Query 038099
Match_columns 250
No_of_seqs 145 out of 741
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:34:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2.3E-74 4.9E-79 532.6 8.7 215 27-250 1-216 (310)
2 COG5309 Exo-beta-1,3-glucanase 98.1 3.2E-05 6.9E-10 71.3 11.5 133 25-167 44-185 (305)
3 PF03198 Glyco_hydro_72: Gluca 96.2 0.011 2.3E-07 55.7 6.5 127 27-157 30-180 (314)
4 PF00925 GTP_cyclohydro2: GTP 86.8 0.65 1.4E-05 39.7 3.2 39 43-82 130-168 (169)
5 PF00150 Cellulase: Cellulase 82.3 7.6 0.00017 33.9 8.0 117 40-158 22-172 (281)
6 TIGR00505 ribA GTP cyclohydrol 78.3 2.6 5.6E-05 36.7 3.6 36 45-81 131-166 (191)
7 PRK00393 ribA GTP cyclohydrola 78.2 2.6 5.6E-05 37.0 3.6 36 45-81 134-169 (197)
8 smart00481 POLIIIAc DNA polyme 77.9 5.5 0.00012 28.1 4.7 41 40-81 16-61 (67)
9 cd00641 GTP_cyclohydro2 GTP cy 72.7 4.3 9.4E-05 35.3 3.6 36 45-81 133-168 (193)
10 PRK12485 bifunctional 3,4-dihy 71.3 4.9 0.00011 38.9 3.9 35 44-80 330-364 (369)
11 PRK09314 bifunctional 3,4-dihy 68.2 5.9 0.00013 37.9 3.7 34 44-78 300-334 (339)
12 PRK14019 bifunctional 3,4-dihy 65.5 7.5 0.00016 37.5 3.9 36 45-82 328-363 (367)
13 PRK05723 flavodoxin; Provision 65.0 63 0.0014 26.9 8.9 114 26-153 2-119 (151)
14 PF13756 Stimulus_sens_1: Stim 61.7 5.4 0.00012 31.9 1.8 27 40-67 2-31 (112)
15 PRK09311 bifunctional 3,4-dihy 61.4 12 0.00025 36.6 4.4 38 44-82 338-375 (402)
16 PRK09319 bifunctional 3,4-dihy 61.4 11 0.00024 38.4 4.3 38 44-82 342-379 (555)
17 PF02836 Glyco_hydro_2_C: Glyc 61.2 20 0.00043 32.6 5.7 94 27-123 18-132 (298)
18 PRK09004 FMN-binding protein M 59.9 78 0.0017 26.1 8.6 110 26-153 3-116 (146)
19 PRK08815 GTP cyclohydrolase; P 59.9 12 0.00026 36.3 4.1 37 45-82 305-341 (375)
20 PF07745 Glyco_hydro_53: Glyco 59.7 91 0.002 29.7 10.0 168 28-207 16-242 (332)
21 PRK09318 bifunctional 3,4-dihy 59.3 12 0.00027 36.4 4.1 38 44-82 319-356 (387)
22 PLN02831 Bifunctional GTP cycl 59.0 13 0.00028 37.0 4.2 38 44-82 372-409 (450)
23 PRK07198 hypothetical protein; 58.9 6.8 0.00015 38.5 2.2 38 44-82 337-375 (418)
24 PRK10150 beta-D-glucuronidase; 52.5 1.1E+02 0.0023 31.0 9.7 79 44-124 318-419 (604)
25 COG0807 RibA GTP cyclohydrolas 51.0 22 0.00049 31.5 4.0 39 45-84 133-171 (193)
26 PF13721 SecD-TM1: SecD export 49.2 31 0.00068 27.1 4.2 38 22-60 29-66 (101)
27 KOG1462 Translation initiation 48.4 60 0.0013 32.1 6.8 110 66-214 46-157 (433)
28 PF00332 Glyco_hydro_17: Glyco 48.0 36 0.00078 31.9 5.2 60 133-200 206-268 (310)
29 cd06156 eu_AANH_C_2 A group of 47.3 19 0.00041 28.8 2.8 29 130-158 30-59 (118)
30 TIGR03628 arch_S11P archaeal r 47.3 25 0.00055 28.6 3.5 38 41-79 52-102 (114)
31 cd02875 GH18_chitobiase Chitob 46.5 58 0.0013 30.9 6.4 100 52-159 54-159 (358)
32 TIGR03632 bact_S11 30S ribosom 44.9 40 0.00086 26.9 4.3 36 42-78 50-90 (108)
33 cd04743 NPD_PKS 2-Nitropropane 44.9 1.3E+02 0.0028 28.6 8.4 79 25-123 56-134 (320)
34 PTZ00129 40S ribosomal protein 41.9 40 0.00088 28.8 4.1 38 41-79 78-128 (149)
35 PF07799 DUF1643: Protein of u 41.4 30 0.00064 28.0 3.1 42 169-215 21-64 (136)
36 TIGR00559 pdxJ pyridoxine 5'-p 41.3 32 0.0007 31.5 3.6 34 41-76 112-146 (237)
37 COG2896 MoaA Molybdenum cofact 40.2 2.1E+02 0.0045 27.4 9.0 132 37-199 41-183 (322)
38 cd00003 PNPsynthase Pyridoxine 40.1 34 0.00075 31.2 3.6 35 40-76 111-146 (234)
39 PF06722 DUF1205: Protein of u 39.7 23 0.00049 27.8 2.1 27 64-90 64-90 (97)
40 PRK05265 pyridoxine 5'-phospha 37.5 40 0.00087 30.9 3.6 33 41-75 115-148 (239)
41 cd06150 YjgF_YER057c_UK114_lik 36.8 49 0.0011 25.5 3.6 30 129-158 25-57 (105)
42 PRK05718 keto-hydroxyglutarate 34.9 1.2E+02 0.0025 27.1 6.1 54 40-104 117-176 (212)
43 CHL00041 rps11 ribosomal prote 33.4 76 0.0016 25.6 4.3 36 42-78 63-103 (116)
44 PRK09492 treR trehalose repres 33.3 1.9E+02 0.0042 25.5 7.4 95 36-158 158-263 (315)
45 PF03740 PdxJ: Pyridoxal phosp 33.2 46 0.00099 30.5 3.3 36 39-76 111-147 (239)
46 COG1433 Uncharacterized conser 32.9 77 0.0017 26.0 4.3 47 35-82 46-94 (121)
47 COG0117 RibD Pyrimidine deamin 32.3 68 0.0015 27.3 3.9 41 49-89 91-137 (146)
48 PRK05309 30S ribosomal protein 32.2 80 0.0017 26.0 4.3 36 42-78 67-107 (128)
49 cd02199 YjgF_YER057c_UK114_lik 31.1 45 0.00098 27.5 2.7 26 133-158 56-87 (142)
50 cd01543 PBP1_XylR Ligand-bindi 31.0 2E+02 0.0044 24.6 6.9 100 36-158 92-205 (265)
51 PF02579 Nitro_FeMo-Co: Dinitr 30.3 75 0.0016 23.2 3.5 47 40-88 41-87 (94)
52 COG4086 Predicted secreted pro 30.0 1.4E+02 0.003 28.2 5.9 101 34-162 41-143 (299)
53 PTZ00090 40S ribosomal protein 29.8 72 0.0016 29.1 3.9 37 43-80 171-211 (233)
54 PRK09607 rps11p 30S ribosomal 29.3 72 0.0016 26.7 3.6 37 41-78 59-108 (132)
55 PF00411 Ribosomal_S11: Riboso 29.0 70 0.0015 25.4 3.4 36 42-78 50-90 (110)
56 PF13377 Peripla_BP_3: Peripla 28.7 53 0.0012 25.8 2.7 123 45-193 1-139 (160)
57 PRK09989 hypothetical protein; 27.6 1E+02 0.0022 27.2 4.5 53 26-80 3-59 (258)
58 cd06152 YjgF_YER057c_UK114_lik 27.0 44 0.00094 26.5 1.8 29 130-158 31-63 (114)
59 PF01042 Ribonuc_L-PSP: Endori 26.4 50 0.0011 26.0 2.1 29 130-158 40-71 (121)
60 cd06151 YjgF_YER057c_UK114_lik 26.3 41 0.00089 26.9 1.6 29 130-158 38-69 (126)
61 PRK14328 (dimethylallyl)adenos 26.2 1.4E+02 0.0031 28.9 5.6 118 27-157 199-334 (439)
62 PRK03562 glutathione-regulated 26.2 76 0.0016 32.5 3.8 117 27-152 404-537 (621)
63 smart00851 MGS MGS-like domain 25.7 93 0.002 23.1 3.4 40 43-83 21-64 (90)
64 PRK14338 (dimethylallyl)adenos 25.6 1.9E+02 0.0042 28.3 6.4 118 27-157 207-342 (459)
65 PF07985 SRR1: SRR1; InterPro 25.3 1E+02 0.0022 21.6 3.2 34 29-62 3-42 (56)
66 COG0854 PdxJ Pyridoxal phospha 25.1 87 0.0019 28.7 3.5 37 38-76 110-147 (243)
67 cd00851 MTH1175 This uncharact 24.8 1.2E+02 0.0026 22.5 3.9 45 41-87 52-96 (103)
68 PF00135 COesterase: Carboxyle 24.7 30 0.00066 33.1 0.6 21 89-109 184-204 (535)
69 cd01422 MGS Methylglyoxal synt 23.8 1E+02 0.0022 24.5 3.4 42 41-83 33-79 (115)
70 PRK08105 flavodoxin; Provision 23.7 4E+02 0.0087 21.9 7.1 111 26-153 3-118 (149)
71 PF10671 TcpQ: Toxin co-regula 23.5 77 0.0017 23.7 2.6 58 141-205 11-71 (84)
72 cd06153 YjgF_YER057c_UK114_lik 23.4 74 0.0016 25.2 2.5 29 130-158 33-69 (114)
73 cd01424 MGS_CPS_II Methylglyox 23.3 1.1E+02 0.0024 23.5 3.5 46 37-83 28-76 (110)
74 COG4822 CbiK Cobalamin biosynt 23.0 1.9E+02 0.0041 26.7 5.3 46 38-102 178-223 (265)
75 PRK03659 glutathione-regulated 22.5 92 0.002 31.7 3.6 117 29-153 406-538 (601)
76 COG4669 EscJ Type III secretor 22.0 1.2E+02 0.0026 28.0 3.8 140 40-209 32-180 (246)
77 PF08443 RimK: RimK-like ATP-g 21.5 78 0.0017 26.8 2.5 55 66-125 43-103 (190)
78 cd00532 MGS-like MGS-like doma 21.2 1.9E+02 0.0042 22.5 4.5 41 42-83 32-77 (112)
79 PF02811 PHP: PHP domain; Int 21.2 1.8E+02 0.0038 23.2 4.4 44 38-82 15-63 (175)
80 cd03412 CbiK_N Anaerobic cobal 21.2 1.8E+02 0.0038 23.4 4.4 55 35-90 52-120 (127)
81 TIGR01182 eda Entner-Doudoroff 20.9 2.8E+02 0.0061 24.5 5.9 66 40-125 110-181 (204)
82 PF01081 Aldolase: KDPG and KH 20.7 2.4E+02 0.0052 24.8 5.4 54 40-104 110-169 (196)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2.3e-74 Score=532.65 Aligned_cols=215 Identities=54% Similarity=0.908 Sum_probs=182.4
Q ss_pred ceeeecCCCCCCCChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcccc
Q 038099 27 VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTNVL 106 (250)
Q Consensus 27 iGVnyG~~g~nLPsp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~nV~ 106 (250)
|||||||.|||||+|.+||+| ||+++|++|||||+|+++||||+||||+|+|+|||++|++++ +++.+|..||++||.
