Query 038096
Match_columns 211
No_of_seqs 244 out of 1684
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 12:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 2.4E-24 8.2E-29 153.2 11.3 82 28-110 17-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 6.2E-23 2.1E-27 148.6 11.3 86 28-114 4-89 (110)
3 2lxi_A RNA-binding protein 10; 99.9 3E-23 1E-27 145.2 8.5 84 30-113 1-85 (91)
4 3md1_A Nuclear and cytoplasmic 99.9 6.3E-22 2.1E-26 135.3 11.3 82 30-112 1-82 (83)
5 1whw_A Hypothetical protein ri 99.9 1.3E-21 4.3E-26 138.4 12.9 86 28-114 6-91 (99)
6 2lkz_A RNA-binding protein 5; 99.9 1.3E-22 4.3E-27 143.2 7.6 82 29-110 8-94 (95)
7 2dgo_A Cytotoxic granule-assoc 99.9 2.2E-21 7.7E-26 140.8 14.4 87 28-115 13-99 (115)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 5.4E-22 1.9E-26 136.8 10.6 83 28-111 4-86 (87)
9 2x1f_A MRNA 3'-END-processing 99.9 1E-21 3.6E-26 138.2 12.0 83 30-113 2-84 (96)
10 2dnz_A Probable RNA-binding pr 99.9 1.1E-21 3.7E-26 137.6 11.6 86 28-114 3-88 (95)
11 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.1E-21 3.6E-26 139.5 11.2 88 27-115 9-96 (102)
12 3mdf_A Peptidyl-prolyl CIS-tra 99.9 9.2E-22 3.1E-26 135.1 10.4 81 28-109 5-85 (85)
13 1x5t_A Splicing factor 3B subu 99.9 1.1E-21 3.6E-26 137.9 10.9 86 28-114 3-89 (96)
14 2dgs_A DAZ-associated protein 99.9 2E-21 6.8E-26 137.4 12.2 85 28-114 8-92 (99)
15 2cq0_A Eukaryotic translation 99.9 1.3E-21 4.4E-26 139.4 11.3 87 27-114 12-98 (103)
16 2do4_A Squamous cell carcinoma 99.9 2.1E-21 7.2E-26 137.5 12.1 85 27-113 14-98 (100)
17 1x5u_A Splicing factor 3B subu 99.9 1.9E-21 6.6E-26 138.8 11.7 86 28-114 13-98 (105)
18 2dnm_A SRP46 splicing factor; 99.9 1.3E-21 4.3E-26 139.4 10.5 87 27-114 10-96 (103)
19 2e5h_A Zinc finger CCHC-type a 99.9 2.4E-21 8.1E-26 135.6 11.7 82 27-109 13-94 (94)
20 1x4h_A RNA-binding protein 28; 99.9 2.9E-21 1E-25 139.1 12.3 86 28-114 13-104 (111)
21 2cpz_A CUG triplet repeat RNA- 99.9 1.7E-21 5.7E-26 141.6 11.0 86 28-114 23-108 (115)
22 2cpf_A RNA binding motif prote 99.9 1.5E-21 5E-26 137.7 10.4 86 28-114 3-91 (98)
23 2div_A TRNA selenocysteine ass 99.9 1.3E-21 4.4E-26 138.3 9.9 85 27-112 6-95 (99)
24 4a8x_A RNA-binding protein wit 99.9 1.5E-21 5.3E-26 134.7 10.1 84 28-112 2-86 (88)
25 4f25_A Polyadenylate-binding p 99.9 1.6E-21 5.4E-26 142.0 10.4 81 30-113 5-85 (115)
26 2cph_A RNA binding motif prote 99.9 3.4E-21 1.2E-25 137.9 11.9 87 27-114 12-100 (107)
27 1oo0_B CG8781-PA, drosophila Y 99.9 2.1E-21 7.2E-26 139.8 10.8 85 27-112 23-107 (110)
28 3p5t_L Cleavage and polyadenyl 99.9 1.9E-22 6.6E-27 140.5 5.1 81 31-112 2-84 (90)
29 2cqc_A Arginine/serine-rich sp 99.9 2.9E-21 9.8E-26 135.3 11.1 82 28-110 13-94 (95)
30 1x5s_A Cold-inducible RNA-bind 99.9 1.6E-21 5.6E-26 138.5 9.9 87 27-114 9-95 (102)
31 1p27_B RNA-binding protein 8A; 99.9 1.3E-21 4.4E-26 140.0 9.4 85 27-112 20-104 (106)
32 2do0_A HnRNP M, heterogeneous 99.9 1E-20 3.5E-25 137.0 14.1 85 28-114 13-97 (114)
33 1u6f_A Tcubp1, RNA-binding pro 99.9 5E-21 1.7E-25 143.4 12.5 88 27-115 39-126 (139)
34 2fy1_A RNA-binding motif prote 99.9 5.2E-21 1.8E-25 139.6 12.0 84 28-113 5-88 (116)
35 2dgp_A Bruno-like 4, RNA bindi 99.9 2.6E-21 8.8E-26 138.4 10.2 86 28-114 11-99 (106)
36 2cpe_A RNA-binding protein EWS 99.9 5.3E-21 1.8E-25 138.4 11.7 87 27-114 12-106 (113)
37 2la6_A RNA-binding protein FUS 99.9 2.1E-21 7.3E-26 137.3 9.3 82 27-109 10-99 (99)
38 3ns6_A Eukaryotic translation 99.9 7.7E-22 2.6E-26 140.2 7.0 80 30-110 6-92 (100)
39 2dgx_A KIAA0430 protein; RRM d 99.9 7.6E-21 2.6E-25 134.0 11.9 81 28-112 7-91 (96)
40 3n9u_C Cleavage and polyadenyl 99.9 3.5E-21 1.2E-25 147.7 11.0 82 29-111 54-137 (156)
41 2khc_A Testis-specific RNP-typ 99.9 6.8E-21 2.3E-25 138.8 12.0 81 28-109 38-118 (118)
42 2kxn_B Transformer-2 protein h 99.9 1.8E-21 6.2E-26 144.7 9.1 86 27-113 43-128 (129)
43 2dis_A Unnamed protein product 99.9 5.7E-21 2E-25 137.3 11.4 86 27-113 5-94 (109)
44 3ucg_A Polyadenylate-binding p 99.9 6E-21 2.1E-25 132.1 10.9 81 30-112 6-86 (89)
45 3s7r_A Heterogeneous nuclear r 99.8 7.6E-21 2.6E-25 131.2 11.1 79 28-108 9-87 (87)
46 2dng_A Eukaryotic translation 99.8 9.3E-21 3.2E-25 135.0 11.6 84 28-114 13-96 (103)
47 2dnh_A Bruno-like 5, RNA bindi 99.8 7.5E-21 2.6E-25 135.7 11.0 85 28-114 13-100 (105)
48 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-20 3.8E-25 134.8 11.7 85 28-115 13-98 (104)
49 2d9p_A Polyadenylate-binding p 99.8 6.3E-21 2.2E-25 135.7 10.3 84 28-114 13-96 (103)
50 2cqd_A RNA-binding region cont 99.8 3.9E-20 1.3E-24 134.5 14.5 83 28-112 15-97 (116)
51 2jrs_A RNA-binding protein 39; 99.8 4.4E-21 1.5E-25 138.2 9.3 83 28-111 24-106 (108)
52 3ex7_B RNA-binding protein 8A; 99.8 5.3E-21 1.8E-25 141.0 9.8 86 27-113 19-104 (126)
53 1sjq_A Polypyrimidine tract-bi 99.8 7E-21 2.4E-25 136.4 10.1 82 26-114 12-95 (105)
54 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-20 4.1E-25 136.1 11.3 84 28-113 23-106 (109)
55 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.7E-20 9.4E-25 132.4 13.0 84 28-114 13-96 (103)
56 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-20 5.5E-25 143.5 12.4 85 28-113 37-121 (156)
57 2dh8_A DAZ-associated protein 99.8 7.2E-21 2.5E-25 135.9 9.7 84 28-113 14-97 (105)
58 3ulh_A THO complex subunit 4; 99.8 1.7E-20 5.9E-25 134.3 11.4 81 27-109 26-106 (107)
59 2dhg_A TRNA selenocysteine ass 99.8 6.6E-21 2.2E-25 135.8 8.9 85 28-114 7-93 (104)
60 2ywk_A Putative RNA-binding pr 99.8 1.2E-20 4.2E-25 132.2 10.1 81 28-110 14-94 (95)
61 2cq3_A RNA-binding protein 9; 99.8 5.2E-20 1.8E-24 131.0 13.4 84 27-113 12-95 (103)
62 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-20 5.8E-25 130.7 10.5 83 28-113 6-88 (92)
63 2cq4_A RNA binding motif prote 99.8 9.6E-21 3.3E-25 137.3 9.4 83 29-113 24-106 (114)
64 2mss_A Protein (musashi1); RNA 99.8 4E-21 1.4E-25 129.0 6.8 75 32-108 1-75 (75)
65 1x4e_A RNA binding motif, sing 99.8 1.7E-21 5.7E-26 134.0 4.5 81 28-109 3-83 (85)
66 1p1t_A Cleavage stimulation fa 99.8 6.7E-21 2.3E-25 135.7 7.7 84 30-114 8-91 (104)
67 1s79_A Lupus LA protein; RRM, 99.8 7.4E-21 2.5E-25 136.0 7.8 79 29-110 10-88 (103)
68 2kn4_A Immunoglobulin G-bindin 99.8 2.4E-20 8.1E-25 142.6 11.1 85 28-113 68-152 (158)
69 2cqg_A TDP-43, TAR DNA-binding 99.8 6.2E-20 2.1E-24 130.6 12.5 83 28-113 13-95 (103)
70 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.9E-21 2E-25 135.5 7.1 81 28-111 17-98 (100)
71 2cpi_A CCR4-NOT transcription 99.8 1.7E-20 5.8E-25 135.6 9.5 84 28-112 13-102 (111)
72 2cqp_A RNA-binding protein 12; 99.8 7.3E-21 2.5E-25 134.1 7.4 83 28-111 13-95 (98)
73 2kt5_A RNA and export factor-b 99.8 6.7E-20 2.3E-24 134.8 12.6 83 28-112 33-115 (124)
74 1x4b_A Heterogeneous nuclear r 99.8 3E-20 1E-24 135.1 10.5 83 30-114 27-109 (116)
75 1x4a_A Splicing factor, argini 99.8 7.9E-20 2.7E-24 131.4 12.6 83 28-114 20-102 (109)
76 2jwn_A Embryonic polyadenylate 99.8 3.3E-20 1.1E-24 136.3 10.7 82 30-113 36-117 (124)
77 2dgw_A Probable RNA-binding pr 99.8 6.1E-20 2.1E-24 127.8 11.4 81 28-112 8-88 (91)
78 2ek1_A RNA-binding protein 12; 99.8 7.6E-21 2.6E-25 133.2 6.7 81 28-109 13-93 (95)
79 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.7E-20 1.6E-24 137.8 11.4 81 27-108 60-140 (140)
80 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.1E-21 2.1E-25 128.5 5.8 76 31-108 1-76 (77)
81 2m2b_A RNA-binding protein 10; 99.8 1.2E-20 4.1E-25 140.3 7.9 85 28-113 21-110 (131)
82 2err_A Ataxin-2-binding protei 99.8 3.8E-20 1.3E-24 133.4 10.3 82 27-111 26-107 (109)
83 2nlw_A Eukaryotic translation 99.8 4.1E-20 1.4E-24 132.3 9.9 80 29-111 14-100 (105)
84 2ki2_A SS-DNA binding protein 99.8 3.3E-21 1.1E-25 133.9 3.9 80 31-112 2-81 (90)
85 1x4d_A Matrin 3; structural ge 99.8 3.7E-20 1.3E-24 132.2 9.3 81 28-114 13-95 (102)
86 1x5o_A RNA binding motif, sing 99.8 7.5E-20 2.6E-24 132.5 11.0 82 28-111 23-112 (114)
87 2cpy_A RNA-binding protein 12; 99.8 3.2E-20 1.1E-24 134.8 8.6 82 28-112 13-95 (114)
88 2lea_A Serine/arginine-rich sp 99.8 1.6E-20 5.5E-25 140.6 7.2 86 28-114 45-130 (135)
89 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7E-20 2.4E-24 141.3 10.8 86 27-113 69-154 (165)
90 2fc9_A NCL protein; structure 99.8 1.5E-19 5.1E-24 128.1 11.5 82 27-113 12-93 (101)
91 2wbr_A GW182, gawky, LD47780P; 99.8 1.1E-19 3.7E-24 125.4 10.2 74 29-109 6-79 (89)
92 3q2s_C Cleavage and polyadenyl 99.8 2.9E-20 9.8E-25 151.0 8.5 82 29-111 67-150 (229)
93 2cq1_A PTB-like protein L; RRM 99.8 2E-19 6.7E-24 128.2 11.7 80 28-114 13-94 (101)
94 2cpx_A Hypothetical protein FL 99.8 1.9E-20 6.5E-25 135.8 6.2 82 28-114 23-108 (115)
95 3r27_A HnRNP L, heterogeneous 99.8 1.4E-19 4.7E-24 128.5 10.5 79 27-111 18-97 (100)
96 1wg5_A Heterogeneous nuclear r 99.8 1.1E-19 3.7E-24 129.9 9.8 81 28-111 13-94 (104)
97 1why_A Hypothetical protein ri 99.8 2.1E-19 7.1E-24 126.5 11.1 81 26-113 13-95 (97)
98 1wel_A RNA-binding protein 12; 99.8 1.6E-20 5.4E-25 138.3 5.4 82 28-111 23-104 (124)
99 2jvr_A Nucleolar protein 3; RN 99.8 9.9E-20 3.4E-24 131.9 9.4 79 28-111 26-105 (111)
100 1x4g_A Nucleolysin TIAR; struc 99.8 2.8E-19 9.6E-24 128.6 11.6 80 27-113 22-101 (109)
101 2ad9_A Polypyrimidine tract-bi 99.8 8.4E-20 2.9E-24 133.7 8.9 81 28-114 29-110 (119)
102 1x4c_A Splicing factor, argini 99.8 3.5E-19 1.2E-23 128.0 12.1 78 29-114 14-96 (108)
103 1iqt_A AUF1, heterogeneous nuc 99.8 2.4E-20 8.1E-25 125.1 5.4 75 32-108 1-75 (75)
104 2a3j_A U1 small nuclear ribonu 99.8 1.1E-19 3.8E-24 134.7 9.5 82 28-113 27-112 (127)
105 2krb_A Eukaryotic translation 99.8 3.3E-20 1.1E-24 126.5 6.1 73 30-105 1-80 (81)
106 2fc8_A NCL protein; structure 99.8 2.1E-19 7.1E-24 127.5 10.5 84 27-114 12-95 (102)
107 2db1_A Heterogeneous nuclear r 99.8 7.5E-20 2.6E-24 133.8 8.0 81 28-111 15-98 (118)
108 1fj7_A Nucleolin RBD1, protein 99.8 9.1E-21 3.1E-25 134.5 3.0 83 28-113 15-97 (101)
109 2dnq_A RNA-binding protein 4B; 99.8 3.4E-19 1.2E-23 123.7 10.9 78 28-114 6-83 (90)
110 1wez_A HnRNP H', FTP-3, hetero 99.8 8E-20 2.7E-24 130.4 7.6 81 28-112 13-93 (102)
111 1wex_A Hypothetical protein (r 99.8 2.6E-19 9.1E-24 128.2 10.1 81 28-114 13-94 (104)
112 2la4_A Nuclear and cytoplasmic 99.8 1.5E-19 5E-24 128.2 8.5 77 27-110 24-100 (101)
113 2hgl_A HNRPF protein, heteroge 99.8 8.3E-20 2.8E-24 136.9 7.5 80 28-110 42-124 (136)
114 4f02_A Polyadenylate-binding p 99.8 3.4E-19 1.1E-23 142.7 11.4 84 28-112 13-96 (213)
115 2e5j_A Methenyltetrahydrofolat 99.8 1.8E-19 6.2E-24 126.9 8.7 80 28-113 17-96 (97)
116 1nu4_A U1A RNA binding domain; 99.8 1.6E-19 5.4E-24 126.9 8.3 82 28-113 6-91 (97)
117 2xnq_A Nuclear polyadenylated 99.8 7.8E-19 2.7E-23 123.9 11.4 76 27-111 19-95 (97)
118 2dgt_A RNA-binding protein 30; 99.8 1.3E-18 4.5E-23 121.3 12.2 79 27-114 7-85 (92)
119 2jvo_A Nucleolar protein 3; nu 99.8 5.2E-19 1.8E-23 127.4 10.2 77 28-113 29-105 (108)
120 2dnn_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 127.9 10.0 77 30-110 16-92 (109)
121 2lcw_A RNA-binding protein FUS 99.7 7E-21 2.4E-25 138.5 0.0 87 28-115 5-99 (116)
122 2dgu_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 123.0 12.7 79 28-115 9-87 (103)
123 2lmi_A GRSF-1, G-rich sequence 99.8 8.1E-20 2.8E-24 131.2 5.6 81 28-111 9-92 (107)
124 3lqv_A PRE-mRNA branch site pr 99.8 5.8E-19 2E-23 127.9 10.1 82 28-113 6-87 (115)
125 2ytc_A PRE-mRNA-splicing facto 99.8 7.7E-19 2.6E-23 120.4 10.2 75 28-109 10-85 (85)
126 2dnp_A RNA-binding protein 14; 99.8 1.2E-18 4.2E-23 120.9 11.3 78 27-113 6-83 (90)
127 2hvz_A Splicing factor, argini 99.8 3.7E-19 1.3E-23 126.1 8.8 78 31-114 1-78 (101)
128 1x4f_A Matrin 3; structural ge 99.8 3.1E-19 1.1E-23 129.3 8.5 82 27-114 22-105 (112)
129 2cpj_A Non-POU domain-containi 99.8 5.6E-19 1.9E-23 124.8 9.5 80 28-114 13-92 (99)
130 2xs2_A Deleted in azoospermia- 99.8 2.1E-19 7.2E-24 127.6 6.9 80 29-112 8-87 (102)
131 1fjc_A Nucleolin RBD2, protein 99.8 2.7E-19 9.2E-24 125.6 7.1 80 28-113 14-93 (96)
132 1fxl_A Paraneoplastic encephal 99.8 1.5E-18 5.1E-23 132.2 11.7 82 30-112 2-83 (167)
133 1b7f_A Protein (SXL-lethal pro 99.8 1.1E-18 3.7E-23 133.4 10.8 83 29-112 2-84 (168)
134 1wf1_A RNA-binding protein RAL 99.8 1.6E-18 5.5E-23 124.8 11.0 76 29-113 26-102 (110)
