Query 038097
Match_columns 268
No_of_seqs 251 out of 1255
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 1.4E-14 3E-19 102.6 5.4 49 73-121 2-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 4.9E-14 1.1E-18 100.4 6.1 53 72-124 4-59 (60)
3 smart00353 HLH helix loop heli 99.4 4.7E-13 1E-17 93.5 6.7 49 77-125 1-52 (53)
4 KOG1318 Helix loop helix trans 99.3 8.6E-13 1.9E-17 127.3 5.2 63 66-128 227-293 (411)
5 KOG1319 bHLHZip transcription 99.3 1E-12 2.2E-17 114.8 5.0 63 67-129 57-126 (229)
6 KOG3561 Aryl-hydrocarbon recep 99.2 3E-11 6.5E-16 124.8 6.3 83 73-158 21-107 (803)
7 KOG4304 Transcriptional repres 99.1 5.1E-11 1.1E-15 109.1 2.5 60 69-128 29-96 (250)
8 KOG2483 Upstream transcription 98.5 2.1E-07 4.5E-12 84.5 7.4 58 70-127 57-117 (232)
9 KOG2588 Predicted DNA-binding 98.3 2.9E-07 6.4E-12 96.2 3.1 61 71-131 275-336 (953)
10 KOG3960 Myogenic helix-loop-he 98.2 4.4E-06 9.6E-11 76.4 6.7 58 72-129 118-177 (284)
11 KOG0561 bHLH transcription fac 98.1 2.4E-06 5.3E-11 79.9 3.8 58 71-128 59-118 (373)
12 KOG4029 Transcription factor H 98.0 4.5E-06 9.8E-11 75.1 4.2 59 71-129 108-170 (228)
13 PLN03217 transcription factor 98.0 6.2E-06 1.3E-10 64.0 4.3 49 84-132 19-73 (93)
14 KOG3910 Helix loop helix trans 98.0 9.5E-06 2.1E-10 80.2 5.3 59 69-127 523-585 (632)
15 KOG4447 Transcription factor T 96.4 0.0016 3.5E-08 55.8 1.9 53 72-124 78-132 (173)
16 KOG3898 Transcription factor N 95.7 0.019 4.2E-07 52.9 5.7 52 72-123 72-126 (254)
17 KOG3582 Mlx interactors and re 95.5 0.0038 8.3E-08 64.3 -0.1 81 71-159 650-735 (856)
18 KOG1924 RhoA GTPase effector D 94.9 0.28 6.1E-06 51.8 11.5 9 112-120 475-483 (1102)
19 KOG4395 Transcription factor A 93.7 0.094 2E-06 48.6 4.5 56 70-125 172-230 (285)
20 KOG3560 Aryl-hydrocarbon recep 93.5 0.067 1.4E-06 54.2 3.5 38 81-118 34-75 (712)
21 KOG1924 RhoA GTPase effector D 91.9 1.1 2.3E-05 47.7 9.7 13 104-116 454-466 (1102)
22 KOG3558 Hypoxia-inducible fact 90.0 0.25 5.5E-06 51.4 3.2 43 77-119 51-97 (768)
23 KOG3559 Transcriptional regula 88.9 0.43 9.3E-06 47.2 3.7 42 79-120 8-53 (598)
24 KOG4447 Transcription factor T 56.4 7.4 0.00016 33.8 1.8 47 79-125 29-77 (173)
25 KOG2893 Zn finger protein [Gen 50.7 43 0.00094 31.3 5.9 14 89-102 60-73 (341)
26 KOG3582 Mlx interactors and re 44.5 6.6 0.00014 41.4 -0.3 56 72-130 787-847 (856)
27 KOG1925 Rac1 GTPase effector F 42.6 99 0.0022 32.0 7.5 24 105-128 157-180 (817)
28 PHA03308 transcriptional regul 39.7 38 0.00083 36.4 4.2 10 11-20 1256-1265(1463)
29 COG3416 Uncharacterized protei 39.0 1.6E+02 0.0035 27.0 7.6 20 111-130 58-77 (233)
30 PF15392 Joubert: Joubert synd 32.7 89 0.0019 30.1 5.2 55 69-123 53-112 (329)
31 PTZ00405 cytochrome c; Provisi 30.4 89 0.0019 25.3 4.2 38 84-121 72-113 (114)
32 PF07743 HSCB_C: HSCB C-termin 27.5 1.1E+02 0.0024 22.4 4.0 45 80-125 33-77 (78)
33 PF02344 Myc-LZ: Myc leucine z 26.4 73 0.0016 20.6 2.4 16 81-96 14-29 (32)
34 KOG0132 RNA polymerase II C-te 25.0 2.7E+02 0.0058 30.3 7.5 9 120-128 519-527 (894)
35 PF14689 SPOB_a: Sensor_kinase 24.9 1.8E+02 0.0038 20.8 4.6 41 81-128 17-57 (62)
36 PF05687 DUF822: Plant protein 24.7 89 0.0019 26.9 3.4 25 72-96 11-38 (150)