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l-~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la-~~~~~A~~Wv~~nv~ 78 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSL-LKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLA-SSQSAAGSWVRTNVL 78 (310)
T ss_dssp EEEEE---SSS---HHHHHHH-HHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHH-HHHHHHHHHHHHHTC
T ss_pred CeEeccCccCCCCCHHHHHHH-HHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhc-cCHHHHhhhhhhccc
Confidence 799999999999999999999 999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCC-eEEcCccccccccccCCCCCcccCCcchhhhH
Q 038099 107 PYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK-IKVGTPSAMDVLQSSFPPSNGTFRSDISESVM 185 (250)
Q Consensus 107 p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~-IKVST~~s~~iL~~s~PPSag~F~~~~~~~~m 185 (250)
||+|+|||++|+||||++++... ..|||||+|+|+||+++||++ |||||+|++++|++|||||+|.|++++. ++|
T Consensus 79 ~~~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~-~~~ 154 (310)
T PF00332_consen 79 PYLPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIA-SVM 154 (310)
T ss_dssp TCTTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHH-HHH
T ss_pred ccCcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccch-hhh
Confidence 99999999999999999976432 289999999999999999997 9999999999999999999999999988 899
Q ss_pred HHHHHHHhhcCCcceeccCCCCcCCCCCCCcCcceeecccCCCceeeCCCCccccchhhhhhccC
Q 038099 186 RPMLHFLNRTKSFFFVDAYTFFPWSSDPKNIHLDYALLESTNITYTDPVTKLTYTNLFDQMLDAV 250 (250)
Q Consensus 186 ~pil~FL~~tgSPf~vNvYPyfay~~~p~~i~ldyAlF~~~~~~~~d~~~~l~YtNlfDA~~Dav 250 (250)
+|+++||++||||||+|+||||+|++||++++||||+|++ +.+++|+ +++|+||||||+||+
T Consensus 155 ~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~-~~~~~D~--~~~y~nlfDa~~da~ 216 (310)
T PF00332_consen 155 DPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQP-NSGVVDG--GLAYTNLFDAMVDAV 216 (310)
T ss_dssp HHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-S-SS-SEET--TEEESSHHHHHHHHH
T ss_pred hHHHHHhhccCCCceeccchhhhccCCcccCCcccccccc-ccccccc--chhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 6666664 899999999999985
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=3.2e-05 Score=71.25 Aligned_cols=133 Identities=19% Similarity=0.272 Sum_probs=98.0
Q ss_pred CcceeeecCCCCC--CCChhHHHH---hhhhhcCCCeEEeecCCh----hHHhhhcCCCceEEEecChhhhhhccccChH
Q 038099 25 SKVGVCYGQLGNN--LPSPQESVE---LMIKSLKATRVKIYDANP----KILKALKNIDIQVSIMVPNEIINNISLSSQT 95 (250)
Q Consensus 25 ~~iGVnyG~~g~n--LPsp~~vv~---l~lks~~i~~vriyd~d~----~vL~AlagsgI~v~v~vpN~~l~~la~~s~~ 95 (250)
+..|+|||..-++ -++.++|.. + |++.++ .||+|..|. .++.|..-+|+++.+||=-. ..+. .
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~-l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~t--dd~~----~ 115 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLEL-LASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPT--DDIH----D 115 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHH-hccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeec--cchh----h
Confidence 4579999997665 589999975 5 677776 999997554 48889999999999998421 1221 2
Q ss_pred HHHHHHhcccccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCCeEEcCccccccccc
Q 038099 96 LSDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQS 167 (250)
Q Consensus 96 ~A~~WV~~nV~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~IKVST~~s~~iL~~ 167 (250)
+.+.=...-++|+..--.++.|.||||.+-..+ -.+..|.--+..++.+|+++|.+ .+|+|.-+..++.+
T Consensus 116 ~~~~til~ay~~~~~~d~v~~v~VGnEal~r~~-~tasql~~~I~~vrsav~~agy~-gpV~T~dsw~~~~~ 185 (305)
T COG5309 116 AVEKTILSAYLPYNGWDDVTTVTVGNEALNRND-LTASQLIEYIDDVRSAVKEAGYD-GPVTTVDSWNVVIN 185 (305)
T ss_pred hHHHHHHHHHhccCCCCceEEEEechhhhhcCC-CCHHHHHHHHHHHHHHHHhcCCC-CceeecccceeeeC
Confidence 222234456777777788999999999985432 23677888899999999999986 67787766666543
No 3
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.25 E-value=0.011 Score=55.73 Aligned_cols=127 Identities=21% Similarity=0.378 Sum_probs=69.0
Q ss_pred ceeeecCCCC-------CCCChhHHH----HhhhhhcCCCeEEeecCChh-----HHhhhcCCCceEEEecChhhhhhcc
Q 038099 27 VGVCYGQLGN-------NLPSPQESV----ELMIKSLKATRVKIYDANPK-----ILKALKNIDIQVSIMVPNEIINNIS 90 (250)
Q Consensus 27 iGVnyG~~g~-------nLPsp~~vv----~l~lks~~i~~vriyd~d~~-----vL~AlagsgI~v~v~vpN~~l~~la 90 (250)
.||.|=.-++ +..+-.++. .+ +|++||.-||+|.-||. -+++|+..||=|++.+... -.+|
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~-l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI- 106 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPL-LKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSI- 106 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHH-HHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHH-HHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-Cccc-
Confidence 5888866555 222222333 37 89999999999976654 7999999999999988754 2222
Q ss_pred ccChHHHHHHHh-------cccccCCCCccEEEEeeccccccCC-CCCccchhhHHHHHHHHHHHHcCCCCeEEc
Q 038099 91 LSSQTLSDQWVR-------TNVLPYLPGTKIRYLLVGNEILSLP-DKSIWPNLVPAMRKIRKSLKTLGARKIKVG 157 (250)
Q Consensus 91 ~~s~~~A~~WV~-------~nV~p~~p~t~I~~I~VGNEvl~~~-~~~~~~~lvPAM~Ni~~AL~~~gL~~IKVS 157 (250)
.+..-+..|=. +-|-.|-.=.|.-..-+||||.... +...++.+=.+.|.+++-+++.|...|.|.
T Consensus 107 -~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPVG 180 (314)
T PF03198_consen 107 -NRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPVG 180 (314)
T ss_dssp --TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----EE
T ss_pred -cCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 22223345522 2233333346777889999998542 334467777888889999999888666554
No 4
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=86.84 E-value=0.65 Score=39.71 Aligned_cols=39 Identities=21% Similarity=0.461 Sum_probs=28.7
Q ss_pred HHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 43 ESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 43 ~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
-.+|. ||..||++||+...+|.-+.||.|-||+|+=.+|
T Consensus 130 igaqI-L~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 130 IGAQI-LRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHH-HHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHH-HHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 45778 9999999999999999999999999999986655
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=82.32 E-value=7.6 Score=33.86 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=77.7
Q ss_pred ChhHHHHhhhhhcCCCeEEeecC-------Ch-------------hHHhhhcCCCceEEEecChh-hh---hhccccChH
Q 038099 40 SPQESVELMIKSLKATRVKIYDA-------NP-------------KILKALKNIDIQVSIMVPNE-II---NNISLSSQT 95 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~-------d~-------------~vL~AlagsgI~v~v~vpN~-~l---~~la~~s~~ 95 (250)
..++..+. +|+.|+..|||.-. ++ ++|++++.-||.|+|.+-+. .. .... ....
T Consensus 22 ~~~~~~~~-~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~-~~~~ 99 (281)
T PF00150_consen 22 ITEADFDQ-LKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGY-GNND 99 (281)
T ss_dssp SHHHHHHH-HHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTT-TTHH
T ss_pred CHHHHHHH-HHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccc-ccch
Confidence 67888999 99999999999722 22 36888899999999988764 01 1111 2233
Q ss_pred HHHHHHhc---ccccCC-CCccEEEEeeccccccCCCCCcc-----chhhHHHHHHHHHHHHcCCCC-eEEcC
Q 038099 96 LSDQWVRT---NVLPYL-PGTKIRYLLVGNEILSLPDKSIW-----PNLVPAMRKIRKSLKTLGARK-IKVGT 158 (250)
Q Consensus 96 ~A~~WV~~---nV~p~~-p~t~I~~I~VGNEvl~~~~~~~~-----~~lvPAM~Ni~~AL~~~gL~~-IKVST 158 (250)
...+|.++ -+...| ..-.|.++=+.||+-.......+ ..+.+.++.+.+++++.+-+. |-+..
T Consensus 100 ~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 100 TAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred hhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 34444433 333333 33457789999999764322112 567888999999999999987 65554
No 6
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=78.29 E-value=2.6 Score=36.74 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=32.2
Q ss_pred HHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEec
Q 038099 45 VELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMV 81 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~v 81 (250)
+|. |+..||++||+...++.=..+|.|-||+|+=-+
T Consensus 131 AQI-L~dLGV~~~rLLtn~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 131 ADI-LEDLGVKKVRLLTNNPKKIEILKKAGINIVERV 166 (191)
T ss_pred HHH-HHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 788 999999999999989988999999999997333
No 7
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=78.22 E-value=2.6 Score=36.96 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=32.3
Q ss_pred HHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEec
Q 038099 45 VELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMV 81 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~v 81 (250)
+|. ||..||++||+...+|.-..+|.|-||+|+=-+
T Consensus 134 AQI-L~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADM-LKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHH-HHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 788 999999999999999988999999999997433
No 8
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=77.91 E-value=5.5 Score=28.13 Aligned_cols=41 Identities=32% Similarity=0.331 Sum_probs=35.9
Q ss_pred ChhHHHHhhhhhcCCCeEEeecCC-----hhHHhhhcCCCceEEEec
Q 038099 40 SPQESVELMIKSLKATRVKIYDAN-----PKILKALKNIDIQVSIMV 81 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~d-----~~vL~AlagsgI~v~v~v 81 (250)
+|++.++. .+++|++.+-|-|-+ +...+..+..||+++.|+
T Consensus 16 ~~~~~~~~-a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKR-AKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHH-HHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 58899999 999999999999988 667777778889988886
No 9
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=72.73 E-value=4.3 Score=35.32 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=32.2
Q ss_pred HHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEec
Q 038099 45 VELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMV 81 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~v 81 (250)
+|. |+..||++||+...++.-..||.|-||+|+=-+
T Consensus 133 AQI-L~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQI-LRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHH-HHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 788 999999999999888888999999999997444
No 10
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=71.26 E-value=4.9 Score=38.87 Aligned_cols=35 Identities=14% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEe
Q 038099 44 SVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIM 80 (250)
Q Consensus 44 vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~ 80 (250)
.+|+ ||..||++|||. .||.=..+|.+-||+|+=-
T Consensus 330 gAqI-Lr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~ 364 (369)
T PRK12485 330 GAQI-LQDLGVGKLRHL-GPPLKYAGLTGYDLEVVES 364 (369)
T ss_pred HHHH-HHHcCCCEEEEC-CCchhhhhhhhCCcEEEEE
Confidence 5777 999999999999 7899999999999999733
No 11
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=68.15 E-value=5.9 Score=37.94 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=30.9
Q ss_pred HHHhhhhhcCCCeEEeecCC-hhHHhhhcCCCceEE
Q 038099 44 SVELMIKSLKATRVKIYDAN-PKILKALKNIDIQVS 78 (250)
Q Consensus 44 vv~l~lks~~i~~vriyd~d-~~vL~AlagsgI~v~ 78 (250)
.+|. ||..||++||+...| |+=..+|.+-||+|+
T Consensus 300 gaqI-L~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQI-LKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHH-HHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4667 999999999999999 988999999999986
No 12
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=65.51 E-value=7.5 Score=37.51 Aligned_cols=36 Identities=14% Similarity=0.505 Sum_probs=32.1
Q ss_pred HHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 45 VELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
+|. ||..||++|||.. ||+=..+|.+-||+|+=-+|
T Consensus 328 aqI-L~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~~ 363 (367)
T PRK14019 328 AQI-LRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYVP 363 (367)
T ss_pred HHH-HHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEec
Confidence 677 9999999999998 99999999999999975443
No 13
>PRK05723 flavodoxin; Provisional
Probab=64.98 E-value=63 Score=26.94 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=64.8
Q ss_pred cceeeecCCCCCC-CChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecCh---hhhhhccccChHHHHHHH
Q 038099 26 KVGVCYGQLGNNL-PSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPN---EIINNISLSSQTLSDQWV 101 (250)
Q Consensus 26 ~iGVnyG~~g~nL-Psp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN---~~l~~la~~s~~~A~~WV 101 (250)
.|+|-||+..-|- ==++++.+. +++.|++-.-+.+.+..-+..+.. . .|++.++. .++| .+-..--+|+
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~-l~~~g~~~~~~~~~~~~~~~~~~~-~-~li~~~sT~G~Ge~P----d~~~~f~~~L 74 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESL-LKAAGFEAWHNPRASLQDLQAFAP-E-ALLAVTSTTGMGELP----DNLMPLYSAI 74 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHH-HHHCCCceeecCcCCHhHHHhCCC-C-eEEEEECCCCCCCCc----hhHHHHHHHH
Confidence 4789999864442 123444444 555666433334444544444422 2 23444443 2344 2323445677
Q ss_pred hcccccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCC
Q 038099 102 RTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK 153 (250)
Q Consensus 102 ~~nV~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~ 153 (250)
++.-...+++.++.-+..|+.- +...---|.+.+++.|++.|-.+
T Consensus 75 ~~~~~~~l~~~~~aVfGLGDs~-------Y~~~Fc~a~~~ld~~L~~lGA~r 119 (151)
T PRK05723 75 RDQLPAAWRGLPGAVIALGDSS-------YGDTFCGGGEQMRELFAELGVRE 119 (151)
T ss_pred HhcCccCCCCCEEEEEeEeCCc-------chHHHhHHHHHHHHHHHHCCCcE
Confidence 7653226777777666677642 33456779999999999999865
No 14
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=61.73 E-value=5.4 Score=31.92 Aligned_cols=27 Identities=30% Similarity=0.683 Sum_probs=22.0
Q ss_pred ChhHHHHhhhhhcCC---CeEEeecCChhHH
Q 038099 40 SPQESVELMIKSLKA---TRVKIYDANPKIL 67 (250)
Q Consensus 40 sp~~vv~l~lks~~i---~~vriyd~d~~vL 67 (250)
.|++|..+ |+++.. +|+||||+|..++
T Consensus 2 ~pe~a~pl-LrrL~~Pt~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 2 NPERARPL-LRRLISPTRTRARLYDPDGNLL 31 (112)
T ss_pred CHHHHHHH-HHHhCCCCCceEEEECCCCCEE
Confidence 47888888 888754 8999999998754
No 15
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=61.44 E-value=12 Score=36.61 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=33.5
Q ss_pred HHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 44 SVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 44 vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
.+|. ||..||++||+...||+=..+|.+-||+|.=.+|
T Consensus 338 gaqI-L~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQI-LVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHH-HHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 4777 9999999999999999999999999999974443
No 16
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=61.39 E-value=11 Score=38.45 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=34.0
Q ss_pred HHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 44 SVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 44 vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
.+|. |+..||++|||...||+=..+|.+-||+|+=-+|
T Consensus 342 gAQI-L~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQI-LNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHH-HHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 3777 9999999999999999999999999999985554
No 17
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=61.23 E-value=20 Score=32.58 Aligned_cols=94 Identities=21% Similarity=0.190 Sum_probs=56.0
Q ss_pred ceeeecC----CCCCCCChhHH---HHhhhhhcCCCeEEee--cCChhHHhhhcCCCceEEEecChhhh--hh-------
Q 038099 27 VGVCYGQ----LGNNLPSPQES---VELMIKSLKATRVKIY--DANPKILKALKNIDIQVSIMVPNEII--NN------- 88 (250)
Q Consensus 27 iGVnyG~----~g~nLPsp~~v---v~l~lks~~i~~vriy--d~d~~vL~AlagsgI~v~v~vpN~~l--~~------- 88 (250)
-|||+.. .|.- ++.++. +++ +|+.|+..||+. -+++..+.+.-.-||=|+..+|.+-. ..