135 2f3j_A RNA and export factor b 99.8 5E-19 1.7E-23 138.3 8.9 83 28-112 86-168 (177)
136 2cqh_A IGF-II mRNA-binding pro 99.8 7.9E-19 2.7E-23 122.5 9.0 78 28-113 6-85 (93)
137 3md3_A Nuclear and cytoplasmic 99.8 1.8E-18 6.1E-23 131.7 11.6 81 28-109 85-165 (166)
138 2cpd_A Apobec-1 stimulating pr 99.8 5E-18 1.7E-22 119.8 12.7 77 28-113 13-91 (99)
139 2j8a_A Histone-lysine N-methyl 99.8 6.8E-19 2.3E-23 129.4 7.9 80 31-111 3-96 (136)
140 2i2y_A Fusion protein consists 99.8 1.3E-18 4.3E-23 132.1 9.3 79 28-112 71-149 (150)
141 1x5p_A Negative elongation fac 99.8 6.8E-18 2.3E-22 118.8 12.4 77 28-113 13-89 (97)
142 2cq2_A Hypothetical protein LO 99.8 4E-18 1.4E-22 123.7 11.2 79 26-111 21-106 (114)
143 2dha_A FLJ20171 protein; RRM d 99.8 5E-19 1.7E-23 130.5 6.5 80 28-110 21-104 (123)
144 1wg1_A KIAA1579 protein, homol 99.8 1.6E-18 5.4E-23 120.0 8.7 76 29-112 4-79 (88)
145 2e5g_A U6 snRNA-specific termi 99.8 3E-18 1E-22 119.9 10.2 77 29-112 7-83 (94)
146 2kvi_A Nuclear polyadenylated 99.8 7.9E-19 2.7E-23 123.5 7.1 78 27-113 7-85 (96)
147 2hgn_A Heterogeneous nuclear r 99.8 2.3E-19 7.7E-24 135.0 4.5 81 28-112 44-124 (139)
148 3egn_A RNA-binding protein 40; 99.8 2.2E-19 7.5E-24 135.2 4.4 85 28-113 43-132 (143)
149 2hgm_A HNRPF protein, heteroge 99.8 9.3E-19 3.2E-23 129.5 7.6 79 28-110 40-120 (126)
150 3pgw_S U1-70K; protein-RNA com 99.8 2.6E-18 8.8E-23 151.6 11.6 83 29-112 101-183 (437)
151 2e44_A Insulin-like growth fac 99.8 1.9E-18 6.4E-23 121.2 8.5 78 29-111 14-92 (96)
152 2dnl_A Cytoplasmic polyadenyla 99.8 3E-18 1E-22 124.3 9.6 79 28-110 6-87 (114)
153 1whx_A Hypothetical protein ri 99.8 1.8E-18 6.1E-23 125.1 8.3 75 30-111 10-84 (111)
154 2g4b_A Splicing factor U2AF 65 99.8 3.3E-18 1.1E-22 131.3 10.1 80 29-109 93-172 (172)
155 2yh0_A Splicing factor U2AF 65 99.8 4.6E-18 1.6E-22 133.4 11.0 85 28-113 112-196 (198)
156 1l3k_A Heterogeneous nuclear r 99.8 4.4E-18 1.5E-22 133.3 10.5 83 28-112 11-93 (196)
157 3d2w_A TAR DNA-binding protein 99.8 6.6E-18 2.3E-22 117.4 10.1 77 28-113 9-86 (89)
158 2qfj_A FBP-interacting repress 99.7 5.6E-18 1.9E-22 134.6 10.7 83 28-111 123-205 (216)
159 2cjk_A Nuclear polyadenylated 99.7 2.5E-18 8.4E-23 131.4 7.7 80 30-111 87-166 (167)
160 3beg_B Splicing factor, argini 99.7 3.6E-18 1.2E-22 124.2 7.8 75 29-111 15-94 (115)
161 1l3k_A Heterogeneous nuclear r 99.7 9.8E-18 3.3E-22 131.3 10.7 84 29-114 103-186 (196)
162 4f02_A Polyadenylate-binding p 99.7 7.4E-18 2.5E-22 134.8 10.1 81 30-113 103-183 (213)
163 1sjr_A Polypyrimidine tract-bi 99.7 7.9E-18 2.7E-22 129.4 9.7 78 30-112 46-125 (164)
164 3zzy_A Polypyrimidine tract-bi 99.7 1.7E-17 5.9E-22 123.0 10.7 77 30-112 28-107 (130)
165 2qfj_A FBP-interacting repress 99.7 1.1E-17 3.7E-22 133.0 9.9 82 30-112 28-109 (216)
166 1wf0_A TDP-43, TAR DNA-binding 99.7 6E-18 2E-22 116.9 7.2 79 28-114 3-81 (88)
167 3tyt_A Heterogeneous nuclear r 99.7 2E-17 6.8E-22 132.0 11.3 78 29-112 3-81 (205)
168 2diu_A KIAA0430 protein; struc 99.7 1.3E-17 4.5E-22 116.1 8.7 76 28-114 6-87 (96)
169 3md3_A Nuclear and cytoplasmic 99.7 1.5E-17 5.3E-22 126.4 10.0 80 31-112 1-80 (166)
170 2hzc_A Splicing factor U2AF 65 99.7 1.8E-17 6.1E-22 113.9 8.8 72 28-107 4-86 (87)
171 2e5i_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 120.2 11.2 74 32-112 27-103 (124)
172 1b7f_A Protein (SXL-lethal pro 99.7 2.6E-17 9E-22 125.7 10.2 80 28-108 87-168 (168)
173 2bz2_A Negative elongation fac 99.7 1.8E-17 6.1E-22 121.7 8.7 77 27-112 36-112 (121)
174 2cjk_A Nuclear polyadenylated 99.7 1.8E-17 6.2E-22 126.5 9.0 81 29-112 2-82 (167)
175 1fxl_A Paraneoplastic encephal 99.7 3.2E-17 1.1E-21 124.8 9.4 79 29-108 87-167 (167)
176 3nmr_A Cugbp ELAV-like family 99.7 4.4E-17 1.5E-21 125.1 10.0 80 28-109 93-175 (175)
177 3nmr_A Cugbp ELAV-like family 99.7 2.6E-17 8.9E-22 126.3 8.4 83 29-112 2-89 (175)
178 2pe8_A Splicing factor 45; RRM 99.7 1.1E-16 3.7E-21 114.7 11.1 81 29-110 7-93 (105)
179 3pgw_A U1-A; protein-RNA compl 99.7 1.1E-16 3.6E-21 132.7 11.9 82 27-112 6-91 (282)
180 2voo_A Lupus LA protein; RNA-b 99.7 1.2E-16 4.1E-21 126.4 10.6 80 30-112 109-188 (193)
181 1fje_B Nucleolin RBD12, protei 99.7 1.3E-16 4.4E-21 122.9 9.4 77 29-111 98-174 (175)
182 2ghp_A U4/U6 snRNA-associated 99.7 1.9E-16 6.7E-21 131.8 10.4 82 28-111 208-291 (292)
183 3u1l_A PRE-mRNA-splicing facto 99.7 1.3E-16 4.4E-21 130.0 8.8 78 28-112 132-230 (240)
184 3smz_A Protein raver-1, ribonu 99.7 3.7E-16 1.3E-20 129.6 11.4 85 27-112 92-176 (284)
185 2adc_A Polypyrimidine tract-bi 99.7 2.4E-16 8.3E-21 127.3 9.1 78 28-111 32-110 (229)
186 3smz_A Protein raver-1, ribonu 99.7 4.6E-16 1.6E-20 129.0 10.9 84 28-113 182-266 (284)
187 3pgw_A U1-A; protein-RNA compl 99.6 7.4E-16 2.5E-20 127.6 11.1 76 28-109 205-281 (282)
188 1fje_B Nucleolin RBD12, protei 99.6 7.9E-17 2.7E-21 124.1 4.4 83 27-112 10-92 (175)
189 1qm9_A Polypyrimidine tract-bi 99.6 3E-16 1E-20 123.4 7.7 77 30-112 3-80 (198)
190 1jmt_A Splicing factor U2AF 35 99.6 3.1E-16 1E-20 112.1 5.2 73 34-108 19-103 (104)
191 2dit_A HIV TAT specific factor 99.6 4.1E-15 1.4E-19 107.3 11.1 80 28-112 13-103 (112)
192 3tyt_A Heterogeneous nuclear r 99.6 9.3E-16 3.2E-20 122.3 7.9 78 28-108 121-204 (205)
193 3v4m_A Splicing factor U2AF 65 99.6 3.3E-15 1.1E-19 106.9 9.7 81 29-110 4-96 (105)
194 2ghp_A U4/U6 snRNA-associated 99.6 2.6E-15 8.8E-20 124.9 9.8 83 29-113 116-199 (292)
195 2yh0_A Splicing factor U2AF 65 99.6 3.5E-15 1.2E-19 116.8 9.8 76 29-112 3-89 (198)
196 1qm9_A Polypyrimidine tract-bi 99.6 1.9E-15 6.6E-20 118.8 8.2 78 28-111 118-197 (198)
197 2g4b_A Splicing factor U2AF 65 99.6 3.2E-15 1.1E-19 114.5 9.1 75 29-111 3-88 (172)
198 3sde_A Paraspeckle component 1 99.6 3.3E-15 1.1E-19 122.9 9.5 85 28-113 94-181 (261)
199 2adc_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 117.3 12.1 78 28-111 149-228 (229)
200 3sde_A Paraspeckle component 1 99.6 4.5E-15 1.6E-19 122.1 9.9 77 28-111 20-96 (261)
201 3ue2_A Poly(U)-binding-splicin 99.6 1E-14 3.6E-19 106.4 8.7 81 29-110 19-108 (118)
202 3tht_A Alkylated DNA repair pr 99.5 3.6E-14 1.2E-18 121.2 10.7 77 26-109 14-97 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 7.5E-14 2.6E-18 98.9 8.6 66 40-113 27-92 (100)
204 3s6e_A RNA-binding protein 39; 99.4 5.5E-13 1.9E-17 96.7 7.5 76 30-110 7-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 8.7E-12 3E-16 85.9 9.3 76 28-113 5-88 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1E-11 3.6E-16 90.5 8.3 76 28-109 16-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 7.8E-11 2.7E-15 81.6 5.8 71 28-108 13-92 (95)
208 3dxb_A Thioredoxin N-terminall 99.1 1.3E-10 4.5E-15 93.0 7.8 68 42-110 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.9E-07 9.8E-12 65.1 9.1 73 29-108 20-97 (117)
210 1wey_A Calcipressin 1; structu 97.7 0.00039 1.3E-08 48.7 9.6 73 30-109 5-82 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.6 0.0015 5E-08 45.7 11.6 70 29-108 7-81 (104)
212 1uw4_A UPF3X; nonsense mediate 97.5 0.0013 4.4E-08 45.1 9.9 78 31-108 2-85 (91)
213 1whv_A Poly(A)-specific ribonu 97.3 0.00062 2.1E-08 47.0 6.2 54 30-92 16-69 (100)
214 3ctr_A Poly(A)-specific ribonu 97.2 0.00044 1.5E-08 47.9 4.8 54 31-93 7-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.0 0.0051 1.7E-07 44.1 8.9 72 28-108 22-94 (119)
216 2l08_A Regulator of nonsense t 96.6 0.0098 3.3E-07 41.1 7.5 79 30-108 9-93 (97)
217 2kn4_A Immunoglobulin G-bindin 96.4 0.0018 6.2E-08 48.2 3.2 35 59-95 2-36 (158)
218 3p3d_A Nucleoporin 53; structu 96.4 0.0065 2.2E-07 44.2 5.7 77 30-109 7-97 (132)
219 3pq1_A Poly(A) RNA polymerase; 96.2 0.0021 7.3E-08 56.6 3.0 56 30-91 53-108 (464)
220 2i2y_A Fusion protein consists 95.7 0.004 1.4E-07 45.9 1.8 41 69-111 10-51 (150)
221 3d45_A Poly(A)-specific ribonu 90.5 0.62 2.1E-05 41.4 7.2 55 30-93 440-494 (507)
222 4f25_A Polyadenylate-binding p 71.0 0.93 3.2E-05 31.4 0.2 18 29-46 96-113 (115)
223 2g0c_A ATP-dependent RNA helic 65.3 15 0.00053 23.0 5.3 68 32-109 2-75 (76)
224 3ts2_A Protein LIN-28 homolog 47.0 3.2 0.00011 30.5 -0.6 28 45-80 2-29 (148)
225 3mfb_A Uncharacterized protein 35.5 49 0.0017 24.4 4.4 37 42-78 3-42 (157)
226 1xn9_A 30S ribosomal protein S 27.8 93 0.0032 21.1 4.4 48 40-88 28-80 (101)
227 4e8u_A Putative uncharacterize 26.9 1E+02 0.0035 23.1 4.9 49 32-83 14-73 (172)
228 1ywx_A 30S ribosomal protein S 26.4 1.1E+02 0.0038 20.7 4.6 47 40-87 28-79 (102)
229 2v94_A RPS24, 30S ribosomal pr 26.3 1.1E+02 0.0037 21.0 4.6 47 40-87 37-88 (107)
230 4eyt_A Telomerase associated p 25.2 1.6E+02 0.0053 19.7 9.6 55 30-92 12-66 (129)
231 3pgw_S U1-70K; protein-RNA com 25.1 6.6 0.00023 34.0 -2.3 38 47-84 9-53 (437)
232 3fut_A Dimethyladenosine trans 23.0 68 0.0023 25.5 3.6 34 30-64 110-143 (271)
233 2e5p_A Protein PHF1, PHD finge 21.5 51 0.0018 20.6 1.9 12 71-82 36-47 (68)
234 3uzu_A Ribosomal RNA small sub 20.4 45 0.0015 26.7 1.9 34 31-64 115-148 (279)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=153.18 Aligned_cols=82 Identities=22% Similarity=0.405 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.++++|||+|||+++++++|+++|++||.|.+|.|++|+.||+++|||||+|.+.++|++||+.|||. .|+|+.|+|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL-RLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCC
Q 038096 108 SGQ 110 (211)
Q Consensus 108 a~~ 110 (211)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 864
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=6.2e-23 Score=148.59 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
++.++|||+||++++++++|+++|++||.|.+|.|++|+.|++++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~-~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT-SVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
|......
T Consensus 83 a~~~~~~ 89 (110)
T 3s8s_A 83 DIKGQQR 89 (110)
T ss_dssp CSTTHHH
T ss_pred CCCCcHH
Confidence 9766543
No 3
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=145.20 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+++|||+|||++++|++|+++|++|| .|.+|+|++|+.||.++|||||+|.+.++|++||+.+++...++|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 89999999999999999999999999999999999875544899999999999
Q ss_pred CCCcc
Q 038096 109 GQDKN 113 (211)
Q Consensus 109 ~~~~~ 113 (211)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.87 E-value=6.3e-22 Score=135.32 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=78.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+.+|||+|||.++++++|+++|++||.|.++.|+.++.+|.++|||||+|.+.++|++|++.|||. .++|+.|+|.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC-eeCCcEEEEEecC
Confidence 368999999999999999999999999999999999999999999999999999999999999998 9999999999997
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=138.35 Aligned_cols=86 Identities=29% Similarity=0.360 Sum_probs=81.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ-VFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE-ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 45799999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876553
No 6
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-22 Score=143.25 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCC--eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC---eeeCCeEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGR--VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI---VTLYNRTL 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~--i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~---~~i~gr~l 103 (211)
.-.+|||+|||+++|+++|+++|++||. |.+|+|++|+.||++||||||+|.+.++|++||+.|||. +.|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3678999999999999999999999995 678999999999999999999999999999999999986 35999999
Q ss_pred EEEecCC
Q 038096 104 RFALSGQ 110 (211)
Q Consensus 104 ~v~~a~~ 110 (211)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.87 E-value=2.2e-21 Score=140.78 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=81.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 45799999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCccCC
Q 038096 108 SGQDKNAQ 115 (211)
Q Consensus 108 a~~~~~~~ 115 (211)
+.......
