Query 038097
Match_columns 268
No_of_seqs 251 out of 1255
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:40:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.8E-17 6.3E-22 126.4 4.5 61 71-131 5-66 (82)
2 4h10_B Circadian locomoter out 99.7 1E-16 3.5E-21 119.4 6.4 60 69-128 5-65 (71)
3 1a0a_A BHLH, protein (phosphat 99.6 4.3E-17 1.5E-21 118.8 3.3 54 72-125 2-62 (63)
4 1an4_A Protein (upstream stimu 99.6 4.8E-17 1.7E-21 118.5 3.0 56 70-125 3-64 (65)
5 4ati_A MITF, microphthalmia-as 99.6 3.4E-16 1.2E-20 127.0 7.3 64 67-130 22-89 (118)
6 4h10_A ARYL hydrocarbon recept 99.6 1.3E-16 4.5E-21 119.4 2.8 55 68-122 5-63 (73)
7 1hlo_A Protein (transcription 99.6 2.2E-15 7.6E-20 114.1 6.1 59 72-130 12-72 (80)
8 1nkp_B MAX protein, MYC proto- 99.6 2.5E-15 8.6E-20 114.3 6.1 59 72-130 2-62 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 5.3E-15 1.8E-19 114.3 6.1 58 72-129 6-66 (88)
10 3u5v_A Protein MAX, transcript 99.5 4.7E-15 1.6E-19 111.8 5.2 58 72-129 5-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.5 4.7E-14 1.6E-18 107.2 7.4 58 73-130 2-62 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.3 1.1E-12 3.8E-17 96.8 5.1 54 72-125 12-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 2.5E-12 8.5E-17 92.7 6.1 53 73-125 3-58 (60)
14 4f3l_A Mclock, circadian locom 99.3 5.6E-12 1.9E-16 117.4 7.0 84 68-154 8-94 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.2 1.1E-11 3.9E-16 116.8 5.0 83 68-155 9-95 (387)
16 2lfh_A DNA-binding protein inh 99.0 1.9E-10 6.6E-15 84.6 2.3 46 77-122 19-67 (68)
17 4ath_A MITF, microphthalmia-as 98.9 9.9E-10 3.4E-14 83.8 5.8 46 84-129 4-53 (83)
18 4aya_A DNA-binding protein inh 98.5 2E-07 6.7E-12 73.1 7.5 50 80-129 33-85 (97)
19 3muj_A Transcription factor CO 72.0 5.5 0.00019 32.7 5.0 36 85-120 94-133 (138)
20 1pd7_B MAD1; PAH2, SIN3, eukar 47.5 22 0.00075 21.0 3.2 21 103-123 1-21 (26)
21 2wt7_A Proto-oncogene protein 31.1 60 0.0021 22.4 4.1 13 116-128 24-36 (63)
22 1xkm_B Distinctin chain B; por 29.4 63 0.0021 18.6 3.1 20 107-126 3-22 (26)
23 1m2x_A Class B carbapenemase B 29.1 59 0.002 26.5 4.4 29 97-125 192-220 (223)
24 1p3q_Q VPS9P, vacuolar protein 21.4 93 0.0032 21.3 3.4 25 78-102 3-27 (54)
25 3fx7_A Putative uncharacterize 20.8 1.7E+02 0.0059 22.2 5.2 21 110-130 65-85 (94)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.68 E-value=1.8e-17 Score=126.39 Aligned_cols=61 Identities=28% Similarity=0.482 Sum_probs=57.0
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHHHHHHHhhhcCC
Q 038097 71 RTPEVHKRYERKRRDKINKKMRALQELIPNC-NKVDKASMLEEAIDYLKTLQFQVMMMSMGT 131 (268)
Q Consensus 71 ~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~-~K~dKasIL~~AI~YIk~Lq~qv~~L~~~~ 131 (268)
.++..|+.+||+||++||++|.+|+.|||++ .|+||++||++||+||++||.+++.|+.++
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999998 699999999999999999999999998654
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=119.40 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=54.2
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHHHHHHHhhh
Q 038097 69 KKRTPEVHKRYERKRRDKINKKMRALQELIPNC-NKVDKASMLEEAIDYLKTLQFQVMMMS 128 (268)
Q Consensus 69 r~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~-~K~dKasIL~~AI~YIk~Lq~qv~~L~ 128 (268)
...+|..|+.+||+||++||++|.+|+.|||.. .|+||++||++||+||+.||.++.-|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344578999999999999999999999999975 499999999999999999999987664
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.65 E-value=4.3e-17 Score=118.79 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=48.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC-------CCCchhhHHHHHHHHHHHHHHHHH
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC-------NKVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~-------~K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
+|.+|+.+||+||++||.+|.+|+.|||.+ .|++||+||++||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999999999999976 377899999999999999998753