T Consensus 18 ~Gv~~h~~~~~~g~a-~~~~~~~~d~~l-~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~ 95 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRA-MPDEAMERDLEL-MKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNY 95 (298)
T ss_dssp EEEEE-S-BTTTBT----HHHHHHHHHH-HHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSC
T ss_pred EEEeeCcCccccccc-CCHHHHHHHHHH-HHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCcccc
Confidence 4888775 3433 344444 345 799999999985 56789999999999999998886211 10
Q ss_pred ccccChH---HHHHHHhcccccCCCCccEEEEeecccc
Q 038099 89 ISLSSQT---LSDQWVRTNVLPYLPGTKIRYLLVGNEI 123 (250)
Q Consensus 89 la~~s~~---~A~~WV~~nV~p~~p~t~I~~I~VGNEv 123 (250)
.+ .++. .+.+-+++-|..+...--|-.=.+|||.
T Consensus 96 ~~-~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DA-DDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TT-TSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CC-CCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 11 2332 3345566677777655666677789998
No 18
>PRK09004 FMN-binding protein MioC; Provisional
Probab=59.93 E-value=78 Score=26.05 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=65.1
Q ss_pred cceeeecCCCCCC-CChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecCh---hhhhhccccChHHHHHHH
Q 038099 26 KVGVCYGQLGNNL-PSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPN---EIINNISLSSQTLSDQWV 101 (250)
Q Consensus 26 ~iGVnyG~~g~nL-Psp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN---~~l~~la~~s~~~A~~WV 101 (250)
.|.|-||+..-|- ==++++.+. +++.|++ +++.|.+. +..+..... +++.++. .+.| .+-..=-+|+
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~-~~~~g~~-~~~~~~~~--~~~l~~~~~-li~~~sT~G~Ge~p----~~~~~f~~~L 73 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEK-LEEAGFS-TETLHGPL--LDDLSASGL-WLIVTSTHGAGDLP----DNLQPFFEEL 73 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHH-HHHcCCc-eEEeccCC--HHHhccCCe-EEEEECCCCCCCCC----hhHHHHHHHH
Confidence 5889999865552 224455555 6666763 56666543 455665543 4444443 3444 2223344566
Q ss_pred hcccccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCC
Q 038099 102 RTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK 153 (250)
Q Consensus 102 ~~nV~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~ 153 (250)
+.. .+-+.+.++.-...||.- + ..-=-+++++.+.|.+.|-.+
T Consensus 74 ~~~-~~~l~g~~~aVfGlGds~-------Y-~~fc~~~~~ld~~l~~lGa~~ 116 (146)
T PRK09004 74 QEQ-KPDLSQVRFAAIGIGSSE-------Y-DTFCGAIDKLEQLLKAKGAKQ 116 (146)
T ss_pred Hhc-CCCCCCCEEEEEeecCCC-------H-HHHhHHHHHHHHHHHHcCCeE
Confidence 664 344666665555556532 2 456678999999999988854
No 19
>PRK08815 GTP cyclohydrolase; Provisional
Probab=59.91 E-value=12 Score=36.32 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=33.3
Q ss_pred HHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 45 VELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
+|. ||..||++||+...+|.=..+|.+-||+|+=-+|
T Consensus 305 AQI-L~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAM-LRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHH-HHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 778 9999999999999999999999999999985554
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=59.72 E-value=91 Score=29.75 Aligned_cols=168 Identities=20% Similarity=0.272 Sum_probs=78.0
Q ss_pred eeee-cCCCCCCCChhHHHHhhhhhcCCCeEE--ee-cCCh----------hHHhhhcCCCceEEEec--------Chh-
Q 038099 28 GVCY-GQLGNNLPSPQESVELMIKSLKATRVK--IY-DANP----------KILKALKNIDIQVSIMV--------PNE- 84 (250)
Q Consensus 28 GVny-G~~g~nLPsp~~vv~l~lks~~i~~vr--iy-d~d~----------~vL~AlagsgI~v~v~v--------pN~- 84 (250)
|+-| -..|. ..++.++ ||+.|+..|| +| ||.. ...+--+.-|.+|++.. |..
T Consensus 16 G~~f~~~~G~----~~d~~~i-lk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q 90 (332)
T PF07745_consen 16 GVKFYDENGQ----EKDLFQI-LKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ 90 (332)
T ss_dssp T---B-TTSS----B--HHHH-HHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-
T ss_pred CCeEECCCCC----CCCHHHH-HHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC
Confidence 5553 34442 5688999 9999986554 55 4444 24444567899999975 222
Q ss_pred hhhhccccC------hHHHHHHHhcccccCC-CCccEEEEeeccccccC---C--CCCccchhhHHHHHHHHHHHHcCCC
Q 038099 85 IINNISLSS------QTLSDQWVRTNVLPYL-PGTKIRYLLVGNEILSL---P--DKSIWPNLVPAMRKIRKSLKTLGAR 152 (250)
Q Consensus 85 ~l~~la~~s------~~~A~~WV~~nV~p~~-p~t~I~~I~VGNEvl~~---~--~~~~~~~lvPAM~Ni~~AL~~~gL~ 152 (250)
.+|.== .+ ..+...+.++-+...- -++....|.||||+-.+ . ...-+..+.-=++.-.+|.++.+=+
T Consensus 91 ~~P~aW-~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~ 169 (332)
T PF07745_consen 91 NKPAAW-ANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPN 169 (332)
T ss_dssp B--TTC-TSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSST
T ss_pred CCCccC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCC
Confidence 222100 11 1334444444333322 35778899999998642 1 1111333333333344555553322
Q ss_pred CeEEcC---------------------ccccccccccCCCCCcccCCcchhhhHHHHHHHHh-hcCCcceec--cCCCC
Q 038099 153 KIKVGT---------------------PSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLN-RTKSFFFVD--AYTFF 207 (250)
Q Consensus 153 ~IKVST---------------------~~s~~iL~~s~PPSag~F~~~~~~~~m~pil~FL~-~tgSPf~vN--vYPyf 207 (250)
+||-. -..+|+++-||-|--.. .+ .-++..++.|+ +-|.|+||- -|||=
T Consensus 170 -~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~---~l--~~l~~~l~~l~~ry~K~V~V~Et~yp~t 242 (332)
T PF07745_consen 170 -IKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHG---TL--EDLKNNLNDLASRYGKPVMVVETGYPWT 242 (332)
T ss_dssp -SEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST----H--HHHHHHHHHHHHHHT-EEEEEEE---SB
T ss_pred -CcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcc---hH--HHHHHHHHHHHHHhCCeeEEEecccccc
Confidence 44321 25678888888774222 22 33555566554 457888886 78864
No 21
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=59.33 E-value=12 Score=36.37 Aligned_cols=38 Identities=32% Similarity=0.559 Sum_probs=33.9
Q ss_pred HHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 44 SVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 44 vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
.+|. ||..||++||+...||+=..+|.+-||+|.=.+|
T Consensus 319 gAqI-L~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQI-LKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHH-HHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 3777 9999999999999999999999999999985554
No 22
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=59.00 E-value=13 Score=37.00 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=33.6
Q ss_pred HHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 44 SVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 44 vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
.+|. ||..||++||+...||+=..+|.+-||+|+=.+|
T Consensus 372 gAqI-L~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQI-LRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHH-HHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 3777 9999999999999999999999999999974444
No 23
>PRK07198 hypothetical protein; Validated
Probab=58.89 E-value=6.8 Score=38.46 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=33.1
Q ss_pred HHHhhhhhcCCCeE-EeecCChhHHhhhcCCCceEEEecC
Q 038099 44 SVELMIKSLKATRV-KIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 44 vv~l~lks~~i~~v-riyd~d~~vL~AlagsgI~v~v~vp 82 (250)
-+|. |+.+||++| |+...++.=..+|.|.||+|+=-+|
T Consensus 337 GAQI-LrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 337 MPDV-LHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHH-HHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 4567 999999999 9999999899999999999974443
No 24
>PRK10150 beta-D-glucuronidase; Provisional
Probab=52.52 E-value=1.1e+02 Score=30.99 Aligned_cols=79 Identities=14% Similarity=0.049 Sum_probs=52.6
Q ss_pred HHHhhhhhcCCCeEEee--cCChhHHhhhcCCCceEEEecChhhh------------------hhccccChHH---HHHH
Q 038099 44 SVELMIKSLKATRVKIY--DANPKILKALKNIDIQVSIMVPNEII------------------NNISLSSQTL---SDQW 100 (250)
Q Consensus 44 vv~l~lks~~i~~vriy--d~d~~vL~AlagsgI~v~v~vpN~~l------------------~~la~~s~~~---A~~W 100 (250)
-+++ +|+.|+..||+. =.++..+.+.-.-||=|+..+|.... ...+ .++.. ..+-
T Consensus 318 d~~l-~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 395 (604)
T PRK10150 318 DHNL-MKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEA-VNGETQQAHLQA 395 (604)
T ss_pred HHHH-HHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccc-cchhHHHHHHHH
Confidence 3567 899999999984 34788999999999999987764211 0000 01111 2222
Q ss_pred HhcccccCCCCccEEEEeeccccc
Q 038099 101 VRTNVLPYLPGTKIRYLLVGNEIL 124 (250)
Q Consensus 101 V~~nV~p~~p~t~I~~I~VGNEvl 124 (250)
+++-|..+...--|-.=.+|||.-
T Consensus 396 ~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 396 IRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred HHHHHHhccCCceEEEEeeccCCC
Confidence 555677776666677778899974
No 25
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=51.01 E-value=22 Score=31.47 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=34.7
Q ss_pred HHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChh
Q 038099 45 VELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNE 84 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~ 84 (250)
+|. ||..||+++|+-..+|.=..++.+-||+|.=.+|..
T Consensus 133 AqI-L~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQI-LKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHH-HHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 556 999999999999999999999999999998877753
No 26
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=49.15 E-value=31 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=32.0
Q ss_pred ccCCcceeeecCCCCCCCChhHHHHhhhhhcCCCeEEee
Q 038099 22 EMSSKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIY 60 (250)
Q Consensus 22 ~~~~~iGVnyG~~g~nLPsp~~vv~l~lks~~i~~vriy 60 (250)
.....|-|.-.+.|..+|..++|-+. |++.||.--++.
T Consensus 29 ge~pAvqIs~~~~~~~~~~~~~v~~~-L~~~~I~~k~i~ 66 (101)
T PF13721_consen 29 GEDPAVQISASSAGVQLPDAFQVEQA-LKAAGIAVKSIE 66 (101)
T ss_pred CCCCcEEEecCCCCccCChHHHHHHH-HHHCCCCcceEE
Confidence 45667889998888899999999999 999999776664
No 27
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=48.42 E-value=60 Score=32.09 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=75.8
Q ss_pred HHhhhcCCCce-EEEecChhhhhhccccChHHHHHHHhcccccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHH
Q 038099 66 ILKALKNIDIQ-VSIMVPNEIINNISLSSQTLSDQWVRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRK 144 (250)
Q Consensus 66 vL~AlagsgI~-v~v~vpN~~l~~la~~s~~~A~~WV~~nV~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~ 144 (250)
.|+.|...|.. ++|.++.++...+ ++|+.+|..=....--+.+.+.+||-+.+. -++++||.