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 98765543
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.87 E-value=5.4e-22 Score=136.81 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||.++++++|+++|++||.|.++.|+.++.++.++|||||+|.+.++|++|++.|||. .++|+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEe
Confidence 45789999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8653
No 9
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.87 E-value=1e-21 Score=138.17 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=79.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+++|||+|||.++++++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|++|++.|||. .++|+.|+|.+|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-QLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEEcC
Confidence 689999999999999999999999999999999999999999999999999999999999999998 9999999999997
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=137.57 Aligned_cols=86 Identities=21% Similarity=0.491 Sum_probs=81.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||.++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF-ELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.+....
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9776543
No 11
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=139.50 Aligned_cols=88 Identities=35% Similarity=0.564 Sum_probs=82.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCccCC
Q 038096 107 LSGQDKNAQ 115 (211)
Q Consensus 107 ~a~~~~~~~ 115 (211)
++.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 997765543
No 12
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.87 E-value=9.2e-22 Score=135.09 Aligned_cols=81 Identities=38% Similarity=0.616 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|++|++.|||. .++|+.|+|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 45899999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=137.89 Aligned_cols=86 Identities=29% Similarity=0.558 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEE-EEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v-~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.+.++|||+|||+++++++|+++|++||.|..+ .|++++.++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ-YLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 457999999999999999999999999999999 99999999999999999999999999999999998 9999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
++.+....
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99766543
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=137.42 Aligned_cols=85 Identities=16% Similarity=0.383 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+ |++. .|+|+.|+|.+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~l~V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH-DIMGKKVEVKR 85 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC-BSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC-EECCeEEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999 8998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9766543
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=139.35 Aligned_cols=87 Identities=25% Similarity=0.428 Sum_probs=81.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 90 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF-GYDHLILNVE 90 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
++.+....
T Consensus 91 ~a~~~~~~ 98 (103)
T 2cq0_A 91 WAKPSTNS 98 (103)
T ss_dssp ESSCCCCS
T ss_pred ECCCCCCC
Confidence 99776543
No 16
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=137.53 Aligned_cols=85 Identities=28% Similarity=0.452 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 91 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM-TIKENIIKVA 91 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 3457999999999999999999999999999999999998 8999999999999999999999999997 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
++++...
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9976543
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-21 Score=138.84 Aligned_cols=86 Identities=40% Similarity=0.734 Sum_probs=81.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI-KLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC-BCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9876554
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=139.43 Aligned_cols=87 Identities=28% Similarity=0.463 Sum_probs=81.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.|+.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 88 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA-ELDGRELRVQ 88 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC-CBTTBCCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEE
Confidence 345799999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
+++.....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99766543
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.4e-21 Score=135.57 Aligned_cols=82 Identities=27% Similarity=0.476 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.++.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||. .|+|+.|+|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 91 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK-QLFGRVIKAS 91 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE-EETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEEE
Confidence 355799999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecC
Q 038096 107 LSG 109 (211)
Q Consensus 107 ~a~ 109 (211)
||+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=139.12 Aligned_cols=86 Identities=27% Similarity=0.401 Sum_probs=80.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcC------CCeeeCCe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFS------GIVTLYNR 101 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln------g~~~i~gr 101 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|++|+.++.++|||||+|.+.++|++||+.|| +. .|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~-~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL-KLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE-ESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc-EEcCE
Confidence 458999999999999999999999999999999999999999999999999999999999999999 87 99999
Q ss_pred EEEEEecCCCccC
Q 038096 102 TLRFALSGQDKNA 114 (211)
Q Consensus 102 ~l~v~~a~~~~~~ 114 (211)
.|+|.|+.+....
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999766543
No 21
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=1.7e-21 Score=141.56 Aligned_cols=86 Identities=24% Similarity=0.434 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+. .|+|+.|+|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 101 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF-QIGMKRLKVQL 101 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
++++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9766543
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=137.75 Aligned_cols=86 Identities=24% Similarity=0.401 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCC---CCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKE---TDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~---tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. |+.++|||||+|.+.++|++||+.|||. .|+|+.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH-TVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC-EETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC-eeCCeEEE
Confidence 4589999999999999999999999999999999999876 6799999999999999999999999998 99999999
Q ss_pred EEecCCCccC
Q 038096 105 FALSGQDKNA 114 (211)
Q Consensus 105 v~~a~~~~~~ 114 (211)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999766543
No 23
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=138.32 Aligned_cols=85 Identities=20% Similarity=0.400 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeE-EEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE---
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVV-DLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT--- 102 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~-~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~--- 102 (211)
+.+.++|||+|||+++++++|+++|++||.|. .|.|++++.++.++|||||+|.+.++|++|++.|||. .++|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK-PLPGATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS-EESSCSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC-ccCCCCcce
Confidence 45689999999999999999999999999999 9999999999999999999999999999999999998 999998
Q ss_pred -EEEEecCCCc
Q 038096 103 -LRFALSGQDK 112 (211)
Q Consensus 103 -l~v~~a~~~~ 112 (211)
|+|.||+...
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997654
No 24
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=134.69 Aligned_cols=84 Identities=20% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCC-CccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDK-PKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~-~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.+.++|||+|||.++++++|+++|++||.|..+.|+.+..++. ++|||||+|.+.++|++|++.|||. .++|+.|+|+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG-QIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC-eECCeEEEEE
Confidence 3478999999999999999999999999999999999987766 9999999999999999999999998 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
++.+.+
T Consensus 81 ~a~~~~ 86 (88)
T 4a8x_A 81 AVLAPW 86 (88)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.6e-21 Score=142.00 Aligned_cols=81 Identities=27% Similarity=0.525 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||||||+++++++|+++|++||.|.+|+|++|+ +.++|||||+|.+.++|++||+.|+|. .|+|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~-~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEECC
Confidence 5789999999999999999999999999999999986 458999999999999999999999998 9999999999987
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
....
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 26
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.4e-21 Score=137.90 Aligned_cols=87 Identities=17% Similarity=0.399 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccC-CCCCCCccEEEEEeCCHHHHHHHHHHc-CCCeeeCCeEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRD-KETDKPKGFAFVEYESEEIGHYAIKLF-SGIVTLYNRTLR 104 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d-~~tg~~rg~aFV~f~~~~~A~~Ai~~l-ng~~~i~gr~l~ 104 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.+ +.++.++|||||+|.+.++|++||+.| |+. .|+|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST-HLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC-BSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC-eECCCEEE
Confidence 345899999999999999999999999999999999999 788999999999999999999999999 898 99999999
Q ss_pred EEecCCCccC
Q 038096 105 FALSGQDKNA 114 (211)
Q Consensus 105 v~~a~~~~~~ 114 (211)
|.|+..+...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999876543
No 27
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.86 E-value=2.1e-21 Score=139.84 Aligned_cols=85 Identities=20% Similarity=0.355 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
+.+.++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEE
Confidence 355789999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
|+..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987654
No 28
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.9e-22 Score=140.49 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=72.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G--~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
.+|||||||+++++++|+++|++|| .|.++.|+.|+.+|+++|||||+|.+.++|++||+.|||. .++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~-~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS-CSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC-eeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999998 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 6543
No 29
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=135.29 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||. .|+|+.|+|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCC
Q 038096 108 SGQ 110 (211)
Q Consensus 108 a~~ 110 (211)
|+.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-21 Score=138.48 Aligned_cols=87 Identities=22% Similarity=0.499 Sum_probs=81.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+. .|+|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK-SVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC-CTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
+++.....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99766543
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.3e-21 Score=140.00 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..++++|||+|||+++++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|++.|||. .|+|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
||.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 986543
No 32
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=136.96 Aligned_cols=85 Identities=29% Similarity=0.447 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.++ +++++|||||+|.+.++|++||+.||+. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 90 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ-LLFDRPMHVKM 90 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC-EeCCCEEEEEE
Confidence 457999999999999999999999999999999999998 4999999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
++.....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 8765443
No 33
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=5e-21 Score=143.40 Aligned_cols=88 Identities=23% Similarity=0.408 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|+.||.|.+|.|++++.+++++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF-NILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE-ECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 355799999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCccCC
Q 038096 107 LSGQDKNAQ 115 (211)
Q Consensus 107 ~a~~~~~~~ 115 (211)
+++......
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998765543
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=139.58 Aligned_cols=84 Identities=23% Similarity=0.473 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK-SLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC-BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 457999999999999999999999999999999999998 8999999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
++....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 976544
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=2.6e-21 Score=138.41 Aligned_cols=86 Identities=20% Similarity=0.361 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee---CCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL---YNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i---~gr~l~ 104 (211)
.+.++|||+|||.++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.||+. .+ .|+.|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ-KTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC-cccCCCCceEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 66 889999
Q ss_pred EEecCCCccC
Q 038096 105 FALSGQDKNA 114 (211)
Q Consensus 105 v~~a~~~~~~ 114 (211)
|.++..+...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999876553
No 36
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.3e-21 Score=138.38 Aligned_cols=87 Identities=30% Similarity=0.419 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeE--------EEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVV--------DLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
..+.++|||+|||+++++++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|++||+.|||. .|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~ 90 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK-DF 90 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC-EE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC-cc
Confidence 34589999999999999999999999999999 6999999999999999999999999999999999998 99
Q ss_pred CCeEEEEEecCCCccC
Q 038096 99 YNRTLRFALSGQDKNA 114 (211)
Q Consensus 99 ~gr~l~v~~a~~~~~~ 114 (211)
+|+.|+|.+++.....
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999776543
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=137.33 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--------EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
....++|||+|||+++++++|+++|++||.|.. +.|+.++.+|+++|||||+|.+.++|++|++.|||. .+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~-~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC-BS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC-Ee
Confidence 355899999999999999999999999999999 999999999999999999999999999999999998 99
Q ss_pred CCeEEEEEecC
Q 038096 99 YNRTLRFALSG 109 (211)
Q Consensus 99 ~gr~l~v~~a~ 109 (211)
+|+.|+|++|+
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999974
No 38
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.85 E-value=7.7e-22 Score=140.23 Aligned_cols=80 Identities=29% Similarity=0.353 Sum_probs=77.3
Q ss_pred CCeEEEcCCCC------CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC-eE
Q 038096 30 GCNVYIGNLDE------KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN-RT 102 (211)
Q Consensus 30 ~~~lfVgnLp~------~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g-r~ 102 (211)
+++|||+|||. ++++++|+++|++||.|.+|.|++|+.||+++|||||+|.+.++|++||+.|||. .|+| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~-~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK-RLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-BSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc-ccCCCeE
Confidence 68999999999 9999999999999999999999999999999999999999999999999999998 9999 99
Q ss_pred EEEEecCC
Q 038096 103 LRFALSGQ 110 (211)
Q Consensus 103 l~v~~a~~ 110 (211)
|+|.+|.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 39
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.6e-21 Score=133.96 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~----~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
.+.++|||+|||+++++++|+ ++|++||.|.+|.|+.|+.+ +|||||+|.+.++|++||+.|||. .|+|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~-~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY-KIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE-EETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC-EECCeEE
Confidence 457899999999999999999 99999999999999999875 899999999999999999999998 9999999
Q ss_pred EEEecCCCc
Q 038096 104 RFALSGQDK 112 (211)
Q Consensus 104 ~v~~a~~~~ 112 (211)
+|++|++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999996654
No 40
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=147.66 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G--~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
+.++|||||||+++++++|+++|+.|| .|.+|.|+.|+.||+++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~-~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK-VLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC-EETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCeEeEEE
Confidence 468999999999999999999999999 9999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
+|.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98643
No 41
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.85 E-value=6.8e-21 Score=138.82 Aligned_cols=81 Identities=26% Similarity=0.478 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|++||+.|||. .|+|+.|+|+|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF-QVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC-EETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEe
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 42
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=1.8e-21 Score=144.69 Aligned_cols=86 Identities=24% Similarity=0.397 Sum_probs=81.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|++|+.+++++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~-~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM-ELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
|+.++++
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9977653
No 43
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.7e-21 Score=137.25 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCC-eEEEEEc-cCCCCCCCccEEEEEeCCHHHHHHHHHHcC--CCeeeCCeE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGR-VVDLYIP-RDKETDKPKGFAFVEYESEEIGHYAIKLFS--GIVTLYNRT 102 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~-i~~v~i~-~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln--g~~~i~gr~ 102 (211)
+.+.++|||+|||+++++++|+++|++||. |..|.|+ .++.+|.++|||||+|.+.++|++|++.|+ +. .++|+.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~-~~~g~~ 83 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI-QLWGHQ 83 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS-CBTTBC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc-eecCCe
Confidence 456899999999999999999999999998 9999998 898899999999999999999999999995 46 899999
Q ss_pred EEEEecCCCcc
Q 038096 103 LRFALSGQDKN 113 (211)
Q Consensus 103 l~v~~a~~~~~ 113 (211)
|+|.||.++..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999976654
No 44
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.85 E-value=6e-21 Score=132.06 Aligned_cols=81 Identities=22% Similarity=0.381 Sum_probs=77.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|++|+ .|||. .++|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~-~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES-LFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC-EETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC-EECCcEEEEEEcc
Confidence 689999999999999999999999999999999999999999999999999999999999 99998 9999999999987
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=7.6e-21 Score=131.20 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|++|++. ++. .|+|+.|.|++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~-~~~g~~i~v~~ 86 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEH-RLDGRVIDPKK 86 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCC-EECCEEEEEEe
Confidence 4589999999999999999999999999999999999999999999999999999999999975 776 89999999998
Q ss_pred c
Q 038096 108 S 108 (211)
Q Consensus 108 a 108 (211)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 46
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=9.3e-21 Score=134.97 Aligned_cols=84 Identities=27% Similarity=0.443 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++|| |..|.|++++.|++++|||||+|.+.++|++|| .|||. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~ 89 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA-LLGDRSLRVDI 89 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC-EETTEECEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC-eECCeEEEEEE
Confidence 4479999999999999999999999997 999999999999999999999999999999999 89998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9766543
No 47
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=7.5e-21 Score=135.74 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC---eEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN---RTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g---r~l~ 104 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||. .+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS-QTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC-CCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC-ccCCCCCccEE
Confidence 457999999999999999999999999999999999998 6999999999999999999999999998 7887 9999
Q ss_pred EEecCCCccC
Q 038096 105 FALSGQDKNA 114 (211)
Q Consensus 105 v~~a~~~~~~ 114 (211)
|.+|..+...
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876554
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=134.81 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCC-CCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~t-g~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.+.++|||+|||+++++++|+++|+.|| |..|.|+.++.+ ++++|||||+|.+.++|++|| .||+. .|+|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC-EeCCcEEEEE
Confidence 3479999999999999999999999999 999999999988 999999999999999999999 99998 9999999999
Q ss_pred ecCCCccCC
Q 038096 107 LSGQDKNAQ 115 (211)
Q Consensus 107 ~a~~~~~~~ 115 (211)
++.+.....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998765543
No 49
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.3e-21 Score=135.75 Aligned_cols=84 Identities=23% Similarity=0.383 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR-IVATKPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 45899999999999999999999999999999999998 7999999999999999999999999998 89999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9876554
No 50
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.9e-20 Score=134.48 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|++||+.+++ .|+|+.|+|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g~~l~V~~ 92 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDGRKANVNL 92 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCCEEEEEEE
Confidence 4579999999999999999999999999999999999999999999999999999999999999997 69999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97543
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=138.23 Aligned_cols=83 Identities=23% Similarity=0.469 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||..+++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|++|++.|||. .|+|+.|+|.+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF-ELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC-CSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8764
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=5.3e-21 Score=140.97 Aligned_cols=86 Identities=20% Similarity=0.321 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|||. .|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ-DLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEE
Confidence 455789999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
||.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9975544
No 53
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7e-21 Score=136.39 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCC--CeeeCCeEE
Q 038096 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG--IVTLYNRTL 103 (211)
Q Consensus 26 ~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng--~~~i~gr~l 103 (211)
...+.++|||+|||++++|++|+++|++||.|.+|.|+++ ||||||+|.+.++|++||+.|++ . .|+|++|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~-~l~Gr~l 84 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTP-VLRGQPI 84 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCC-EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCc-eECCEEE
Confidence 3456899999999999999999999999999999999875 59999999999999999998864 5 8999999
Q ss_pred EEEecCCCccC
Q 038096 104 RFALSGQDKNA 114 (211)
Q Consensus 104 ~v~~a~~~~~~ 114 (211)
+|.||+.+...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999765543
No 54
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.84 E-value=1.2e-20 Score=136.11 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||+.++ . .|+|+.|+|.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~-~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-E-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-C-cCCCEEEEEEE
Confidence 457999999999999999999999999999999999999999999999999999999999999874 5 89999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876543
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.7e-20 Score=132.43 Aligned_cols=84 Identities=15% Similarity=0.320 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++||+.||+. .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 89 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGR-KILGKEVKVNW 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCC-CcCCCeEEEEE
Confidence 4579999999999999999999999999999999999864 47899999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9875543
No 56
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=1.6e-20 Score=143.46 Aligned_cols=85 Identities=27% Similarity=0.503 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.||+. .|+|+.|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT-RLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
|.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976443
No 57
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=135.91 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++. .|+|+.|+|.+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~-~~~g~~l~V~~ 91 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH-TLDGRNIDPKP 91 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE-EETTEEEBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC-eECCEEEEEEE
Confidence 5589999999999999999999999999999999999999999999999999999999999999 997 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876554
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.84 E-value=1.7e-20 Score=134.31 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++||+.|||. .|+|+.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV-PLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEE
Confidence 3558999999999999999999999999999999999998 8999999999999999999999999998 9999999999
Q ss_pred ecC
Q 038096 107 LSG 109 (211)
Q Consensus 107 ~a~ 109 (211)
+|.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6.6e-21 Score=135.81 Aligned_cols=85 Identities=19% Similarity=0.379 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhc-CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCee-eCCeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQ-AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVT-LYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~-~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~-i~gr~l~v 105 (211)
.+.++|||+|||+++++++|+++|++ ||.|..|.|+.++ +|.++|||||+|.+.++|++||+.|||. . |+|+.|+|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA-VGLGSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC-CSSSSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC-cccCCEeEEE
Confidence 45799999999999999999999999 9999999999998 8999999999999999999999999998 8 99999999
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
.++.+....