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=4.8e-17 Score=118.53 Aligned_cols=56 Identities=32% Similarity=0.542 Sum_probs=51.0
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC------CCchhhHHHHHHHHHHHHHHHHH
Q 038097 70 KRTPEVHKRYERKRRDKINKKMRALQELIPNCN------KVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 70 ~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~------K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
..++..|+.+||+||++||++|.+|+.|||.+. |++|++||++||+||++||++++
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 345778999999999999999999999999986 78999999999999999998753
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.63 E-value=3.4e-16 Score=127.04 Aligned_cols=64 Identities=28% Similarity=0.513 Sum_probs=51.6
Q ss_pred CcccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHhhhcC
Q 038097 67 NRKKRTPEVHKRYERKRRDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 67 ~kr~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~Lq~qv~~L~~~ 130 (268)
.++.+++..|+.+||+||++||++|.+|+.|||.+. |++|++||++||+||++||.+++.|...
T Consensus 22 ~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 22 AKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556789999999999999999999999999985 7889999999999999999999999754
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=119.43 Aligned_cols=55 Identities=40% Similarity=0.662 Sum_probs=50.7
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHHHH
Q 038097 68 RKKRTPEVHKRYERKRRDKINKKMRALQELIPNC----NKVDKASMLEEAIDYLKTLQF 122 (268)
Q Consensus 68 kr~~~r~~H~~~ERrRR~~In~~~~~L~~LVP~~----~K~dKasIL~~AI~YIk~Lq~ 122 (268)
+..+++..|+.+||+||++||++|.+|+.|||.| .|+|||+||+.||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4556788999999999999999999999999987 599999999999999999975
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.57 E-value=2.2e-15 Score=114.05 Aligned_cols=59 Identities=25% Similarity=0.487 Sum_probs=55.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHhhhcC
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC--NKVDKASMLEEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~--~K~dKasIL~~AI~YIk~Lq~qv~~L~~~ 130 (268)
+|..|+.+||+||+.||++|..|+.+||.+ .|++|++||..||+||+.|+.+++.|..+
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e 72 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999987 49999999999999999999999999864
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.57 E-value=2.5e-15 Score=114.35 Aligned_cols=59 Identities=25% Similarity=0.487 Sum_probs=54.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHhhhcC
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC--NKVDKASMLEEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~--~K~dKasIL~~AI~YIk~Lq~qv~~L~~~ 130 (268)
+|..|+..||+||+.||++|.+|+++||.+ .|++|++||.+||+||+.|+.+++.|+.+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e 62 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQD 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999986 59999999999999999999999888754
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=5.3e-15 Score=114.27 Aligned_cols=58 Identities=26% Similarity=0.445 Sum_probs=53.6
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC---NKVDKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~---~K~dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
+|..||..||+||+.||++|..|+.+||.+ .|++|++||.+||+||++|+.+++.+..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~ 66 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLIS 66 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999986 4999999999999999999999888764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.54 E-value=4.7e-15 Score=111.78 Aligned_cols=58 Identities=29% Similarity=0.395 Sum_probs=50.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC---CCC-chhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC---NKV-DKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~---~K~-dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
+|..||..||+||+.||++|.+|+.+||.+ .|. +|++||.+||+||++||+++++++.