T Consensus 46 pL~~L~~~gfteiiVv~~e~e~~~i--------~~al~~~~~l~~~~~~v~ip~~~~~d~gta---------dsLr~Iy~ 108 (433)
T KOG1462|consen 46 PLNSLEQAGFTEIIVVVNEDEKLDI--------ESALGSNIDLKKRPDYVEIPTDDNSDFGTA---------DSLRYIYS 108 (433)
T ss_pred ehhHHHhcCCeEEEEEecHHHHHHH--------HHHHhcCCcccccccEEEeecccccccCCH---------HHHhhhhh
Confidence 56777777765 5556654455444 578988877655555678889999876543 35778887
Q ss_pred HHHHcCCCC-eEEcCccccccccccCCCCCcccCCcchhhhHHHHHHHHhhcCCcceeccCCCCcCCCCCC
Q 038099 145 SLKTLGARK-IKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYTFFPWSSDPK 214 (250)
Q Consensus 145 AL~~~gL~~-IKVST~~s~~iL~~s~PPSag~F~~~~~~~~m~pil~FL~~tgSPf~vNvYPyfay~~~p~ 214 (250)
-+++ ++ +-+| +.|-.|+. +.|++++.+.+++-|++=+|+..++...|.
T Consensus 109 kikS---~Dflvls----------------CD~Vtdv~---l~~lvd~FR~~d~slamli~~~~s~~~~pg 157 (433)
T KOG1462|consen 109 KIKS---EDFLVLS----------------CDFVTDVP---LQPLVDKFRATDASLAMLIGNALSEVPIPG 157 (433)
T ss_pred hhcc---CCEEEEe----------------cccccCCC---cHHHHHHHhccChhHhHHhccccccccccC
Confidence 6655 33 3222 33444443 679999999999999999999988876663
No 28
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=48.03 E-value=36 Score=31.93 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=39.6
Q ss_pred chhhHHH-HHHHHHHHHcCCCCeEEcCccccccccccCCCCCcccCCcc--hhhhHHHHHHHHhhcCCcce
Q 038099 133 PNLVPAM-RKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDI--SESVMRPMLHFLNRTKSFFF 200 (250)
Q Consensus 133 ~~lvPAM-~Ni~~AL~~~gL~~IKVST~~s~~iL~~s~PPSag~F~~~~--~~~~m~pil~FL~~tgSPf~ 200 (250)
..++-|| +.++.|+.+.|-.+++|. ++++=.||+|...... ++.+.+-+.+|+. .|.|..
T Consensus 206 ~nlfDa~~da~~~a~~~~g~~~~~vv-------v~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~-~gt~~~ 268 (310)
T PF00332_consen 206 TNLFDAMVDAVYAAMEKLGFPNVPVV-------VGETGWPSAGDPGATPENAQAYNQNLIKHVL-KGTPLR 268 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTT-TT--EE-------EEEE---SSSSTTCSHHHHHHHHHHHHHHCC-GBBSSS
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceeE-------EeccccccCCCCCCCcchhHHHHHHHHHHHh-CCCccc
Confidence 3456555 789999999999876654 4677789999855433 4478889999988 666664
No 29
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=47.31 E-value=19 Score=28.82 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=24.5
Q ss_pred CccchhhHHHHHHHHHHHHcCCCC-eEEcC
Q 038099 130 SIWPNLVPAMRKIRKSLKTLGARK-IKVGT 158 (250)
Q Consensus 130 ~~~~~lvPAM~Ni~~AL~~~gL~~-IKVST 158 (250)
.+....--+|+||...|+++|.++ +|+++
T Consensus 30 ~~~~Q~~qal~Ni~~vL~~aG~~dVvk~~i 59 (118)
T cd06156 30 GITLQAVLSLQHLERVAKAMNVQWVLAAVC 59 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 345678889999999999999966 88884
No 30
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=47.27 E-value=25 Score=28.60 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=29.3
Q ss_pred hhHHHHhhhhhcCCCeEEeec------------CC-hhHHhhhcCCCceEEE
Q 038099 41 PQESVELMIKSLKATRVKIYD------------AN-PKILKALKNIDIQVSI 79 (250)
Q Consensus 41 p~~vv~l~lks~~i~~vriyd------------~d-~~vL~AlagsgI~v~v 79 (250)
++++++. .++.||+.|+++- +. ...|++|+.+|+++..
T Consensus 52 a~~~~~~-~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 52 AGRAAEK-AKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHH-HHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 4667777 8899999988874 22 3489999999999743
No 31
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=46.52 E-value=58 Score=30.91 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=62.5
Q ss_pred cCCCeEEee-cCChhHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcccc----cCCCCccEEEEeeccccccC
Q 038099 52 LKATRVKIY-DANPKILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTNVL----PYLPGTKIRYLLVGNEILSL 126 (250)
Q Consensus 52 ~~i~~vriy-d~d~~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~nV~----p~~p~t~I~~I~VGNEvl~~ 126 (250)
..|+.+.+| +.|++++..-...|++|++..... .+.+ +++..-++|+++-|. -.+.+++|-.=-.+.+
T Consensus 54 ~~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l--~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~---- 126 (358)
T cd02875 54 SKVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI--SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITK---- 126 (358)
T ss_pred ccceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc--CCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCC----
Confidence 458999999 568889987777999998864321 2334 576666667665431 2234555544322221
Q ss_pred CCCCccchhhHHHHHHHHHHHHcCCCC-eEEcCc
Q 038099 127 PDKSIWPNLVPAMRKIRKSLKTLGARK-IKVGTP 159 (250)
Q Consensus 127 ~~~~~~~~lvPAM~Ni~~AL~~~gL~~-IKVST~ 159 (250)
++.....+.-=|+.++++|.+.|.+. +-++++
T Consensus 127 -~~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~ 159 (358)
T cd02875 127 -GSPEYYALTELVKETTKAFKKENPGYQISFDVA 159 (358)
T ss_pred -CcchHHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Confidence 11224567788899999999887654 555444
No 32
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=44.87 E-value=40 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=27.3
Q ss_pred hHHHHhhhhhcCCCeEEeec--C---ChhHHhhhcCCCceEE
Q 038099 42 QESVELMIKSLKATRVKIYD--A---NPKILKALKNIDIQVS 78 (250)
Q Consensus 42 ~~vv~l~lks~~i~~vriyd--~---d~~vL~AlagsgI~v~ 78 (250)
+++.+. ++++||+.|+|+- + -..+|++|+.+|+++.
T Consensus 50 ~~~~~~-~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKK-AKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHH-HHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445566 7889999999983 2 3349999999998864
No 33
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=44.86 E-value=1.3e+02 Score=28.64 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=54.3
Q ss_pred CcceeeecCCCCCCCChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcc
Q 038099 25 SKVGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTN 104 (250)
Q Consensus 25 ~~iGVnyG~~g~nLPsp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~n 104 (250)
.-+|||.=...++ |.-++.++. +...+++-|-+.--+|...+.+...||.|+..|+ |...|..|.+.-
T Consensus 56 kPfGVnl~~~~~~-~~~~~~l~v-i~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~----------s~~~A~~a~~~G 123 (320)
T cd04743 56 KPWGVGILGFVDT-ELRAAQLAV-VRAIKPTFALIAGGRPDQARALEAIGISTYLHVP----------SPGLLKQFLENG 123 (320)
T ss_pred CCeEEEEeccCCC-cchHHHHHH-HHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC----------CHHHHHHHHHcC
Confidence 3578887433322 334567777 7777888887776677777999999999998876 445666666653
Q ss_pred cccCCCCccEEEEeecccc
Q 038099 105 VLPYLPGTKIRYLLVGNEI 123 (250)
Q Consensus 105 V~p~~p~t~I~~I~VGNEv 123 (250)
+ .. -|+-|.|.
T Consensus 124 a-------D~-vVaqG~EA 134 (320)
T cd04743 124 A-------RK-FIFEGREC 134 (320)
T ss_pred C-------CE-EEEecCcC
Confidence 2 22 46779887
No 34
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=41.86 E-value=40 Score=28.77 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=30.0
Q ss_pred hhHHHHhhhhhcCCCeEEeec------------CChh-HHhhhcCCCceEEE
Q 038099 41 PQESVELMIKSLKATRVKIYD------------ANPK-ILKALKNIDIQVSI 79 (250)
Q Consensus 41 p~~vv~l~lks~~i~~vriyd------------~d~~-vL~AlagsgI~v~v 79 (250)
++++++. .+..||+.|+|+- +..+ .|++|+.+|+++..
T Consensus 78 a~~~a~k-~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 78 AQDVAAR-CKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHH-HHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 4567777 7899999999887 4333 89999999999854
No 35
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=41.38 E-value=30 Score=27.99 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=30.1
Q ss_pred CCCCCcccCCcchhhhHHHHHHHHhh--cCCcceeccCCCCcCCCCCCC
Q 038099 169 FPPSNGTFRSDISESVMRPMLHFLNR--TKSFFFVDAYTFFPWSSDPKN 215 (250)
Q Consensus 169 ~PPSag~F~~~~~~~~m~pil~FL~~--tgSPf~vNvYPyfay~~~p~~ 215 (250)
.|=++..+++| +.++-+.+|.+. -|+-.|+|+||+.+ .||..
T Consensus 21 NPS~A~~~~~D---~T~~~~~~~a~~~gyg~~~i~NLf~~~~--t~p~~ 64 (136)
T PF07799_consen 21 NPSTADAEKDD---PTIRRCINFARRWGYGGVIIVNLFPQRS--TDPKD 64 (136)
T ss_pred CCCCCCCcCCC---HHHHHHHHHHhhcCCCeEEEEEeccccc--CCHHH
Confidence 34456666665 668889999876 57888999999855 45543
No 36
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=41.34 E-value=32 Score=31.49 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=26.9
Q ss_pred hhHHHHhhhhhcCCCeEEee-cCChhHHhhhcCCCce
Q 038099 41 PQESVELMIKSLKATRVKIY-DANPKILKALKNIDIQ 76 (250)
Q Consensus 41 p~~vv~l~lks~~i~~vriy-d~d~~vL~AlagsgI~ 76 (250)
-.++++. ||+.|| +|-|| |||++-+++-+..|-+
T Consensus 112 l~~~i~~-l~~~gI-~VSLFiDP~~~qi~~A~~~GAd 146 (237)
T TIGR00559 112 LCELVKR-FHAAGI-EVSLFIDADKDQISAAAEVGAD 146 (237)
T ss_pred HHHHHHH-HHHCCC-EEEEEeCCCHHHHHHHHHhCcC
Confidence 4678888 888998 78888 8998888887776643
No 37
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=40.19 E-value=2.1e+02 Score=27.36 Aligned_cols=132 Identities=15% Similarity=0.209 Sum_probs=84.3
Q ss_pred CCCChhHHHHhhhh---hcCCCeEEeecCChh-------HHhhhcCCCc-eEEEecChhhhhhccccChHHHHHHHhccc
Q 038099 37 NLPSPQESVELMIK---SLKATRVKIYDANPK-------ILKALKNIDI-QVSIMVPNEIINNISLSSQTLSDQWVRTNV 105 (250)
Q Consensus 37 nLPsp~~vv~l~lk---s~~i~~vriyd~d~~-------vL~AlagsgI-~v~v~vpN~~l~~la~~s~~~A~~WV~~nV 105 (250)
++.+++++..+ .+ +.|+++|||-.-.|. +++.++..++ ++.++..--.++..| ..|-..
T Consensus 41 ~~Ls~eei~~~-~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a-------~~Lk~A-- 110 (322)
T COG2896 41 ELLSLEEIRRL-VRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRA-------ADLKEA-- 110 (322)
T ss_pred ccCCHHHHHHH-HHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHH-------HHHHHc--
Confidence 46689998877 64 578999999977764 6777776666 355554433455444 444443
Q ss_pred ccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCCeEEcCccccccccccCCCCCcccCCcchhhhH
Q 038099 106 LPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGTPSAMDVLQSSFPPSNGTFRSDISESVM 185 (250)
Q Consensus 106 ~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~IKVST~~s~~iL~~s~PPSag~F~~~~~~~~m 185 (250)
.+-.+||.-=+.=.|.+..-. -...+-..|+-|.+|. ++|+..||+-|-+=-+ +. ..-+
T Consensus 111 --Gl~rVNVSLDsld~e~f~~IT--~~~~~~~Vl~GI~~A~-~~Gl~pVKlN~Vv~kg------------vN----d~ei 169 (322)
T COG2896 111 --GLDRVNVSLDSLDPEKFRKIT--GRDRLDRVLEGIDAAV-EAGLTPVKLNTVLMKG------------VN----DDEI 169 (322)
T ss_pred --CCcEEEeecccCCHHHHHHHh--CCCcHHHHHHHHHHHH-HcCCCceEEEEEEecC------------CC----HHHH
Confidence 345567765555556553211 1234677788887775 5799889998743211 11 1457
Q ss_pred HHHHHHHhhcCCcc
Q 038099 186 RPMLHFLNRTKSFF 199 (250)
Q Consensus 186 ~pil~FL~~tgSPf 199 (250)
.++++|....|..+
T Consensus 170 ~~l~e~~~~~~~~l 183 (322)
T COG2896 170 EDLLEFAKERGAQL 183 (322)
T ss_pred HHHHHHHhhcCCce
Confidence 79999999998744
No 38
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=40.14 E-value=34 Score=31.23 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=28.1
Q ss_pred ChhHHHHhhhhhcCCCeEEee-cCChhHHhhhcCCCce
Q 038099 40 SPQESVELMIKSLKATRVKIY-DANPKILKALKNIDIQ 76 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriy-d~d~~vL~AlagsgI~ 76 (250)
.-.++++- ||+.|| +|-|| |||++-+++-+..|-+
T Consensus 111 ~l~~~i~~-l~~~gI-~VSLFiDPd~~qi~~A~~~GAd 146 (234)
T cd00003 111 KLKPIIER-LKDAGI-RVSLFIDPDPEQIEAAKEVGAD 146 (234)
T ss_pred HHHHHHHH-HHHCCC-EEEEEeCCCHHHHHHHHHhCcC
Confidence 34678888 899999 68888 9999988887777744
No 39
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=39.74 E-value=23 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=24.3
Q ss_pred hhHHhhhcCCCceEEEecChhhhhhcc
Q 038099 64 PKILKALKNIDIQVSIMVPNEIINNIS 90 (250)
Q Consensus 64 ~~vL~AlagsgI~v~v~vpN~~l~~la 90 (250)
.++++|+++-++||+++++.++.+.+.