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 998765543
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=132.16 Aligned_cols=81 Identities=37% Similarity=0.719 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++. +.++|||||+|.+.++|++|++.|||. .|+|+.|+|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI-RLYGRPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCC-EECCCEEEEEE
Confidence 4579999999999999999999999999999999999986 999999999999999999999999998 99999999999
Q ss_pred cCC
Q 038096 108 SGQ 110 (211)
Q Consensus 108 a~~ 110 (211)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 61
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.2e-20 Score=130.96 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|+.++. .++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 34579999999999999999999999999999999999874 48999999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9976544
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1.7e-20 Score=130.68 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..+.|.++ ++.++|||||+|.+.++|++|++.|||. .++|+.|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM-KLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC-CBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 45899999999999999999999999999999999884 6899999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 976654
No 63
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.6e-21 Score=137.30 Aligned_cols=83 Identities=27% Similarity=0.379 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|| .|||. .|+|+.|+|.++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ-RLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE-EETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC-EeCCeEEEEEec
Confidence 3689999999999999999999999999999999999999999999999999999999999 99998 999999999998
Q ss_pred CCCcc
Q 038096 109 GQDKN 113 (211)
Q Consensus 109 ~~~~~ 113 (211)
.+...
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 76543
No 64
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=4e-21 Score=128.96 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ +++. .++|+.|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~-~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH-EINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC-CSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC-EECCEEEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999998 8998 999999999885
No 65
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-21 Score=133.98 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|++|++.|||. .++|+.|++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKAS-GVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHH-TCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCC-eEeeEEEeecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999998 99999998877
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 66
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.7e-21 Score=135.67 Aligned_cols=84 Identities=33% Similarity=0.559 Sum_probs=79.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|..+.|+.++.+|.++|||||+|.+.++|++|++.|||. .++|+.|+|.++.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR-EFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB-SCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEEeCC
Confidence 689999999999999999999999999999999999989999999999999999999999999998 9999999999998
Q ss_pred CCccC
Q 038096 110 QDKNA 114 (211)
Q Consensus 110 ~~~~~ 114 (211)
.....
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.4e-21 Score=136.05 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++|||||||+++++++|+++|++||.|.+|.|++|+. |.++|||||+|.+.++|++||. +++. .++|+.|.|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~-~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ-KYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC-CCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC-EECCEEEEEEEc
Confidence 368999999999999999999999999999999999987 9999999999999999999999 8997 999999999987
Q ss_pred CC
Q 038096 109 GQ 110 (211)
Q Consensus 109 ~~ 110 (211)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 68
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=2.4e-20 Score=142.55 Aligned_cols=85 Identities=28% Similarity=0.492 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||+++++++|+++|++||.|..|.|+.|+.+|.++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 146 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQM 146 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE-ESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 44789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+++...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 977654
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.2e-20 Score=130.58 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. +. .|+|+.|.|.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~l~v~~ 89 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDGRWCDCKL 89 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETTEEEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCCeEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999994 65 89999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976544
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-21 Score=135.51 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCC-CCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDK-ETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~-~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...++|||+|||+++++++|+++|++|| |.+|.|+.++ .+|+++|||||+|.+.++|++|| .|||. .|+|+.|+|.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~-~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE-SLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC-CBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC-EECCeEEEEE
Confidence 4579999999999999999999999999 9999999998 68999999999999999999999 89998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
++++.
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 71
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=135.63 Aligned_cols=84 Identities=18% Similarity=0.266 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHH---HHHhcCCCeEEEEEccCCCCC---CCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe
Q 038096 28 NSGCNVYIGNLDEKVNERVLY---DILIQAGRVVDLYIPRDKETD---KPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR 101 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~---~~F~~~G~i~~v~i~~d~~tg---~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr 101 (211)
.+.++|||+|||+++++++|+ ++|++||.|.+|.|+.++.++ .++|||||+|.+.++|++||+.|||. .|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~-~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV-VVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE-EETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC-EECCE
Confidence 447899999999999999999 999999999999999998754 55699999999999999999999998 99999
Q ss_pred EEEEEecCCCc
Q 038096 102 TLRFALSGQDK 112 (211)
Q Consensus 102 ~l~v~~a~~~~ 112 (211)
.|+|.||.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999997665
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-21 Score=134.14 Aligned_cols=83 Identities=16% Similarity=0.171 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
+..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC-eeCCeEEEEEE
Confidence 34688999999999999999999999999998888888889999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 73
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.83 E-value=6.7e-20 Score=134.82 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..+++|||+|||+++++++|+++|++||.|..|.|+.++ +|+++|||||+|.+.++|++|++.|||. .|+|+.|+|++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 110 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQL 110 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE-ESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEEE
Confidence 457899999999999999999999999999999999998 8999999999999999999999999998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
|....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 86643
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=135.11 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+. ++. .|+|+.|+|.++.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPH-SIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSE-EETTEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCc-EECCEEEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999998 887 9999999999997
Q ss_pred CCccC
Q 038096 110 QDKNA 114 (211)
Q Consensus 110 ~~~~~ 114 (211)
+....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 75
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.9e-20 Score=131.41 Aligned_cols=83 Identities=23% Similarity=0.417 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|++||+.||+. .|+|+.|+|+|
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 95 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGY-DYDGYRLRVEF 95 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 45799999999999999999999999999999999764 568999999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
++.....
T Consensus 96 a~~~~~~ 102 (109)
T 1x4a_A 96 PRSGRGT 102 (109)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9776543
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.83 E-value=3.3e-20 Score=136.32 Aligned_cols=82 Identities=22% Similarity=0.354 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|++|| .|||. .|+|+.|+|.+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~-~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET-VFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC-EETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 689999999999999999999999999999999999999999999999999999999999 79998 9999999999997
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=127.76 Aligned_cols=81 Identities=19% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||+++++++|+++|+.| .|..|.|+++ .+|+++|||||+|.+.++|++||+ |||. .|+|+.|.|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~-~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE-YMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE-EETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc-eeCCcEEEEEE
Confidence 447999999999999999999999999 9999999999 779999999999999999999999 9998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+.+..
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87653
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.83 E-value=7.6e-21 Score=133.22 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
+..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++||+.||+. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR-PIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEe
Confidence 34689999999999999999999999999999999999899999999999999999999999999998 99999999998
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 79
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=137.85 Aligned_cols=81 Identities=38% Similarity=0.626 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||.++++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++.|||. .|+|+.|+|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-ELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE-EETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 345899999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ec
Q 038096 107 LS 108 (211)
Q Consensus 107 ~a 108 (211)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 80
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-21 Score=128.53 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.++ . .++|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 6 899999999987
No 81
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=140.32 Aligned_cols=85 Identities=16% Similarity=0.328 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC---eeeCCeE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVD--LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI---VTLYNRT 102 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~--v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~---~~i~gr~ 102 (211)
...++|||+|||+++++++|+++|++||.|.. |+|++|+.||+++|||||+|.+. +|++||+.|||. +.|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999999999999999999999 999999999994 3699999
Q ss_pred EEEEecCCCcc
Q 038096 103 LRFALSGQDKN 113 (211)
Q Consensus 103 l~v~~a~~~~~ 113 (211)
|+|+++++...
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999977544
No 82
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.8e-20 Score=133.41 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||.++++++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|++|++.|||. .|+|+.|+|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT-VVEGRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEE
Confidence 3458999999999999999999999999999999999986 458999999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
+++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98654
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=132.30 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCC------cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe-
Q 038096 29 SGCNVYIGNLDEKV------NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR- 101 (211)
Q Consensus 29 ~~~~lfVgnLp~~~------~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr- 101 (211)
..++|||||||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|++||+.|||. .|+|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~-~~~g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE-ECSTTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc-ccCCCc
Confidence 37899999999999 789999999999999999998 467999999999999999999999999998 99998
Q ss_pred EEEEEecCCC
Q 038096 102 TLRFALSGQD 111 (211)
Q Consensus 102 ~l~v~~a~~~ 111 (211)
.|+|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998643
No 84
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.82 E-value=3.3e-21 Score=133.88 Aligned_cols=80 Identities=33% Similarity=0.520 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
++|||+|||.++++++|+++|++||.|.++.|++++.+|.++|||||+|.+.+ |++|+..|||. .++|+.|+|++|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~-~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT-DFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS-CCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC-EECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999998 99999999999866
Q ss_pred Cc
Q 038096 111 DK 112 (211)
Q Consensus 111 ~~ 112 (211)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 85
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-20 Score=132.16 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEEE
Q 038096 28 NSGCNVYIGNLDE-KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~-~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~v 105 (211)
.++++|||+|||+ ++++++|+++|++||.|.+|.|+++ +|||||+|.+.++|++||+.||+. ..|+|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4589999999999 9999999999999999999999875 389999999999999999998864 2699999999
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
.+|+..+..
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999765543
No 86
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.5e-20 Score=132.48 Aligned_cols=82 Identities=29% Similarity=0.421 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee--------C
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL--------Y 99 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i--------~ 99 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||. .| .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~-~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK-FIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC-CCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC-EEcCCccccCC
Confidence 457999999999999999999999999999999999998 8999999999999999999999999998 78 5
Q ss_pred CeEEEEEecCCC
Q 038096 100 NRTLRFALSGQD 111 (211)
Q Consensus 100 gr~l~v~~a~~~ 111 (211)
++.|.|.||.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998743
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=134.80 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCe-EEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRV-VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i-~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
.+.++|||+|||+++++++|+++|+.||.| ..|.|++|+ +|+++|||||+|.+.++|++||+. |+. .|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~-~~~gr~i~v~ 89 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRK-KLNGREAFVH 89 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSE-EETTEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCC-ccCCeEEEEE
Confidence 457899999999999999999999999999 889999998 899999999999999999999998 997 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987554
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.6e-20 Score=140.55 Aligned_cols=86 Identities=28% Similarity=0.488 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||. .|+|+.|+|.|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~-~i~g~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA-VLDGRELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 34789999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+++....
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9776543
No 89
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=7e-20 Score=141.34 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..++++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++||+.|||. .|+|+.|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA-EIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC-EECCEEEEEE
Confidence 345788999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
|+.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876544
No 90
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=128.14 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.| .++.+ .+++++|||||+|.+.++|++||+.||+. .|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 86 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKR-EIEGRAIRLE 86 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCC-EeCCeEEEEE
Confidence 3458999999999999999999999999977 56666 57999999999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
++++...
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9977644
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.1e-19 Score=125.41 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
-+..||||||++.++|++|+++|.+||+|.++.+.. +||||||+|.+.++|++|++.||+. .++|++|+|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~-~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNC-VLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTE-EETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCC-EECCcEEEEEEC
Confidence 367899999999999999999999999999999864 6799999999999999999999998 999999999998
Q ss_pred C
Q 038096 109 G 109 (211)
Q Consensus 109 ~ 109 (211)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 92
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=2.9e-20 Score=151.04 Aligned_cols=82 Identities=20% Similarity=0.287 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCC--CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAG--RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G--~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..++|||+||++++++++|+++|++|| .|++|.|++|+.|+++||||||+|.+.++|++||+.||+. .|+|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~-~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR-ELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS-CBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-eECCEEeEEE
Confidence 468899999999999999999999999 9999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
+|...
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98643
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=128.20 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc--CCCeeeCCeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF--SGIVTLYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l--ng~~~i~gr~l~v 105 (211)
.++++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.| ++. .+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~-~~~Gr~l~V 85 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTP-HLRNQPIYI 85 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCC-EETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCc-eECCcEEEE
Confidence 45799999999999999999999999999999999875 699999999999999999977 455 899999999
Q ss_pred EecCCCccC
Q 038096 106 ALSGQDKNA 114 (211)
Q Consensus 106 ~~a~~~~~~ 114 (211)
.||+.+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999765443
No 94
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-20 Score=135.77 Aligned_cols=82 Identities=24% Similarity=0.451 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCe----EEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRV----VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i----~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
.+.++|||+|||+++++++|+++|++||.| ..+.+. +++++|||||+|.+.++|++||+.|||. .|+|+.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGY-KLYGKIL 97 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTC-BCSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEE
Confidence 457999999999999999999999999998 455544 6899999999999999999999999998 9999999
Q ss_pred EEEecCCCccC
Q 038096 104 RFALSGQDKNA 114 (211)
Q Consensus 104 ~v~~a~~~~~~ 114 (211)
+|.|+......
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999876554
No 95
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=128.48 Aligned_cols=79 Identities=19% Similarity=0.118 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLRF 105 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~v 105 (211)
.+++++|||+|||+++++++|+++|++||.|.++.+++ .||||||+|.+.++|.+|++.|++. +.+.|++|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35689999999999999999999999999999999975 3599999999999999999999886 2489999999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
++|+.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 96
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=129.90 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVD-LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~-v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...++|||+|||+++++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|++||+. ++. .|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~-~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKE-RIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTC-CSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccc-hhCCcEEEEE
Confidence 44799999999999999999999999999988 889998 7899999999999999999999998 898 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98654
No 97
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=126.55 Aligned_cols=81 Identities=20% Similarity=0.345 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC--CeEE
Q 038096 26 NSNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY--NRTL 103 (211)
Q Consensus 26 ~s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~--gr~l 103 (211)
...+.++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++.||+. .|+ |+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~-~~~~~g~~l 85 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF-PLGGPDRRL 85 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC-BCSSSSCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC-EeCCCCcEE
Confidence 3456799999999999999999999999999999999764 689999999999999999999998 899 9999
Q ss_pred EEEecCCCcc
Q 038096 104 RFALSGQDKN 113 (211)
Q Consensus 104 ~v~~a~~~~~ 113 (211)
+|.|++++..
T Consensus 86 ~V~~a~~~~~ 95 (97)
T 1why_A 86 RVDFAKSGPS 95 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999977543
No 98
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-20 Score=138.32 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|++||+ |||. .|+|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ-YMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB-CSTTSCBEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEEE
Confidence 457999999999999999999999999999887677777789999999999999999999999 9998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
+..+
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 99
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=9.9e-20 Score=131.90 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...++|||+|||+++++++|+++|++|| .|..+.|.. +.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~-~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNI-EFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTE-EETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEE
Confidence 3478999999999999999999999999 899999864 357899999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-19 Score=128.57 Aligned_cols=80 Identities=19% Similarity=0.450 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
....++|||+|||.++++++|+++|++||.|..|.|+.+ +|||||+|.+.++|++||+.|+|. .|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT-TIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC-EECCcEEEEE
Confidence 355899999999999999999999999999999999876 699999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
|+++...
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9977654
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.4e-20 Score=133.70 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~v~ 106 (211)
.++++|||+|||++++|++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.+++. ..|+|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45799999999999999999999999999999999875 699999999999999999988741 27999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
+|+.+...
T Consensus 103 ~a~~k~~~ 110 (119)
T 2ad9_A 103 FSNHKELK 110 (119)
T ss_dssp ECSSSSCC
T ss_pred EccCCCCC
Confidence 99765543
No 102
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=128.00 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC-----eEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN-----RTL 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g-----r~l 103 (211)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||. .|+| +.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~~~~~~i 85 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYI 85 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE-EEECTTSCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC-CccCCcCcceEE
Confidence 4789999999999999999999999999999999886 89999999999999999999998 9999 999
Q ss_pred EEEecCCCccC
Q 038096 104 RFALSGQDKNA 114 (211)
Q Consensus 104 ~v~~a~~~~~~ 114 (211)
+|.+|.+....