37 COG3074 Uncharacterized protei 24.1 74 0.0016 24.3 2.4 23 110-132 13-35 (79)
38 KOG4571 Activating transcripti 24.1 1.1E+02 0.0024 29.2 4.1 21 105-125 269-289 (294)
39 TIGR00986 3a0801s05tom22 mitoc 23.4 60 0.0013 27.9 2.1 35 86-120 50-84 (145)
40 COG5129 MAK16 Nuclear protein 22.5 44 0.00095 30.9 1.2 42 43-84 252-293 (303)
41 KOG1029 Endocytic adaptor prot 21.6 3.9E+02 0.0084 29.3 7.9 11 245-255 180-190 (1118)
42 KOG4005 Transcription factor X 20.9 1.6E+02 0.0036 27.5 4.5 24 68-91 55-79 (292)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.52 E-value=1.4e-14 Score=102.64 Aligned_cols=49 Identities=51% Similarity=0.881 Sum_probs=46.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCC-----CCCchhhHHHHHHHHHHHHH
Q 038097 73 PEVHKRYERKRRDKINKKMRALQELIPNC-----NKVDKASMLEEAIDYLKTLQ 121 (268)
Q Consensus 73 r~~H~~~ERrRR~~In~~~~~L~~LVP~~-----~K~dKasIL~~AI~YIk~Lq 121 (268)
|..|+..||+||++||++|.+|+++||.+ .|++|++||+.||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999998 49999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.49 E-value=4.9e-14 Score=100.35 Aligned_cols=53 Identities=40% Similarity=0.681 Sum_probs=50.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHH
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC---NKVDKASMLEEAIDYLKTLQFQV 124 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~---~K~dKasIL~~AI~YIk~Lq~qv 124 (268)
.+..|+..||+||++||++|..|+.+||.. .|+||++||+.||+||++|+.++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999 69999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.42 E-value=4.7e-13 Score=93.49 Aligned_cols=49 Identities=41% Similarity=0.655 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCC---CCCCchhhHHHHHHHHHHHHHHHHH
Q 038097 77 KRYERKRRDKINKKMRALQELIPN---CNKVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 77 ~~~ERrRR~~In~~~~~L~~LVP~---~~K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
+..||+||++||++|..|+.+||. ..|.+|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 4599999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.34 E-value=8.6e-13 Score=127.33 Aligned_cols=63 Identities=35% Similarity=0.694 Sum_probs=56.4
Q ss_pred CCcccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHhhh
Q 038097 66 SNRKKRTPEVHKRYERKRRDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTLQFQVMMMS 128 (268)
Q Consensus 66 ~~kr~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~Lq~qv~~L~ 128 (268)
..|.+++|..||.+|||||++||++|++|..|||.|. |..|.+||..++|||+.||+..++..
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 3456667899999999999999999999999999995 88899999999999999998877444
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.34 E-value=1e-12 Score=114.84 Aligned_cols=63 Identities=35% Similarity=0.573 Sum_probs=55.4
Q ss_pred CcccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC-------CCchhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 67 NRKKRTPEVHKRYERKRRDKINKKMRALQELIPNCN-------KVDKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 67 ~kr~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~-------K~dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
+-+.|+|..|...||+||+.||.++..|+.|||.|. |++||.||.++||||.+|+.++..-+.