T Consensus 64 ~~ll~ala~ldvEvV~a~~~~~~~~lg 90 (97)
T PF06722_consen 64 RRLLEALAGLDVEVVVALPAAQRAELG 90 (97)
T ss_dssp HHHHHHHHTSSSEEEEEETTCCCGGCC
T ss_pred HHHHHHHhhCCcEEEEECCHHHHHhhC
Confidence 478999999999999999998888775
No 40
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=37.53 E-value=40 Score=30.92 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=24.1
Q ss_pred hhHHHHhhhhhcCCCeEEee-cCChhHHhhhcCCCc
Q 038099 41 PQESVELMIKSLKATRVKIY-DANPKILKALKNIDI 75 (250)
Q Consensus 41 p~~vv~l~lks~~i~~vriy-d~d~~vL~AlagsgI 75 (250)
-.++++- ||+.|| +|-|| |||++-+++-+..|-
T Consensus 115 l~~~i~~-L~~~gI-rVSLFidP~~~qi~~A~~~GA 148 (239)
T PRK05265 115 LKPAIAR-LKDAGI-RVSLFIDPDPEQIEAAAEVGA 148 (239)
T ss_pred HHHHHHH-HHHCCC-EEEEEeCCCHHHHHHHHHhCc
Confidence 4567777 788888 77777 888887777666653
No 41
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=36.77 E-value=49 Score=25.48 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=24.4
Q ss_pred CCccchhhHHHHHHHHHHHHcCCC--C-eEEcC
Q 038099 129 KSIWPNLVPAMRKIRKSLKTLGAR--K-IKVGT 158 (250)
Q Consensus 129 ~~~~~~lvPAM~Ni~~AL~~~gL~--~-IKVST 158 (250)
+......--+|+||...|+++|.+ + +|++.
T Consensus 25 ~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~v 57 (105)
T cd06150 25 ADITGQTRQVLAKIDALLAEAGSDKSRILSATI 57 (105)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 345677899999999999999975 4 78774
No 42
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.90 E-value=1.2e+02 Score=27.06 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=38.6
Q ss_pred ChhHHHHhhhhhcCCCeEEeecCC----hhHHhhhcC--CCceEEEecChhhhhhccccChHHHHHHHhcc
Q 038099 40 SPQESVELMIKSLKATRVKIYDAN----PKILKALKN--IDIQVSIMVPNEIINNISLSSQTLSDQWVRTN 104 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~d----~~vL~Alag--sgI~v~v~vpN~~l~~la~~s~~~A~~WV~~n 104 (250)
+|+++.+ ..+.|.+.||+|+++ +.-++++++ .+++++.+=. =+......|++..
T Consensus 117 TptEi~~--a~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~ptGG---------V~~~ni~~~l~ag 176 (212)
T PRK05718 117 TPSELML--GMELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFCPTGG---------ISPANYRDYLALP 176 (212)
T ss_pred CHHHHHH--HHHCCCCEEEEccchhccCHHHHHHHhccCCCCeEEEeCC---------CCHHHHHHHHhCC
Confidence 5888555 578899999999876 678899887 4666664321 2456777888753
No 43
>CHL00041 rps11 ribosomal protein S11
Probab=33.38 E-value=76 Score=25.64 Aligned_cols=36 Identities=11% Similarity=0.266 Sum_probs=26.8
Q ss_pred hHHHHhhhhhcCCCeEEeec----CC-hhHHhhhcCCCceEE
Q 038099 42 QESVELMIKSLKATRVKIYD----AN-PKILKALKNIDIQVS 78 (250)
Q Consensus 42 ~~vv~l~lks~~i~~vriyd----~d-~~vL~AlagsgI~v~ 78 (250)
+++.+. +++.|++.++|+- +- ..++++|+..|+++.
T Consensus 63 ~~~~~~-~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRT-VIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHH-HHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 345566 6788999999983 22 348999999999864
No 44
>PRK09492 treR trehalose repressor; Provisional
Probab=33.30 E-value=1.9e+02 Score=25.46 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=53.7
Q ss_pred CCCCChhHHHHhhhhhcCCCeEEeecC---Ch--------hHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcc
Q 038099 36 NNLPSPQESVELMIKSLKATRVKIYDA---NP--------KILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTN 104 (250)
Q Consensus 36 ~nLPsp~~vv~l~lks~~i~~vriyd~---d~--------~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~n 104 (250)
||--.-.++++. |.++|-+++-+... +. ...+|++..|+++.....+.. .. .....+++|++.
T Consensus 158 D~~~~~~~a~~~-L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~---~~-~~~~~~~~~l~~- 231 (315)
T PRK09492 158 DDEGAIKLLMQR-LYDQGHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVAALGGLS---MQ-SGYELVAKVLTP- 231 (315)
T ss_pred CcHHHHHHHHHH-HHHcCCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCceeecCCCC---ch-HHHHHHHHHhhc-
Confidence 333345667888 66789999988742 11 134667778887543211100 00 112334455531
Q ss_pred cccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCCeEEcC
Q 038099 105 VLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVGT 158 (250)
Q Consensus 105 V~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~IKVST 158 (250)
+++.|.+.|+... .-+.++|.+.|+++|.|..
T Consensus 232 --------~~~ai~~~~D~~A--------------~g~~~al~~~g~~disvig 263 (315)
T PRK09492 232 --------ETTALVCATDTLA--------------LGASKYLQEQGRDDIQVAG 263 (315)
T ss_pred --------CCCEEEEcCcHHH--------------HHHHHHHHHcCCCceEEEe
Confidence 3578888876542 1245688889996677654
No 45
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=33.25 E-value=46 Score=30.54 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=26.2
Q ss_pred CChhHHHHhhhhhcCCCeEEee-cCChhHHhhhcCCCce
Q 038099 39 PSPQESVELMIKSLKATRVKIY-DANPKILKALKNIDIQ 76 (250)
Q Consensus 39 Psp~~vv~l~lks~~i~~vriy-d~d~~vL~AlagsgI~ 76 (250)
..-.++++- ||+.|| +|-+| |||++-+++-+..|.+
T Consensus 111 ~~l~~~i~~-L~~~gI-rvSLFiDP~~~qi~~A~~~Gad 147 (239)
T PF03740_consen 111 DRLKPVIKR-LKDAGI-RVSLFIDPDPEQIEAAKELGAD 147 (239)
T ss_dssp HHHHHHHHH-HHHTT--EEEEEE-S-HHHHHHHHHTT-S
T ss_pred HHHHHHHHH-HHhCCC-EEEEEeCCCHHHHHHHHHcCCC
Confidence 345678888 899999 88888 9999999988877755
No 46
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=32.86 E-value=77 Score=25.99 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=40.5
Q ss_pred CCCCCCh--hHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecC
Q 038099 35 GNNLPSP--QESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 35 g~nLPsp--~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vp 82 (250)
+.+.+.. .+++++ |+++|++-|=.-.--|..+++|+.-||+|..+-+
T Consensus 46 ~~~~~~g~G~~~a~~-l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 46 AASAEKGAGIRIAEL-LVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred cccccCcchHHHHHH-HHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3355555 368999 9999999999999999999999999999999977
No 47
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=32.33 E-value=68 Score=27.35 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=30.8
Q ss_pred hhhcCCCeEEee--cCChhH----HhhhcCCCceEEEecChhhhhhc
Q 038099 49 IKSLKATRVKIY--DANPKI----LKALKNIDIQVSIMVPNEIINNI 89 (250)
Q Consensus 49 lks~~i~~vriy--d~d~~v----L~AlagsgI~v~v~vpN~~l~~l 89 (250)
|-..||.||-+= ||||.+ +.-|+..||+|.+++..++-..+
T Consensus 91 li~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l 137 (146)
T COG0117 91 LIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKL 137 (146)
T ss_pred HHHhCCCEEEEEecCCCccccCchHHHHHHcCCeEEEehhHHHHHHH
Confidence 444589998776 677643 56788899999999988776654
No 48
>PRK05309 30S ribosomal protein S11; Validated
Probab=32.25 E-value=80 Score=26.03 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=27.1
Q ss_pred hHHHHhhhhhcCCCeEEeec----C-ChhHHhhhcCCCceEE
Q 038099 42 QESVELMIKSLKATRVKIYD----A-NPKILKALKNIDIQVS 78 (250)
Q Consensus 42 ~~vv~l~lks~~i~~vriyd----~-d~~vL~AlagsgI~v~ 78 (250)
+++.+. +++.||+.|+|+- + -..+|++|+.+|+.+.
T Consensus 67 ~~~~~~-~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKK-AKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHH-HHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 445566 7889999999983 2 2348999999998864
No 49
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=31.07 E-value=45 Score=27.50 Aligned_cols=26 Identities=8% Similarity=0.006 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHHHHcCCC-----C-eEEcC
Q 038099 133 PNLVPAMRKIRKSLKTLGAR-----K-IKVGT 158 (250)
Q Consensus 133 ~~lvPAM~Ni~~AL~~~gL~-----~-IKVST 158 (250)
...--+|+||...|+++|.+ + ||+++
T Consensus 56 ~Qt~~~~~Ni~~vL~~aG~~~~~~~dVvk~~v 87 (142)
T cd02199 56 EAARLCALNALAALKAALGDLDRVKRVVRLTG 87 (142)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCEEEEEE
Confidence 34677899999999999865 8 88885
No 50
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.02 E-value=2e+02 Score=24.57 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=57.2
Q ss_pred CCCCChhHHHHhhhhhcCCCeEEeecCChh---------HHhhhcCCCceEEEe-c-ChhhhhhccccChHHHHHHHhcc
Q 038099 36 NNLPSPQESVELMIKSLKATRVKIYDANPK---------ILKALKNIDIQVSIM-V-PNEIINNISLSSQTLSDQWVRTN 104 (250)
Q Consensus 36 ~nLPsp~~vv~l~lks~~i~~vriyd~d~~---------vL~AlagsgI~v~v~-v-pN~~l~~la~~s~~~A~~WV~~n 104 (250)
||...-.++++. +.++|.+++-+...... ..++++..|+++.+- . ..+.-.+.. .....+.+|++++
T Consensus 92 d~~~~g~~~~~~-l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 169 (265)
T cd01543 92 DNAAIGRMAAEH-FLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWE-EEQEELAQWLQSL 169 (265)
T ss_pred CHHHHHHHHHHH-HHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHH-HHHHHHHHHHhcC
Confidence 455566778888 77889888887743321 345677777765211 0 000001111 2235677888775
Q ss_pred cccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCC---CeEEcC
Q 038099 105 VLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGAR---KIKVGT 158 (250)
Q Consensus 105 V~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~---~IKVST 158 (250)
+ +++.|.+.|+... ..+.++|++.|+. +|+|.+
T Consensus 170 -----~--~~~ai~~~~d~~a--------------~g~~~~l~~~g~~vp~di~vig 205 (265)
T cd01543 170 -----P--KPVGIFACTDARA--------------RQLLEACRRAGIAVPEEVAVLG 205 (265)
T ss_pred -----C--CCcEEEecChHHH--------------HHHHHHHHHhCCCCCCceEEEe
Confidence 1 2457777776542 2256788888884 377653
No 51
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=30.26 E-value=75 Score=23.21 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=38.8
Q ss_pred ChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhhh
Q 038099 40 SPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIINN 88 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~~ 88 (250)
.+.+.+++ |...+++-+=.-.--+...+.|...||++..+ +..++..