T Consensus 5 rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 5 KRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999953 365 7999999999999999999999874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=4.7e-14 Score=107.22 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=53.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHhhhcC
Q 038097 73 PEVHKRYERKRRDKINKKMRALQELIPNC---NKVDKASMLEEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 73 r~~H~~~ERrRR~~In~~~~~L~~LVP~~---~K~dKasIL~~AI~YIk~Lq~qv~~L~~~ 130 (268)
|..||..||+||+.||++|.+|+++||.+ .|.+|++||.+|++||+.|+.+.+.|..+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999976 48999999999999999999999888754
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.32 E-value=1.1e-12 Score=96.80 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=49.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHH
Q 038097 72 TPEVHKRYERKRRDKINKKMRALQELIPNC--NKVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 72 ~r~~H~~~ERrRR~~In~~~~~L~~LVP~~--~K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
+|..||..||+|+..||+.|..|+++||.. .|++|+.||..||+||.+|++.++
T Consensus 12 rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 12 RRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999975 499999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.31 E-value=2.5e-12 Score=92.72 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=48.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHhhCCCCC---CCchhhHHHHHHHHHHHHHHHHH
Q 038097 73 PEVHKRYERKRRDKINKKMRALQELIPNCN---KVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 73 r~~H~~~ERrRR~~In~~~~~L~~LVP~~~---K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
|..||..||+|+..||++|..|+.+||... |++|+.||..||+||..|++.++
T Consensus 3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999999999764 99999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.26 E-value=5.6e-12 Score=117.45 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=57.0
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHhhCC-CCCCCchhhHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCcCCCCcc
Q 038097 68 RKKRTPEVHKRYERKRRDKINKKMRALQELIP-NCNKVDKASMLEEAIDYLKTLQFQVMMMS--MGTGVCMPSMMLPTGI 144 (268)
Q Consensus 68 kr~~~r~~H~~~ERrRR~~In~~~~~L~~LVP-~~~K~dKasIL~~AI~YIk~Lq~qv~~L~--~~~~~~~p~~~l~~~i 144 (268)
+...+|..|+.+||+||++||+.|.+|+.||| ...|+||++||+.||+|||.|+....... .....+.|.++...
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 85 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNE-- 85 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHH--
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHH--
Confidence 34456778999999999999999999999999 55699999999999999999987643221 11235667666554
Q ss_pred cchhhhhhhc
Q 038097 145 IGMQQMHAVA 154 (268)
Q Consensus 145 ~~l~~~~~~a 154 (268)
++.+++.++
T Consensus 86 -~~~~~~l~a 94 (361)
T 4f3l_A 86 -EFTQLMLEA 94 (361)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHh
Confidence 667666554
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.18 E-value=1.1e-11 Score=116.80 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=62.5
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHhhCC----CCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCCCCc
Q 038097 68 RKKRTPEVHKRYERKRRDKINKKMRALQELIP----NCNKVDKASMLEEAIDYLKTLQFQVMMMSMGTGVCMPSMMLPTG 143 (268)
Q Consensus 68 kr~~~r~~H~~~ERrRR~~In~~~~~L~~LVP----~~~K~dKasIL~~AI~YIk~Lq~qv~~L~~~~~~~~p~~~l~~~ 143 (268)
|...+|.+|+.+||+||++||+.|.+|+.||| ...|+||++||+.||+|||.|+....... ...+.|.++...
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~- 85 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGATNPYT--EANYKPTFLSDD- 85 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC--------CCSSCTTSCHH-
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccccccc--ccccCcccCCHH-
Confidence 33455789999999999999999999999999 45699999999999999999985433222 234567766555
Q ss_pred ccchhhhhhhcC
Q 038097 144 IIGMQQMHAVAP 155 (268)
Q Consensus 144 i~~l~~~~~~a~ 155 (268)
+|.+++.++.