T Consensus 57 syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~ 126 (229)
T KOG1319|consen 57 SYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEE 126 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999999999999999999885 899999999999999999887765554
No 6
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=99.17 E-value=3e-11 Score=124.77 Aligned_cols=83 Identities=27% Similarity=0.304 Sum_probs=73.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCCCCcccchh
Q 038097 73 PEVHKRYERKRRDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTLQFQVMMMSMGTGVCMPSMMLPTGIIGMQ 148 (268)
Q Consensus 73 r~~H~~~ERrRR~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~Lq~qv~~L~~~~~~~~p~~~l~~~i~~l~ 148 (268)
|+.|+.+||||||++|..|.+|.+|||.|. |+||.+||++||++||.+++.-.+-......|+|.|+-.. +|.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~~~~~~~~~d~KpSflS~~---eL~ 97 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQESENSSIDQDYKPSFLSND---ELT 97 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhhcccccccccccccccchH---HHH
Confidence 778999999999999999999999999986 9999999999999999999876445555578999999987 999
Q ss_pred hhhhhcCCCC
Q 038097 149 QMHAVAPQMS 158 (268)
Q Consensus 149 ~~~~~a~~~~ 158 (268)
|++.+|+.-.
T Consensus 98 ~LmLeAlDGF 107 (803)
T KOG3561|consen 98 HLILEALDGF 107 (803)
T ss_pred HHHHHHhcCe
Confidence 9999886443
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=99.07 E-value=5.1e-11 Score=109.07 Aligned_cols=60 Identities=30% Similarity=0.454 Sum_probs=51.3
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC--------CCchhhHHHHHHHHHHHHHHHHHhhh
Q 038097 69 KKRTPEVHKRYERKRRDKINKKMRALQELIPNCN--------KVDKASMLEEAIDYLKTLQFQVMMMS 128 (268)
Q Consensus 69 r~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~--------K~dKasIL~~AI~YIk~Lq~qv~~L~ 128 (268)
+..++..|-++|||||+|||+++.+|++||+.+. |++||.||+.||+|++.||...+.-.
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~ 96 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA 96 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence 3345667899999999999999999999999653 88999999999999999988655433
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.54 E-value=2.1e-07 Score=84.52 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=49.4
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHHHHHHHHHHHHHhh
Q 038097 70 KRTPEVHKRYERKRRDKINKKMRALQELIPNCN--KVD-KASMLEEAIDYLKTLQFQVMMM 127 (268)
Q Consensus 70 ~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~--K~d-KasIL~~AI~YIk~Lq~qv~~L 127 (268)
..+|..||..||+||+.|+++|..|+.+||... +.. .++||++|++||+.|+.+....
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 345788999999999999999999999999876 333 7999999999999997665443
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.32 E-value=2.9e-07 Score=96.18 Aligned_cols=61 Identities=30% Similarity=0.517 Sum_probs=55.9
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC-CCchhhHHHHHHHHHHHHHHHHHhhhcCC
Q 038097 71 RTPEVHKRYERKRRDKINKKMRALQELIPNCN-KVDKASMLEEAIDYLKTLQFQVMMMSMGT 131 (268)
Q Consensus 71 ~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~-K~dKasIL~~AI~YIk~Lq~qv~~L~~~~ 131 (268)
.+|..||++|||.|..||++|.+|+++||+.. |+.|..+|.+||+||++|+...+.+...+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 45778999999999999999999999999886 99999999999999999999888877554
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.16 E-value=4.4e-06 Score=76.38 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=50.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHh-hCCCCC-CCchhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQE-LIPNCN-KVDKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~-LVP~~~-K~dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
+|..-.+.||||-.++||.|.+|+. -+++-+ ++-|+.||..||+||..||.-++++..
