83 (132)
168 KOG2891 Surface glycoprotein [ 32.8 68 0.0015 27.2 3.9 35 30-64 149-195 (445)
169 PRK11558 putative ssRNA endonu 31.4 96 0.0021 21.9 3.9 50 30-82 27-76 (97)
170 PF08442 ATP-grasp_2: ATP-gras 30.6 1.2E+02 0.0027 24.2 5.0 54 42-99 25-81 (202)
171 KOG0156 Cytochrome P450 CYP2 s 29.4 1.1E+02 0.0024 28.0 5.0 59 34-103 36-97 (489)
172 PRK11230 glycolate oxidase sub 27.9 1.8E+02 0.0039 26.7 6.2 63 30-93 189-255 (499)
173 KOG4365 Uncharacterized conser 26.0 10 0.00022 34.0 -2.1 77 31-109 4-80 (572)
174 PF03439 Spt5-NGN: Early trans 21.7 1.1E+02 0.0024 20.6 2.8 35 56-95 33-67 (84)
175 PF13046 DUF3906: Protein of u 21.6 98 0.0021 20.1 2.3 34 42-77 30-63 (64)
176 TIGR01873 cas_CT1978 CRISPR-as 21.6 1.9E+02 0.0041 20.0 3.9 49 30-81 25-74 (87)
177 PF11823 DUF3343: Protein of u 21.4 1.3E+02 0.0028 19.5 3.0 23 73-95 2-24 (73)
178 KOG1295 Nonsense-mediated deca 21.3 1.5E+02 0.0033 26.1 4.2 73 30-102 7-82 (376)
179 KOG0635 Adenosine 5'-phosphosu 21.1 1.6E+02 0.0034 23.0 3.7 50 28-77 29-81 (207)
180 COG5193 LHP1 La protein, small 20.9 47 0.001 29.5 1.0 61 30-90 174-244 (438)
181 KOG0918 Selenium-binding prote 20.7 76 0.0016 28.4 2.2 65 22-87 392-458 (476)
182 PF08544 GHMP_kinases_C: GHMP 20.6 2.5E+02 0.0054 18.1 5.4 43 45-93 37-80 (85)
183 PF05189 RTC_insert: RNA 3'-te 20.5 2.8E+02 0.006 19.2 4.8 49 32-80 12-65 (103)
184 PF15407 Spo7_2_N: Sporulation 20.4 41 0.0009 22.0 0.4 22 27-48 24-45 (67)
185 COG0030 KsgA Dimethyladenosine 20.1 92 0.002 26.1 2.5 35 30-64 95-129 (259)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.3e-20 Score=143.62 Aligned_cols=84 Identities=27% Similarity=0.444 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...+++|||+||+++++|++|+++|++||.|.+|.|+.|+.|++++|||||+|.+.++|++||+.||+. .|+|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~-~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK-ELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
|+...
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98643
No 2
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=1.9e-19 Score=143.26 Aligned_cols=79 Identities=23% Similarity=0.347 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
-++||||||+|++..++|+++|++||+|++..|+.|+.||++||||||+|.+.++|++|++..|- .|+||+..|.+|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p--iIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP--IIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC--cccccccccchhh
Confidence 47899999999999999999999999999999999999999999999999999999999998875 6999999998876
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.78 E-value=1.4e-18 Score=150.09 Aligned_cols=81 Identities=30% Similarity=0.460 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+.+|||+|||+++++++|+++|++||.|.+++|++|..||.+||||||+|.+.++|.+||..|||. .|+|+.|+|.|+.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~-~~~gr~i~V~~~~ 347 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGY-TLGNRVLQVSFKT 347 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEEcc
Confidence 457999999999999999999999999999999999999999999999999999999999999998 9999999999976
Q ss_pred CC
Q 038096 110 QD 111 (211)
Q Consensus 110 ~~ 111 (211)
.+
T Consensus 348 ~~ 349 (352)
T TIGR01661 348 NK 349 (352)
T ss_pred CC
Confidence 54
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.77 E-value=2.5e-18 Score=148.41 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=79.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++|||+|||.+++|++|+++|++||+|.+|+|++|+.+|+++|||||+|.+.++|++||+.|||. .|.|+.|+|.|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~-~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGL-RLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccE-EECCeeEEEEee
Confidence 3689999999999999999999999999999999999999999999999999999999999999998 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
++..
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 7654
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=3e-18 Score=147.77 Aligned_cols=84 Identities=32% Similarity=0.498 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||++++|++|+++|+.||.|++|+|++|+.|++++|||||+|.++++|++||+.||+. .|.+++|+|.+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~-~l~gr~i~V~~ 183 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGI-TVRNKRLKVSY 183 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCC-ccCCceeeeec
Confidence 45899999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+++..
T Consensus 184 a~p~~ 188 (346)
T TIGR01659 184 ARPGG 188 (346)
T ss_pred ccccc
Confidence 87643
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=2e-17 Score=109.80 Aligned_cols=70 Identities=37% Similarity=0.644 Sum_probs=66.8
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 33 lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|++.++|. .++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~-~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGK-KINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCC-EECccCcC
Confidence 799999999999999999999999999999987 56899999999999999999999999998 99999885
No 7
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2e-17 Score=132.40 Aligned_cols=85 Identities=33% Similarity=0.468 Sum_probs=80.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 26 ~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
...+.++|-|.||+.+++|++|+++|..||.|.++.|.+|+.||.+||||||.|.++++|++||+.|||. -++.-.|+|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~-gyd~LILrv 263 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY-GYDNLILRV 263 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc-ccceEEEEE
Confidence 3457899999999999999999999999999999999999999999999999999999999999999997 888889999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
+|+++.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999764
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=7.3e-18 Score=144.06 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCccccccccccCCCC--CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeC
Q 038096 3 PSPKHSFVPNDVVSRNKRQIMSGNS--NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYE 80 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~ 80 (211)
.|+++.+.+..+.+.+.|..+.|.. .+.++||||.|+..++|+|++++|++||.|++|.|++|.+ +.+||||||.|.
T Consensus 95 Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fs 173 (510)
T KOG0144|consen 95 ALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFS 173 (510)
T ss_pred HhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEe
Confidence 4678888999999999887666654 3589999999999999999999999999999999999986 999999999999
Q ss_pred CHHHHHHHHHHcCCCeeeCCe--EEEEEecCCCccCC
Q 038096 81 SEEIGHYAIKLFSGIVTLYNR--TLRFALSGQDKNAQ 115 (211)
Q Consensus 81 ~~~~A~~Ai~~lng~~~i~gr--~l~v~~a~~~~~~~ 115 (211)
+++.|..||+.|||...+.|. +|.|+||+.++.+.
T Consensus 174 tke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred hHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 999999999999999888885 89999999887764
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=7.1e-17 Score=139.25 Aligned_cols=85 Identities=28% Similarity=0.440 Sum_probs=78.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC--eEEEEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN--RTLRFA 106 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l~v~ 106 (211)
..++|||+|||++++|++|+++|++||.|+.|+|++|+.|++++|||||+|.+.++|++||+.||+. .+.+ +.|+|.
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~~~g~~~~l~V~ 270 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV-IPEGGSQPLTVR 270 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-ccCCCceeEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999998 7766 689999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
+++.....
T Consensus 271 ~a~~~~~~ 278 (346)
T TIGR01659 271 LAEEHGKA 278 (346)
T ss_pred ECCccccc
Confidence 99865443
No 10
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.4e-16 Score=121.72 Aligned_cols=79 Identities=28% Similarity=0.542 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
-.++||||||+..+++.||+..|..||.|..|+|... +.|||||+|++..+|+.|+..|+|+ .|+|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~-~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGK-DICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCc-cccCceEEEEee
Confidence 3799999999999999999999999999999999764 4699999999999999999999999 999999999998
Q ss_pred CCCcc
Q 038096 109 GQDKN 113 (211)
Q Consensus 109 ~~~~~ 113 (211)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76544
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=116.35 Aligned_cols=81 Identities=30% Similarity=0.579 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.++++||||||.+.++|++|.++|++.|+|..|.+-.|+.+..+-|||||+|.+.++|+.|++.++|. .++.+.|++.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt-rLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT-RLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC-cccccceeeec
Confidence 34899999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 12
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.8e-17 Score=128.52 Aligned_cols=93 Identities=34% Similarity=0.554 Sum_probs=85.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++||||+|..+++|..|...|..||.|.+|.|+.|-+++++||||||+|...|+|.+||..||+. +|.||.|+|.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes-EL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES-ELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh-hhcceeEEEee
Confidence 34789999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCccCCCCCccc
Q 038096 108 SGQDKNAQNSSMTT 121 (211)
Q Consensus 108 a~~~~~~~~~~~~~ 121 (211)
|++.+-+....-++
T Consensus 87 AkP~kikegsqkPv 100 (298)
T KOG0111|consen 87 AKPEKIKEGSQKPV 100 (298)
T ss_pred cCCccccCCCCCCc
Confidence 99887665444344
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=4.4e-16 Score=141.77 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+||+.++++++|+++|+.||.|.+|+|.+|+.+++++|||||+|.+.++|.+||+.||+. .|+|+.|+|.++.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~-elgGr~LrV~kAi 282 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLF-DLGGQYLRVGKCV 282 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEecC
Confidence 579999999999999999999999999999999999999999999999999999999999999998 9999999999987
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
...
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 543
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=2.7e-16 Score=143.11 Aligned_cols=80 Identities=29% Similarity=0.494 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++||||||++++++++|+++|.+||.|.+|.|++|+.||+++|||||+|.+.++|++||+.|||. .|+|+.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~-~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCe-EEecceeeeccc
Confidence 3689999999999999999999999999999999999999999999999999999999999999998 999999999864
Q ss_pred C
Q 038096 109 G 109 (211)
Q Consensus 109 ~ 109 (211)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=5.5e-16 Score=103.39 Aligned_cols=70 Identities=36% Similarity=0.591 Sum_probs=65.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 33 lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
|||+|||+++++++|+++|+.||.|..+.+..+++ +..+|+|||+|.+.++|.+|++.+++. .++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~-~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGK-EIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCc-EECCEEcC
Confidence 79999999999999999999999999999999987 899999999999999999999999987 99999885
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=9.5e-16 Score=125.56 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+||++.++|++|+++|+.||.|.+|.|+.|.. .+|||||+|.+.++|+.||. |||. .|+|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~-~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGA-TIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCC-eeCCceEEEEecc
Confidence 58999999999999999999999999999999998863 57999999999999999995 8998 9999999999975
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=1.2e-15 Score=139.84 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=76.0
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCCC
Q 038096 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQD 111 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~~ 111 (211)
+|||||||.+++|++|+++|++||.|.+|+|.+|+.|++++|||||+|.+.++|++||+.+|+. .|.|+.|+|.|+..+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~-~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFK-RLGGKPIRIMWSQRD 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeeEEeeccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999998 899999999998644
No 18
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.64 E-value=3.7e-16 Score=122.44 Aligned_cols=83 Identities=29% Similarity=0.486 Sum_probs=78.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
-..|-|-||.+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|.+..+|+.|++.|+|. .|+|+.|.|+.|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~-~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA-VLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce-eeccceeeehhhh
Confidence 577999999999999999999999999999999999999999999999999999999999999998 9999999999887
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
-...
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 5544
No 19
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=2e-15 Score=125.34 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
++..++|+|.|||+...|-||+.+|++||.|.+|.|+.+. .-+||||||+|++.++|++|-++|+|. .+.||+|.|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt-~VEGRkIEVn 169 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGT-VVEGRKIEVN 169 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcc-eeeceEEEEe
Confidence 3456899999999999999999999999999999999875 468999999999999999999999999 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
.|...
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 87643
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.63 E-value=2.4e-15 Score=135.93 Aligned_cols=83 Identities=25% Similarity=0.370 Sum_probs=78.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||||||+.+++++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..||+.|||. .|+|+.|.|.+|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~-~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK-DTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999999999999999999998 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 373 ~~~~ 376 (509)
T TIGR01642 373 CVGA 376 (509)
T ss_pred ccCC
Confidence 6543
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=131.21 Aligned_cols=88 Identities=23% Similarity=0.390 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee-CCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL-YNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i-~gr~l~v~ 106 (211)
+-+|.||||.||.++.|++|..+|++.|+|-+++|++|+.+|.+||||||+|.+.++|++||+.||+. +| .|+.|.|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~-Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY-EIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc-cccCCCEeEEE
Confidence 44899999999999999999999999999999999999999999999999999999999999999998 55 68999998
Q ss_pred ecCCCccCCC
Q 038096 107 LSGQDKNAQN 116 (211)
Q Consensus 107 ~a~~~~~~~~ 116 (211)
.+..+.....