T Consensus 41 ~~~~~~~~-l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~-~~~~i~~ 87 (94)
T PF02579_consen 41 GGDKIAKF-LAEEGVDVLICGGIGEGAFRALKEAGIKVYQG-AGGDIEE 87 (94)
T ss_dssp HSTHHHHH-HHHTTESEEEESCSCHHHHHHHHHTTSEEEES-TSSBHHH
T ss_pred cchhHHHH-HHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc-CCCCHHH
Confidence 35678888 77799998888888999999999999999998 5455543
No 52
>COG4086 Predicted secreted protein [Function unknown]
Probab=29.97 E-value=1.4e+02 Score=28.23 Aligned_cols=101 Identities=25% Similarity=0.334 Sum_probs=51.8
Q ss_pred CCCCCCChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcccccCCCCcc
Q 038099 34 LGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTNVLPYLPGTK 113 (250)
Q Consensus 34 ~g~nLPsp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~nV~p~~p~t~ 113 (250)
+|..| |.++-.++ +|..|.+.=+. .-+.|.-.-+|+-+..+....+...+..--+-|.|+.+++-
T Consensus 41 lG~~l-se~qk~~~-lke~gvd~~s~-------------~~~~Vt~~E~~~y~~~v~~~~~~~sq~~Sca~Vt~~~~~sG 105 (299)
T COG4086 41 LGEDL-SETQKQQL-LKEMGVDPDSA-------------DTKIVTAEEENEYLGEVTGRRQIGSQIYSCAKVTPTEEGSG 105 (299)
T ss_pred eCccc-cHHHHHHH-HHHhCCCcccc-------------eeEEEeccchhHHHHhhcccccccceeeeeeeeeecCCCCc
Confidence 45555 44555888 99999852110 11223333344444444311222222223345777776542
Q ss_pred EEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCC--eEEcCcccc
Q 038099 114 IRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK--IKVGTPSAM 162 (250)
Q Consensus 114 I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~--IKVST~~s~ 162 (250)
++ +-+| ++ ..+-|-| ..+||..+|.++ |+|+.|+.-
T Consensus 106 l~-V~v~-nI---------~~vt~eM--YanAL~TaGi~~a~V~VtaP~pv 143 (299)
T COG4086 106 LR-VEVG-NI---------TVVTPEM--YANALVTAGIEDAKVTVTAPFPV 143 (299)
T ss_pred eE-EEee-eE---------EEECHHH--HHHHHHhcCCCCceEEEecCccC
Confidence 21 2223 11 2233444 468999999988 888887753
No 53
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=29.84 E-value=72 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=28.4
Q ss_pred HHHHhhhhhcCCCeEEee----cCChhHHhhhcCCCceEEEe
Q 038099 43 ESVELMIKSLKATRVKIY----DANPKILKALKNIDIQVSIM 80 (250)
Q Consensus 43 ~vv~l~lks~~i~~vriy----d~d~~vL~AlagsgI~v~v~ 80 (250)
.+++. .++.||.+|+|+ ..-..+|+||..+|++|..=
T Consensus 171 ~aakk-a~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~I 211 (233)
T PTZ00090 171 NIAKK-CRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQI 211 (233)
T ss_pred HHHHH-HHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEEE
Confidence 34555 678999999998 33455999999999998643
No 54
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=29.29 E-value=72 Score=26.67 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=28.6
Q ss_pred hhHHHHhhhhhcCCCeEEeec----------CCh---hHHhhhcCCCceEE
Q 038099 41 PQESVELMIKSLKATRVKIYD----------ANP---KILKALKNIDIQVS 78 (250)
Q Consensus 41 p~~vv~l~lks~~i~~vriyd----------~d~---~vL~AlagsgI~v~ 78 (250)
++++++. .++.||+.|+++- +-| ..|+||+.+|+++.
T Consensus 59 ae~~~~~-~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 59 AEKAAED-AKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHH-HHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 4567777 8899999998873 222 49999999999974
No 55
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=28.98 E-value=70 Score=25.41 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=26.2
Q ss_pred hHHHHhhhhhcCCCeEEeec----CCh-hHHhhhcCCCceEE
Q 038099 42 QESVELMIKSLKATRVKIYD----ANP-KILKALKNIDIQVS 78 (250)
Q Consensus 42 ~~vv~l~lks~~i~~vriyd----~d~-~vL~AlagsgI~v~ 78 (250)
+++.+. +++.||+.|+|+= +.. .+|++|+.+|+++.
T Consensus 50 ~~~~~~-~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~ 90 (110)
T PF00411_consen 50 EKIAKK-AKELGIKTVRVKIKGFGPGREAALKALKKSGLKIV 90 (110)
T ss_dssp HHHHHH-HHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEE
T ss_pred HHHHHH-HHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEE
Confidence 344455 6788999999983 333 58999999998864
No 56
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=28.72 E-value=53 Score=25.84 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=65.3
Q ss_pred HHhhhhhcCCCeEEeecCCh----------hHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcccccCCCCccE
Q 038099 45 VELMIKSLKATRVKIYDANP----------KILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTNVLPYLPGTKI 114 (250)
Q Consensus 45 v~l~lks~~i~~vriyd~d~----------~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~nV~p~~p~t~I 114 (250)
|+. |.++|.+++-+...++ ...+|++..|++.........-..- ........|+++. .|
T Consensus 1 ~~~-L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~----~p---- 69 (160)
T PF13377_consen 1 VDY-LIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSE--DAREAQLLWLRRL----RP---- 69 (160)
T ss_dssp HHH-HHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHH--HHHHHHHHHHHTC----SS----
T ss_pred ChH-HHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcch--hHHHHHHHHHhcC----CC----
Confidence 345 6677888888776332 1567888999986443322111110 0112233488766 22
Q ss_pred EEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCC--C-eEEcCccccccccccCCCCCcccCCcch---hhhHHHH
Q 038099 115 RYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGAR--K-IKVGTPSAMDVLQSSFPPSNGTFRSDIS---ESVMRPM 188 (250)
Q Consensus 115 ~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~--~-IKVST~~s~~iL~~s~PPSag~F~~~~~---~~~m~pi 188 (250)
+.|.++|+... .-+..+|.+.|+. + +.|-+--....+ ....|.-.+++.+.. ...++-+
T Consensus 70 daii~~~~~~a--------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~-~~~~p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 70 DAIICSNDRLA--------------LGVLRALRELGIRVPQDISVVSFDDSPLL-EFFSPPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp SEEEESSHHHH--------------HHHHHHHHHTTSCTTTTSEEEEESSSGHH-HCSSSTSEEEEE-HHHHHHHHHHHH
T ss_pred cEEEEcCHHHH--------------HHHHHHHHHcCCcccccccEEEecCcHHH-HHHcCCCceecCCHHHHHHHHHHHH
Confidence 38888887642 2356788899983 3 777653322333 333344455555542 2344555
Q ss_pred HHHHh
Q 038099 189 LHFLN 193 (250)
Q Consensus 189 l~FL~ 193 (250)
++-++
T Consensus 135 ~~~i~ 139 (160)
T PF13377_consen 135 LDRIE 139 (160)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 55554
No 57
>PRK09989 hypothetical protein; Provisional
Probab=27.61 E-value=1e+02 Score=27.23 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=41.3
Q ss_pred cceeeecCCCCCCCChhHHHHhhhhhcCCCeEEe---ecCC-hhHHhhhcCCCceEEEe
Q 038099 26 KVGVCYGQLGNNLPSPQESVELMIKSLKATRVKI---YDAN-PKILKALKNIDIQVSIM 80 (250)
Q Consensus 26 ~iGVnyG~~g~nLPsp~~vv~l~lks~~i~~vri---yd~d-~~vL~AlagsgI~v~v~ 80 (250)
...+|+.++-..+| -.+.++. +++.|++.|-| ++-+ .++.+.++..|+++...
T Consensus 3 ~~~~~~~~~~~~~~-l~~~l~~-~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~ 59 (258)
T PRK09989 3 RFAANLSMMFTEVP-FIERFAA-ARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALF 59 (258)
T ss_pred ceeeehhhhhcCCC-HHHHHHH-HHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEe
Confidence 35689999888874 5578888 89999999998 3444 34677788999998863
No 58
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=26.97 E-value=44 Score=26.54 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.3
Q ss_pred CccchhhHHHHHHHHHHHHcC-C--CC-eEEcC
Q 038099 130 SIWPNLVPAMRKIRKSLKTLG-A--RK-IKVGT 158 (250)
Q Consensus 130 ~~~~~lvPAM~Ni~~AL~~~g-L--~~-IKVST 158 (250)
++....--+++||..+|+++| . ++ +|++.
T Consensus 31 d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tv 63 (114)
T cd06152 31 DLEEEIDQAFDNVELALKAAGGKGWEQVYKVNS 63 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHEEEEEE
Confidence 356678889999999999999 5 45 88773
No 59
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=26.41 E-value=50 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=23.3
Q ss_pred CccchhhHHHHHHHHHHHHcCC--CC-eEEcC
Q 038099 130 SIWPNLVPAMRKIRKSLKTLGA--RK-IKVGT 158 (250)
Q Consensus 130 ~~~~~lvPAM~Ni~~AL~~~gL--~~-IKVST 158 (250)
++....--+++||.+.|+++|. ++ +|++.
T Consensus 40 ~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~ 71 (121)
T PF01042_consen 40 DIEEQTRQALDNIERILAAAGASLDDVVKVTV 71 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEE
T ss_pred CHHHHHHHHHHhhhhhhhcCCCcceeEeeeee
Confidence 4456788899999999999995 56 77773
No 60
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=26.32 E-value=41 Score=26.89 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=23.9
Q ss_pred CccchhhHHHHHHHHHHHHcCC--CC-eEEcC
Q 038099 130 SIWPNLVPAMRKIRKSLKTLGA--RK-IKVGT 158 (250)
Q Consensus 130 ~~~~~lvPAM~Ni~~AL~~~gL--~~-IKVST 158 (250)
+......-+|+||...|+++|. ++ +|++.
T Consensus 38 d~~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~v 69 (126)
T cd06151 38 DTETQTISVLKRIETILQSQGLTMGDVVKMRV 69 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 4456789999999999999995 55 88874
No 61
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.24 E-value=1.4e+02 Score=28.92 Aligned_cols=118 Identities=12% Similarity=0.244 Sum_probs=60.4
Q ss_pred ceeeecCCCCCCCChhHHHHhhhhh----cCCCeEEeec-----CChhHHhhhcCCC-c--eEEEecC--hh-hhhhccc
Q 038099 27 VGVCYGQLGNNLPSPQESVELMIKS----LKATRVKIYD-----ANPKILKALKNID-I--QVSIMVP--NE-IINNISL 91 (250)
Q Consensus 27 iGVnyG~~g~nLPsp~~vv~l~lks----~~i~~vriyd-----~d~~vL~Alagsg-I--~v~v~vp--N~-~l~~la~ 91 (250)
+|.|.+..|.+++...+..+| ++. .++.++|+.- -++++|++++..+ + .+.+++. ++ .|..+.
T Consensus 199 ~~~~~~~yg~d~~~~~~l~~L-l~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~M~- 276 (439)
T PRK14328 199 LGQNVNSYGKDLEEKIDFADL-LRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCEHIHLPVQSGSNRILKKMN- 276 (439)
T ss_pred eccccCcCCcCCCCCcCHHHH-HHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHhCC-
Confidence 466655555555543345556 543 3567899764 3568999998775 2 3444432 33 355553
Q ss_pred cChHHHHHHHhc--ccccCCCCccEE-EEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCCeEEc
Q 038099 92 SSQTLSDQWVRT--NVLPYLPGTKIR-YLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVG 157 (250)
Q Consensus 92 ~s~~~A~~WV~~--nV~p~~p~t~I~-~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~IKVS 157 (250)
.. -..+.|.+. .+....|+..|. .+.+|- ++.. .--++..-+-+.+.+++.+.+.
T Consensus 277 R~-~~~~~~~~~i~~lr~~~~~i~i~~d~IvG~---PgET-------~ed~~~tl~~i~~l~~~~~~~~ 334 (439)
T PRK14328 277 RH-YTREYYLELVEKIKSNIPDVAITTDIIVGF---PGET-------EEDFEETLDLVKEVRYDSAFTF 334 (439)
T ss_pred CC-CCHHHHHHHHHHHHHhCCCCEEEEEEEEEC---CCCC-------HHHHHHHHHHHHhcCCCcccce
Confidence 22 222333322 123335666664 678884 2211 1223444455566666554333
No 62
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=26.23 E-value=76 Score=32.50 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=64.9
Q ss_pred ceeeecCCCCCCCChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhh--hhhcc---------ccChH
Q 038099 27 VGVCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEI--INNIS---------LSSQT 95 (250)
Q Consensus 27 iGVnyG~~g~nLPsp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~--l~~la---------~~s~~ 95 (250)
|=+-|||.| +.|++. |+++|++ +.+-|.|++..+.++.-|.++..|=+.+. +.+.. ..+-.