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~ 177 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQ 177 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455688999999999999999997 556654 899999999999999999999888764
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.10 E-value=2.4e-06 Score=79.87 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=50.5
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC--CCchhhHHHHHHHHHHHHHHHHHhhh
Q 038097 71 RTPEVHKRYERKRRDKINKKMRALQELIPNCN--KVDKASMLEEAIDYLKTLQFQVMMMS 128 (268)
Q Consensus 71 ~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~--K~dKasIL~~AI~YIk~Lq~qv~~L~ 128 (268)
-+|+.-|.-||||-.-||.+|..||.|+|... |++||.||+.+.+||..|..+.-+|-
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll 118 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELL 118 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccc
Confidence 35677788999999999999999999999765 99999999999999999976654444
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.03 E-value=4.5e-06 Score=75.13 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=51.8
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 71 RTPEVHKRYERKRRDKINKKMRALQELIPNC----NKVDKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 71 ~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~----~K~dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
..+..+|..||.|-..+|..|.+||.+||.. .|++|..+|..||.||++|+.-++.-+.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 3466788889999999999999999999964 4899999999999999999988776554
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.03 E-value=6.2e-06 Score=64.05 Aligned_cols=49 Identities=31% Similarity=0.488 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhCCCCC------CCchhhHHHHHHHHHHHHHHHHHhhhcCCC
Q 038097 84 RDKINKKMRALQELIPNCN------KVDKASMLEEAIDYLKTLQFQVMMMSMGTG 132 (268)
Q Consensus 84 R~~In~~~~~L~~LVP~~~------K~dKasIL~~AI~YIk~Lq~qv~~L~~~~~ 132 (268)
-|.|++.+..|+.|+|... |.+-+-||++|+.||+.|+++|..|+++..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs 73 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999743 778899999999999999999999997654
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.96 E-value=9.5e-06 Score=80.16 Aligned_cols=59 Identities=24% Similarity=0.254 Sum_probs=49.7
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCCC----CchhhHHHHHHHHHHHHHHHHHhh
Q 038097 69 KKRTPEVHKRYERKRRDKINKKMRALQELIPNCNK----VDKASMLEEAIDYLKTLQFQVMMM 127 (268)
Q Consensus 69 r~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~K----~dKasIL~~AI~YIk~Lq~qv~~L 127 (268)
.+.+|...|.+||.|-..||+.|++|.++.-..-| ..|..||..||..|-.|++||.+-
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 34456778999999999999999999998765443 369999999999999999999753
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.43 E-value=0.0016 Score=55.84 Aligned_cols=53 Identities=26% Similarity=0.381 Sum_probs=48.1
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCCC--CCchhhHHHHHHHHHHHHHHHH
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNCN--KVDKASMLEEAIDYLKTLQFQV 124 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~--K~dKasIL~~AI~YIk~Lq~qv 124 (268)
.+.-||+.||+|-..+|+.|..||.++|... |++|.-.|+-|..||-+|-+-.
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 4678999999999999999999999999875 9999999999999999986533
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.74 E-value=0.019 Score=52.92 Aligned_cols=52 Identities=29% Similarity=0.381 Sum_probs=45.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHH
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC---NKVDKASMLEEAIDYLKTLQFQ 123 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~---~K~dKasIL~~AI~YIk~Lq~q 123 (268)
+|..=|..||+|--.+|+.|+.||++||.. .|+.|..+|..|-.||..|++-
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 455668899999999999999999999943 3999999999999999999763
No 17
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=95.45 E-value=0.0038 Score=64.30 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=66.7
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC-----CCchhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCCCCccc
Q 038097 71 RTPEVHKRYERKRRDKINKKMRALQELIPNCN-----KVDKASMLEEAIDYLKTLQFQVMMMSMGTGVCMPSMMLPTGII 145 (268)
Q Consensus 71 ~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~-----K~dKasIL~~AI~YIk~Lq~qv~~L~~~~~~~~p~~~l~~~i~ 145 (268)
.+...|..+|++||.+|+-+|..|.+++.+.. |+.++.-|+.++.||-.++.+...+.++.. .|..+|.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~------~lr~~~s 723 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAH------SLRKEIS 723 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhh------hhhhhhH
Confidence 35677999999999999999999999998865 778888999999999999998888876643 5667777
Q ss_pred chhhhhhhcCCCCC
Q 038097 146 GMQQMHAVAPQMSH 159 (268)
Q Consensus 146 ~l~~~~~~a~~~~~ 159 (268)
+++.++. +|...