T Consensus 160 ~Svan~RLFi 169 (506)
T KOG0117|consen 160 VSVANCRLFI 169 (506)
T ss_pred EeeecceeEe
Confidence 8765544433
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.2e-16 Score=125.52 Aligned_cols=82 Identities=28% Similarity=0.473 Sum_probs=78.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
--+|||-|..+++-++|++.|..||+|.+++|++|..|+++||||||.|-+.++|+.||..|||. .|++|.|+-.||..
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq-WlG~R~IRTNWATR 141 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ-WLGRRTIRTNWATR 141 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe-eeccceeecccccc
Confidence 45999999999999999999999999999999999999999999999999999999999999999 89999999999977
Q ss_pred Ccc
Q 038096 111 DKN 113 (211)
Q Consensus 111 ~~~ 113 (211)
+..
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 653
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.63 E-value=6.9e-16 Score=118.68 Aligned_cols=83 Identities=46% Similarity=0.832 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 26 ~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
..+...+||||||+..++++.|.++|-+.|+|+.+.|++|+.|+..+||||++|.++++|+-||+.||. |.+.|++|+|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~-VkLYgrpIrv 83 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM-VKLYGRPIRV 83 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH-HHhcCceeEE
Confidence 345689999999999999999999999999999999999999999999999999999999999999996 5999999999
Q ss_pred EecC
Q 038096 106 ALSG 109 (211)
Q Consensus 106 ~~a~ 109 (211)
..+.
T Consensus 84 ~kas 87 (203)
T KOG0131|consen 84 NKAS 87 (203)
T ss_pred Eecc
Confidence 9987
No 24
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.8e-15 Score=124.27 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
++-++|||+-|+.+++|..|+..|+.||.|+.|.|++|+.||+++|||||+|+++.+..+|.+..+|. .|+|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~-~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI-KIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc-eecCcEEEEEe
Confidence 56799999999999999999999999999999999999999999999999999999999999999998 99999999987
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 43
No 25
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=4.9e-17 Score=124.98 Aligned_cols=79 Identities=34% Similarity=0.567 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
++.-|||||||+++||.||..+|++||+|+.|.+++|+.||+++||||+.|++..+..-|+.-|||. .|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi-ki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI-KILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc-eecceeEEeeec
Confidence 4677999999999999999999999999999999999999999999999999999999999999997 999999999764
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.4e-15 Score=122.92 Aligned_cols=100 Identities=20% Similarity=0.373 Sum_probs=88.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|.|.-||..+++|||+.+|...|+|++|++++|+-||.+.|||||.|.++++|++||..|||. .+..++|+|++|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGL-rLQ~KTIKVSyA 118 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGL-RLQNKTIKVSYA 118 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcce-eeccceEEEEec
Confidence 3678999999999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred CCCccC-CCCCcccCCCCCCCC
Q 038096 109 GQDKNA-QNSSMTTTPLSSRKS 129 (211)
Q Consensus 109 ~~~~~~-~~~~~~~~p~~~~~~ 129 (211)
++.... +..+.++...+..+.
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMt 140 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMT 140 (360)
T ss_pred cCChhhhcccceEEecCCccch
Confidence 877654 344555555554443
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=2.7e-15 Score=134.01 Aligned_cols=80 Identities=28% Similarity=0.534 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+|++.|||. .|.|+.|+|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~-~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGF-ELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCc-EECCEEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999999997 9999999999986
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 28
>PLN03213 repressor of silencing 3; Provisional
Probab=99.62 E-value=1.7e-15 Score=131.72 Aligned_cols=77 Identities=19% Similarity=0.355 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCH--HHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE--EIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~--~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
+.+||||||++.+++++|+.+|+.||.|.+|.|++ +|| ||||||+|.+. .++.+||..|||. .+.|+.|+|..
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGA-EWKGR~LKVNK 84 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGC-VWKGGRLRLEK 84 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCC-eecCceeEEee
Confidence 68999999999999999999999999999999994 567 89999999987 7899999999999 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8753
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=2.6e-15 Score=137.56 Aligned_cols=84 Identities=26% Similarity=0.477 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..+++|||+||++++++++|+++|++||.|.+|+|+.| .+|.++|||||+|.+.++|.+|+..|||. .++|+.|.|.+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~-~~~gk~l~V~~ 360 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGR-MLGGKPLYVAL 360 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCC-eeCCceeEEEe
Confidence 34788999999999999999999999999999999999 57999999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
|..+..
T Consensus 361 a~~k~~ 366 (562)
T TIGR01628 361 AQRKEQ 366 (562)
T ss_pred ccCcHH
Confidence 986543
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.1e-14 Score=118.27 Aligned_cols=82 Identities=21% Similarity=0.426 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 25 GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 25 ~~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
..++++|+|||||++..++|++|++.|+.||.|.+|++.+|+ ||+||.|++.|.|..||..+|+. +|+|..++
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNnt-ei~G~~Vk 231 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNT-EIGGQLVR 231 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCc-eeCceEEE
Confidence 456889999999999999999999999999999999998875 99999999999999999999999 99999999
Q ss_pred EEecCCCcc
Q 038096 105 FALSGQDKN 113 (211)
Q Consensus 105 v~~a~~~~~ 113 (211)
|.|.+....
T Consensus 232 CsWGKe~~~ 240 (321)
T KOG0148|consen 232 CSWGKEGDD 240 (321)
T ss_pred EeccccCCC
Confidence 999875443
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.62 E-value=2.3e-15 Score=136.73 Aligned_cols=81 Identities=26% Similarity=0.497 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee-CCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL-YNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i-~gr~l~v~ 106 (211)
...++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+. .| .|+.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~-~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNY-EIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCC-eecCCcccccc
Confidence 34799999999999999999999999999999999999 78999999999999999999999999998 66 47888777
Q ss_pred ecCC
Q 038096 107 LSGQ 110 (211)
Q Consensus 107 ~a~~ 110 (211)
++..
T Consensus 134 ~S~~ 137 (578)
T TIGR01648 134 ISVD 137 (578)
T ss_pred cccc
Confidence 6643
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=6.6e-15 Score=131.50 Aligned_cols=82 Identities=28% Similarity=0.438 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++|||+|||..+++++|+++|++||.|..|.|++|+.+++++|||||+|.+.++|++||. |+|. .+.|+.|.|.++
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~-~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQ-MLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCC-EECCeeeEEeec
Confidence 47899999999999999999999999999999999999999999999999999999999997 7898 899999999887
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 166 ~~~~ 169 (457)
T TIGR01622 166 QAEK 169 (457)
T ss_pred chhh
Confidence 5443
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.3e-15 Score=110.62 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 26 ~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.|.+++.|||.++...++|+++.+.|..||+|+.+.+..|+.||-.||||+|+|++.++|++||..+||. .|.|..|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~-~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA-ELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch-hhhCCceeE
Confidence 3556889999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred EecC
Q 038096 106 ALSG 109 (211)
Q Consensus 106 ~~a~ 109 (211)
.|+-
T Consensus 147 Dw~F 150 (170)
T KOG0130|consen 147 DWCF 150 (170)
T ss_pred EEEE
Confidence 9974
No 34
>smart00362 RRM_2 RNA recognition motif.
Probab=99.58 E-value=1.9e-14 Score=94.55 Aligned_cols=72 Identities=40% Similarity=0.656 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
+|||+|||..+++++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|++|++.+++. .+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~-~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGT-KLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCc-EECCEEEeeC
Confidence 58999999999999999999999999999998876 778999999999999999999999997 8999998863
No 35
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.58 E-value=6.9e-15 Score=129.25 Aligned_cols=83 Identities=35% Similarity=0.587 Sum_probs=79.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
+.|||||+|++++|++|.++|+..|.|.+++++.|++||+.+||||++|.+.++|+.|++.|||. ++.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~-~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA-EFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc-ccCCceEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999998 99999999999876
Q ss_pred CccC
Q 038096 111 DKNA 114 (211)
Q Consensus 111 ~~~~ 114 (211)
.+.+
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6553
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.58 E-value=1.3e-14 Score=118.49 Aligned_cols=80 Identities=38% Similarity=0.564 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++||||||++++++++|+++|..||.|..+.+..|+.++.++|||||+|.+.++|..|++.++|. .|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~-~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK-ELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC-eECCceeEeeccc
Confidence 599999999999999999999999999999999999989999999999999999999999999998 9999999999965
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.56 E-value=2.4e-14 Score=93.67 Aligned_cols=71 Identities=39% Similarity=0.634 Sum_probs=66.8
Q ss_pred EcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 35 IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 35 VgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
|+|||..+++++|+++|.+||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++. .++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~-~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK-ELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC-eeCCcEEEeC
Confidence 6899999999999999999999999999998888999999999999999999999999987 8999998873
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.56 E-value=2.8e-14 Score=115.34 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+.+|||+||++.++|++|+++|+.||.|.+|.|++|. ..+|||||+|.++++|+.|+ .|+|. .|.++.|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa-~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGA-TIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCC-eeCCceEEEEeC
Confidence 47899999999999999999999999999999999984 45689999999999999999 58998 999999998775
Q ss_pred C
Q 038096 109 G 109 (211)
Q Consensus 109 ~ 109 (211)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=2.2e-14 Score=122.98 Aligned_cols=87 Identities=21% Similarity=0.399 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe--EEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR--TLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr--~l~v 105 (211)
.+.-++|||.+|..++|.||+++|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+..|++...|-|- .|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 34678999999999999999999999999999999999999999999999999999999999999888677774 8899
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
++|+.++++
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 998866655
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.51 E-value=9.7e-14 Score=125.04 Aligned_cols=78 Identities=24% Similarity=0.412 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDE-KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~-~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
+++++|||+||++ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|+.||..|||. .|.|+.|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~-~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGV-KLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEE
Confidence 4578999999997 69999999999999999999998864 599999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=1.1e-13 Score=125.83 Aligned_cols=75 Identities=21% Similarity=0.292 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcC--CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQA--GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~--G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.++|||+||++++++++|+++|++| |.|++|.+++ +||||+|.+.++|++||+.||+. +|+|+.|+|.|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~-~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGK-ELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 5789999999999999999999999 9999997753 69999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
|++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987543
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.51 E-value=2.5e-13 Score=89.62 Aligned_cols=74 Identities=41% Similarity=0.650 Sum_probs=68.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++. .++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~-~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGK-ELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEeC
Confidence 4899999999999999999999999999999987764 77899999999999999999999998 89999998864
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=2e-13 Score=123.01 Aligned_cols=75 Identities=27% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc--CCCeeeCCeEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF--SGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l--ng~~~i~gr~l~v~~ 107 (211)
++.|||+|||++++|++|+++|++||.|.+|.|+++ +|||||+|.+.++|++||+.+ ++. .|+|+.|.|.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~-~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPI-YIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCc-eEcCeEEEEEe
Confidence 689999999999999999999999999999999864 489999999999999999874 676 89999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8643
No 44
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=2.7e-13 Score=95.51 Aligned_cols=78 Identities=29% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.++.|||.|||+++|.++..++|.+||.|..|+|-.+++ .+|-|||.|++..+|.+|++.|+|. .++++-|.|-+-
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~-n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGY-NVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhccc-ccCCceEEEEec
Confidence 378899999999999999999999999999999987654 5799999999999999999999998 999999998875
Q ss_pred CC
Q 038096 109 GQ 110 (211)
Q Consensus 109 ~~ 110 (211)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 43
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.6e-13 Score=120.74 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++|+|.||||.+.+.+|+.+|+.||.|.+|.|++..+++.+ |||||+|....+|..||+.+|+. +|+||+|.|.||
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~-~i~gR~VAVDWA 193 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGN-KIDGRPVAVDWA 193 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCc-eecCceeEEeee
Confidence 3789999999999999999999999999999999988875555 99999999999999999999998 999999999998
Q ss_pred CCC
Q 038096 109 GQD 111 (211)
Q Consensus 109 ~~~ 111 (211)
-.+
T Consensus 194 V~K 196 (678)
T KOG0127|consen 194 VDK 196 (678)
T ss_pred ccc
Confidence 654
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.8e-13 Score=105.78 Aligned_cols=80 Identities=25% Similarity=0.421 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+++|||||||.++.|.+|+++|.+||.|.+|.|..- -....||||+|++..+|+.||..-+|. -++|..|+|++++
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGY-dydg~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGY-DYDGCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhccccc-ccCcceEEEEecc
Confidence 799999999999999999999999999999988543 234689999999999999999999998 9999999999988
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
....