T Consensus 404 II~G~Gr~G------~~va~~-L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~ 475 (621)
T PRK03562 404 IIAGFGRFG------QIVGRL-LLSSGVK-MTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP 475 (621)
T ss_pred EEEecChHH------HHHHHH-HHhCCCC-EEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH
Confidence 346678877 457888 9998885 66669999999988888888877754322 22111 01222
Q ss_pred HHHHHHhcccccCCCCccEEEEeecccc----cc--CCCCCccchhhHHHHHHHHHHHHcCCC
Q 038099 96 LSDQWVRTNVLPYLPGTKIRYLLVGNEI----LS--LPDKSIWPNLVPAMRKIRKSLKTLGAR 152 (250)
Q Consensus 96 ~A~~WV~~nV~p~~p~t~I~~I~VGNEv----l~--~~~~~~~~~lvPAM~Ni~~AL~~~gL~ 152 (250)
..+.=+-..+..++|+.+|-..+ .++. +. +.+.-.....-++.+--..+|...|..
T Consensus 476 ~~n~~i~~~ar~~~p~~~iiaRa-~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~lg~~ 537 (621)
T PRK03562 476 QTSLQLVELVKEHFPHLQIIARA-RDVDHYIRLRQAGVEKPERETFEGALKSGRLVLESLGLG 537 (621)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEE-CCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHHcCCC
Confidence 33333444555667877663322 2211 11 111111223445555556666666654
No 63
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=25.73 E-value=93 Score=23.13 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHHHhhhhhcCCC----eEEeecCChhHHhhhcCCCceEEEecCh
Q 038099 43 ESVELMIKSLKAT----RVKIYDANPKILKALKNIDIQVSIMVPN 83 (250)
Q Consensus 43 ~vv~l~lks~~i~----~vriyd~d~~vL~AlagsgI~v~v~vpN 83 (250)
...++ |+++||. .-|+++-.+.++..++.-.|+++|-.|+
T Consensus 21 gTa~~-L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 21 GTAKF-LREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHH-HHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECCC
Confidence 45778 8889985 2346666778999999999999998885
No 64
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.61 E-value=1.9e+02 Score=28.33 Aligned_cols=118 Identities=13% Similarity=0.350 Sum_probs=60.8
Q ss_pred ceeeecCCCCCCCChhHHHHhhhh---h-cCCCeEEeecCCh-----hHHhhhcCCC---ceEEEec--Ch-hhhhhccc
Q 038099 27 VGVCYGQLGNNLPSPQESVELMIK---S-LKATRVKIYDANP-----KILKALKNID---IQVSIMV--PN-EIINNISL 91 (250)
Q Consensus 27 iGVnyG~~g~nLPsp~~vv~l~lk---s-~~i~~vriyd~d~-----~vL~Alagsg---I~v~v~v--pN-~~l~~la~ 91 (250)
+|.+.+..|.++|...+..+| ++ + .++.++|+...+| +++++++..+ -.+.+++ .+ +.+..+.
T Consensus 207 ~g~~~~~yG~d~~~~~~l~~L-l~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~m~- 284 (459)
T PRK14338 207 LGQIVDSYGHDLPGRPDLADL-LEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPHINLPVQAGDDEVLKRMR- 284 (459)
T ss_pred eeecCCCcccccCChHHHHHH-HHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccceecCcccCCHHHHHhcc-
Confidence 355545555566544445555 54 3 3677888765444 6888888754 2233433 33 3455553
Q ss_pred cChHHHHHHHh--cccccCCCCccEE-EEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCCeEEc
Q 038099 92 SSQTLSDQWVR--TNVLPYLPGTKIR-YLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARKIKVG 157 (250)
Q Consensus 92 ~s~~~A~~WV~--~nV~p~~p~t~I~-~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~IKVS 157 (250)
.. -..+.|.+ +.+....|+..|. .+.+|- ++.. .--+++...-+.+.+.+.+.+.
T Consensus 285 R~-~t~e~~~~~i~~lr~~~pgi~i~~d~IvG~---PgET-------~ed~~~ti~~l~~l~~~~v~i~ 342 (459)
T PRK14338 285 RG-YTVARYRELIARIREAIPDVSLTTDIIVGH---PGET-------EEQFQRTYDLLEEIRFDKVHIA 342 (459)
T ss_pred CC-CCHHHHHHHHHHHHHhCCCCEEEEEEEEEC---CCCC-------HHHHHHHHHHHHHcCCCEeEEE
Confidence 21 12222221 1223335776665 477883 3211 1234555566677788666554
No 65
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=25.31 E-value=1e+02 Score=21.63 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=21.2
Q ss_pred eeecC--CCCCCCChhHHHHhh--hhhcCC--CeEEeecC
Q 038099 29 VCYGQ--LGNNLPSPQESVELM--IKSLKA--TRVKIYDA 62 (250)
Q Consensus 29 VnyG~--~g~nLPsp~~vv~l~--lks~~i--~~vriyd~ 62 (250)
||||- ..+..++--|.+-++ .+..++ .++.+|||
T Consensus 3 vclGLGsf~~~~~a~~QLA~ll~l~~~l~~~~~~v~~yDP 42 (56)
T PF07985_consen 3 VCLGLGSFSSSRSARYQLALLLLLKEELSIPRDQVSIYDP 42 (56)
T ss_pred EEEEecCccccccHHHHHHHHHHHHHHhCCCCCcEEEECC
Confidence 56663 344566666665541 245667 79999986
No 66
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=25.06 E-value=87 Score=28.74 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=29.2
Q ss_pred CCChhHHHHhhhhhcCCCeEEee-cCChhHHhhhcCCCce
Q 038099 38 LPSPQESVELMIKSLKATRVKIY-DANPKILKALKNIDIQ 76 (250)
Q Consensus 38 LPsp~~vv~l~lks~~i~~vriy-d~d~~vL~AlagsgI~ 76 (250)
..--.++++- ||.-|| +|-+| |+|++-++|-+.+|-+
T Consensus 110 ~~~l~~~v~~-L~~~Gi-rVSLFiD~d~~qi~aa~~~gA~ 147 (243)
T COG0854 110 LDKLRDAVRR-LKNAGI-RVSLFIDPDPEQIEAAAEVGAP 147 (243)
T ss_pred hhhHHHHHHH-HHhCCC-eEEEEeCCCHHHHHHHHHhCCC
Confidence 4445678888 888888 68888 9999999988888744
No 67
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=24.83 E-value=1.2e+02 Score=22.47 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=36.4
Q ss_pred hhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhh
Q 038099 41 PQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIIN 87 (250)
Q Consensus 41 p~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~ 87 (250)
..+++++ |++.+++-|=.=.--+..++.|...||++..+.. +.+.
T Consensus 52 ~~~~~~~-l~~~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~-~~i~ 96 (103)
T cd00851 52 GGKAAEF-LADEGVDVVIVGGIGPRALNKLRNAGIKVYKGAE-GTVE 96 (103)
T ss_pred chHHHHH-HHHcCCCEEEeCCCCcCHHHHHHHCCCEEEEcCC-CCHH
Confidence 4688888 8888988877767788899999999999988776 3443
No 68
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=24.67 E-value=30 Score=33.06 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=17.3
Q ss_pred ccccChHHHHHHHhcccccCC
Q 038099 89 ISLSSQTLSDQWVRTNVLPYL 109 (250)
Q Consensus 89 la~~s~~~A~~WV~~nV~p~~ 109 (250)
++..|+-.|-+||++||..|=
T Consensus 184 ~Gl~Dq~~AL~WV~~nI~~FG 204 (535)
T PF00135_consen 184 YGLLDQRLALKWVQDNIAAFG 204 (535)
T ss_dssp HHHHHHHHHHHHHHHHGGGGT
T ss_pred hhhhhhHHHHHHHHhhhhhcc
Confidence 333478899999999999994
No 69
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=23.83 E-value=1e+02 Score=24.48 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=33.0
Q ss_pred hhHHHHhhhhh-cCC--CeEEe--ecCChhHHhhhcCCCceEEEecCh
Q 038099 41 PQESVELMIKS-LKA--TRVKI--YDANPKILKALKNIDIQVSIMVPN 83 (250)
Q Consensus 41 p~~vv~l~lks-~~i--~~vri--yd~d~~vL~AlagsgI~v~v~vpN 83 (250)
.+...++ |++ +|| ++||+ .+-++.++..+.+-.|.++|-.|+
T Consensus 33 T~gTa~~-L~~~~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 33 TGTTGLL-IQEATGLTVNRMKSGPLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred echHHHH-HHHhhCCcEEEEecCCCCchhHHHHHHHcCceeEEEEcCC
Confidence 4556778 887 776 45666 677888999999999999998886
No 70
>PRK08105 flavodoxin; Provisional
Probab=23.65 E-value=4e+02 Score=21.87 Aligned_cols=111 Identities=19% Similarity=0.277 Sum_probs=61.5
Q ss_pred cceeeecCCCCCC-CChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCC-CceEEEecChh---hhhhccccChHHHHHH
Q 038099 26 KVGVCYGQLGNNL-PSPQESVELMIKSLKATRVKIYDANPKILKALKNI-DIQVSIMVPNE---IINNISLSSQTLSDQW 100 (250)
Q Consensus 26 ~iGVnyG~~g~nL-Psp~~vv~l~lks~~i~~vriyd~d~~vL~Alags-gI~v~v~vpN~---~l~~la~~s~~~A~~W 100 (250)
.|+|=||...-|- ==++++.+. +++.|++ +++.+.+. +..+... .-.+++.++.. +.|. +...--.|
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~-l~~~g~~-~~~~~~~~--~~~~~~~~~~~vi~~~sT~G~Ge~p~----~~~~f~~~ 74 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAI-LTAQGHE-VTLFEDPE--LSDWQPYQDELVLVVTSTTGQGDLPD----SIVPLFQA 74 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHH-HHhCCCc-eEEechhh--CCchhcccCCeEEEEECCCCCCCCCh----hHHHHHHH
Confidence 5789999875552 224444455 5666654 55554432 2333221 12344444432 4442 22333456
Q ss_pred HhcccccCCCCccEEEEeeccccccCCCCCccchhhHHHHHHHHHHHHcCCCC
Q 038099 101 VRTNVLPYLPGTKIRYLLVGNEILSLPDKSIWPNLVPAMRKIRKSLKTLGARK 153 (250)
Q Consensus 101 V~~nV~p~~p~t~I~~I~VGNEvl~~~~~~~~~~lvPAM~Ni~~AL~~~gL~~ 153 (250)
+++. .+.+.+.++.-...|+. .+ ..---+++.+++.|.+.|-..
T Consensus 75 l~~~-~~~l~~~~~avfGlGds-------~Y-~~fc~~~~~ld~~l~~lGa~~ 118 (149)
T PRK08105 75 LKDT-AGYQPNLRYGVIALGDS-------SY-DNFCGAGKQFDALLQEQGAKR 118 (149)
T ss_pred HHhc-CcccCCCEEEEEeeecC-------CH-HHHHHHHHHHHHHHHHCCCeE
Confidence 6653 45666666655555552 23 456678999999999999865
No 71
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=23.55 E-value=77 Score=23.68 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCC---eEEcCccccccccccCCCCCcccCCcchhhhHHHHHHHHhhcCCcceeccCC
Q 038099 141 KIRKSLKTLGARK---IKVGTPSAMDVLQSSFPPSNGTFRSDISESVMRPMLHFLNRTKSFFFVDAYT 205 (250)
Q Consensus 141 Ni~~AL~~~gL~~---IKVST~~s~~iL~~s~PPSag~F~~~~~~~~m~pil~FL~~tgSPf~vNvYP 205 (250)
.|+..|.++.-.. +...++.+.-+ +..-+|+.++. ..++.+++-+...|.|+-+.+|+
T Consensus 11 tL~~~L~~Wa~~aGw~l~W~~~~dy~i------~~~~~~~gsf~-~Av~~l~~~~~~~~~~l~~~~y~ 71 (84)
T PF10671_consen 11 TLREALERWAKQAGWTLVWDAPKDYPI------DAPATFSGSFE-DAVKQLFSAYNSAGYPLQVCFYQ 71 (84)
T ss_dssp BHHHHHHHHHHCTT-EEEE-SSS--B--------CCCCC-E-HH-HHHHHHHHHHGGGTEEEEEETTE
T ss_pred cHHHHHHHHHHHCCCEEEecCCCCEEe------cCceEecCcHH-HHHHHHHHHHHhCCCCeEEEEee
Confidence 3566666554322 55566554333 44556666665 67889999999999999999987
No 72
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.35 E-value=74 Score=25.24 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=23.3
Q ss_pred CccchhhHHHHHHHHHHHHcCCC-------C-eEEcC
Q 038099 130 SIWPNLVPAMRKIRKSLKTLGAR-------K-IKVGT 158 (250)
Q Consensus 130 ~~~~~lvPAM~Ni~~AL~~~gL~-------~-IKVST 158 (250)
......--+|+||...|+++|.+ + +|+++
T Consensus 33 d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~v 69 (114)
T cd06153 33 DVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKV 69 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEE
Confidence 34567888999999999999987 4 77763
No 73
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.34 E-value=1.1e+02 Score=23.49 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCChhHHHHhhhhhcCCC--eEEe-ecCChhHHhhhcCCCceEEEecCh
Q 038099 37 NLPSPQESVELMIKSLKAT--RVKI-YDANPKILKALKNIDIQVSIMVPN 83 (250)
Q Consensus 37 nLPsp~~vv~l~lks~~i~--~vri-yd~d~~vL~AlagsgI~v~v~vpN 83 (250)
++=..+...++ |+++|+. .|+. .+.++.++..+++-.++++|.+|+
T Consensus 28 ~l~aT~gT~~~-l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 28 KLVATEGTAKY-LQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred EEEEchHHHHH-HHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC
Confidence 33334456777 8888875 2322 256788888888888998888875
No 74
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=22.97 E-value=1.9e+02 Score=26.68 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHh
Q 038099 38 LPSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVR 102 (250)
Q Consensus 38 LPsp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~ 102 (250)
-|--+.|.+- |+.+||+.|+| |++|+...+.-...+| ++ .-++|..