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999875543
No 103
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.81 E-value=2.4e-20 Score=125.10 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++. ++. .++|+.|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~-~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH-NVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC-CBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC-eECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999996 776 899999999875
No 104
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=134.70 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~----~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
.+.++||||||++.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|++|++.|||. .|.|+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~-~l~gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY-PFQGNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC-CCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC-EeCCCEE
Confidence 457899999999999999876 6999999999998864 5889999999999999999999999998 9999999
Q ss_pred EEEecCCCcc
Q 038096 104 RFALSGQDKN 113 (211)
Q Consensus 104 ~v~~a~~~~~ 113 (211)
+|.||+.+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999976543
No 105
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=126.54 Aligned_cols=73 Identities=26% Similarity=0.431 Sum_probs=67.9
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe-E
Q 038096 30 GCNVYIGNLDEKV------NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR-T 102 (211)
Q Consensus 30 ~~~lfVgnLp~~~------~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr-~ 102 (211)
+++|||+|||..+ ++++|+++|++||.|.++.|+ +.+|+++|||||+|.+.++|++|++.|||. .++|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY-KLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC-CCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc-ccCCcee
Confidence 4789999999999 789999999999999999988 467999999999999999999999999998 99999 8
Q ss_pred EEE
Q 038096 103 LRF 105 (211)
Q Consensus 103 l~v 105 (211)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 876
No 106
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=127.52 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG-EIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 35589999999999999999999999874 6788888888999999999999999999999999998 9999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876553
No 107
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=7.5e-20 Score=133.78 Aligned_cols=81 Identities=22% Similarity=0.196 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCC---eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~---i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
.+.++|||+|||+++++++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|++||+ +|+. .|+|+.|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~-~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRE-SMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTE-EETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-eECCeEEE
Confidence 34789999999999999999999999999 89999999987 9999999999999999999999 8998 99999999
Q ss_pred EEecCCC
Q 038096 105 FALSGQD 111 (211)
Q Consensus 105 v~~a~~~ 111 (211)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998644
No 108
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.80 E-value=9.1e-21 Score=134.45 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|++||+ |||. .|+|+.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC-CBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc-EECCcEEEEEE
Confidence 35789999999999999999999999999988 777888889999999999999999999999 9998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976544
No 109
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=123.74 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.||+. .++|+.|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY-KLHGVNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC-BCSSCBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC-ccCCcEEEEEE
Confidence 457999999999999999999999999999999987 589999999999999999999998 99999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+......
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9776543
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8e-20 Score=130.36 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||+++++++|+++|+.||. ++|.|++|+ +++++|||||+|.+.++|++||+ +|+. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA-NMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC-eECCcEEEEEE
Confidence 45789999999999999999999999995 499999998 89999999999999999999995 6998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86544
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=128.19 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~v~ 106 (211)
.++++|||+|||+++++++|+++|++||.|.+|.|+++ ||||||+|.+.++|++|++.|++. +.|+|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45799999999999999999999999999999998764 699999999999999999988654 25999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
|++.+...
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99765543
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-19 Score=128.20 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
....++|||+|||.++++++|+++|++||.|.++.|. +++|||||+|.+.++|++|++.|||. .++|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANF-PFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-EETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 4457999999999999999999999999999999986 45799999999999999999999998 9999999999
Q ss_pred ecCC
Q 038096 107 LSGQ 110 (211)
Q Consensus 107 ~a~~ 110 (211)
|+++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9865
No 113
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=8.3e-20 Score=136.91 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCC---eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~---i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
.+.++|||+|||+++++++|+++|+.||. |..|.|++|+. |+++|||||+|.+.++|++||+ +|+. .|+|+.|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~-~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRE-SMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEE-ESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCC-EECCEEEE
Confidence 45789999999999999999999999999 88999999988 9999999999999999999999 9998 99999999
Q ss_pred EEecCC
Q 038096 105 FALSGQ 110 (211)
Q Consensus 105 v~~a~~ 110 (211)
|.++..
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999854
No 114
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=3.4e-19 Score=142.65 Aligned_cols=84 Identities=23% Similarity=0.424 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||||||++++|++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++||+.+++. .+.|+.|++.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~-~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD-VIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhh-hcCCccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 86543
No 115
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=126.93 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|++|++.|||. .|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGL-RLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTC-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 4478999999999999999999999999996 66664 478899999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
++++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 977543
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=1.6e-19 Score=126.91 Aligned_cols=82 Identities=26% Similarity=0.534 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~----~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
.++++|||+|||+++++++|+ ++|++||.|..|.+.. +|.++|||||+|.+.++|++|++.|||. .++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC-EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC-EECCcEE
Confidence 458999999999999999999 9999999999999874 4788999999999999999999999998 9999999
Q ss_pred EEEecCCCcc
Q 038096 104 RFALSGQDKN 113 (211)
Q Consensus 104 ~v~~a~~~~~ 113 (211)
+|.|+.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999977543
No 117
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=7.8e-19 Score=123.95 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 27 SNSGCNVYIGNLDE-KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 27 s~~~~~lfVgnLp~-~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.+++++|||+|||+ ++++++|+++|++||.|..+.|. +|||||+|.+.++|++|++.|||. .++|+.|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V 89 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE-MNFGKKLIL 89 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS-EETTEECEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-EECCEEEEE
Confidence 35689999999998 99999999999999999999983 699999999999999999999998 999999999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
++++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998654
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=121.26 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++|++.|||. .|+|+.|+|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNT-EFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-eeCCcEEEEE
Confidence 34579999999999999999999999999999999974 59999999999999999999998 9999999999
Q ss_pred ecCCCccC
Q 038096 107 LSGQDKNA 114 (211)
Q Consensus 107 ~a~~~~~~ 114 (211)
++.+....
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99766543
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=5.2e-19 Score=127.37 Aligned_cols=77 Identities=27% Similarity=0.369 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||. .++|+.|.|.+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK-SFANQPLEVVY 99 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 458999999999999999999999999999999987 599999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
++....
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 977644
No 120
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=127.93 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|+.| .|.+|.|+.|+. |+++|||||+|.+.++|++|| .+|+. .|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~-~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRM-LMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTE-EETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCC-eECCeEEEEEECC
Confidence 5799999999999999999999999 899999999986 999999999999999999999 68998 9999999998875
Q ss_pred C
Q 038096 110 Q 110 (211)
Q Consensus 110 ~ 110 (211)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=7e-21 Score=138.52 Aligned_cols=87 Identities=21% Similarity=0.346 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEE--------EEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVD--------LYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY 99 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~ 99 (211)
.+.++|||+|||+++++++|+++|++||.|.. |.|+.++.++.++|||||+|.+.++|++||+.|||. .|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK-EFS 83 (116)
Confidence 45789999999999999999999999999998 999999999999999999999999999999999998 999
Q ss_pred CeEEEEEecCCCccCC
Q 038096 100 NRTLRFALSGQDKNAQ 115 (211)
Q Consensus 100 gr~l~v~~a~~~~~~~ 115 (211)
|+.|+|.++.++....
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999997765543
No 122
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.9e-18 Score=122.98 Aligned_cols=79 Identities=16% Similarity=0.300 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|+ +|||||+|.+.++|++||+.||+. .|+|+.|+|.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK-DLEGENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC-ccCCCEEEEEE
Confidence 347899999999999999999999999999999986 369999999999999999999998 99999999999
Q ss_pred cCCCccCC
Q 038096 108 SGQDKNAQ 115 (211)
Q Consensus 108 a~~~~~~~ 115 (211)
+.+.....
T Consensus 80 a~~~~~~~ 87 (103)
T 2dgu_A 80 AKPPDQKR 87 (103)
T ss_dssp CCCCCCCC
T ss_pred cCCCcccc
Confidence 97765543
No 123
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=8.1e-20 Score=131.20 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCC---eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGR---VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~---i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
.+.++|||+|||+++++++|+++|+.||. |..|.|++|+. |+++|||||+|.+.++|++||+ +++. .|+|+.|+
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~gr~i~ 85 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM-YMGQRYVE 85 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC-CSSSSCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc-eeCCeEEE
Confidence 45799999999999999999999999998 89999999988 9999999999999999999999 8998 89999999
Q ss_pred EEecCCC
Q 038096 105 FALSGQD 111 (211)
Q Consensus 105 v~~a~~~ 111 (211)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998653
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=5.8e-19 Score=127.94 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..+++|||+|||+++++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|++|++.|||. .++|+.|.|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF-NVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC-BSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 44799999999999999999999999999999999876 456999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 82 a~~~~~ 87 (115)
T 3lqv_A 82 YNANRA 87 (115)
T ss_dssp CCHHHH
T ss_pred ecCChh
Confidence 975443
No 125
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=120.43 Aligned_cols=75 Identities=16% Similarity=0.328 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc-CCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF-SGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l-ng~~~i~gr~l~v~ 106 (211)
...++|||+|||.++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.| +|. .++|+.|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~-~~~g~~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL-IVNGRRLNVK 82 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC-EETTEECCEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe-eECCCEEEEE
Confidence 45789999999999999999999999999999999864 699999999999999999988 887 9999999999
Q ss_pred ecC
Q 038096 107 LSG 109 (211)
Q Consensus 107 ~a~ 109 (211)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 126
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=120.89 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|++||.|..|.|++ +||||+|.+.++|++|++.|||. .++|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGK-EVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCC-EECCcEEEEE
Confidence 34589999999999999999999999999999999974 59999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
++.+...
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9976644
No 127
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=126.07 Aligned_cols=78 Identities=28% Similarity=0.453 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
++|||+|||+++++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|++.|||. .++|+.|+|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK-VICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS-CSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC-eECCcEEEEEEccC
Confidence 58999999999999999999999999999999886 6899999999999999999999998 99999999999977
Q ss_pred CccC
Q 038096 111 DKNA 114 (211)
Q Consensus 111 ~~~~ 114 (211)
....
T Consensus 75 ~~~~ 78 (101)
T 2hvz_A 75 MPRR 78 (101)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6543
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=129.34 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEE
Q 038096 27 SNSGCNVYIGNLDEK-VNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLR 104 (211)
Q Consensus 27 s~~~~~lfVgnLp~~-~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~ 104 (211)
..++++|||+|||++ +++++|+++|++||.|.+|.|++ +||||||+|.+.++|++||+.|++. ..|+|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 455899999999998 99999999999999999999964 4699999999999999999988642 269999999
Q ss_pred EEecCCCccC
Q 038096 105 FALSGQDKNA 114 (211)
Q Consensus 105 v~~a~~~~~~ 114 (211)
|.+|......
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999766544
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=124.79 Aligned_cols=80 Identities=20% Similarity=0.465 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..|.|.++ +|||||+|.+.++|++|++.|||. .|+|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM-PLRGKQLRVRF 85 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC-CBTTBCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC-EeCCceEEEEE
Confidence 45789999999999999999999999999999999764 699999999999999999999998 89999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.+....
T Consensus 86 a~~~~~~ 92 (99)
T 2cpj_A 86 ACHSASL 92 (99)
T ss_dssp SSCCSCC
T ss_pred cCCCCCC
Confidence 9776543
No 130
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.78 E-value=2.1e-19 Score=127.58 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||+|||+++++++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|++|++ ++. .++|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~-~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQI-NFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCC-EETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCC-eECCEEEEEEEC
Confidence 36899999999999999999999999999999999998 89999999999999999999999 887 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 6543
No 131
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=125.57 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.|+|. .|+|+.|+|.+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 87 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYY 87 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEE-EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEE
Confidence 347999999999999999999999999988766 346899999999999999999999999997 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 976543
No 132
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.5e-18 Score=132.23 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
+++|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|++|++.|+|. .++|+.|.|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL-RLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCC-ccCCceEEEEecC
Confidence 689999999999999999999999999999999999989999999999999999999999999998 9999999999987
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
+..
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 554
No 133
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.78 E-value=1.1e-18 Score=133.44 Aligned_cols=83 Identities=30% Similarity=0.482 Sum_probs=78.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
++++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|+|. .++|+.|.|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI-TVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCC-EeCCcEEEEEec
Confidence 3789999999999999999999999999999999999989999999999999999999999999998 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
.+..
T Consensus 81 ~~~~ 84 (168)
T 1b7f_A 81 RPGG 84 (168)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7654
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=1.6e-18 Score=124.79 Aligned_cols=76 Identities=32% Similarity=0.482 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEK-VNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~-~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..++|||+|||++ +++++|+++|++||.|..|.| ++|||||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~ 96 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGR-VLAGQTLDINM 96 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC-EETTEECCEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 4689999999999 999999999999999999988 4699999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+...+.
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 975544
No 135
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=5e-19 Score=138.29 Aligned_cols=83 Identities=20% Similarity=0.360 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..+++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|++||+.|||. .|+|+.|+|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~-~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV-PLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC-BCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEE
Confidence 447899999999999999999999999999999999998 8999999999999999999999999998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
|....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 86543
No 136
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=122.53 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCC-eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCC-CeeeCCeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGR-VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSG-IVTLYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~-i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng-~~~i~gr~l~v 105 (211)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| . .|+|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKV-ELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTC-EETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCe-eECCEEEEE
Confidence 45789999999999999999999999999 5555552 469999999999999999999999 7 999999999
Q ss_pred EecCCCcc
Q 038096 106 ALSGQDKN 113 (211)
Q Consensus 106 ~~a~~~~~ 113 (211)
.|+.++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99976644
No 137
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.8e-18 Score=131.66 Aligned_cols=81 Identities=21% Similarity=0.416 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||. .++|+.|+|.|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~ 163 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ-DLNGRPLRINW 163 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCC-ccCCcEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cC
Q 038096 108 SG 109 (211)
Q Consensus 108 a~ 109 (211)
|+
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 138
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=119.84 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcC--CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQA--GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~--G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.+.++|||+|||+++++++|+++|++| |.|..|.+. +|||||+|.+.++|++||+.|||. .|+|+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v 83 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK-VLDGSPIEV 83 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE-EETTEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC-EeCCcEEEE
Confidence 447899999999999999999999999 999999875 489999999999999999999998 999999999
Q ss_pred EecCCCcc
Q 038096 106 ALSGQDKN 113 (211)
Q Consensus 106 ~~a~~~~~ 113 (211)
.++++...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99977654
No 139
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.8e-19 Score=129.40 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=72.3
Q ss_pred CeEEEcCC----CCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCC----HHH----HHHHHH--HcCCCe
Q 038096 31 CNVYIGNL----DEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES----EEI----GHYAIK--LFSGIV 96 (211)
Q Consensus 31 ~~lfVgnL----p~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~----~~~----A~~Ai~--~lng~~ 96 (211)
++|||||| ++.+++++|+++|++||+|.+|.++.|+.||.++|||||+|.+ .++ |.+|+. .+||.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~- 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC- 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC-
Confidence 68999999 9999999999999999999999999999999999999999996 322 888988 78998
Q ss_pred eeCCeEEEEEecCCC
Q 038096 97 TLYNRTLRFALSGQD 111 (211)
Q Consensus 97 ~i~gr~l~v~~a~~~ 111 (211)
.|+|++|+|.+.+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986543
No 140
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.3e-18 Score=132.06 Aligned_cols=79 Identities=33% Similarity=0.545 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++||+.|||. .|+|+.|+|.|
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 144 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR-TLCGCRVRVEL 144 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS-CSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC-EECCeEEEEEE
Confidence 45799999999999999999999999999999999876 5799999999999999999999998 89999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+.+.+
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97653
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-18 Score=118.78 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|++||+.|||. .|+|+.|+|.|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVNI 83 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTE-EETTEEEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEEE
Confidence 45799999996 89999999999999999999984 56799999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976544
No 142
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=123.72 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=70.6
Q ss_pred CCCCCCeEEE--cCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee-----
Q 038096 26 NSNSGCNVYI--GNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL----- 98 (211)
Q Consensus 26 ~s~~~~~lfV--gnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i----- 98 (211)
...++++||| |||++++++++|+++|++||.|.+|.|+.+ ||||||+|.+.++|++|++.|||. .+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGK-EVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTC-EEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCC-EEccccC
Confidence 3456889999 889999999999999999999999988653 699999999999999999999998 77
Q ss_pred CCeEEEEEecCCC
Q 038096 99 YNRTLRFALSGQD 111 (211)
Q Consensus 99 ~gr~l~v~~a~~~ 111 (211)
.|+.|.|.++..-
T Consensus 94 ~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKITLYLNFVEKV 106 (114)
T ss_dssp CEEECEEEEESCC
T ss_pred CCcEEEEEecccC
Confidence 6889999998643
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5e-19 Score=130.47 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCe----EEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRV----VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i----~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
.+.++|||+|||+++++++|+++|++||.| ..|.|++|. +|+++|||||+|.+.++|++||+. |+. .|+|+.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD-LLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCCeEE
Confidence 347999999999999999999999999986 689999985 799999999999999999999997 887 9999999
Q ss_pred EEEecCC
Q 038096 104 RFALSGQ 110 (211)
Q Consensus 104 ~v~~a~~ 110 (211)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 144
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=1.6e-18 Score=119.99 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||+|||+++++++|+++|++| .|.++.|. +++|||||+|.+.++|++|++.|||. .++|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY-SFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE-EETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC-eECCcEEEEEEc
Confidence 47899999999999999999999999 99999884 57899999999999999999999998 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6544
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=119.93 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ |||. .|+|+.|.|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~-~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH-SLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC-EETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe-EECCEEEEEEEC
Confidence 36899999999999999999999999999987 55666565 99999999999999999 9998 999999999988
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 146
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=7.9e-19 Score=123.46 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 27 SNSGCNVYIGNLDE-KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 27 s~~~~~lfVgnLp~-~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.++.++|||+|||+ ++++++|+++|++||.|..|.|. +|||||+|.+.++|++|++.|||. .++|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQE-MNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS-SCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC-eeCCcEEEE
Confidence 35689999999998 99999999999999999999984 599999999999999999999998 899999999
Q ss_pred EecCCCcc
Q 038096 106 ALSGQDKN 113 (211)
Q Consensus 106 ~~a~~~~~ 113 (211)
.++.....