T Consensus 82 ggr~ 85 (241)
T KOG0105|consen 82 GGRS 85 (241)
T ss_pred CCCc
Confidence 6653
No 47
>smart00361 RRM_1 RNA recognition motif.
Probab=99.46 E-value=4.3e-13 Score=89.78 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=55.9
Q ss_pred HHHHHHHHh----cCCCeEEEE-EccCCCC--CCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 44 ERVLYDILI----QAGRVVDLY-IPRDKET--DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 44 e~~L~~~F~----~~G~i~~v~-i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
+++|+++|+ .||.|.++. |..++.+ +.++|||||+|.+.++|.+|++.|||. .++|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~-~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR-YFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEe
Confidence 678999998 999999995 7777766 899999999999999999999999999 999999986
No 48
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=4.6e-13 Score=108.49 Aligned_cols=80 Identities=28% Similarity=0.460 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+++|||=||..+++|..|.++|..||.|..++|++|..|.+.||||||++.+-++|..||..|||. .++++.|.|.+.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy-~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY-RLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc-cccceEEEEEEe
Confidence 3789999999999999999999999999999999999999999999999999999999999999998 999999999985
Q ss_pred C
Q 038096 109 G 109 (211)
Q Consensus 109 ~ 109 (211)
.
T Consensus 356 t 356 (360)
T KOG0145|consen 356 T 356 (360)
T ss_pred c
Confidence 3
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.5e-14 Score=113.11 Aligned_cols=85 Identities=22% Similarity=0.469 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
-+++|+|||=.||.+..+.||-.+|-.||.|++.++..|+.|+.+|.||||.|.+..+|++||..|||. .|+-++|+|.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF-QIGMKRLKVQ 360 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF-QIGMKRLKVQ 360 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcch-hhhhhhhhhh
Confidence 367999999999999999999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
..+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 876654
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.8e-14 Score=117.01 Aligned_cols=77 Identities=30% Similarity=0.517 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
-|+||||.+.+++.|+.|+..|..||.|++|.+-+|..|+++||||||+|+-+|.|+-|++.|||. +++||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccCccccccC
Confidence 489999999999999999999999999999999999999999999999999999999999999998 99999999974
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.7e-12 Score=82.88 Aligned_cols=56 Identities=34% Similarity=0.574 Sum_probs=50.9
Q ss_pred HHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 47 LYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 47 L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
|+++|++||.|.++.+..+. +++|||+|.+.++|+.|++.|||. .++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~-~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGR-QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTS-EETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEEC
Confidence 68899999999999997654 699999999999999999999998 899999999986
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.2e-13 Score=109.11 Aligned_cols=86 Identities=21% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC--eEEEEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN--RTLRFA 106 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l~v~ 106 (211)
+.++||||.|...-.|||++.+|..||.|.+|.+++..+ |.+||+|||.|.+..+|++||..|+|...+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 689999999999999999999999999999999999886 99999999999999999999999999866666 479999
Q ss_pred ecCCCccCC
Q 038096 107 LSGQDKNAQ 115 (211)
Q Consensus 107 ~a~~~~~~~ 115 (211)
+++.++++.
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 999888764
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.40 E-value=5.2e-13 Score=102.89 Aligned_cols=87 Identities=34% Similarity=0.596 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEE-EEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v-~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.+.+.+||||||.++++|..|.+.|+.||.|... .|++|..||.++|||||.|.+.+.+.+|++.+||. .++.++|.|
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq-~l~nr~itv 171 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQ-YLCNRPITV 171 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccc-hhcCCceEE
Confidence 3557899999999999999999999999999774 89999999999999999999999999999999998 899999999
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
.++..+...
T Consensus 172 ~ya~k~~~k 180 (203)
T KOG0131|consen 172 SYAFKKDTK 180 (203)
T ss_pred EEEEecCCC
Confidence 998654443
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.3e-12 Score=115.03 Aligned_cols=83 Identities=29% Similarity=0.394 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc-----CCCeeeCCeEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF-----SGIVTLYNRTL 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l-----ng~~~i~gr~l 103 (211)
.+.+|||.|||++++|++|.+.|++||.|..+.|+.++.|+.++|.|||.|.+..+|+.||... .|.+.|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 4689999999999999999999999999999999999999999999999999999999999876 34368999999
Q ss_pred EEEecCCC
Q 038096 104 RFALSGQD 111 (211)
Q Consensus 104 ~v~~a~~~ 111 (211)
+|..|-..
T Consensus 371 kv~~Av~R 378 (678)
T KOG0127|consen 371 KVTLAVTR 378 (678)
T ss_pred eeeeccch
Confidence 99887543
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=5.8e-13 Score=109.32 Aligned_cols=74 Identities=26% Similarity=0.425 Sum_probs=69.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
.+|||||||..+++.+|+.+|++||+|++|+|++ .||||..++...|+.||..|+|. .|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK--------NYgFVHiEdktaaedairNLhgY-tLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK--------NYGFVHIEDKTAAEDAIRNLHGY-TLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec--------ccceEEeecccccHHHHhhcccc-eecceEEEEEeccc
Confidence 4799999999999999999999999999999987 59999999999999999999998 99999999999877
Q ss_pred Ccc
Q 038096 111 DKN 113 (211)
Q Consensus 111 ~~~ 113 (211)
+.+
T Consensus 74 Ksk 76 (346)
T KOG0109|consen 74 KSK 76 (346)
T ss_pred cCC
Confidence 633
No 56
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.38 E-value=6.2e-13 Score=117.08 Aligned_cols=78 Identities=26% Similarity=0.536 Sum_probs=73.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
..||||||.++++|++|+.+|+.||.|..|.+.+|.+||.++|||||+|.+.++|.+|++.|||. +|-|+.|+|..-.
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf-elAGr~ikV~~v~ 356 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGF-ELAGRLIKVSVVT 356 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccc-eecCceEEEEEee
Confidence 34999999999999999999999999999999999999999999999999999999999999995 9999999987643
No 57
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.6e-12 Score=112.12 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
-+.|||.||+.++||+.|+++|.+||.|.+|+.++ .||||.|.++++|.+|++.+||+ +|+|..|.|.+|+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r--------DYaFVHf~eR~davkAm~~~ngk-eldG~~iEvtLAK 329 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR--------DYAFVHFAEREDAVKAMKETNGK-ELDGSPIEVTLAK 329 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeeccc--------ceeEEeecchHHHHHHHHHhcCc-eecCceEEEEecC
Confidence 46799999999999999999999999999998775 49999999999999999999999 9999999999999
Q ss_pred CCccCC
Q 038096 110 QDKNAQ 115 (211)
Q Consensus 110 ~~~~~~ 115 (211)
+..+.+
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 765543
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.35 E-value=2.4e-12 Score=108.93 Aligned_cols=109 Identities=23% Similarity=0.312 Sum_probs=94.0
Q ss_pred CCCCCCCCCCccccccccccCCCCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHH
Q 038096 4 SPKHSFVPNDVVSRNKRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83 (211)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~ 83 (211)
+....++++++.+++........ ....+||||+|+.++++++|++.|.+||.|..+.++.|..+.+.+||+||+|.+++
T Consensus 72 ~dgr~ve~k~av~r~~~~~~~~~-~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 72 LDGRSVEPKRAVSREDQTKVGRH-LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred cCCccccceeccCcccccccccc-cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc
Confidence 34557899999999888665544 35789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeCCeEEEEEecCCCccCC
Q 038096 84 IGHYAIKLFSGIVTLYNRTLRFALSGQDKNAQ 115 (211)
Q Consensus 84 ~A~~Ai~~lng~~~i~gr~l~v~~a~~~~~~~ 115 (211)
.+.+++..- - ..|+|+.+.|..|.++....
T Consensus 151 sVdkv~~~~-f-~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 151 SVDKVTLQK-F-HDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ccceecccc-e-eeecCceeeEeeccchhhcc
Confidence 999998652 2 48999999999998765544
No 59
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.9e-12 Score=105.93 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.++.+.|||--|.+-+++++|+-+|+.||.|..|.+++|..||.+..||||+|++.+++++|.-.|++. .|++++|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv-LIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV-LIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce-eeccceEEee
Confidence 477899999999999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred ecCC
Q 038096 107 LSGQ 110 (211)
Q Consensus 107 ~a~~ 110 (211)
++..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8754
No 60
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.29 E-value=3.3e-12 Score=108.09 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++||||+|+|+++++.|++.|.+||+|.+|.+++|+.|++++||+||+|.+.+...++|..-.. .|+|+.|.+..|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h--~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTH--KLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccc--ccCCccccceec
Confidence 589999999999999999999999999999999999999999999999999999999999877554 699999888776
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
.+..
T Consensus 83 v~r~ 86 (311)
T KOG4205|consen 83 VSRE 86 (311)
T ss_pred cCcc
Confidence 5443
No 61
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.26 E-value=2.4e-11 Score=109.98 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcC------------CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQA------------GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~------------G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
...++|||||||+.+++++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..||. |+|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 447899999999999999999999974 34444554 4557999999999999999995 8997
Q ss_pred eeeCCeEEEEEecC
Q 038096 96 VTLYNRTLRFALSG 109 (211)
Q Consensus 96 ~~i~gr~l~v~~a~ 109 (211)
.|.|+.|+|....
T Consensus 246 -~~~g~~l~v~r~~ 258 (509)
T TIGR01642 246 -IYSNVFLKIRRPH 258 (509)
T ss_pred -EeeCceeEecCcc
Confidence 9999999997654
No 62
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.26 E-value=1.9e-11 Score=96.08 Aligned_cols=82 Identities=27% Similarity=0.422 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC-CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQA-GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~-G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...-+||+.+|.-+.+.++..+|.++ |.+..+++-+++.||.++|||||+|++.+.|.-|.+.||+. .+.++.|.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY-Ll~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY-LLMEHLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh-hhhhheeeeEE
Confidence 35668999999999999999999988 78888899999999999999999999999999999999998 89999999988
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
-.++
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7665
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2e-11 Score=106.21 Aligned_cols=79 Identities=30% Similarity=0.582 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
..|||.||+.+++.++|.++|+.||.|++|++.+|.. | ++|| ||+|+++++|.+||+.+||. .+.|++|.|.....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~-ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGM-LLNGKKIYVGLFER 152 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCc-ccCCCeeEEeeccc
Confidence 3399999999999999999999999999999999986 5 9999 99999999999999999998 89999999988765
Q ss_pred Ccc
Q 038096 111 DKN 113 (211)
Q Consensus 111 ~~~ 113 (211)
+..
T Consensus 153 ~~e 155 (369)
T KOG0123|consen 153 KEE 155 (369)
T ss_pred hhh
Confidence 544
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.23 E-value=3e-11 Score=104.18 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHH-hcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVYIGNLDEKVNERVLYDIL-IQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F-~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+.+||.|||+++.|.+|+++| ++.|+|+.|.++.|.. |++||+|.|+|+++|.+++|++.||.. .+.||.|+|+-.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~-~~~GR~l~vKEd 121 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKY-EVNGRELVVKED 121 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhc-cccCceEEEecc
Confidence 4569999999999999999999 4799999999999975 999999999999999999999999997 999999999875
Q ss_pred CC
Q 038096 109 GQ 110 (211)
Q Consensus 109 ~~ 110 (211)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 44
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=7.1e-11 Score=99.17 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++||||+|...++|.+|+++|.+||+|+++.+...+ ++|||+|.+.++|+.|.+..-..+.|+|++|+|.|++
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 6789999999999999999999999999999987643 7999999999999999866655669999999999998
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
+.+
T Consensus 302 ~~~ 304 (377)
T KOG0153|consen 302 PKQ 304 (377)
T ss_pred Ccc
Confidence 843
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.21 E-value=5.8e-11 Score=94.60 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=73.7
Q ss_pred CCeEEEcCCCCCCcHHHHHH----HHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 30 GCNVYIGNLDEKVNERVLYD----ILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~----~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
..+|||.||+..+..++|+. +|++||.|.+|...+ |.+.||-|||.|.+.+.|..|+..|+|. .+.|+.+++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gf-pFygK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGF-PFYGKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCC-cccCchhhe
Confidence 45999999999999999988 999999999998765 5789999999999999999999999998 999999999
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
++|+.+...
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 999876553
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=3.1e-11 Score=99.25 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+++|+||||.+.++..||+..|++||.|.+|+|++ +|+||.|.-.++|..|++.|++. ++.|++++|+.+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~-~~~gk~m~vq~s 147 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNT-EFQGKRMHVQLS 147 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhccccc-ccccceeeeeee
Confidence 478999999999999999999999999999999986 69999999999999999999999 999999999987
Q ss_pred CCCcc
Q 038096 109 GQDKN 113 (211)
Q Consensus 109 ~~~~~ 113 (211)
.....