T Consensus 724 ~~~A~~~--~~~q~ 735 (856)
T KOG3582|consen 724 ELNAVIS--ACQQP 735 (856)
T ss_pred HHHHHHH--HhhcC
Confidence 8887775 44443
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=94.94 E-value=0.28 Score=51.81 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 038097 112 EAIDYLKTL 120 (268)
Q Consensus 112 ~AI~YIk~L 120 (268)
+|++|=|.+
T Consensus 475 kA~e~~kk~ 483 (1102)
T KOG1924|consen 475 KAAELEKKF 483 (1102)
T ss_pred HHHHHHHHH
Confidence 555555444
No 19
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=93.69 E-value=0.094 Score=48.55 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=48.5
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC---CCchhhHHHHHHHHHHHHHHHHH
Q 038097 70 KRTPEVHKRYERKRRDKINKKMRALQELIPNCN---KVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 70 ~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~---K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
+++|..-|..||+|-..+|..|+.|+..||... |++|-..|+.|-.||--|-..++
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 345566789999999999999999999999875 89999999999999998865543
No 20
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.53 E-value=0.067 Score=54.25 Aligned_cols=38 Identities=34% Similarity=0.670 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHH
Q 038097 81 RKRRDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLK 118 (268)
Q Consensus 81 RrRR~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk 118 (268)
||-|||+|.-++.|..|+|--. |+||.+||.-+|-|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 6889999999999999999764 9999999999999976
No 21
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=91.93 E-value=1.1 Score=47.67 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=7.5
Q ss_pred CchhhHHHHHHHH
Q 038097 104 VDKASMLEEAIDY 116 (268)
Q Consensus 104 ~dKasIL~~AI~Y 116 (268)
+|-+.+++.-||-
T Consensus 454 id~~~liD~~vdk 466 (1102)
T KOG1924|consen 454 IDLTELIDKMVDK 466 (1102)
T ss_pred CcHHHHHHHHHHH
Confidence 3555666666654
No 22
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=90.03 E-value=0.25 Score=51.36 Aligned_cols=43 Identities=35% Similarity=0.547 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHH
Q 038097 77 KRYERKRRDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKT 119 (268)
Q Consensus 77 ~~~ERrRR~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~ 119 (268)
.-+.|-||-+-|+-|.+|..+||--. -+|||+|+.-||-|++-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 34668899999999999999999432 78999999999999874
No 23
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.94 E-value=0.43 Score=47.18 Aligned_cols=42 Identities=36% Similarity=0.533 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHH
Q 038097 79 YERKRRDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTL 120 (268)
Q Consensus 79 ~ERrRR~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~L 120 (268)
..|.||++-|--|-+|..++|-.. .+||++|+.-|..|||--
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 458899999999999999999764 689999999999999854
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=56.41 E-value=7.4 Score=33.78 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCC--CCchhhHHHHHHHHHHHHHHHHH
Q 038097 79 YERKRRDKINKKMRALQELIPNCN--KVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 79 ~ERrRR~~In~~~~~L~~LVP~~~--K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
.|+.|..++++.+.-|+.|+|+.. +..+--.|..+-+||.+|.+-.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~ 77 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQK 77 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHH
Confidence 578888899999999999999875 44444447777778777754433
No 25
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=50.69 E-value=43 Score=31.33 Aligned_cols=14 Identities=0% Similarity=0.166 Sum_probs=7.8
Q ss_pred HHHHHHHhhCCCCC
Q 038097 89 KKMRALQELIPNCN 102 (268)
Q Consensus 89 ~~~~~L~~LVP~~~ 102 (268)
|.|+.+-..|++..