T Consensus 86 --~~~~~ll~~~ 95 (387)
T 4f3l_B 86 --ELKHLILRAA 95 (387)
T ss_dssp --HHHHHHHHTC
T ss_pred --HHHHHHHhcC
Confidence 7777776654
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=84.61 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHH
Q 038097 77 KRYERKRRDKINKKMRALQELIPNC---NKVDKASMLEEAIDYLKTLQF 122 (268)
Q Consensus 77 ~~~ERrRR~~In~~~~~L~~LVP~~---~K~dKasIL~~AI~YIk~Lq~ 122 (268)
+..||+|+..||++|..||++||.. .|++|..||+.||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4568899999999999999999976 499999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.94 E-value=9.9e-10 Score=83.76 Aligned_cols=46 Identities=30% Similarity=0.546 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 84 RDKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 84 R~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
|+.||++|.+|+.|||.+. |.+|++||.+|||||++||++++.+.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999864 889999999999999999988877664
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.54 E-value=2e-07 Score=73.06 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHhhhc
Q 038097 80 ERKRRDKINKKMRALQELIPNC---NKVDKASMLEEAIDYLKTLQFQVMMMSM 129 (268)
Q Consensus 80 ERrRR~~In~~~~~L~~LVP~~---~K~dKasIL~~AI~YIk~Lq~qv~~L~~ 129 (268)
|+.|-..||++|..|+.+||.. .|++|..+|..||+||+.|+..++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4677789999999999999975 3999999999999999999998876554
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=72.01 E-value=5.5 Score=32.67 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHH
Q 038097 85 DKINKKMRALQELIPNCN----KVDKASMLEEAIDYLKTL 120 (268)
Q Consensus 85 ~~In~~~~~L~~LVP~~~----K~dKasIL~~AI~YIk~L 120 (268)
-.|.=+|..|+++||... ++-|-.||++|.|+++.|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 458889999999999764 889999999999999877
No 20
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=47.46 E-value=22 Score=21.03 Aligned_cols=21 Identities=33% Similarity=0.314 Sum_probs=16.8
Q ss_pred CCchhhHHHHHHHHHHHHHHH
Q 038097 103 KVDKASMLEEAIDYLKTLQFQ 123 (268)
Q Consensus 103 K~dKasIL~~AI~YIk~Lq~q 123 (268)
|+.+..+|-+|.+||....++
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 356788999999999987663
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.09 E-value=60 Score=22.40 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhhh
Q 038097 116 YLKTLQFQVMMMS 128 (268)
Q Consensus 116 YIk~Lq~qv~~L~ 128 (268)
||..|+.++..|+
T Consensus 24 ~~~~Le~~v~~L~ 36 (63)
T 2wt7_A 24 LTDTLQAETDQLE 36 (63)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 22
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=29.37 E-value=63 Score=18.63 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 038097 107 ASMLEEAIDYLKTLQFQVMM 126 (268)
Q Consensus 107 asIL~~AI~YIk~Lq~qv~~ 126 (268)
.+-|-+|-.|+.+|+++++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45678899999999988764
No 23
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=29.10 E-value=59 Score=26.52 Aligned_cols=29 Identities=7% Similarity=0.218 Sum_probs=20.3
Q ss_pred hCCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038097 97 LIPNCNKVDKASMLEEAIDYLKTLQFQVM 125 (268)
Q Consensus 97 LVP~~~K~dKasIL~~AI~YIk~Lq~qv~ 125 (268)
++|.....-....|+.+++|++.++++++
T Consensus 192 i~pgHg~~~~~~~l~~~~~~l~~~~~~~~ 220 (223)
T 1m2x_A 192 VVAGHDDWKDQRSIQHTLDLINEYQQKQK 220 (223)
T ss_dssp EEESBSCCCSTTHHHHHHHHHHHHHHTC-
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 44544433245789999999999998874
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=21.40 E-value=93 Score=21.30 Aligned_cols=25 Identities=12% Similarity=0.379 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC
Q 038097 78 RYERKRRDKINKKMRALQELIPNCN 102 (268)
Q Consensus 78 ~~ERrRR~~In~~~~~L~~LVP~~~ 102 (268)
.++|-+|...++.+.+|+.+.|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 3567788889999999999999865
No 25
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=20.79 E-value=1.7e+02 Score=22.18 Aligned_cols=21 Identities=14% Similarity=0.117 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcC
Q 038097 110 LEEAIDYLKTLQFQVMMMSMG 130 (268)
Q Consensus 110 L~~AI~YIk~Lq~qv~~L~~~ 130 (268)
.+.|=+||.+|+++++.|+..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHH
Confidence 346778999999999998863
Done!