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 54433
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=7.4e-11 Score=107.62 Aligned_cols=74 Identities=18% Similarity=0.406 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+++||||+|+..++|.||.++|+.||.|.+|.++. ++|+|||.+....+|++|+..|+.. .+.++.|+|.||.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~-kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNV-KVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcc-cccceeeEEeeec
Confidence 58999999999999999999999999999998864 4699999999999999999999986 9999999999975
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 3
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=6.9e-11 Score=106.96 Aligned_cols=83 Identities=18% Similarity=0.409 Sum_probs=76.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|+|.|||+..+-.+++.+|..||.+.+|+|+.-...+.++|||||+|.++.+|..|++.|..+ -+.||.|.++||.
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ST-HlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGST-HLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccc-ceechhhheehhc
Confidence 579999999999999999999999999999999987666788999999999999999999999987 8999999999998
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
.+..
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 6643
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=3.6e-10 Score=98.40 Aligned_cols=76 Identities=26% Similarity=0.477 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
..|||| ++++|..|.++|+.+|.++++++.+|. | +-|||||.|.+.++|++||+.+|.. .+.|+.|++.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~-~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFD-VLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCc-ccCCcEEEeehhcc
Confidence 468999 899999999999999999999999998 6 9999999999999999999999998 99999999999876
Q ss_pred Ccc
Q 038096 111 DKN 113 (211)
Q Consensus 111 ~~~ 113 (211)
+..
T Consensus 75 d~~ 77 (369)
T KOG0123|consen 75 DPS 77 (369)
T ss_pred CCc
Confidence 543
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.07 E-value=3.1e-10 Score=97.95 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
+.+.|+|||.|||+++||..|++-|..||.|..+.|+. .|+++| .|.|.++++|+.|+..|+|. .++|+.|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs-~l~Gr~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGS-RLDGRNIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccC-cccCceeeee
Confidence 45689999999999999999999999999999999953 378887 89999999999999999999 9999999997
Q ss_pred e
Q 038096 107 L 107 (211)
Q Consensus 107 ~ 107 (211)
+
T Consensus 607 y 607 (608)
T KOG4212|consen 607 Y 607 (608)
T ss_pred e
Confidence 6
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=3.1e-10 Score=96.07 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=74.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
-.+|||..+..+++|+||+..|+.||+|+.|.+-++..++.+|||||++|.+..+...||..||-. -++|.-|+|..+-
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlF-DLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLF-DLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchh-hcccceEeccccc
Confidence 478999999999999999999999999999999999988999999999999999999999999976 9999999997754
No 73
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=4.9e-10 Score=99.52 Aligned_cols=83 Identities=14% Similarity=0.278 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.-+++|||.+|...+...+|+.+|++||.|+-.+++++..+--.++||||++.+.++|.+||+.|+.+ +|.|+.|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT-ELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT-ELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh-hhcceeeeeee
Confidence 34789999999999999999999999999999999999888888999999999999999999999998 99999999998
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8643
No 74
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=98.60 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCC---CCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK---ETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~---~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
+.+++||||||+..++++.|...|+.||+|..++|+.-+ +..+.+-+|||.|.+..+|++|++.|+|. ++.+..++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~-iv~~~e~K 250 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI-IVMEYEMK 250 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce-eeeeeeee
Confidence 457899999999999999999999999999999988754 34567889999999999999999999997 99999999
Q ss_pred EEecCC
Q 038096 105 FALSGQ 110 (211)
Q Consensus 105 v~~a~~ 110 (211)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999854
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=98.77 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCC---CCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET---DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~t---g~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
++|||.||+++++.++|...|...|.|..+.|.+-++. -.+.|||||+|.+.++|+.|++.|+|+ .|+|+.|.|++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt-vldGH~l~lk~ 594 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT-VLDGHKLELKI 594 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc-eecCceEEEEe
Confidence 44999999999999999999999999999988776542 125599999999999999999999999 89999999999
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.98 E-value=1.3e-08 Score=81.14 Aligned_cols=87 Identities=16% Similarity=0.290 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEcc-CCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC---CeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR-DKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY---NRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~-d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~---gr~l 103 (211)
..-++|||.+||.++...+|..+|..|-..+.+.|.. ++...-.+-+|||+|.+..+|++|++.|||. .|+ +..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv-rFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGV-RFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCe-eeccccCcee
Confidence 3468999999999999999999999987777765544 3322335689999999999999999999996 787 4689
Q ss_pred EEEecCCCccCC
Q 038096 104 RFALSGQDKNAQ 115 (211)
Q Consensus 104 ~v~~a~~~~~~~ 115 (211)
++++|+...+.+
T Consensus 111 hiElAKSNtK~k 122 (284)
T KOG1457|consen 111 HIELAKSNTKRK 122 (284)
T ss_pred EeeehhcCcccc
Confidence 999987655544
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.96 E-value=6.4e-10 Score=90.01 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+..+||+|.|..+++++.|-..|.+|-.-...++++|+.||+++||+||.|.+..++..|+.+|+|+ .++.+.|++..
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gk-yVgsrpiklRk 266 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGK-YVGSRPIKLRK 266 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccc-ccccchhHhhh
Confidence 45678999999999999999999999998888999999999999999999999999999999999999 89999998865
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 44
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=4.4e-10 Score=89.20 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
+..++|||+||...++|+-|.++|.+.|.|.++.|..+++ ++.| ||||.|.++..+.-|++++||. .+.++.+.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~-~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGD-DLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccc-hhccchhhccc
Confidence 3478999999999999999999999999999999999987 6777 9999999999999999999997 99998877765
No 79
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.3e-09 Score=87.46 Aligned_cols=72 Identities=26% Similarity=0.385 Sum_probs=66.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
..+|||+|++.+.+.+|+.+|..||.|..+.+.. ||+||+|.+..+|..||..+|++ +|+|-++.|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~-~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGK-ELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCc-eecceeeeeecccc
Confidence 4799999999999999999999999999997754 89999999999999999999999 89998899999875
Q ss_pred C
Q 038096 111 D 111 (211)
Q Consensus 111 ~ 111 (211)
.
T Consensus 73 ~ 73 (216)
T KOG0106|consen 73 K 73 (216)
T ss_pred c
Confidence 3
No 80
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.89 E-value=7.6e-09 Score=84.66 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
..+|+|.||+..+.++||+++|..||.+..+.+.+|+. |.+.|.|-|.|...++|.+|++.+||. .++|+.+++....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv-~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGV-ALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCc-ccCCceeeeEEec
Confidence 37899999999999999999999999999999999875 999999999999999999999999995 9999999988764
Q ss_pred CC
Q 038096 110 QD 111 (211)
Q Consensus 110 ~~ 111 (211)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.88 E-value=2.8e-09 Score=87.12 Aligned_cols=81 Identities=27% Similarity=0.408 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+...+||||+.+.++.++++..|+.||.|..+.|+.|+.++.++||+||+|.+.+.++.|+. |+|. .|.|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs-~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS-EIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc-ccccccceee
Confidence 3457889999999999999999999999999999999999999999999999999999999999 8998 9999999998
Q ss_pred ecC
Q 038096 107 LSG 109 (211)
Q Consensus 107 ~a~ 109 (211)
+.+
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 853
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.86 E-value=1.5e-08 Score=85.27 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--------EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR 101 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr 101 (211)
++.|||.|||.++|.+++.++|+++|.|.. |+|-++.+ |.-+|=|.+.|...++++-|++.|++. .+.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~-~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDED-ELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcc-cccCc
Confidence 567999999999999999999999998864 88888877 999999999999999999999999999 99999
Q ss_pred EEEEEecCCCcc
Q 038096 102 TLRFALSGQDKN 113 (211)
Q Consensus 102 ~l~v~~a~~~~~ 113 (211)
.|+|+.|+-+.+
T Consensus 212 ~~rVerAkfq~K 223 (382)
T KOG1548|consen 212 KLRVERAKFQMK 223 (382)
T ss_pred EEEEehhhhhhc
Confidence 999999874443
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.84 E-value=6.3e-09 Score=91.38 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=66.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
...|||+|||.++++++|+++|..||.|+...|..-.-.++..+||||+|.+.++++.||+.- .+.|++++|.|+--+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As--p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS--PLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC--ccccCCeeEEEEecc
Confidence 456999999999999999999999999999777654322444599999999999999999885 358999999998744
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.4e-08 Score=90.44 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=81.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...+++|||+||..++++++++++..||.+....+..|..+|.++||||.+|.+......|+..|||. .++++.|.|..
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm-~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGM-QLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchh-hhcCceeEeeh
Confidence 44688999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCccCC
Q 038096 108 SGQDKNAQ 115 (211)
Q Consensus 108 a~~~~~~~ 115 (211)
|-......
T Consensus 366 A~~g~~~~ 373 (500)
T KOG0120|consen 366 AIVGASNA 373 (500)
T ss_pred hhccchhc
Confidence 87766554
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1e-08 Score=90.93 Aligned_cols=74 Identities=18% Similarity=0.265 Sum_probs=65.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 25 GNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 25 ~~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
++.....+|+|-|||..+++++|+++|+.||+|+.++. |-..+|..||+|.|..+|++|++.||+. .|.|+.|+
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~-~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRR-EIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHH-Hhhhhhhc
Confidence 33445789999999999999999999999999999654 3455799999999999999999999998 99999888
No 86
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.67 E-value=8.4e-09 Score=91.33 Aligned_cols=94 Identities=28% Similarity=0.380 Sum_probs=81.6
Q ss_pred cccccCCCCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 19 KRQIMSGNSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 19 ~~~~~~~~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
...+.....-+.+++|+-.|...+++.+|.+||+.+|.|..|.|+.|+.++.++|.|||+|.+.+.+..||. |.|. .+
T Consensus 168 ~~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGq-rl 245 (549)
T KOG0147|consen 168 ASRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQ-RL 245 (549)
T ss_pred ccccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCC-cc
Confidence 333444444557889999999999999999999999999999999999999999999999999999999995 6888 89
Q ss_pred CCeEEEEEecCCCccC
Q 038096 99 YNRTLRFALSGQDKNA 114 (211)
Q Consensus 99 ~gr~l~v~~a~~~~~~ 114 (211)
.|..|.|......+..
T Consensus 246 lg~pv~vq~sEaeknr 261 (549)
T KOG0147|consen 246 LGVPVIVQLSEAEKNR 261 (549)
T ss_pred cCceeEecccHHHHHH
Confidence 9999999987665554
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=4.5e-07 Score=64.21 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhc--CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC----CeEEE
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQ--AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY----NRTLR 104 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~--~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~----gr~l~ 104 (211)
++|-|.|||...+.++|.+++.. .|....+.++.|..++.+.|||||.|.+.+.|.+-.+.++|. .+. .+.+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~-~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK-KWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC-ccccCCCCcEEE
Confidence 68999999999999999988854 467777899999999999999999999999999999999998 665 35677
Q ss_pred EEecCCC
Q 038096 105 FALSGQD 111 (211)
Q Consensus 105 v~~a~~~ 111 (211)
|.||+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 8887543
No 88
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.41 E-value=2.4e-07 Score=78.55 Aligned_cols=84 Identities=27% Similarity=0.407 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--------EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY 99 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~ 99 (211)
....+|||-+|+..+++++|.++|.++|.|.. |.|-+|++|+..||-|.|.|.+...|++||..++++ .+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk-df~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK-DFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc-ccc
Confidence 44678999999999999999999999998853 788899999999999999999999999999999999 999
Q ss_pred CeEEEEEecCCCc
Q 038096 100 NRTLRFALSGQDK 112 (211)
Q Consensus 100 gr~l~v~~a~~~~ 112 (211)
+.+|+|..|....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998876443
No 89
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.38 E-value=1.6e-06 Score=74.74 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=68.6
Q ss_pred CCeEEEcCCC-CCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVYIGNLD-EKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp-~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
++.|-|.||. ..+|.+.|..+|+.||.|.+|+|+.++. .-|+|+|.+...|+-|++.|+|. .+.|++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~-~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGH-KLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcc-eecCceEEEeec
Confidence 5788999997 5699999999999999999999998763 67999999999999999999998 999999999998
Q ss_pred CC
Q 038096 109 GQ 110 (211)
Q Consensus 109 ~~ 110 (211)
+-
T Consensus 371 KH 372 (492)
T KOG1190|consen 371 KH 372 (492)
T ss_pred cC
Confidence 63
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.33 E-value=2.4e-06 Score=75.24 Aligned_cols=75 Identities=28% Similarity=0.423 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
..-|-+.+|||++|++||.+||+.++ |..+.+.+ .+|+..|-|||+|.+.+++++|++. +.. .+..|-|.|-.+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~-~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRE-SMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHH-HhCCceEEEEccC
Confidence 45677889999999999999999986 77766665 4699999999999999999999987 443 6788888887664
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.32 E-value=7.2e-06 Score=69.56 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=63.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR 101 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G--~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr 101 (211)
-.+|||||-|++|++||.+.+..-| .+.++++..++..|.+||||+|...+..+..+.++.|-.+ +|.|+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k-~iHGQ 152 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK-TIHGQ 152 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc-eecCC
Confidence 3589999999999999999998877 4677888888888999999999999999999999999988 89887
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.11 E-value=3.5e-06 Score=71.08 Aligned_cols=82 Identities=21% Similarity=0.442 Sum_probs=73.7
Q ss_pred CCeEE-EcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVY-IGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lf-VgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++| |++|++.+++++|+.+|..+|.|..+++..+..++..+|||+|.|.+...+..++.. +.. .+.++.+.+...