T Consensus 60 etid~ip~av~gr~ 73 (341)
T KOG2893|consen 60 ETIDKIPAAVHGRD 73 (341)
T ss_pred hhhhcccccccCCc
Confidence 45555555666544
No 26
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=44.46 E-value=6.6 Score=41.36 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=47.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCCC-----CCchhhHHHHHHHHHHHHHHHHHhhhcC
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNCN-----KVDKASMLEEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~-----K~dKasIL~~AI~YIk~Lq~qv~~L~~~ 130 (268)
.+..|.-.+||||-.+.++|..|-.|.|..- ++++++||. |.|+.+++.-+.+.++
T Consensus 787 v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 787 VSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred eecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 4567888999999999999999999998643 679999999 8999999888777654
No 27
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=42.63 E-value=99 Score=32.01 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhh
Q 038097 105 DKASMLEEAIDYLKTLQFQVMMMS 128 (268)
Q Consensus 105 dKasIL~~AI~YIk~Lq~qv~~L~ 128 (268)
.|+..|++..+-=...|.....++
T Consensus 157 ~k~~F~~~~~~AE~~~~~A~~~~~ 180 (817)
T KOG1925|consen 157 YKARFLENVAAAETEKQVALAQGR 180 (817)
T ss_pred HHhHHHhhhHHHHHHHHHHHHhcc
Confidence 345555554444333444444444
No 28
>PHA03308 transcriptional regulator ICP4; Provisional
Probab=39.67 E-value=38 Score=36.36 Aligned_cols=10 Identities=50% Similarity=0.531 Sum_probs=4.3
Q ss_pred cccCCCCCCC
Q 038097 11 VPSSSLCSLG 20 (268)
Q Consensus 11 ~~SSS~~s~~ 20 (268)
+.|||.|+++
T Consensus 1256 sssssscsss 1265 (1463)
T PHA03308 1256 SSSSSSCSSS 1265 (1463)
T ss_pred cccccccccc
Confidence 3344444444
No 29
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.96 E-value=1.6e+02 Score=26.97 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhcC
Q 038097 111 EEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 111 ~~AI~YIk~Lq~qv~~L~~~ 130 (268)
+++-..||.||.+++.|+.+
T Consensus 58 k~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 58 KKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34445688888888888765
No 30
>PF15392 Joubert: Joubert syndrome-associated
Probab=32.68 E-value=89 Score=30.12 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=34.9
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHhhC-----CCCCCCchhhHHHHHHHHHHHHHHH
Q 038097 69 KKRTPEVHKRYERKRRDKINKKMRALQELI-----PNCNKVDKASMLEEAIDYLKTLQFQ 123 (268)
Q Consensus 69 r~~~r~~H~~~ERrRR~~In~~~~~L~~LV-----P~~~K~dKasIL~~AI~YIk~Lq~q 123 (268)
.+.+++...++.||||++|-+.+..|.++. |.|.+.+-..+-.+-|.-.+.++.+
T Consensus 53 ekERrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~E 112 (329)
T PF15392_consen 53 EKERREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEE 112 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 334578889999999999999998887765 4444433333334444444444333
No 31
>PTZ00405 cytochrome c; Provisional
Probab=30.36 E-value=89 Score=25.29 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHH
Q 038097 84 RDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTLQ 121 (268)
Q Consensus 84 R~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~Lq 121 (268)
.+.|...+..=+.++|+.. .+.+..-+..-|.||+.|+
T Consensus 72 ~~~L~~~l~~P~~~~pgt~M~f~gl~~~~dr~~liaYL~sl~ 113 (114)
T PTZ00405 72 PEVLDVYLENPKKFMPGTKMSFAGIKKPQERADVIAYLETLK 113 (114)
T ss_pred HHHHHHHHHCHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4677777888888999543 4567788888999999986
No 32
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=27.45 E-value=1.1e+02 Score=22.42 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038097 80 ERKRRDKINKKMRALQELIPNCNKVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 80 ERrRR~~In~~~~~L~~LVP~~~K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
.++=..++++++..|..++ .....++|..+-.=..|+..|+..++
T Consensus 33 ~~~~~~~~~~~~~~l~~~f-~~~d~~~A~~~~~kLky~~kl~~~ik 77 (78)
T PF07743_consen 33 KKEIEERIKELIKELAEAF-DAKDWEEAKEALRKLKYLQKLLEEIK 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444567788888888877 34455566655555566666666554
No 33
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=26.41 E-value=73 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.787 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 038097 81 RKRRDKINKKMRALQE 96 (268)
Q Consensus 81 RrRR~~In~~~~~L~~ 96 (268)
|+||+.++.++..|+.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788999999988875
No 34
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=25.02 E-value=2.7e+02 Score=30.28 Aligned_cols=9 Identities=11% Similarity=-0.049 Sum_probs=3.7
Q ss_pred HHHHHHhhh
Q 038097 120 LQFQVMMMS 128 (268)
Q Consensus 120 Lq~qv~~L~ 128 (268)
|....+.++
T Consensus 519 Lt~dl~~~~ 527 (894)
T KOG0132|consen 519 LTDDLEAWC 527 (894)
T ss_pred cCHHHHHhh
Confidence 334444444
No 35
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.91 E-value=1.8e+02 Score=20.84 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHHHHhhh
Q 038097 81 RKRRDKINKKMRALQELIPNCNKVDKASMLEEAIDYLKTLQFQVMMMS 128 (268)
Q Consensus 81 RrRR~~In~~~~~L~~LVP~~~K~dKasIL~~AI~YIk~Lq~qv~~L~ 128 (268)
|.-|=.++..+..+..++- ..-.++|.+||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllq-------lg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQ-------LGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888764 4456788999999988887764
No 36
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=24.75 E-value=89 Score=26.93 Aligned_cols=25 Identities=44% Similarity=0.512 Sum_probs=16.8
Q ss_pred CcchhhhHHHHHH---HHHHHHHHHHHh
Q 038097 72 TPEVHKRYERKRR---DKINKKMRALQE 96 (268)
Q Consensus 72 ~r~~H~~~ERrRR---~~In~~~~~L~~ 96 (268)
-|++-...||+|| .+|-.+++.++.