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99876543
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=2.3e-19 Score=135.01 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||++++|++|+++|++|| |++|.|++|+. |+++|||||+|.+.++|++|| .+|+. .|+|+.|+|.+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~-~l~gR~i~V~~ 119 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA-NMQHRYIELFL 119 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC-SSSSCCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC-EECCEEEEEEE
Confidence 4578999999999999999999999999 77999999987 999999999999999999999 78998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86543
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.76 E-value=2.2e-19 Score=135.19 Aligned_cols=85 Identities=22% Similarity=0.337 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEE--EEccC---CCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDL--YIPRD---KETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT 102 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v--~i~~d---~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~ 102 (211)
.+.++|||+|||+++++++|+++|++||.|..+ .++.| ..+|.++|||||+|.+.++|++||+.|||. .|+|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY-VLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB-EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC-EeCCcE
Confidence 457999999999999999999999999998764 11111 246899999999999999999999999998 999999
Q ss_pred EEEEecCCCcc
Q 038096 103 LRFALSGQDKN 113 (211)
Q Consensus 103 l~v~~a~~~~~ 113 (211)
|.|.+|+....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976544
No 149
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=9.3e-19 Score=129.47 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeE--EEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVV--DLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~--~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
.+.++|||+|||+++++++|+++|+.| .|+ .|.|++|+. |+++|||||+|.+.++|++||+. ++. .|+|+.|.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~-~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKE-RIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTC-CBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCC-EECCEEEEE
Confidence 457899999999999999999999999 576 899999988 99999999999999999999986 666 899999999
Q ss_pred EecCC
Q 038096 106 ALSGQ 110 (211)
Q Consensus 106 ~~a~~ 110 (211)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 150
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=2.6e-18 Score=151.62 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+.++|||+|||+.+++++|+++|++||.|+.|.|+.++.||.++|||||+|.+.++|++||+.|||. .|+|+.|.|.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK-KIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC-EECCEEEEEEEe
Confidence 3589999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 151
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=121.22 Aligned_cols=78 Identities=27% Similarity=0.306 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEE-EEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDL-YIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v-~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..++|||+|||+++++++|+++|++||.|..| .|+.++.++. |||+|.+.++|++||+.|||. .|+|+.|+|.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~-~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGF-QLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTC-BCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCC-EECCcEEEEEE
Confidence 47899999999999999999999999999999 5888876543 999999999999999999998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 152
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=124.33 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCC---CCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKET---DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~t---g~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~---~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL---EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE---EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh---hcCCcEEE
Confidence 3479999999999999999999999999999 999998887 7999999999999999999999984 58888888
Q ss_pred EEecCC
Q 038096 105 FALSGQ 110 (211)
Q Consensus 105 v~~a~~ 110 (211)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 876543
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=125.08 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|..|.|+. ++|||||+|.+.++|++||+.|||. .|+|+.|+|.||.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~-~~~g~~l~V~~a~ 82 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS-KFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC-BSSSSBCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC-EECCeEEEEEECC
Confidence 68999999999999999999999999999999864 5689999999999999999999998 9999999999986
Q ss_pred CC
Q 038096 110 QD 111 (211)
Q Consensus 110 ~~ 111 (211)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 154
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=3.3e-18 Score=131.32 Aligned_cols=80 Identities=24% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||. .++|+.|.|+||
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC-EETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC-EECCeEEEEEeC
Confidence 3689999999999999999999999999999999999989999999999999999999999999998 999999999997
Q ss_pred C
Q 038096 109 G 109 (211)
Q Consensus 109 ~ 109 (211)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 155
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.75 E-value=4.6e-18 Score=133.38 Aligned_cols=85 Identities=24% Similarity=0.412 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|++|++.|||. .|+|+.|+|.+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM-QLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC-EECCEEEEEEE
Confidence 45799999999999999999999999999999999999989999999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 976543
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=4.4e-18 Score=133.28 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|++||+. ++. .++|+.|.|.+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~-~~~g~~l~v~~ 88 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPH-KVDGRVVEPKR 88 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCC-EECCEEeeeec
Confidence 4578999999999999999999999999999999999999999999999999999999999987 777 89999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 86543
No 157
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=6.6e-18 Score=117.39 Aligned_cols=77 Identities=23% Similarity=0.521 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC-eeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI-VTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~-~~i~gr~l~v~ 106 (211)
.+.++|||||||+++++++|+++|++||.|.+|.|+++ +||||||+|.+.++|++ +++. +.+.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45899999999999999999999999999999999874 78999999999999984 3444 35679999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
+|.++..
T Consensus 80 ~a~~k~~ 86 (89)
T 3d2w_A 80 NAEPKHN 86 (89)
T ss_dssp ECC----
T ss_pred EcCCCCc
Confidence 9976543
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=5.6e-18 Score=134.64 Aligned_cols=83 Identities=19% Similarity=0.357 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
...++|||+|||.++++++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|.+|++.|||. .|+|+.|.|.+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLF-DLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BCSSSBCEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCC-EeCCcEEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
+...
T Consensus 202 a~~~ 205 (216)
T 2qfj_A 202 AVTP 205 (216)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 8654
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=2.5e-18 Score=131.42 Aligned_cols=80 Identities=20% Similarity=0.395 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++ ++|. .++|+.|.|.||.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~-~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFI-DFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEE-CSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCE-EeCCeEEEEeecC
Confidence 6799999999999999999999999999999999999999999999999999999999998 7887 9999999999986
Q ss_pred CC
Q 038096 110 QD 111 (211)
Q Consensus 110 ~~ 111 (211)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 160
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=3.6e-18 Score=124.21 Aligned_cols=75 Identities=24% Similarity=0.303 Sum_probs=66.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE-----E
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT-----L 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~-----l 103 (211)
..++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||. .|+|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~-~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT-KFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC-BCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC-EECCcEeeeEEE
Confidence 3689999999999999999999999999999999875 99999999999999999999998 999988 7
Q ss_pred EEEecCCC
Q 038096 104 RFALSGQD 111 (211)
Q Consensus 104 ~v~~a~~~ 111 (211)
+|..+.+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 77776553
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=9.8e-18 Score=131.28 Aligned_cols=84 Identities=19% Similarity=0.306 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||+|||+++++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|++||.. +|. .|+|+.|.|.||
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~-~~~G~~i~v~~a 180 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH-TVNGHNCEVRKA 180 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC-EETTEECEEEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCc-EECCEEEEEEec
Confidence 468999999999999999999999999999999999998999999999999999999999987 787 999999999999
Q ss_pred CCCccC
Q 038096 109 GQDKNA 114 (211)
Q Consensus 109 ~~~~~~ 114 (211)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 776554
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=7.4e-18 Score=134.79 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=75.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|..|.|++|. +.++|||||+|.+.++|++||+.|||. .|+|+.|.|.+|.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~-~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM-LLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCC-EECCEEEEEEEcC
Confidence 5789999999999999999999999999999999986 458999999999999999999999998 9999999999997
Q ss_pred CCcc
Q 038096 110 QDKN 113 (211)
Q Consensus 110 ~~~~ 113 (211)
++..
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 6543
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=7.9e-18 Score=129.37 Aligned_cols=78 Identities=23% Similarity=0.238 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC--eEEEEEe
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN--RTLRFAL 107 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l~v~~ 107 (211)
..+|||+||++.+++++|+++|++||.|.+|.|..+ .++|||||+|.+.++|++|++.|||. .|.| +.|+|+|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~-~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTB-CSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCC-EecCCCcEEEEEE
Confidence 456899999999999999999999999999998643 35799999999999999999999998 8865 9999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
|++..
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98653
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=1.7e-17 Score=122.99 Aligned_cols=77 Identities=25% Similarity=0.294 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccE-EEEEeCCHHHHHHHHHHcCCCeeeCC--eEEEEE
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF-AFVEYESEEIGHYAIKLFSGIVTLYN--RTLRFA 106 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~-aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l~v~ 106 (211)
-..|||+||++.+++++|+++|++||.|.+|.|..+ .+|| |||+|.+.++|++|++.|||. .|.| +.|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~-~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQ-NIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTC-EEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCC-eecCCCcEEEEE
Confidence 356889999999999999999999999999988753 3688 999999999999999999999 8888 899999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
||+...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 997654
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.73 E-value=1.1e-17 Score=132.97 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||.++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|++.|+|. .|+|+.|.|.++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~-~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSV-MLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSC-CCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCC-eeCCeeEEEecCC
Confidence 689999999999999999999999999999999999989999999999999999999999999998 9999999999876
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 166
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6e-18 Score=116.92 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=67.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|++||.|.+|.|+++ ++|||||+|.+.++|++|+.. . +.+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~-~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--D-LIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--E-EEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--C-ceeCCEEEEEEe
Confidence 45799999999999999999999999999999999865 679999999999999865332 2 467999999999
Q ss_pred cCCCccC
Q 038096 108 SGQDKNA 114 (211)
Q Consensus 108 a~~~~~~ 114 (211)
+.++...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8766543
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=2e-17 Score=132.03 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=72.5
Q ss_pred CCCeEEEcCCC-CCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLD-EKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp-~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
++++|||+||+ +.+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.|||. .+.|+.|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~-~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNN-FMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCC-EECCceEEEEE
Confidence 47999999999 899999999999999999999998753 699999999999999999999998 99999999999
Q ss_pred cCCCc
Q 038096 108 SGQDK 112 (211)
Q Consensus 108 a~~~~ 112 (211)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 87543
No 168
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=116.10 Aligned_cols=76 Identities=13% Similarity=0.268 Sum_probs=67.0
Q ss_pred CCCCe-EEEcCCCCCCcHHH----HHHHHhcC-CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe
Q 038096 28 NSGCN-VYIGNLDEKVNERV----LYDILIQA-GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR 101 (211)
Q Consensus 28 ~~~~~-lfVgnLp~~~~e~~----L~~~F~~~-G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr 101 (211)
++..+ |||+|||+++++++ |+++|++| |.|.+| |+ |+|||+|.+.++|++|++.|||. .+.||
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~-~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE-DVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC-CSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC-ccCCc
Confidence 34555 99999999999988 55899999 599998 34 99999999999999999999998 99999
Q ss_pred EEEEEecCCCccC
Q 038096 102 TLRFALSGQDKNA 114 (211)
Q Consensus 102 ~l~v~~a~~~~~~ 114 (211)
.|+|++|+.....
T Consensus 75 ~i~v~~A~~~sd~ 87 (96)
T 2diu_A 75 RIIVSFTPKNREL 87 (96)
T ss_dssp CCEEESSCCSCCC
T ss_pred eEEEEecCCCcce
Confidence 9999999776553
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-17 Score=126.43 Aligned_cols=80 Identities=26% Similarity=0.466 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
++|||+|||.++++++|+++|++||.|.++.|+.++. ++++|||||+|.+.++|++|++.|+|. .+.|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGK-QIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCC-ccCCCeeEEEEcCC
Confidence 5899999999999999999999999999999999975 789999999999999999999999998 99999999999865
Q ss_pred Cc
Q 038096 111 DK 112 (211)
Q Consensus 111 ~~ 112 (211)
..
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=1.8e-17 Score=113.92 Aligned_cols=72 Identities=29% Similarity=0.529 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcC----C-------CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~ 96 (211)
.+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~- 75 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI- 75 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC-
Confidence 347899999999999999999999999 8 9999999754 699999999999999999 99998
Q ss_pred eeCCeEEEEEe
Q 038096 97 TLYNRTLRFAL 107 (211)
Q Consensus 97 ~i~gr~l~v~~ 107 (211)
.++|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999874
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=4.1e-17 Score=120.22 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccE-EEEEeCCHHHHHHHHHHcCCCeeeCC--eEEEEEec
Q 038096 32 NVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGF-AFVEYESEEIGHYAIKLFSGIVTLYN--RTLRFALS 108 (211)
Q Consensus 32 ~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~-aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l~v~~a 108 (211)
.|||+||++.+++++|+++|++||.|.+|.|.. + .|| |||+|.+.++|++|++.|||. .|.| +.|+|.+|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~-~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGA-DIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTC-CCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCC-EecCCCeEEEEEEe
Confidence 468999999999999999999999999999865 2 286 999999999999999999998 8887 69999999
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.6e-17 Score=125.65 Aligned_cols=80 Identities=30% Similarity=0.456 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC--eEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN--RTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g--r~l~v 105 (211)
...++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||. .++| ++|+|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V 165 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSV 165 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEE
Confidence 45789999999999999999999999999999999999988999999999999999999999999998 8988 89999
Q ss_pred Eec
Q 038096 106 ALS 108 (211)
Q Consensus 106 ~~a 108 (211)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=1.8e-17 Score=121.69 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|| ++++++|+++|++||.|.+|.|. .++|||||+|.+.++|++||+.|||. .|+|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~-~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT-QVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC-BCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEE
Confidence 345899999996 69999999999999999999985 56799999999999999999999998 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
|+....
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 997654
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=1.8e-17 Score=126.54 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
++++|||+|||+++++++|+++|+.||.|.+|.|++++.+|.++|||||+|.+.++|++|++. +. .++|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QH-ILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CC-EETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cc-ccCCeEcccccc
Confidence 368999999999999999999999999999999999999999999999999999999999995 44 899999999997
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 79 ~~~~ 82 (167)
T 2cjk_A 79 IPRD 82 (167)
T ss_dssp CCHH
T ss_pred cchh
Confidence 6543
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=3.2e-17 Score=124.76 Aligned_cols=79 Identities=22% Similarity=0.378 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE--EEEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT--LRFA 106 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~--l~v~ 106 (211)
..++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|++.|||. .++|+. |.|+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~i~v~ 165 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVK 165 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-ccCCCccceEEE
Confidence 4689999999999999999999999999999999999988999999999999999999999999998 999974 8888
Q ss_pred ec
Q 038096 107 LS 108 (211)
Q Consensus 107 ~a 108 (211)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=4.4e-17 Score=125.06 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC---CeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY---NRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~---gr~l~ 104 (211)
...++|||+|||.++++++|+++|++||.|..+.++++. +|.++|||||+|.+.++|++|++.|||. .+. |+.|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~~~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA-QTMEGCSSPMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS-CCCTTCSSCCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC-cccCCCCCCeE
Confidence 357899999999999999999999999999999999996 4999999999999999999999999998 555 48999
Q ss_pred EEecC
Q 038096 105 FALSG 109 (211)
Q Consensus 105 v~~a~ 109 (211)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=2.6e-17 Score=126.34 Aligned_cols=83 Identities=17% Similarity=0.394 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCC--CCccEEEEEeCCHHHHHHHHHHcCCCeeeC---CeEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETD--KPKGFAFVEYESEEIGHYAIKLFSGIVTLY---NRTL 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg--~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~---gr~l 103 (211)
+.++|||+|||+++++++|+++|++||.|.+|.|++++.++ +++|||||+|.+.++|++|++.|+|. .+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-KVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc-EEccCCccce
Confidence 47899999999999999999999999999999999999877 89999999999999999999999997 555 4678
Q ss_pred EEEecCCCc
Q 038096 104 RFALSGQDK 112 (211)
Q Consensus 104 ~v~~a~~~~ 112 (211)
.+.++....
T Consensus 81 ~~~~~~~~~ 89 (175)
T 3nmr_A 81 QMKPADSEK 89 (175)
T ss_dssp EEEECGGGC
T ss_pred EEccccccc
Confidence 888865443
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.1e-16 Score=114.72 Aligned_cols=81 Identities=17% Similarity=0.069 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCC-----CCcHHHHHHHHhcCCCeEEEEEccCCCC-CCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE
Q 038096 29 SGCNVYIGNLDE-----KVNERVLYDILIQAGRVVDLYIPRDKET-DKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT 102 (211)
Q Consensus 29 ~~~~lfVgnLp~-----~~~e~~L~~~F~~~G~i~~v~i~~d~~t-g~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~ 102 (211)
+++.|+|.||-. +-++++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|++|++.|||. .++|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~-~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR-YFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC-EETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC-EECCcE
Confidence 478999999962 2368999999999999999999998764 689999999999999999999999999 999999
Q ss_pred EEEEecCC
Q 038096 103 LRFALSGQ 110 (211)
Q Consensus 103 l~v~~a~~ 110 (211)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=1.1e-16 Score=132.71 Aligned_cols=82 Identities=27% Similarity=0.536 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLY----DILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRT 102 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~----~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~ 102 (211)
..+.++|||+|||+++++++|+ ++|++||.|.+|.|++ +++++|||||+|.+.++|++||+.|||. .|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF-PFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCC-eeCCcE
Confidence 3558999999999999999976 8999999999999886 5889999999999999999999999998 999999
Q ss_pred EEEEecCCCc
Q 038096 103 LRFALSGQDK 112 (211)
Q Consensus 103 l~v~~a~~~~ 112 (211)
|+|.|++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999987654
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.2e-16 Score=126.38 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSG 109 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~ 109 (211)
.++|||+|||+++++++|+++|++||.|..|.|+++.. |.++|||||+|.+.++|++||+.++ . .++|+.|.|.|+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~-~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-Q-KYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-C-EETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-C-eECCEEEEEEEhH
Confidence 58999999999999999999999999999999999874 8999999999999999999998765 4 7999999999986
Q ss_pred CCc
Q 038096 110 QDK 112 (211)
Q Consensus 110 ~~~ 112 (211)
.-.