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTR-SIGGRPLRLEED 261 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccC-cccCcccccccC
Confidence 45555 999999999999999999999999999999999999999999999999999999987 665 899999999887
Q ss_pred CCCcc
Q 038096 109 GQDKN 113 (211)
Q Consensus 109 ~~~~~ 113 (211)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 65544
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.08 E-value=4.3e-06 Score=66.99 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=52.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
.+|||.||..+++|++|+.+|+.|-....++|.. ...-..||++|++.+.|..|+..|+|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 4699999999999999999999998777777643 223368999999999999999999987
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=3.5e-06 Score=67.79 Aligned_cols=69 Identities=26% Similarity=0.347 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.|+|.++...+.+.+|.+.|..+|.+....+ ..+++||+|...++|..||..+++. .+.++.|.+..
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~-~~~~~~l~~~~ 167 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGK-KLNGRRISVEK 167 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccch-hhcCceeeecc
Confidence 688999999999999999999999999955444 3489999999999999999999999 99999999944
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.98 E-value=3.4e-05 Score=52.76 Aligned_cols=70 Identities=17% Similarity=0.366 Sum_probs=47.0
Q ss_pred CeEEEcCCCCCCcHHHH----HHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 31 CNVYIGNLDEKVNERVL----YDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L----~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.-|+|.|||.+.+...+ +.++.-+| .|..|. .+-|+|.|.+.+.|++|.+.|+|. .+.|.+|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegE-dVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGE-DVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT---SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhccc-ccccceEEE
Confidence 46899999998887655 45555565 555552 278999999999999999999997 899999999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
++....
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 997433
No 96
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.97 E-value=2.6e-05 Score=68.76 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVD-LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~-v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
....|-+.+||+.|+++||.+||+..-.+.. +.++.|.. +++.|-|||+|++.+.|++||..-.. .|+-|-|.|-.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre--~iGhRYIEvF~ 178 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRE--NIGHRYIEVFR 178 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHH--hhccceEEeeh
Confidence 3567888999999999999999998765544 66777765 78999999999999999999987443 68888888876
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
+.
T Consensus 179 Ss 180 (510)
T KOG4211|consen 179 SS 180 (510)
T ss_pred hH
Confidence 54
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.97 E-value=2e-05 Score=66.69 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=60.9
Q ss_pred CCeEEEcCCCCCCcHHH----H--HHHHhcCCCeEEEEEccCCCCCC-Ccc-E-EEEEeCCHHHHHHHHHHcCCCeeeCC
Q 038096 30 GCNVYIGNLDEKVNERV----L--YDILIQAGRVVDLYIPRDKETDK-PKG-F-AFVEYESEEIGHYAIKLFSGIVTLYN 100 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~----L--~~~F~~~G~i~~v~i~~d~~tg~-~rg-~-aFV~f~~~~~A~~Ai~~lng~~~i~g 100 (211)
..-+||-+|+..+-.++ | .++|++||.|..|.+-+-.-+.. ..+ + .||+|.+.++|..||...+|. .++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs-~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS-LLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc-cccC
Confidence 45689999997766554 3 58999999999998765431111 112 2 399999999999999999999 8999
Q ss_pred eEEEEEec
Q 038096 101 RTLRFALS 108 (211)
Q Consensus 101 r~l~v~~a 108 (211)
|.|+..+.
T Consensus 193 r~lkatYG 200 (480)
T COG5175 193 RVLKATYG 200 (480)
T ss_pred ceEeeecC
Confidence 99999874
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.94 E-value=2.8e-05 Score=56.03 Aligned_cols=71 Identities=15% Similarity=0.312 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCC----CeeeCCeEEEE
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG----IVTLYNRTLRF 105 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng----~~~i~gr~l~v 105 (211)
++.|.|.++...++.++|++.|+.||.|..|.+...- .-|+|.|.+.+.|++|++.+.. .+.+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3678899999999999999999999999999986643 5899999999999999976532 13455555544
Q ss_pred E
Q 038096 106 A 106 (211)
Q Consensus 106 ~ 106 (211)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.94 E-value=4.8e-05 Score=61.03 Aligned_cols=77 Identities=17% Similarity=0.328 Sum_probs=66.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC-CeEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY-NRTLRF 105 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~-gr~l~v 105 (211)
.++...+|+.|||.+++.+.|..+|.+|..-.+++++... ++.|||+|.+...|..|...+++. .|- ...+.|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~-~it~~~~m~i 216 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGF-KITKKNTMQI 216 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccc-eeccCceEEe
Confidence 4668899999999999999999999999999999887654 489999999999999999999887 665 567777
Q ss_pred EecC
Q 038096 106 ALSG 109 (211)
Q Consensus 106 ~~a~ 109 (211)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6653
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.87 E-value=8.2e-05 Score=63.81 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCC-CCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLD-EKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp-~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.+++.+.|-+|. ..++-+.|.++|..||.|.+|++++.+. |-|.|++.+..+.++|+..||+. .+-|.+|.|+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~-~lfG~kl~v~ 358 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNI-PLFGGKLNVC 358 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccC-ccccceEEEe
Confidence 568999999999 5688899999999999999999998765 88999999999999999999997 8899999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
.++...
T Consensus 359 ~SkQ~~ 364 (494)
T KOG1456|consen 359 VSKQNF 364 (494)
T ss_pred eccccc
Confidence 986554
No 101
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.0002 Score=64.33 Aligned_cols=78 Identities=29% Similarity=0.442 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCc------HHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC-
Q 038096 28 NSGCNVYIGNLDEKVN------ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN- 100 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g- 100 (211)
.-...|+|.|+|.--. ..-|..+|+++|+|+.+.++-+.++| .+||.|++|.+..+|+.|++.|||+ .|+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~-~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGK-RLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccc-eeccc
Confidence 3367899999994322 23456789999999999999888755 9999999999999999999999999 6765
Q ss_pred eEEEEEe
Q 038096 101 RTLRFAL 107 (211)
Q Consensus 101 r~l~v~~ 107 (211)
.+..|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 4666653
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.70 E-value=0.00014 Score=45.76 Aligned_cols=52 Identities=17% Similarity=0.480 Sum_probs=41.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHH
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAI 89 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai 89 (211)
+.|-|.|.+.+..+. +..+|..||+|..+.+. ....+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 456788888776644 55589999999999885 33479999999999999985
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.62 E-value=0.00017 Score=66.21 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=66.1
Q ss_pred CC-eEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 30 GC-NVYIGNLDEKVNERVLYDILIQAGRVVD-LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~-~lfVgnLp~~~~e~~L~~~F~~~G~i~~-v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
++ .|-+.|+|++++-+|+.+||..|-.+-. |.|.++ +.|...|-|-|.|++.++|.+|...|+++ .|..++|.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~-~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQ-KIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccC-cccceeEEEEe
Confidence 55 6789999999999999999999987754 445444 45999999999999999999999999999 99999988764
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.61 E-value=3.8e-05 Score=62.70 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCC--------CCCc----cEEEEEeCCHHHHHHHHHHcCCCee
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET--------DKPK----GFAFVEYESEEIGHYAIKLFSGIVT 97 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~t--------g~~r----g~aFV~f~~~~~A~~Ai~~lng~~~ 97 (211)
.-.||+++||+.++..-|+++|+.||.|-.|.+-....+ |... --|.|+|.+...|..+...||+. .
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~-~ 152 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT-P 152 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC-c
Confidence 456999999999999999999999999999988776544 2222 23689999999999999999999 8
Q ss_pred eCCeE
Q 038096 98 LYNRT 102 (211)
Q Consensus 98 i~gr~ 102 (211)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99873
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00021 Score=63.56 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=59.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHh-cCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILI-QAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~-~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 91 (211)
++.++||||+||.-++.++|-.+|. -||.|..+-|-+|.+-+-++|-|=|+|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5579999999999999999999998 899999999999987789999999999999999999975
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00027 Score=62.93 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCC---CCCCcc---EEEEEeCCHHHHHHHHHHc
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKE---TDKPKG---FAFVEYESEEIGHYAIKLF 92 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~---tg~~rg---~aFV~f~~~~~A~~Ai~~l 92 (211)
+++||||+||++++|++|...|..||.+ .+.+....+ ---++| |+|+.|+++..++.-|...
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 6899999999999999999999999986 455552111 123567 9999999999888877654
No 107
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.56 E-value=0.00027 Score=63.48 Aligned_cols=66 Identities=26% Similarity=0.314 Sum_probs=53.3
Q ss_pred HHHHHHhcCCCeEEEEEccC-CC--CCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCCCc
Q 038096 46 VLYDILIQAGRVVDLYIPRD-KE--TDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDK 112 (211)
Q Consensus 46 ~L~~~F~~~G~i~~v~i~~d-~~--tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~~~ 112 (211)
+++.-+++||.|..|.|.++ .+ -.-.-|--||+|.+.+++++|.+.|+|. .+.|+.|...+-..++
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr-KF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGR-KFANRTVVASYYDEDK 493 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCc-eeCCcEEEEEecCHHH
Confidence 34445678999999999988 22 1234567799999999999999999999 9999999999865543
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.53 E-value=0.00057 Score=58.94 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=64.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEE---EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVD---LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~---v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...|-+.+||+..+.++|.+||..|-.-.. |.++.+.+ |+..|-|||+|.++++|.+|....+.+ ....|-|.|-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~-~mk~RYiEvf 357 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKK-LMKSRYIEVF 357 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHh-hcccceEEEe
Confidence 567889999999999999999999875433 56666654 999999999999999999999888876 4567888886
Q ss_pred ecC
Q 038096 107 LSG 109 (211)
Q Consensus 107 ~a~ 109 (211)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 654
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.52 E-value=0.00018 Score=67.63 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC--eEE
Q 038096 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN--RTL 103 (211)
Q Consensus 26 ~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l 103 (211)
++...+.+|||+|..++....|...|..||.|..|.+-. ..-||+|.|++...|++|++.|-|. .|+| +.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rga-p~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGA-PLGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcC-cCCCCCccc
Confidence 455688999999999999999999999999999988844 3479999999999999999999997 8887 579
Q ss_pred EEEecCCCccCC
Q 038096 104 RFALSGQDKNAQ 115 (211)
Q Consensus 104 ~v~~a~~~~~~~ 115 (211)
+|.++...-...
T Consensus 524 rvdla~~~~~~P 535 (975)
T KOG0112|consen 524 RVDLASPPGATP 535 (975)
T ss_pred ccccccCCCCCh
Confidence 999987654443
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.40 E-value=0.00083 Score=57.17 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=61.2
Q ss_pred CCeEEEcCCC----CCCc-------HHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 30 GCNVYIGNLD----EKVN-------ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 30 ~~~lfVgnLp----~~~~-------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
.++|.+.||= +..+ +++|++-..+||.|.+|.|-- ..+.|.+-|.|.+.++|..||+.|+|. .+
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR-~f 339 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGR-WF 339 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCe-ee
Confidence 6788888873 2334 345566678999999987642 356799999999999999999999999 99
Q ss_pred CCeEEEEEecCCC
Q 038096 99 YNRTLRFALSGQD 111 (211)
Q Consensus 99 ~gr~l~v~~a~~~ 111 (211)
+||.|..+.....