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556677999999 555555555554
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.10 E-value=74 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC
Q 038097 110 LEEAIDYLKTLQFQVMMMSMGTG 132 (268)
Q Consensus 110 L~~AI~YIk~Lq~qv~~L~~~~~ 132 (268)
++.|||-|.-||-++.+|.+++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57799999999999999988764
No 38
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=24.07 E-value=1.1e+02 Score=29.17 Aligned_cols=21 Identities=52% Similarity=0.706 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 038097 105 DKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 105 dKasIL~~AI~YIk~Lq~qv~ 125 (268)
+.|+-|++=|+|+|.|=.++.
T Consensus 269 ~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 269 DQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998866553
No 39
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=23.39 E-value=60 Score=27.87 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHH
Q 038097 86 KINKKMRALQELIPNCNKVDKASMLEEAIDYLKTL 120 (268)
Q Consensus 86 ~In~~~~~L~~LVP~~~K~dKasIL~~AI~YIk~L 120 (268)
-|-++|.+|+++||...+..-..+...++.++|.+
T Consensus 50 Tl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 50 TFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred cHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46677999999999876554555555555555554
No 40
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=22.52 E-value=44 Score=30.95 Aligned_cols=42 Identities=26% Similarity=0.487 Sum_probs=23.2
Q ss_pred CCCCCchhhhhhhhhccccCCCCCCcccCCcchhhhHHHHHH
Q 038097 43 SACPCDQYEKKLERKAVTVRGSKSNRKKRTPEVHKRYERKRR 84 (268)
Q Consensus 43 s~~~s~~~~~e~~~~~~~~~~~~~~kr~~~r~~H~~~ERrRR 84 (268)
+++.+|++++++-+.....|.....++.++-..|+..|+.|-
T Consensus 252 sesesd~d~dednk~~~rkrk~~~a~ksrkp~i~ieyeqe~e 293 (303)
T COG5129 252 SESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERE 293 (303)
T ss_pred cccccccccccccccchhhcccCchhhccCCceeeehHhhhh
Confidence 334444444444333344444455566666667888887664
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.64 E-value=3.9e+02 Score=29.31 Aligned_cols=11 Identities=0% Similarity=-0.037 Sum_probs=5.4
Q ss_pred CCCcCcccccc
Q 038097 245 PGDSNQNVEIN 255 (268)
Q Consensus 245 ~~~~~~~~~~~ 255 (268)
+....-||-+.
T Consensus 180 s~~q~~eWAVp 190 (1118)
T KOG1029|consen 180 SVNQLEEWAVP 190 (1118)
T ss_pred hhhhhhhcccc
Confidence 33344466555
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.91 E-value=1.6e+02 Score=27.49 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=11.4
Q ss_pred cccCCcchhh-hHHHHHHHHHHHHH
Q 038097 68 RKKRTPEVHK-RYERKRRDKINKKM 91 (268)
Q Consensus 68 kr~~~r~~H~-~~ERrRR~~In~~~ 91 (268)
+++++|..|. .-||--|.+++.+.
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRV 79 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRV 79 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHH
Confidence 3444455563 34444455555444
Done!