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 543
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=1.3e-16 Score=122.91 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
..++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|||. .|+|+.|.|.||
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~i~v~~a 171 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA-EIDGRSVSLYYT 171 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEE-EETTEEEEEEEC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCC-EECCeEEEEEec
Confidence 46899999999999999999999999988776 456899999999999999999999999998 999999999999
Q ss_pred CCC
Q 038096 109 GQD 111 (211)
Q Consensus 109 ~~~ 111 (211)
.++
T Consensus 172 ~~k 174 (175)
T 1fje_B 172 GEK 174 (175)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.67 E-value=1.9e-16 Score=131.75 Aligned_cols=82 Identities=21% Similarity=0.348 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEccCCC-CCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 28 NSGCNVYIGNLDEK-VNERVLYDILIQAGRVVDLYIPRDKE-TDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~-~~e~~L~~~F~~~G~i~~v~i~~d~~-tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
...++|||+|||+. +++++|+++|+.||.|..|.|+.+.. ||.++|||||+|.+.++|.+|+ .|||. .|+|+.|.|
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~-~~~g~~i~V 285 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS-LLGNREISV 285 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE-EETTEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC-EECCcEEEE
Confidence 45799999999999 99999999999999999999999887 6999999999999999999999 99998 999999999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
.||.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999764
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=1.3e-16 Score=129.96 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCC---------cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 28 NSGCNVYIGNLDEKV---------NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~---------~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
.+.++||||||+..+ +|++|+++|++||.|.+|.|+. ++|||||+|.+.++|+.|++.|+|. .|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~-~l 204 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ-TL 204 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC-CC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC-EE
Confidence 457999999999998 7999999999999999999985 4699999999999999999999998 78
Q ss_pred ------------CCeEEEEEecCCCc
Q 038096 99 ------------YNRTLRFALSGQDK 112 (211)
Q Consensus 99 ------------~gr~l~v~~a~~~~ 112 (211)
.|+.|.|.||..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=3.7e-16 Score=129.56 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
++..++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|. .++|+.|.|.
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~i~v~ 170 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK-PLGPRTLYVH 170 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEE
Confidence 355789999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
++....
T Consensus 171 ~a~~~~ 176 (284)
T 3smz_A 171 WTDAGQ 176 (284)
T ss_dssp ECCGGG
T ss_pred ECCCCC
Confidence 986543
No 185
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=2.4e-16 Score=127.27 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDE-KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~-~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
+++++|||+|||+ ++++++|+++|++||.|.+|.|++++ +|||||+|.+.++|++|++.|||. .+.|+.|.|.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~-~~~g~~l~v~ 105 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRIT 105 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTC-BCSSSBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCC-eECCeEEEEE
Confidence 4589999999999 99999999999999999999999875 699999999999999999999998 9999999999
Q ss_pred ecCCC
Q 038096 107 LSGQD 111 (211)
Q Consensus 107 ~a~~~ 111 (211)
++...
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98755
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=4.6e-16 Score=128.97 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCC-cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 28 NSGCNVYIGNLDEKV-NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~-~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
...++|||+|||+.+ ++++|+++|+.||.|..+.|+.+. +|.++|||||+|.+.++|.+|++.|||. .++|+.|.|.
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~l~v~ 259 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGL-SLGGSHLRVS 259 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTC-EETTEECEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCeEEEEE
Confidence 457899999999995 999999999999999999999987 6999999999999999999999999998 9999999999
Q ss_pred ecCCCcc
Q 038096 107 LSGQDKN 113 (211)
Q Consensus 107 ~a~~~~~ 113 (211)
|+.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9977654
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=7.4e-16 Score=127.60 Aligned_cols=76 Identities=20% Similarity=0.326 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC-CeEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY-NRTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~-gr~l~v~ 106 (211)
...++|||+|||.++++++|+++|++||.|.+|.|+.++ +|||||+|.+.++|++|++.|||. .|+ |+.|+|.
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGF-KITQNNAMKIS 278 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCc-EeCCCCEEEEE
Confidence 457899999999999999999999999999999998654 589999999999999999999998 898 9999999
Q ss_pred ecC
Q 038096 107 LSG 109 (211)
Q Consensus 107 ~a~ 109 (211)
||+
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 985
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.64 E-value=7.9e-17 Score=124.14 Aligned_cols=83 Identities=20% Similarity=0.320 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEE
Q 038096 27 SNSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFA 106 (211)
Q Consensus 27 s~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~ 106 (211)
..+.++|||+|||+++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|++||+ |||. .+.|+.|.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~-~~~g~~l~v~ 86 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL-KVFGNEIKLE 86 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGE-EETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCC-EeCCeEEEEe
Confidence 345899999999999999999999999998766 445556679999999999999999999995 9998 9999999999
Q ss_pred ecCCCc
Q 038096 107 LSGQDK 112 (211)
Q Consensus 107 ~a~~~~ 112 (211)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987643
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3e-16 Score=123.43 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=72.3
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEec
Q 038096 30 GCNVYIGNLDE-KVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALS 108 (211)
Q Consensus 30 ~~~lfVgnLp~-~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a 108 (211)
+++|||+|||+ ++++++|+++|++||.|.+|.|++++ +|||||+|.+.++|++|++.|||. .++|+.|.|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~-~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGH-KLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTC-CCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC-eecCeEEEEEEe
Confidence 68999999999 99999999999999999999999875 699999999999999999999998 999999999998
Q ss_pred CCCc
Q 038096 109 GQDK 112 (211)
Q Consensus 109 ~~~~ 112 (211)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7653
No 190
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.62 E-value=3.1e-16 Score=112.12 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=65.5
Q ss_pred EEcCCCCCCcHHHHHHHH------------hcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe
Q 038096 34 YIGNLDEKVNERVLYDIL------------IQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR 101 (211)
Q Consensus 34 fVgnLp~~~~e~~L~~~F------------~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr 101 (211)
.++||++.+++++|++.| ++||.|.+|.|+++.. ++++|||||+|.+.++|++|++.|||. .++|+
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~-~~~Gr 96 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNR-WFNGQ 96 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTC-EETTE
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCC-EECCE
Confidence 367888888888887766 9999999999999875 789999999999999999999999999 99999
Q ss_pred EEEEEec
Q 038096 102 TLRFALS 108 (211)
Q Consensus 102 ~l~v~~a 108 (211)
.|+|.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=4.1e-15 Score=107.34 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCc-----------HHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCe
Q 038096 28 NSGCNVYIGNLDEKVN-----------ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIV 96 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~-----------e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~ 96 (211)
.++++|+|.||-.... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~- 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR- 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC-
Confidence 4479999999943332 6899999999999999966 543 37999999999999999999999998
Q ss_pred eeCCeEEEEEecCCCc
Q 038096 97 TLYNRTLRFALSGQDK 112 (211)
Q Consensus 97 ~i~gr~l~v~~a~~~~ 112 (211)
.|+|+.|+|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999987644
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=9.3e-16 Score=122.29 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCe--EEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCe----
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRV--VDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNR---- 101 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i--~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr---- 101 (211)
+++++|||+|||+++++++|+++|++||.| .++++..++ +..+|||||+|.+.++|.+||..|||. .|.|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~-~~~g~~~~~ 197 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHY-QMKNPNGPY 197 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC-EECCSSSSS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC-CccCCCCCc
Confidence 457899999999999999999999999999 899998875 566799999999999999999999998 89887
Q ss_pred EEEEEec
Q 038096 102 TLRFALS 108 (211)
Q Consensus 102 ~l~v~~a 108 (211)
++.|++|
T Consensus 198 p~~vk~~ 204 (205)
T 3tyt_A 198 PYTLKLC 204 (205)
T ss_dssp CEECEEE
T ss_pred ceEEEec
Confidence 4666554
No 193
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=3.3e-15 Score=106.90 Aligned_cols=81 Identities=21% Similarity=0.161 Sum_probs=70.8
Q ss_pred CCCeEEEcCC--CCCCc--------HHHHHHHHhcCCCeEEEEEccCCCC--CCCccEEEEEeCCHHHHHHHHHHcCCCe
Q 038096 29 SGCNVYIGNL--DEKVN--------ERVLYDILIQAGRVVDLYIPRDKET--DKPKGFAFVEYESEEIGHYAIKLFSGIV 96 (211)
Q Consensus 29 ~~~~lfVgnL--p~~~~--------e~~L~~~F~~~G~i~~v~i~~d~~t--g~~rg~aFV~f~~~~~A~~Ai~~lng~~ 96 (211)
+++.|.+.|+ +.++. +++|++.|++||.|.+|.|++++.+ +.++|||||+|.+.++|++|++.|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~- 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR- 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC-
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC-
Confidence 4788899988 33443 3689999999999999999998865 468999999999999999999999999
Q ss_pred eeCCeEEEEEecCC
Q 038096 97 TLYNRTLRFALSGQ 110 (211)
Q Consensus 97 ~i~gr~l~v~~a~~ 110 (211)
.++||.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.60 E-value=2.6e-15 Score=124.94 Aligned_cols=83 Identities=18% Similarity=0.400 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
..++|||+|||+++++++|+++|+.|| .|..|.|+.++. |.++|||||+|.+.++|++|++.|+|. .++|+.|.|.+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGL-KIEGYTLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC-EeCCcEEEEEE
Confidence 478999999999999999999999999 999999999876 889999999999999999999999998 99999999999
Q ss_pred cCCCcc
Q 038096 108 SGQDKN 113 (211)
Q Consensus 108 a~~~~~ 113 (211)
+.+...
T Consensus 194 a~~~~~ 199 (292)
T 2ghp_A 194 SNPLEK 199 (292)
T ss_dssp CCCC--
T ss_pred CCCCcc
Confidence 876543
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=3.5e-15 Score=116.81 Aligned_cols=76 Identities=25% Similarity=0.468 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC----C-------CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCee
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVT 97 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~ 97 (211)
..++|||+|||+++++++|+++|+.| | .|.++.+ +.++|||||+|.+.++|++|| .|||. .
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~-~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGI-I 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTE-E
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCC-E
Confidence 37999999999999999999999999 5 6677766 556799999999999999999 89998 9
Q ss_pred eCCeEEEEEecCCCc
Q 038096 98 LYNRTLRFALSGQDK 112 (211)
Q Consensus 98 i~gr~l~v~~a~~~~ 112 (211)
|+|+.|.|.++....
T Consensus 75 ~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQ 89 (198)
T ss_dssp ETTEEEEEECCCCCC
T ss_pred EcCceEEEeCCCCCC
Confidence 999999999987654
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=118.76 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC-CeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY-NRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~-gr~l~v 105 (211)
+++++|||+|||..+++++|+++|+.|| .|..+.|+.+ .+|+|||+|.+.++|.+|++.|||. .++ |+.|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~-~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSS-CCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCC-ccCCCCeEEE
Confidence 4578999999999999999999999999 9999999764 2699999999999999999999998 899 999999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
.|+++.
T Consensus 192 ~~a~~~ 197 (198)
T 1qm9_A 192 SFSKST 197 (198)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998653
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=3.2e-15 Score=114.50 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC----C-------CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCee
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQA----G-------RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVT 97 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~----G-------~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~ 97 (211)
+.++|||+|||+++++++|+++|++| | .|.++.+. .++|||||+|.+.++|++|+ .+||. .
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~-~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGI-I 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTC-E
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCc-E
Confidence 36899999999999999999999999 7 77888774 45799999999999999999 89998 9
Q ss_pred eCCeEEEEEecCCC
Q 038096 98 LYNRTLRFALSGQD 111 (211)
Q Consensus 98 i~gr~l~v~~a~~~ 111 (211)
++|+.|.|.++...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY 88 (172)
T ss_dssp ETTEECEEECCSSC
T ss_pred ecCceeeecCCccc
Confidence 99999999987554
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=3.3e-15 Score=122.91 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC---CeEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY---NRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~---gr~l~ 104 (211)
.++++|||+|||..+++++|+++|+.||.|..|.|+.| .+|.++|||||+|.+.++|.+||..||+...+. ++.|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999999999999999999999999999999 579999999999999999999999994431444 89999
Q ss_pred EEecCCCcc
Q 038096 105 FALSGQDKN 113 (211)
Q Consensus 105 v~~a~~~~~ 113 (211)
|.++.....
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 999876543
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=1.2e-14 Score=117.32 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCC-CeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC-CeEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAG-RVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY-NRTLRF 105 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G-~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~-gr~l~v 105 (211)
.++++|||+|||.++++++|+++|++|| .|..+.|+.+ .+|||||+|.+.++|.+|++.|||. .++ |+.|+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~-~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNH-DLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTC-BSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCC-ccCCCCeEEE
Confidence 4579999999999999999999999999 9999999653 3699999999999999999999998 899 999999
Q ss_pred EecCCC
Q 038096 106 ALSGQD 111 (211)
Q Consensus 106 ~~a~~~ 111 (211)
.|+++.
T Consensus 223 ~~a~~~ 228 (229)
T 2adc_A 223 SFSKST 228 (229)
T ss_dssp EECSSC
T ss_pred EEecCC
Confidence 998653
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.59 E-value=4.5e-15 Score=122.10 Aligned_cols=77 Identities=25% Similarity=0.536 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEe
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFAL 107 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~ 107 (211)
.+.++|||+|||+++++++|+++|+.||.|..|.|.+ ++|||||+|.+.++|++|+..++|. .|.|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~-~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGT-ILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTC-EETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCc-EECCceeEeee
Confidence 4468999999999999999999999999999999964 4699999999999999999999998 99999999999
Q ss_pred cCCC
Q 038096 108 SGQD 111 (211)
Q Consensus 108 a~~~ 111 (211)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8654
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.56 E-value=1e-14 Score=106.45 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=71.1
Q ss_pred CCCeEEEcCCC--CCC---cHHHHHHHHhcCCCeEEEEEccCCC----CCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC
Q 038096 29 SGCNVYIGNLD--EKV---NERVLYDILIQAGRVVDLYIPRDKE----TDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY 99 (211)
Q Consensus 29 ~~~~lfVgnLp--~~~---~e~~L~~~F~~~G~i~~v~i~~d~~----tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~ 99 (211)
+++.|++.|+- .++ -++||++.|++||.|.+|.|++++. ++.++||+||+|.+.++|.+|++.|||. .++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr-~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC-EET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC-EEC
Confidence 47899999984 222 3689999999999999999999865 4578899999999999999999999999 999
Q ss_pred CeEEEEEecCC
Q 038096 100 NRTLRFALSGQ 110 (211)
Q Consensus 100 gr~l~v~~a~~ 110 (211)
||.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999754
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=3.6e-14 Score=121.18 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=66.4
Q ss_pred CCCCCCeEEEcC--CCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee---CC
Q 038096 26 NSNSGCNVYIGN--LDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL---YN 100 (211)
Q Consensus 26 ~s~~~~~lfVgn--Lp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i---~g 100 (211)
.+.++++||||| |++.++|++|+++|++||.|.+|.+.. +||||||+|.+.++|++||+.|||+ .+ .|
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~-~~~~~~g 86 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK-EVVDDLG 86 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC-EEECTTS
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC-ccccccC
Confidence 356789999999 578999999999999999999988754 4699999999999999999999999 55 24
Q ss_pred e--EEEEEecC
Q 038096 101 R--TLRFALSG 109 (211)
Q Consensus 101 r--~l~v~~a~ 109 (211)
+ .|.+.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 57788874
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.5e-14 Score=98.95 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=58.3
Q ss_pred CCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCCCcc
Q 038096 40 EKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQDKN 113 (211)
Q Consensus 40 ~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~~~~ 113 (211)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++||+.++ .+.|+.|+|.|++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~---~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV---GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC---BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC---CCCCCeEEEEEccCCCC
Confidence 468999999999999999999987 4688999999999999999999865 46799999999876543
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=5.5e-13 Score=96.67 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCeEEEcCCCC--CC--------cHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC
Q 038096 30 GCNVYIGNLDE--KV--------NERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY 99 (211)
Q Consensus 30 ~~~lfVgnLp~--~~--------~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~ 99 (211)
++.|.+.|+=. +. -++||++.|++||.|.+|.|.++. .+|||||+|.+.++|++|++.|||. .++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~-~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR-WFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC-EET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC-EEC
Confidence 56777777632 11 135889999999999999997653 5899999999999999999999999 999
Q ss_pred CeEEEEEecCC
Q 038096 100 NRTLRFALSGQ 110 (211)
Q Consensus 100 gr~l~v~~a~~ 110 (211)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=8.7e-12 Score=85.94 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCC----CCCcH----HHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeC
Q 038096 28 NSGCNVYIGNLD----EKVNE----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLY 99 (211)
Q Consensus 28 ~~~~~lfVgnLp----~~~~e----~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~ 99 (211)
++..+|+|.-++ .++.. .+|.+.|++||.|..++|+.|+ +||+|.+.++|.+||+ |||. .++
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~-~v~ 74 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK-ELL 74 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC-EET
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe-EeC
Confidence 557888888766 22333 5789999999999999998864 8999999999999999 9998 999
Q ss_pred CeEEEEEecCCCcc
Q 038096 100 NRTLRFALSGQDKN 113 (211)
Q Consensus 100 gr~l~v~~a~~~~~ 113 (211)
|+.|+|+++.++..