T Consensus 340 dgRql~A~i~DG~ 352 (382)
T KOG1548|consen 340 DGRQLTASIWDGK 352 (382)
T ss_pred cceEEEEEEeCCc
Confidence 9999998775443
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.30 E-value=0.00073 Score=58.71 Aligned_cols=78 Identities=21% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe-EEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR-TLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr-~l~v~ 106 (211)
++..+|-..|+|.+++|++|+++|..-|...+..... ++.+-+|++.+++.|+|..|+..++.. .+++. -|+|+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh-~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNH-YLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccc-cCCCCceEEEE
Confidence 4577899999999999999999999988776653322 455679999999999999999999876 66665 89999
Q ss_pred ecCC
Q 038096 107 LSGQ 110 (211)
Q Consensus 107 ~a~~ 110 (211)
+++.
T Consensus 487 FSks 490 (492)
T KOG1190|consen 487 FSKS 490 (492)
T ss_pred eecc
Confidence 9753
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.30 E-value=0.00027 Score=61.64 Aligned_cols=68 Identities=24% Similarity=0.199 Sum_probs=57.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccC---CCC--CC--------CccEEEEEeCCHHHHHHHHHHcCC
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRD---KET--DK--------PKGFAFVEYESEEIGHYAIKLFSG 94 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d---~~t--g~--------~rg~aFV~f~~~~~A~~Ai~~lng 94 (211)
.++++|.+-|||.+-.-+.|.++|+.+|.|..|+|..- ... +. .+-+|+|+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46899999999999988999999999999999998765 211 11 256899999999999999999865
Q ss_pred C
Q 038096 95 I 95 (211)
Q Consensus 95 ~ 95 (211)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 113
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.26 E-value=0.00026 Score=61.74 Aligned_cols=78 Identities=26% Similarity=0.291 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
.++|+|||.+.++..+|+.+|...-.-..-.++ ...||+||...+...|.+|++.++|++++.|+++.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 479999999999999999999764111111111 12399999999999999999999999999999999988766
Q ss_pred CccC
Q 038096 111 DKNA 114 (211)
Q Consensus 111 ~~~~ 114 (211)
++.+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5543
No 114
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.25 E-value=0.0013 Score=51.58 Aligned_cols=59 Identities=27% Similarity=0.308 Sum_probs=54.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
.-.|.|.+||...+|.||+++..+.|.|....+.+| |.+.|+|...|+.+-|+..|...
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccc
Confidence 678999999999999999999999999999998876 69999999999999999988776
No 115
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.20 E-value=0.0028 Score=45.17 Aligned_cols=76 Identities=8% Similarity=0.145 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEE-EccCCC------CCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe-
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLY-IPRDKE------TDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR- 101 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~-i~~d~~------tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr- 101 (211)
.+-|.|-+.|.. ..+.+.+.|++||.|.+.. +.++.. ......+-.|+|.++.+|.+||.. ||. .++|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~-i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGT-IFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTE-EETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCe-EEcCcE
Confidence 566788889987 5567788999999998874 211100 023347899999999999999987 898 78886
Q ss_pred EEEEEec
Q 038096 102 TLRFALS 108 (211)
Q Consensus 102 ~l~v~~a 108 (211)
.+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4557765
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.10 E-value=0.00022 Score=66.79 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
..++||.|+|+..|.++|+.++..+|.+.++.++..+. |+++|.|||.|.+..+|.+++...... .+.-..+.|+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~-~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVA-GKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhh-hhhhcCccccccC
Confidence 56799999999999999999999999999999888876 999999999999999999999887775 6666677777766
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
+...
T Consensus 814 p~~~ 817 (881)
T KOG0128|consen 814 PERD 817 (881)
T ss_pred Cccc
Confidence 5433
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.04 E-value=6.6e-05 Score=70.13 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=58.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
.+++||.||+..+.+.+|...|..+|.+..+.|.-.+.+++.+|+|+++|...+.+.+||....+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 467999999999999999999999999988777655567899999999999999999999877665
No 118
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.01 E-value=0.00033 Score=57.29 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=50.1
Q ss_pred HHHHHHh-cCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 46 VLYDILI-QAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 46 ~L~~~F~-~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+|...|+ +||+|+++.|-.+.. -.-+|-.+|.|...++|++|++.||+. .+.|++|.+.+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnR-w~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNR-WYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCc-cccCCcceeeecC
Confidence 4444455 899999986655432 345789999999999999999999999 8999999998853
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.88 E-value=0.0038 Score=52.23 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCeEEEEEccCCCCCCCc-cEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 44 ERVLYDILIQAGRVVDLYIPRDKETDKPK-GFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 44 e~~L~~~F~~~G~i~~v~i~~d~~tg~~r-g~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
++++++-.++||.|..|.|..+..--... ---||+|...++|.+|+-.|||. .|+|+.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR-yFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR-YFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc-eecceeeeheecc
Confidence 45677888999999998877765322222 23599999999999999999999 9999999887754
No 120
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.84 E-value=0.0067 Score=52.36 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=63.7
Q ss_pred CCCeEEEcCCC--CCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC-eEEEE
Q 038096 29 SGCNVYIGNLD--EKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN-RTLRF 105 (211)
Q Consensus 29 ~~~~lfVgnLp--~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g-r~l~v 105 (211)
.++.|.+.=|. .-+|-+.|..+....|.|.+|.|.+- .---|.|+|++.+.|++|.+.|||.=+..| .+|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 35555555444 56899999999999999999998763 224689999999999999999999823334 49999
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
++|++.+-.
T Consensus 194 eyAkP~rln 202 (494)
T KOG1456|consen 194 EYAKPTRLN 202 (494)
T ss_pred EecCcceee
Confidence 999877543
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.77 E-value=0.0079 Score=38.93 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcC---CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQA---GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~---G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 92 (211)
-.+|+|.|++ +++.++++.+|..| .....|.++-|. -|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999997 57889999999998 235688888875 5889999999999999764
No 122
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.75 E-value=0.0093 Score=45.19 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=51.8
Q ss_pred CCCCeEEEcCCC------CCCcH---HHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 28 NSGCNVYIGNLD------EKVNE---RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 28 ~~~~~lfVgnLp------~~~~e---~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
++..+|.|.-+. ....+ .+|.+.|..||.+.-+++.- +--+|+|.+-+.|.+|+.. +|. ++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals~-dg~-~v 94 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALSL-DGI-QV 94 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHHG-CCS-EE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHcc-CCc-EE
Confidence 456777776554 12222 26778899999998888765 3579999999999999984 887 99
Q ss_pred CCeEEEEEecCCCccC
Q 038096 99 YNRTLRFALSGQDKNA 114 (211)
Q Consensus 99 ~gr~l~v~~a~~~~~~ 114 (211)
+|+.|+|+...++.-.
T Consensus 95 ~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWLK 110 (146)
T ss_dssp TTEEEEEEE-------
T ss_pred CCEEEEEEeCCccHHH
Confidence 9999999887665543
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.61 E-value=0.0064 Score=52.66 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=47.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhc----CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 038096 32 NVYIGNLDEKVNERVLYDILIQ----AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~----~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 91 (211)
.|-..+||+++++.|+.+||.. -|..+.+.+++-.+ |+..|=|||.|..+++|+.||..
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH
Confidence 3556799999999999999973 23445566666544 89999999999999999999965
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.41 E-value=0.0011 Score=62.51 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+.+||+|||+..+++.+|+..|..+|.|.+|.|-+-+- +.--.||||.|.+.+.+..|+..+.+. .|....+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~-~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGP-LIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCC-ccccCccccccc
Confidence 368899999999999999999999999999998876542 555689999999999999999999887 555545555554
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.33 E-value=0.0008 Score=57.11 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=59.8
Q ss_pred CCeEEEcCCCCCCcHH-HHH--HHHhcCCCeEEEEEccCCC--CCC-CccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 30 GCNVYIGNLDEKVNER-VLY--DILIQAGRVVDLYIPRDKE--TDK-PKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~-~L~--~~F~~~G~i~~v~i~~d~~--tg~-~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
..-+||-+|+..+..+ .|+ +.|.+||.|..+.+-.+.. .+. .-.-++|+|...++|..||...+|. .++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~-~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF-VDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH-Hhhhhhh
Confidence 3567999999776554 443 6799999999998888662 111 1223799999999999999999997 8899887
Q ss_pred EEEecC
Q 038096 104 RFALSG 109 (211)
Q Consensus 104 ~v~~a~ 109 (211)
+..+..
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 766643
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.16 E-value=0.0062 Score=50.03 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=55.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG 94 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng 94 (211)
..|||.||...++-+.|.+.|+.||.|....+..|-. ++..+-++|.|...-.|.+|+..+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhcc
Confidence 7799999999999999999999999998866655543 88889999999999999999987743
No 127
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.03 E-value=0.096 Score=47.57 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=55.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhc--CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCe-eeCCeEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQ--AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIV-TLYNRTL 103 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~--~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~-~i~gr~l 103 (211)
..+.|.|++.-||..+-.|+++.+|.. +-.+.+|.+..+. -=||+|++..||+.|.+.|...+ +|-|+.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 344688899999999999999999975 6778888776542 24999999999999987764322 5667665
Q ss_pred EEE
Q 038096 104 RFA 106 (211)
Q Consensus 104 ~v~ 106 (211)
...
T Consensus 245 mAR 247 (684)
T KOG2591|consen 245 MAR 247 (684)
T ss_pred hhh
Confidence 443
No 128
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.92 E-value=0.079 Score=40.04 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCCCCeEEEcCCCCCCcH-HHHH---HHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE
Q 038096 27 SNSGCNVYIGNLDEKVNE-RVLY---DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT 102 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e-~~L~---~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~ 102 (211)
.++-.+|.|.=|..++.. +||+ ..++.||+|.++.+ ..+--|.|.|++..+|-+|+.+++. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~d~~SAC~Av~Af~s--~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFKDITSACKAVSAFQS--RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEehhhHHHHHHHHhhcC--CCCCce
Confidence 355678889877766653 4555 45678999999965 2346799999999999999999876 478889
Q ss_pred EEEEecC
Q 038096 103 LRFALSG 109 (211)
Q Consensus 103 l~v~~a~ 109 (211)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 9999853
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.89 E-value=0.006 Score=56.42 Aligned_cols=77 Identities=19% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVD-LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~-v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+..|||..||..+++.++.++|...-.|++ |.|.+.. +++-++.|||.|..++++..|+..-... .++.+.|+|.-
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~-y~G~r~irv~s 510 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKF-YPGHRIIRVDS 510 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhccccc-ccCceEEEeec
Confidence 4788999999999999999999988777776 6666655 4888999999999988888887665554 67778888864
No 130
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.87 E-value=0.0069 Score=55.07 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhc-CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee---CCeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQ-AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL---YNRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~-~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i---~gr~l 103 (211)
..++.|+|.||-.-+|.-+|+.+++. .|.|.+.+| .+.|..|||.|.+.++|.+....|||. .+ +++-|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm------DkIKShCyV~yss~eEA~atr~AlhnV-~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM------DKIKSHCYVSYSSVEEAAATREALHNV-QWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH------HHhhcceeEecccHHHHHHHHHHHhcc-ccCCCCCcee
Confidence 34788999999999999999999995 555566633 345689999999999999999999997 43 44678
Q ss_pred EEEecCCC
Q 038096 104 RFALSGQD 111 (211)
Q Consensus 104 ~v~~a~~~ 111 (211)
.+.|...+
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 88887644
No 131
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.82 E-value=0.043 Score=37.58 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=41.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFS 93 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln 93 (211)
...+|+ .|..+...||.++|+.||.| .|.++.| .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 445565 99999999999999999987 5666665 479999999999999998875
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.47 E-value=0.14 Score=44.59 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCC---CCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK---ETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~---~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...|-|.||.+.++.++++.+|.-.|.|.++.|.-.. ......-.|||.|.+...+..|-.+.|- .+-++.|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtnt--vfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNT--VFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccc--eeeeeeEEEE
Confidence 3489999999999999999999999999999876533 2244567999999999999988776654 3555655554
Q ss_pred e
Q 038096 107 L 107 (211)
Q Consensus 107 ~ 107 (211)
.
T Consensus 85 p 85 (479)
T KOG4676|consen 85 P 85 (479)
T ss_pred e
Confidence 3
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.25 E-value=0.06 Score=42.31 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhc-CCCe---EEEE--EccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe-
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQ-AGRV---VDLY--IPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR- 101 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~-~G~i---~~v~--i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr- 101 (211)
...+|.|.+||+.++|+++.+.+.. ++.. ..+. ..........-.-|||.|.+.+++..-+..++|.+-++.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3679999999999999999887766 6655 3333 2222211223467899999999999999999997333332
Q ss_pred ---EEEEEecC
Q 038096 102 ---TLRFALSG 109 (211)
Q Consensus 102 ---~l~v~~a~ 109 (211)
...|.+|-
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 45566654
No 134
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.08 E-value=0.11 Score=41.18 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=45.9
Q ss_pred cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcC--CCeeeCCeEEEEEecCCC
Q 038096 43 NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFS--GIVTLYNRTLRFALSGQD 111 (211)
Q Consensus 43 ~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln--g~~~i~gr~l~v~~a~~~ 111 (211)
..+.|+++|..++.+....+++. -+-..|.|.+.++|.+|...|+ +. .+.|..|+|-++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~-~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGT-SFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TS-EETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccccc-ccCCCceEEEEcccc
Confidence 34789999999999988877653 3668999999999999999999 88 999999999888433
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.38 E-value=0.029 Score=49.83 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCc-HHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVYIGNLDEKVN-ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp~~~~-e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+.|-+.-.++.++ -++|...|.+||.|..|.+-.. ---|.|+|.+..+|-.|-.. .+. .|+++-|+|.|-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s-~~a-vlnnr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYAS-HGA-VLNNRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcc-ccc-eecCceeEEEEe
Confidence 45555555665554 5899999999999999988544 35789999999999666543 566 899999999997
Q ss_pred CCC
Q 038096 109 GQD 111 (211)
Q Consensus 109 ~~~ 111 (211)
++.
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 553
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.96 E-value=0.03 Score=47.40 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=64.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..+++|+|++.+.+.+.+...++..+|....+..........++|++.+.|...+.+..|+...... .+.+..+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~-~~~~~~~~~dl 164 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSK-VLDGNKGEKDL 164 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcc-ccccccccCcc
Confidence 3688999999999999999999999999988888777777899999999999999999999876544 45555544433
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.69 E-value=0.56 Score=39.70 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=49.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE-EEEEec
Q 038096 33 VYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT-LRFALS 108 (211)
Q Consensus 33 lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~-l~v~~a 108 (211)
|-|-+.+.. .-.-|..+|++||.|++.... ....+-+|.|.++.+|++||.. ||+ +|+|.. |-|...
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~-ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGT-IIDGDVMIGVKPC 267 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCe-eeccceEEeeeec
Confidence 334456644 335677899999999887654 3346899999999999999987 788 788764 445553
No 138
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.45 E-value=0.52 Score=30.86 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=41.8
Q ss_pred CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 41 KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 41 ~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.++-++++..|..|+-. + |..|+. | =||.|.+..+|+++....+|. .+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~t-----G-fYIvF~~~~Ea~rC~~~~~~~-~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDRT-----G-FYIVFNDSKEAERCFRAEDGT-LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecCC-----E-EEEEECChHHHHHHHHhcCCC-EEEEEEEEe
Confidence 46678999999999742 3 333432 3 389999999999999999998 777766654
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.36 E-value=0.69 Score=30.76 Aligned_cols=67 Identities=15% Similarity=0.321 Sum_probs=39.5
Q ss_pred eEEEc-CCCCCCcHHHHHHHHhcCCCe-----EEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 32 NVYIG-NLDEKVNERVLYDILIQAGRV-----VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 32 ~lfVg-nLp~~~~e~~L~~~F~~~G~i-----~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
++||. |--..++..+|..++..-+.| -.+.|.. .|+||+-.. +.|+.++..|++. .+.|++|+|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~-~~~gk~v~v 71 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGK-KIKGKKVRV 71 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT---SSS----E
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCC-CCCCeeEEE
Confidence 35553 223567888999999877554 4566643 589998775 4789999999998 999999999
Q ss_pred Eec
Q 038096 106 ALS 108 (211)
Q Consensus 106 ~~a 108 (211)
+.|
T Consensus 72 e~A 74 (74)
T PF03880_consen 72 ERA 74 (74)
T ss_dssp EE-
T ss_pred EEC
Confidence 865
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.54 E-value=0.078 Score=48.96 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.++.-++||||+...+.++-++.++..+|.|..+.... |||..|.....+..|+..++.. .++|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~-~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTEL-NIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhccc-CCCcchhhcc
Confidence 35578999999999999999999999999998876543 9999999999999999998876 8888877655
Q ss_pred e
Q 038096 107 L 107 (211)
Q Consensus 107 ~ 107 (211)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 141
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.93 E-value=1.8 Score=31.36 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=49.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN 100 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g 100 (211)
..+.+...|..++-++|..+.+.+- .|..++|++|. ...+=.+.+.|.+.++|.+-.+.+||+ .++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk-~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGK-PFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCC-ccCC
Confidence 3444555556666677776666554 45678998874 346678899999999999999999998 6654
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=91.45 E-value=0.078 Score=42.86 Aligned_cols=67 Identities=33% Similarity=0.666 Sum_probs=58.9
Q ss_pred CCCCeEEEcC----CCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 28 NSGCNVYIGN----LDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 28 ~~~~~lfVgn----Lp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
+...+++.|+ |...++++.+.+.|++-|.+..+++.++.+ |+.+.++|+++.-....-.++....+.
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhccc
Confidence 4467889999 899999999999999999999999999987 899999999998888888888776664
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.21 E-value=0.42 Score=43.43 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=56.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHH-hcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCe--eeCC-eEEEEE
Q 038096 31 CNVYIGNLDEKVNERVLYDIL-IQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIV--TLYN-RTLRFA 106 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F-~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~--~i~g-r~l~v~ 106 (211)
+++-|.|++...|-..|...- ...|....+.++.|-.+....|||||.|.+.+++..+.+++||+. .|++ +.+.+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 344445555444433333322 235667778888888778899999999999999999999999981 2233 356677
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
||+-+.+
T Consensus 469 YArIQGk 475 (549)
T KOG4660|consen 469 YARIQGK 475 (549)
T ss_pred hhhhhch
Confidence 8765443
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.14 E-value=0.15 Score=48.43 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEEEEec
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~v~~a 108 (211)
..+.++.|.+-..+-..|-.+|.+||.|.+.+.++|- ..|.|+|.+.+.|-.|++.++|+ +..-|-+.+|.+|
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 3455666777778888999999999999999887765 58999999999999999999998 3445668888887
Q ss_pred CC
Q 038096 109 GQ 110 (211)
Q Consensus 109 ~~ 110 (211)
+.
T Consensus 372 k~ 373 (1007)
T KOG4574|consen 372 KT 373 (1007)
T ss_pred cc
Confidence 63
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=86.44 E-value=0.028 Score=49.34 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEE-EccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLY-IPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~-i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
++++-+.|+|....++.|..++.+||.+..|. +.+|.+| ..--|+|...+.+..||..++|. .+....+++.+-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~-Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGP-QLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcch-HhhhhhhhcccC
Confidence 57799999999999999999999999999884 4444432 34457899999999999999998 999999998874
No 146
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.67 E-value=1.7 Score=36.61 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=38.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCe-EEEEEccCCCCCCCccEEEEEeCCHH
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRV-VDLYIPRDKETDKPKGFAFVEYESEE 83 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i-~~v~i~~d~~tg~~rg~aFV~f~~~~ 83 (211)
.+-|+++||+.++.-.||+..+.+-|.+ .++.| .-++|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4669999999999999999999988865 45555 345688999997653
No 147
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.03 E-value=5.1 Score=35.85 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcC-CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQA-GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN 100 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~-G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g 100 (211)
++.|+|=.+|..++-.||..|...+ -.|..++|++|.. -.+=..+|.|.+.++|..--+.+||+ .|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk-~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGK-QFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCC-cCCC
Confidence 7889999999999999999998765 4578899999642 23445699999999999999999999 6664
No 148
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.07 E-value=9.1 Score=30.20 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=55.3
Q ss_pred CCeEEEcCCCCCCcH-----HHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe-EE
Q 038096 30 GCNVYIGNLDEKVNE-----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR-TL 103 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e-----~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr-~l 103 (211)
-..+++-+++..+.. ...+++|.+|-+.....+++ +.++--|.|.+.+.|..|...+++. .|.|. .+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~-~f~~~~~~ 82 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHST-SFNGKNEL 82 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhc-ccCCCceE
Confidence 345667777754432 23456677666655555544 3466778899999999999999998 99998 78
Q ss_pred EEEecCCCccCCC
Q 038096 104 RFALSGQDKNAQN 116 (211)
Q Consensus 104 ~v~~a~~~~~~~~ 116 (211)
++-++.......+
T Consensus 83 k~yfaQ~~~~~~~ 95 (193)
T KOG4019|consen 83 KLYFAQPGHPESN 95 (193)
T ss_pred EEEEccCCCcccc
Confidence 8878766554443
No 149
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=68.71 E-value=8.9 Score=30.41 Aligned_cols=63 Identities=29% Similarity=0.391 Sum_probs=45.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHH
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAI 89 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai 89 (211)
......+++++++..+...++...|..+|.+....+...........+.++.+.....+..+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 345788999999999999999999999999988777665543444445554444444444443
No 150
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=15 Score=32.61 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCe-EEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRV-VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i-~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 91 (211)
-..|=|-++|.....+||...|+.|+.- -+|.|+-|. .+|..|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 4678888999888889999999999754 567777664 799999999999999876
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.89 E-value=28 Score=32.34 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=57.7
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHHhcC----CCeEEEEEccCCC----------CCC-----------------------
Q 038096 29 SGCNVYIGNLDEK-VNERVLYDILIQA----GRVVDLYIPRDKE----------TDK----------------------- 70 (211)
Q Consensus 29 ~~~~lfVgnLp~~-~~e~~L~~~F~~~----G~i~~v~i~~d~~----------tg~----------------------- 70 (211)
.+++|-|-||.|+ +...+|.-+|..| |.|.+|.|-.... .|-
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4788999999987 7788999998875 5888887653210 011
Q ss_pred --------------CccEEEEEeCCHHHHHHHHHHcCCCeeeCCe--EEEEEe
Q 038096 71 --------------PKGFAFVEYESEEIGHYAIKLFSGIVTLYNR--TLRFAL 107 (211)
Q Consensus 71 --------------~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr--~l~v~~ 107 (211)
.-=||.|+|.+.+.|.+.-+.+.|. ++... .|-+.|
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~-EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI-EFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc-eeccccceeeeee
Confidence 1127899999999999999999997 77765 455555
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=66.49 E-value=1.4 Score=38.67 Aligned_cols=72 Identities=10% Similarity=-0.024 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.++++|++|...+...++.+.|..+|.|....+.. +...-+|-++|........|+... |. .+.-+...+..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~-gr-e~k~qhsr~ai 222 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSH-GR-ERKRQHSRRAI 222 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhc-ch-hhhhhhhhhhh
Confidence 36799999999999999999999999998877643 445567779999888888888764 44 45433333333
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.34 E-value=18 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCeEEEEE
Q 038096 45 RVLYDILIQAGRVVDLYI 62 (211)
Q Consensus 45 ~~L~~~F~~~G~i~~v~i 62 (211)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999977654
No 154
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.54 E-value=27 Score=22.86 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=43.5
Q ss_pred HHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 45 RVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 45 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
+++.+-|...| .|..+.-+..+.++..-..-||+.....+...++ +=+ .+++..|+|+..+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik-~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIK-TLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehH-hhCCeEEEEecCCC
Confidence 45667777766 5777877777766777788899888765534433 323 68888999988643
No 155
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.59 E-value=17 Score=25.12 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred EEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 75 AFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 75 aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
|+|+|.+..-|+..++.-...+.+++..+.|..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 689999999999999865555678887766654
No 156
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=57.32 E-value=26 Score=23.08 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred HHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 45 RVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 45 ~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+++++-|...| .+..+.-+..++++..-..-||+.....+... .++=+ .|+|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik-~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIK-TLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeeh-hhCCeeEEEecCc
Confidence 45777788888 56778888888777777888888876544333 23333 6888898888753
No 157
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=54.51 E-value=15 Score=31.17 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=23.8
Q ss_pred EEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 75 AFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 75 aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
|||+|++..+|+.|++.+... .++.+.+..|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~---~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK---RPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC---CCCCceEeeCC
Confidence 799999999999999976543 33455666653
No 158
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.95 E-value=12 Score=27.31 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=23.4
Q ss_pred cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHH
Q 038096 43 NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83 (211)
Q Consensus 43 ~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~ 83 (211)
+.++|++.|+.|..++ ++.+.+. .-+.|++.|.|...-
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 4578999999998875 5455554 356799999997654
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=47.38 E-value=34 Score=29.14 Aligned_cols=79 Identities=14% Similarity=0.286 Sum_probs=54.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCC-------CCCCCccEEEEEeCCHHHHHHH-------HHHcCC
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK-------ETDKPKGFAFVEYESEEIGHYA-------IKLFSG 94 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~-------~tg~~rg~aFV~f~~~~~A~~A-------i~~lng 94 (211)
-++.|...|+..+++=-++...|.+||.|++|.++.+. +..+...-..+.|-+.+.|..- +.++..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 36778889999888888888889999999999998765 1123345678888888765432 122211
Q ss_pred CeeeCCeEEEEEecC
Q 038096 95 IVTLYNRTLRFALSG 109 (211)
Q Consensus 95 ~~~i~gr~l~v~~a~ 109 (211)
.+....|.+.+..