T Consensus 75 Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 75 NRTITIALKSPSGP 88 (91)
T ss_dssp TEEEEEEECCCSSC
T ss_pred CeEEEEEeCCCCcc
Confidence 99999999887654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1e-11 Score=90.53 Aligned_cols=76 Identities=12% Similarity=0.126 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCC-HHHHHHHHHHcC-CCeeeCCeEEE
Q 038096 28 NSGCNVYIGNLDEK-VNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYES-EEIGHYAIKLFS-GIVTLYNRTLR 104 (211)
Q Consensus 28 ~~~~~lfVgnLp~~-~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~-~~~A~~Ai~~ln-g~~~i~gr~l~ 104 (211)
+.++.|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||.|.+ .++|.+|++.+| +.++|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 56899999999999 99999999999999999999988764 59999999 899999999985 22489998888
Q ss_pred EEecC
Q 038096 105 FALSG 109 (211)
Q Consensus 105 v~~a~ 109 (211)
+....
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=7.8e-11 Score=81.59 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCC-----CcH----HHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeee
Q 038096 28 NSGCNVYIGNLDEK-----VNE----RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTL 98 (211)
Q Consensus 28 ~~~~~lfVgnLp~~-----~~e----~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i 98 (211)
++..+|+|.-++.. +.. .+|.+.|.+||.|..++|..|+ +||+|.+.++|.+||+ |||. .+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~-~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM-KV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS-EE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe-ee
Confidence 66889999888632 222 4689999999999999999874 9999999999999999 9998 99
Q ss_pred CCeEEEEEec
Q 038096 99 YNRTLRFALS 108 (211)
Q Consensus 99 ~gr~l~v~~a 108 (211)
+||.|+|++.
T Consensus 83 ~Gr~L~V~~k 92 (95)
T 1ufw_A 83 KGRAVKISGP 92 (95)
T ss_dssp TTEEEEEECC
T ss_pred CCeEEEEecc
Confidence 9999999874
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.12 E-value=1.3e-10 Score=93.02 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=60.8
Q ss_pred CcHHHHHHHHhcCCCeEEEEEccC----CCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEEEecCC
Q 038096 42 VNERVLYDILIQAGRVVDLYIPRD----KETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRFALSGQ 110 (211)
Q Consensus 42 ~~e~~L~~~F~~~G~i~~v~i~~d----~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v~~a~~ 110 (211)
-.+++|++.|++||.|.++.|.++ ..++.++|++||+|.+.++|++|++.|||. .++||.|.+.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr-~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR-WFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC-BSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc-eECCeEEEEEEcCH
Confidence 356799999999999999999844 455699999999999999999999999999 99999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.9e-07 Score=65.13 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=67.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhcC-----CCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQA-----GRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~~-----G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
..++|-+=|||..+++..++.++..+ |.|+.+.+..|. +-|+|+|.+...|.+|.-.|+|. +|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~-ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGS-QFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSE-EETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCe-eecCeEE
Confidence 36888888999999999999999999 999999998886 68999999999999999999998 9999999
Q ss_pred EEEec
Q 038096 104 RFALS 108 (211)
Q Consensus 104 ~v~~a 108 (211)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 98653
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.70 E-value=0.00039 Score=48.73 Aligned_cols=73 Identities=3% Similarity=0.011 Sum_probs=62.0
Q ss_pred CCeEEEcCCCCCC-c----HHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEE
Q 038096 30 GCNVYIGNLDEKV-N----ERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLR 104 (211)
Q Consensus 30 ~~~lfVgnLp~~~-~----e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~ 104 (211)
-++|+|.||+.++ . .+.++++|..|+++....+.+.- .-..|.|.+.++|.+|-..|++. .++|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~-~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKT-EFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTS-EETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccc-eecCceeE
Confidence 5789999999765 2 25778999999999887776543 35689999999999999999998 99999999
Q ss_pred EEecC
Q 038096 105 FALSG 109 (211)
Q Consensus 105 v~~a~ 109 (211)
|-++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99986
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.0015 Score=45.66 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=58.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHHhc-----CCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEE
Q 038096 29 SGCNVYIGNLDEKVNERVLYDILIQ-----AGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTL 103 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~L~~~F~~-----~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l 103 (211)
.+++|.|.|||..+.++.|+-+|+. -|.|..+.... +-|+|+|.+.+.|++.|+.-. ..|++..|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~--H~L~~~~L 76 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD--HELHGAQL 76 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC--CBSSSSBC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc--ceecCeEE
Confidence 4789999999999999999999987 36788886642 578999999999999998633 26888888
Q ss_pred EEEec
Q 038096 104 RFALS 108 (211)
Q Consensus 104 ~v~~a 108 (211)
.|...
T Consensus 77 sV~P~ 81 (104)
T 2dhx_A 77 SLRPA 81 (104)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 88664
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.50 E-value=0.0013 Score=45.06 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=60.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCC--CccEEEEEeCCHHHHHHHHHHcCCCeeeCCe----EEE
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDK--PKGFAFVEYESEEIGHYAIKLFSGIVTLYNR----TLR 104 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~--~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr----~l~ 104 (211)
++|.|.+||+.++|+++.+.++....+........+.+.. .-+-|+|.|.+.+++..-.+.++|.+-++.+ ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999998877766665554322 3467899999999999999999998444432 334
Q ss_pred EEec
Q 038096 105 FALS 108 (211)
Q Consensus 105 v~~a 108 (211)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.00062 Score=47.05 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 92 (211)
...+++ +.|.++...||.++|+.||. ..|.++.| --|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 344556 99999999999999999994 46777776 37999999999999999876
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.22 E-value=0.00044 Score=47.92 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=46.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFS 93 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln 93 (211)
..++| +.|.++...||.++|+.|| -..|.++.| --|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34556 9999999999999999999 567888877 479999999999999999764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.01 E-value=0.0051 Score=44.11 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=57.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCC-eEEEEE
Q 038096 28 NSGCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYN-RTLRFA 106 (211)
Q Consensus 28 ~~~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~g-r~l~v~ 106 (211)
...+-|-|-+.|... -+.+.+.|++||.|++.... ....+-.|.|.++.+|++||.. ||. .|+| -.|-|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~-ii~g~~mIGV~ 92 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGR-IFGESIMIGVK 92 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTC-EETTTEECEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCe-EecCCEEEEEE
Confidence 346778888999875 56777889999999998762 2347999999999999999987 898 7875 566776
Q ss_pred ec
Q 038096 107 LS 108 (211)
Q Consensus 107 ~a 108 (211)
+.
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.61 E-value=0.0098 Score=41.06 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCC--CccEEEEEeCCHHHHHHHHHHcCCCeeeCCe----EE
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDK--PKGFAFVEYESEEIGHYAIKLFSGIVTLYNR----TL 103 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~--~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr----~l 103 (211)
+-+|.|..||+.+||+++.+.++..-.+........+.+.+ .-.-|+|.|.+.++...-.+.++|.+-++.+ +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 57899999999999999888777654443333333222211 2356899999999999999999998444433 44
Q ss_pred EEEec
Q 038096 104 RFALS 108 (211)
Q Consensus 104 ~v~~a 108 (211)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 56665
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.43 E-value=0.0018 Score=48.15 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=29.0
Q ss_pred EEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 59 DLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 59 ~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
.+.|+.+. ++++|||||+|.+.++|++|++.+++.
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhccc
Confidence 45666665 468999999999999999999888764
No 218
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.39 E-value=0.0065 Score=44.23 Aligned_cols=77 Identities=9% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEE-EEEccCC--------CCC-----CCccEEEEEeCCHHHHHHHHHHcCCC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVD-LYIPRDK--------ETD-----KPKGFAFVEYESEEIGHYAIKLFSGI 95 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~-v~i~~d~--------~tg-----~~rg~aFV~f~~~~~A~~Ai~~lng~ 95 (211)
..-|.|-+.|.... ..+-+.|++||.|.+ .....+. .+. ....+-.|+|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 45666778887655 456677999999977 2222100 000 1357889999999999999987 898
Q ss_pred eeeCCeEEEEEecC
Q 038096 96 VTLYNRTLRFALSG 109 (211)
Q Consensus 96 ~~i~gr~l~v~~a~ 109 (211)
.|+|..|-|.+..
T Consensus 85 -ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 -VFNGVLLGVIPYT 97 (132)
T ss_dssp -EETTEECEEEECC
T ss_pred -EeCcEEEEEEECC
Confidence 8999988888754
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.24 E-value=0.0021 Score=56.58 Aligned_cols=56 Identities=21% Similarity=0.158 Sum_probs=42.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHH
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKL 91 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ 91 (211)
.+.|||. .+..+++++|.++|++||.|.++..-.++. -||.|+|.+.++++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 4789997 799999999999999999999998876542 7999999999999877654
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.66 E-value=0.004 Score=45.95 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=36.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHc-CCCeeeCCeEEEEEecCCC
Q 038096 69 DKPKGFAFVEYESEEIGHYAIKLF-SGIVTLYNRTLRFALSGQD 111 (211)
Q Consensus 69 g~~rg~aFV~f~~~~~A~~Ai~~l-ng~~~i~gr~l~v~~a~~~ 111 (211)
..-+|+++|+|.+.++|++|++.+ ||. .++| .|.+.++...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~-~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN-GVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH-TCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC-CCCC-ceecccccCc
Confidence 467899999999999999999999 998 9999 9999987643
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.55 E-value=0.62 Score=41.37 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcC
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFS 93 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~ln 93 (211)
...++|+ ++..+...+|.+.|+.||. .+|.++.| ..|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3456676 8888899999999999995 46777665 469999999999999999884
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=70.99 E-value=0.93 Score=31.36 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=0.0
Q ss_pred CCCeEEEcCCCCCCcHHH
Q 038096 29 SGCNVYIGNLDEKVNERV 46 (211)
Q Consensus 29 ~~~~lfVgnLp~~~~e~~ 46 (211)
..++|||+|||+++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 356899999999999864
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.34 E-value=15 Score=23.02 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=41.6
Q ss_pred eEEEcCC-CCCCcHHHHHHHHhcCCC-----eEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHcCCCeeeCCeEEEE
Q 038096 32 NVYIGNL-DEKVNERVLYDILIQAGR-----VVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLFSGIVTLYNRTLRF 105 (211)
Q Consensus 32 ~lfVgnL-p~~~~e~~L~~~F~~~G~-----i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~lng~~~i~gr~l~v 105 (211)
++|++.= -..+...+|..++..-+. |-.+.|.. .|.||+-.. +.|..+++.|++. .+.|+.+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~-~i~g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNT-TVKGKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTC-CC---CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccc-cCcCceEEE
Confidence 4555422 245677788888876554 44466532 588998875 4578888889887 899999988
Q ss_pred EecC
Q 038096 106 ALSG 109 (211)
Q Consensus 106 ~~a~ 109 (211)
+.++
T Consensus 72 ~~~~ 75 (76)
T 2g0c_A 72 NKAN 75 (76)
T ss_dssp EECC
T ss_pred EECC
Confidence 7763
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.98 E-value=3.2 Score=30.51 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeC
Q 038096 45 RVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYE 80 (211)
Q Consensus 45 ~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~ 80 (211)
+|+.++|...|.|+... ..+|||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 45666677777665542 34699999965
No 225
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=35.51 E-value=49 Score=24.41 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=30.2
Q ss_pred CcHHHHHHHHhcCCCe---EEEEEccCCCCCCCccEEEEE
Q 038096 42 VNERVLYDILIQAGRV---VDLYIPRDKETDKPKGFAFVE 78 (211)
Q Consensus 42 ~~e~~L~~~F~~~G~i---~~v~i~~d~~tg~~rg~aFV~ 78 (211)
.++++|+++=.+.|.+ +++.|..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999988 456777775479999988875
No 226
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.75 E-value=93 Score=21.06 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHhc-CCC---eEEE-EEccCCCCCCCccEEEEEeCCHHHHHHH
Q 038096 40 EKVNERVLYDILIQ-AGR---VVDL-YIPRDKETDKPKGFAFVEYESEEIGHYA 88 (211)
Q Consensus 40 ~~~~e~~L~~~F~~-~G~---i~~v-~i~~d~~tg~~rg~aFV~f~~~~~A~~A 88 (211)
...+..+|++.+.+ |+. ++-| .+.+.-..|++.|||.| |.+.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56778888877754 443 2333 33333344677788876 6666665543
No 227
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.90 E-value=1e+02 Score=23.07 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=32.5
Q ss_pred eEEEcCCCC-C--------CcHHHHHHHH--hcCCCeEEEEEccCCCCCCCccEEEEEeCCHH
Q 038096 32 NVYIGNLDE-K--------VNERVLYDIL--IQAGRVVDLYIPRDKETDKPKGFAFVEYESEE 83 (211)
Q Consensus 32 ~lfVgnLp~-~--------~~e~~L~~~F--~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~ 83 (211)
.+.|-|++. . .+..+|++.| ..|..+. +..+.+. .-+.|++.|.|.+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 445556664 1 3456889977 9999875 4444444 347799999998543
No 228
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=26.39 E-value=1.1e+02 Score=20.74 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHhc-CCC---eEEE-EEccCCCCCCCccEEEEEeCCHHHHHH
Q 038096 40 EKVNERVLYDILIQ-AGR---VVDL-YIPRDKETDKPKGFAFVEYESEEIGHY 87 (211)
Q Consensus 40 ~~~~e~~L~~~F~~-~G~---i~~v-~i~~d~~tg~~rg~aFV~f~~~~~A~~ 87 (211)
...+..+|++-+.+ |+. ++-| .+.+.-..|++.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56778888877754 342 2333 34444345677888877 677666544
No 229
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=26.32 E-value=1.1e+02 Score=20.96 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhc-CCC---eEEE-EEccCCCCCCCccEEEEEeCCHHHHHH
Q 038096 40 EKVNERVLYDILIQ-AGR---VVDL-YIPRDKETDKPKGFAFVEYESEEIGHY 87 (211)
Q Consensus 40 ~~~~e~~L~~~F~~-~G~---i~~v-~i~~d~~tg~~rg~aFV~f~~~~~A~~ 87 (211)
...+..+|++-+++ |+. ++-| .+.+.-..|++.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888877653 443 2233 34344345778888877 777776654
No 230
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=25.19 E-value=1.6e+02 Score=19.67 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=45.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEccCCCCCCCccEEEEEeCCHHHHHHHHHHc
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPRDKETDKPKGFAFVEYESEEIGHYAIKLF 92 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~Ai~~l 92 (211)
.|-|-|-|+|..+-..++--.....|---.|..+. |-|.+.|.+.++...||..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 67788889999888888776677778777777654 77999999999999999765
No 231
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=25.12 E-value=6.6 Score=33.96 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHhcCCCeEEEE----EccCC-CCCCCccEE--EEEeCCHHH
Q 038096 47 LYDILIQAGRVVDLY----IPRDK-ETDKPKGFA--FVEYESEEI 84 (211)
Q Consensus 47 L~~~F~~~G~i~~v~----i~~d~-~tg~~rg~a--FV~f~~~~~ 84 (211)
|..+|..+|.|..|. ++.++ .+....|++ |+.|....+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~ 53 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRD 53 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCccc
Confidence 788999999998873 22222 122233444 777766443
No 232
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.03 E-value=68 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEcc
Q 038096 30 GCNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR 64 (211)
Q Consensus 30 ~~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~ 64 (211)
...+.|+|||+.++...|..++.. +.+..+.++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356789999999999999999987 6666554443
No 233
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.46 E-value=51 Score=20.62 Aligned_cols=12 Identities=17% Similarity=0.606 Sum_probs=9.3
Q ss_pred CccEEEEEeCCH
Q 038096 71 PKGFAFVEYESE 82 (211)
Q Consensus 71 ~rg~aFV~f~~~ 82 (211)
.++.+||.|+|.
T Consensus 36 ~~~~ClV~FeD~ 47 (68)
T 2e5p_A 36 AREVCLVQFEDD 47 (68)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 357899999873
No 234
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.40 E-value=45 Score=26.73 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=26.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHHhcCCCeEEEEEcc
Q 038096 31 CNVYIGNLDEKVNERVLYDILIQAGRVVDLYIPR 64 (211)
Q Consensus 31 ~~lfVgnLp~~~~e~~L~~~F~~~G~i~~v~i~~ 64 (211)
..+.|+|||+.++...|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999999999998655566655544
Done!