T Consensus 94 --~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 --KLKSESLTLSFVS 106 (309)
T ss_pred --hcCCcceeEEEEE
Confidence 3455566666543
No 160
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=43.37 E-value=9 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=20.8
Q ss_pred CCccEEEEEeCC-HHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 70 KPKGFAFVEYES-EEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 70 ~~rg~aFV~f~~-~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
..+|||||.-.+ .++.--.-..|++. ++|-++.|....
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A--~~gD~V~v~i~~ 44 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGA--MDGDKVLVRITP 44 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS---TT-EEEEEEEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCC--CCCCEEEEEEec
Confidence 357999999987 22222233456664 777777776654
No 161
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.61 E-value=22 Score=29.25 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLY 61 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~ 61 (211)
+++..+||+-|+|..++++.|.++.++.|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 46678999999999999999999999998655443
No 162
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.35 E-value=70 Score=22.03 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=32.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYE 80 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~ 80 (211)
..-+|||+++..+.|.-...+.+..+.-.-+-+..+ ....||+|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 567999999998887766666665554444444433 236799998874
No 163
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.61 E-value=25 Score=20.07 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=10.5
Q ss_pred CCCcHHHHHHHHhcCCC
Q 038096 40 EKVNERVLYDILIQAGR 56 (211)
Q Consensus 40 ~~~~e~~L~~~F~~~G~ 56 (211)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47889999999988653
No 164
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.84 E-value=5.6 Score=36.57 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=51.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
..|.||+.|+++.++-++|..+...+--...+.+-.+..-.....+++|+|.---....|+..||+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~i 296 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGI 296 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhc
Confidence 4688999999999999999999998877777665544433445678899998666666677667764
No 165
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=33.41 E-value=97 Score=21.90 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=25.2
Q ss_pred CCcHHHHHHHHh-cCCCeEEEEEccCC----CCCCCccEEEEEeCCHHHHHH
Q 038096 41 KVNERVLYDILI-QAGRVVDLYIPRDK----ETDKPKGFAFVEYESEEIGHY 87 (211)
Q Consensus 41 ~~~e~~L~~~F~-~~G~i~~v~i~~d~----~tg~~rg~aFV~f~~~~~A~~ 87 (211)
..+..+|++-+. .|+.=.++.++..- ..|++.|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 566778877664 46643333333322 23566777776 555555443
No 166
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=33.11 E-value=15 Score=30.63 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCeEEEcCCCCCCcHHH-H--HHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 30 GCNVYIGNLDEKVNERV-L--YDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~-L--~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
--.+|++++-..+..+- | ...|+.+-.+....++++.. +..++++|+.|.....-.++-..-+++ .+.-+.|++.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~K-ki~~~~VR~a 173 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKK-KIGKPPVRLA 173 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccc-cccCcceeec
Confidence 34567787777776654 3 67888888888888888875 788999999999888888777776776 6666655554
Q ss_pred e
Q 038096 107 L 107 (211)
Q Consensus 107 ~ 107 (211)
-
T Consensus 174 ~ 174 (290)
T KOG0226|consen 174 A 174 (290)
T ss_pred c
Confidence 3
No 167
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=32.95 E-value=1.7e+02 Score=21.48 Aligned_cols=46 Identities=22% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHhc-CCCeEE----EEEccCCCCCCCccEEEEEeCCHHHHH
Q 038096 40 EKVNERVLYDILIQ-AGRVVD----LYIPRDKETDKPKGFAFVEYESEEIGH 86 (211)
Q Consensus 40 ~~~~e~~L~~~F~~-~G~i~~----v~i~~d~~tg~~rg~aFV~f~~~~~A~ 86 (211)
..++.+||++-+++ |-.-.+ ..+-..-.+|++.|||.| |.+.+.|.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 36778888877754 332222 234344456888999988 56655544
No 168
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.84 E-value=68 Score=27.21 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.1
Q ss_pred CCeEEEcCCCCC------------CcHHHHHHHHhcCCCeEEEEEcc
Q 038096 30 GCNVYIGNLDEK------------VNERVLYDILIQAGRVVDLYIPR 64 (211)
Q Consensus 30 ~~~lfVgnLp~~------------~~e~~L~~~F~~~G~i~~v~i~~ 64 (211)
-.+|++.+||-. -+++-|+..|..||.|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 356888888732 35778999999999999887763
No 169
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.40 E-value=96 Score=21.89 Aligned_cols=50 Identities=16% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCH
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESE 82 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~ 82 (211)
..-+|||+++..+.+.--..+-+.++.-.-+-+..+ ....||+|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCCC
Confidence 567999999988876655554454444333333333 23349999988754
No 170
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=30.64 E-value=1.2e+02 Score=24.21 Aligned_cols=54 Identities=20% Similarity=0.074 Sum_probs=36.1
Q ss_pred CcHHHHHHHHhcCCC---eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC
Q 038096 42 VNERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY 99 (211)
Q Consensus 42 ~~e~~L~~~F~~~G~---i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~ 99 (211)
.+.+++.+.....|. |....+... |+.|+-|...-.+.++|..+.+.|=|. .+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~-~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGK-TLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTS-EEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCC-ceE
Confidence 356777777766553 667777654 555664444456889999998888787 665
No 171
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.39 E-value=1.1e+02 Score=28.05 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=43.0
Q ss_pred EEcCCCCCCc---HHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 34 YIGNLDEKVN---ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 34 fVgnLp~~~~---e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
+||||+.-.. ...|.++=.+||.|-.+++-. .-.|.-.+.+.|++|+.. ++. .+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~-~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDL-EFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCc-cccCCCC
Confidence 6899885433 345566666899999888832 247888999999999987 565 6777764
No 172
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.93 E-value=1.8e+02 Score=26.68 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=40.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHh----cCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILI----QAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFS 93 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~----~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln 93 (211)
+..+-++.-..+...-+|..+|. .+|.|+++.+...+. -..+...++.|.+.++|..|+..+.
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 44555543322233346777665 578888876655443 3345677889999999999987653
No 173
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.01 E-value=10 Score=34.05 Aligned_cols=77 Identities=10% Similarity=-0.133 Sum_probs=56.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.+.|+..|+...++++|.-+|..||.|.-+.+-.--..+..+-.+||.-.. ++|..+|..+.-. .+.|..++++.+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q-~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQ-TTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHh-hhhhhhhhhhcCc
Confidence 455777889999999999999999999887765544556667788887654 3466666655544 6777777777764
No 174
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.72 E-value=1.1e+02 Score=20.61 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=24.2
Q ss_pred CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 56 RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 56 ~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
.|.++... ..-+||-||+=.+.+++..|++.+.+.
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhcccce
Confidence 35555443 346799999999999999999887663
No 175
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=21.61 E-value=98 Score=20.07 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=24.6
Q ss_pred CcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEE
Q 038096 42 VNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFV 77 (211)
Q Consensus 42 ~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV 77 (211)
.-+.+|..+|-+--.|.++.|.--+. ..+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 34567888898888999998876553 34566666
No 176
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.57 E-value=1.9e+02 Score=19.96 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=27.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhc-CCCeEEEEEccCCCCCCCccEEEEEeCC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQ-AGRVVDLYIPRDKETDKPKGFAFVEYES 81 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~-~G~i~~v~i~~d~~tg~~rg~aFV~f~~ 81 (211)
..-+|||+++..+.|.--..+-+. .+.-.-+-+..+ ....||+|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~---~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSS---NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeC---CCCCCcEEEecCC
Confidence 567999999988776533333333 232222222222 3455899988765
No 177
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.35 E-value=1.3e+02 Score=19.53 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.3
Q ss_pred cEEEEEeCCHHHHHHHHHHcCCC
Q 038096 73 GFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 73 g~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
.+.+|.|.+..+|.+|-+.|...
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC
Confidence 46899999999999998887654
No 178
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.27 E-value=1.5e+02 Score=26.13 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCe-EEEEEccCCCC--CCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRV-VDLYIPRDKET--DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT 102 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i-~~v~i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~ 102 (211)
.+++.|.+||..+++.+|.+....+-.- ....+.....+ ..-.+.++|.|...++...-...++|.+.|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 5788899999999999888766554321 11122211110 1225788999999999888888888875555443
No 179
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=21.08 E-value=1.6e+02 Score=23.00 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCCCeEEEcCCCCC---CcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEE
Q 038096 28 NSGCNVYIGNLDEK---VNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFV 77 (211)
Q Consensus 28 ~~~~~lfVgnLp~~---~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV 77 (211)
.++|.|||.+|.-. +-...|.+++-+-|....+.---+-.-|..+..+|-
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~ 81 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFK 81 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcc
Confidence 34999999999843 445678888888887665432111122445555543
No 180
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.87 E-value=47 Score=29.54 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=48.1
Q ss_pred CCeEEEcCCCCCCcHH--------HHHHHHhc--CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHH
Q 038096 30 GCNVYIGNLDEKVNER--------VLYDILIQ--AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIK 90 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~--------~L~~~F~~--~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~ 90 (211)
.+.+|+.+.......+ ++..+|.. .+.+..+...++.....++|--|++|.....|++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567887777554444 88999988 6777778887777567788999999999999999874
No 181
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=20.70 E-value=76 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=44.1
Q ss_pred ccCCCCCCCCeEEEcCCCCCCcHHHHH-HHHhcCCCeEEEEEccCCCCCCC-ccEEEEEeCCHHHHHH
Q 038096 22 IMSGNSNSGCNVYIGNLDEKVNERVLY-DILIQAGRVVDLYIPRDKETDKP-KGFAFVEYESEEIGHY 87 (211)
Q Consensus 22 ~~~~~s~~~~~lfVgnLp~~~~e~~L~-~~F~~~G~i~~v~i~~d~~tg~~-rg~aFV~f~~~~~A~~ 87 (211)
.|-..|.++++|||.+-=+..-++++. ++.++-|.+..|.|-+++. |.+ .-=.||.|.++..-..
T Consensus 392 QMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~~g-~~~lN~~flvDf~~ep~gPs 458 (476)
T KOG0918|consen 392 QMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTVKG-GLSLNPDFLVDFGKEPDGPS 458 (476)
T ss_pred eeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeeccCC-ceeeCccceEEccCCCCCcc
Confidence 444567889999999877776666665 6667888899998866553 221 2234788887554333
No 182
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.55 E-value=2.5e+02 Score=18.06 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCeEEEEEccCCCCCCC-ccEEEEEeCCHHHHHHHHHHcC
Q 038096 45 RVLYDILIQAGRVVDLYIPRDKETDKP-KGFAFVEYESEEIGHYAIKLFS 93 (211)
Q Consensus 45 ~~L~~~F~~~G~i~~v~i~~d~~tg~~-rg~aFV~f~~~~~A~~Ai~~ln 93 (211)
+++.+.+.++| +....+ +|-. .++.|+.+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677778888 434444 1332 4677888879999888887663
No 183
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.45 E-value=2.8e+02 Score=19.22 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=29.8
Q ss_pred eEEEcCCCCCCcHHHH---HHHHhcCCCeEEEEE--ccCCCCCCCccEEEEEeC
Q 038096 32 NVYIGNLDEKVNERVL---YDILIQAGRVVDLYI--PRDKETDKPKGFAFVEYE 80 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L---~~~F~~~G~i~~v~i--~~d~~tg~~rg~aFV~f~ 80 (211)
..|+.+||..+-+.++ +..|..++.-..|.+ ......+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 3589999999988766 455666665445443 223344667788766553
No 184
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.38 E-value=41 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=15.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH
Q 038096 27 SNSGCNVYIGNLDEKVNERVLY 48 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~ 48 (211)
+.-++.+|||++|..+-++.=.
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~ 45 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRK 45 (67)
T ss_pred HHcCceEEECCCChHHHHcCcc
Confidence 3447999999999776555433
No 185
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=92 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=26.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEcc
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR 64 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~ 64 (211)
.....|+|||++++-.-+..++...-.+....++.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence 34667999999999999999988766554554443
Done!