T Consensus 178 yP~~d~vi~~-l~~~~~~~v~L---------------~PlMlvAG~Ha~nDMa-sd--dedswk~ 223 (265)
T COG4822 178 YPLVDTVIEY-LRKNGIKEVHL---------------IPLMLVAGDHAKNDMA-SD--DEDSWKN 223 (265)
T ss_pred CCcHHHHHHH-HHHcCCceEEE---------------eeeEEeechhhhhhhc-cc--chHHHHH
Confidence 4667777887 78888888877 6899999999999998 54 2356754
No 75
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.52 E-value=92 Score=31.69 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=65.0
Q ss_pred eeecCCCCCCCChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChh-h-hhhccc---------cChHHH
Q 038099 29 VCYGQLGNNLPSPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNE-I-INNISL---------SSQTLS 97 (250)
Q Consensus 29 VnyG~~g~nLPsp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~-~-l~~la~---------~s~~~A 97 (250)
+-||+.| +.+++. |++.|++ +-+-|.||+..+.++.-|.++..|=+-+ + +++... .+-...
T Consensus 406 ~G~Gr~G------~~va~~-L~~~g~~-vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~ 477 (601)
T PRK03659 406 VGFGRFG------QVIGRL-LMANKMR-ITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPED 477 (601)
T ss_pred ecCchHH------HHHHHH-HHhCCCC-EEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH
Confidence 4467766 467888 8999986 5566999999999988888887774432 2 221110 011122
Q ss_pred HHHHhcccccCCCCccEEEEeecc---cccc--CCCCCccchhhHHHHHHHHHHHHcCCCC
Q 038099 98 DQWVRTNVLPYLPGTKIRYLLVGN---EILS--LPDKSIWPNLVPAMRKIRKSLKTLGARK 153 (250)
Q Consensus 98 ~~WV~~nV~p~~p~t~I~~I~VGN---Evl~--~~~~~~~~~lvPAM~Ni~~AL~~~gL~~ 153 (250)
+.=+-..+..+.|+.+|-..+--. |.+. +.+.-....+-.+++=-.++|.+.|+..
T Consensus 478 n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~lg~~~ 538 (601)
T PRK03659 478 TMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHP 538 (601)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHHcCCCH
Confidence 222333345566777664433221 1121 1111112334556666777777777753
No 76
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=21.99 E-value=1.2e+02 Score=28.03 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=76.5
Q ss_pred ChhHHHHhhhhhcCCCeEEeecCChhHHhhhcCCCceEEEecChhhhhhccccChHHHHHHHhcccccCCCCccEEEEee
Q 038099 40 SPQESVELMIKSLKATRVKIYDANPKILKALKNIDIQVSIMVPNEIINNISLSSQTLSDQWVRTNVLPYLPGTKIRYLLV 119 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~d~~vL~AlagsgI~v~v~vpN~~l~~la~~s~~~A~~WV~~nV~p~~p~t~I~~I~V 119 (250)
-+.|++.+ |.++||..-|.=+.| .|.. +.|+. ++-..|-.|++.|=.|.-+.+++.-+-=
T Consensus 32 eANemlAl-L~~~gI~A~K~~~~~---------g~~~--l~Ve~--------~~fa~Av~iL~~~GlPr~~f~~l~d~Fp 91 (246)
T COG4669 32 EANEMLAL-LMSHGINAEKKADKD---------GGTS--LLVEE--------SDFAEAVEILNQNGLPRKKFTTLGDIFP 91 (246)
T ss_pred HHHHHHHH-HHHcCCcceeeccCC---------CceE--EEEcH--------HHHHHHHHHHHhcCCCCCCCCcHHHhCC
Confidence 36789999 999999999983222 2222 55554 3335789999999999888777743333
Q ss_pred ccccccCCCCCccchhhHHH-HHHHHHHHHc-CC-CC-eEEcCcccccccccc-CCCCCccc---CCcchh-hhHHHHHH
Q 038099 120 GNEILSLPDKSIWPNLVPAM-RKIRKSLKTL-GA-RK-IKVGTPSAMDVLQSS-FPPSNGTF---RSDISE-SVMRPMLH 190 (250)
Q Consensus 120 GNEvl~~~~~~~~~~lvPAM-~Ni~~AL~~~-gL-~~-IKVST~~s~~iL~~s-~PPSag~F---~~~~~~-~~m~pil~ 190 (250)
++--.++.. +....+.-+. |.|-+.|... |. +. +.|+=|++ |..+.. -|=|+..| ++|..- .++..|=+
T Consensus 92 ~dgLVsSP~-eEkaR~~~~~eQ~le~tLs~mDGVi~ArV~I~lp~~-~~~g~~~~P~saSVfIky~~~~nl~~~v~~IK~ 169 (246)
T COG4669 92 KDGLVSSPT-EEKARLNYAKEQQLEQTLSKMDGVISARVHISLPED-DDEGKNALPSSASVFIKYSPDVNLSIYVSQIKR 169 (246)
T ss_pred cccccCCcH-HHHHHHHHHHHHHHHHHHHhcCceEEEEEEEEcCCC-CccCCCCCCceeEEEEEecCCCChhHhHHHHHH
Confidence 333222211 1112222222 3355555543 22 22 44555554 566553 45556665 555521 22333434
Q ss_pred HHhhcCCcceeccCCCCcC
Q 038099 191 FLNRTKSFFFVDAYTFFPW 209 (250)
Q Consensus 191 FL~~tgSPf~vNvYPyfay 209 (250)
| ..|--|=..|
T Consensus 170 L--------V~nSv~gL~Y 180 (246)
T COG4669 170 L--------VANSVPGLQY 180 (246)
T ss_pred H--------HHhccCCCch
Confidence 4 4566777777
No 77
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=21.46 E-value=78 Score=26.82 Aligned_cols=55 Identities=13% Similarity=0.336 Sum_probs=22.4
Q ss_pred HHhhhcCC-CceEEEecChhhhhhccccChHHHHHHHhcc--cccCCCCc---cEEEEeecccccc
Q 038099 66 ILKALKNI-DIQVSIMVPNEIINNISLSSQTLSDQWVRTN--VLPYLPGT---KIRYLLVGNEILS 125 (250)
Q Consensus 66 vL~Alags-gI~v~v~vpN~~l~~la~~s~~~A~~WV~~n--V~p~~p~t---~I~~I~VGNEvl~ 125 (250)
|++.+.|+ |..|..--..+++..+. .+..|.+.. +++|+|.. .+|.++||+|++.
T Consensus 43 ViKp~~g~~G~gV~~i~~~~~~~~~l-----~~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~ 103 (190)
T PF08443_consen 43 VIKPLRGSSGRGVFLINSPDELESLL-----DAFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVG 103 (190)
T ss_dssp EEE-SB-------EEEESHCHHHHHH-----H-----TTT-EEEE----SS---EEEEEETTEEEE
T ss_pred EEeeCCCCCCCEEEEecCHHHHHHHH-----HHHHhccCcceEeccccCCCCcEEEEEEECCEEEE
Confidence 44455443 44444432323444432 122344444 47899875 5999999999985
No 78
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=21.24 E-value=1.9e+02 Score=22.45 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=30.9
Q ss_pred hHHHHhhhhhcCCCeEEee---c-CChhHHhhhcC-CCceEEEecCh
Q 038099 42 QESVELMIKSLKATRVKIY---D-ANPKILKALKN-IDIQVSIMVPN 83 (250)
Q Consensus 42 ~~vv~l~lks~~i~~vriy---d-~d~~vL~Alag-sgI~v~v~vpN 83 (250)
+...++ |+++||.--++. + -+|+++..+++ -.|+++|-+|+
T Consensus 32 ~gTa~~-L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 32 GGTSRV-LADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred cHHHHH-HHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 456778 888887544433 3 46889999999 89999998886
No 79
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=21.23 E-value=1.8e+02 Score=23.24 Aligned_cols=44 Identities=34% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCChhHHHHhhhhhcCCCeEEeecCC-----hhHHhhhcCCCceEEEecC
Q 038099 38 LPSPQESVELMIKSLKATRVKIYDAN-----PKILKALKNIDIQVSIMVP 82 (250)
Q Consensus 38 LPsp~~vv~l~lks~~i~~vriyd~d-----~~vL~AlagsgI~v~v~vp 82 (250)
-.++++.++. .++.|++.+-|-|-+ ++..+.....||++.+|+-
T Consensus 15 ~~~~~e~v~~-A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E 63 (175)
T PF02811_consen 15 KDSPEEYVEQ-AKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVE 63 (175)
T ss_dssp SSSHHHHHHH-HHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCHHHHHHH-HHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEe
Confidence 3489999999 999999999998864 4566666678999999874
No 80
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.21 E-value=1.8e+02 Score=23.42 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=39.9
Q ss_pred CCCCCChhHHHHhhhhhcCCCeEEee----------cCChhHHhhhcCCCceEEEecC----hhhhhhcc
Q 038099 35 GNNLPSPQESVELMIKSLKATRVKIY----------DANPKILKALKNIDIQVSIMVP----NEIINNIS 90 (250)
Q Consensus 35 g~nLPsp~~vv~l~lks~~i~~vriy----------d~d~~vL~AlagsgI~v~v~vp----N~~l~~la 90 (250)
|-+.|+++++++- +...|+++|-+- +-=++.+.++++.+.++.+|-| .+++..++
T Consensus 52 ~~~~p~~~eaL~~-l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~ 120 (127)
T cd03412 52 GIEVDTPEEALAK-LAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVA 120 (127)
T ss_pred CCCCCCHHHHHHH-HHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHH
Confidence 4568999999999 999999998763 2224467777777778888776 44555444
No 81
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.86 E-value=2.8e+02 Score=24.53 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=47.2
Q ss_pred ChhHHHHhhhhhcCCCeEEeecCC----hhHHhhhcC--CCceEEEecChhhhhhccccChHHHHHHHhcccccCCCCcc
Q 038099 40 SPQESVELMIKSLKATRVKIYDAN----PKILKALKN--IDIQVSIMVPNEIINNISLSSQTLSDQWVRTNVLPYLPGTK 113 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~d----~~vL~Alag--sgI~v~v~vpN~~l~~la~~s~~~A~~WV~~nV~p~~p~t~ 113 (250)
+|+|+.+- .+.|.+-||+|=++ +.-++++++ .++++|-+=. -+.+.+.+|++.-.
T Consensus 110 TptEi~~A--~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGG---------V~~~N~~~~l~aGa-------- 170 (204)
T TIGR01182 110 TPSEIMLA--LELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGG---------INLANVRDYLAAPN-------- 170 (204)
T ss_pred CHHHHHHH--HHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCC---------CCHHHHHHHHhCCC--------
Confidence 68998886 57899999999766 788999997 5666653211 25577888888632
Q ss_pred EEEEeecccccc
Q 038099 114 IRYLLVGNEILS 125 (250)
Q Consensus 114 I~~I~VGNEvl~ 125 (250)
..+.+|+..++
T Consensus 171 -~~vg~Gs~L~~ 181 (204)
T TIGR01182 171 -VACGGGSWLVP 181 (204)
T ss_pred -EEEEEChhhcC
Confidence 35667777664
No 82
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.65 E-value=2.4e+02 Score=24.85 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.5
Q ss_pred ChhHHHHhhhhhcCCCeEEeecCC----hhHHhhhcC--CCceEEEecChhhhhhccccChHHHHHHHhcc
Q 038099 40 SPQESVELMIKSLKATRVKIYDAN----PKILKALKN--IDIQVSIMVPNEIINNISLSSQTLSDQWVRTN 104 (250)
Q Consensus 40 sp~~vv~l~lks~~i~~vriyd~d----~~vL~Alag--sgI~v~v~vpN~~l~~la~~s~~~A~~WV~~n 104 (250)
+|+|+.+. .+.|.+-||+|=++ +..+++|++ .++++|.+=. -+.+...+|++.-
T Consensus 110 TptEi~~A--~~~G~~~vK~FPA~~~GG~~~ik~l~~p~p~~~~~ptGG---------V~~~N~~~~l~ag 169 (196)
T PF01081_consen 110 TPTEIMQA--LEAGADIVKLFPAGALGGPSYIKALRGPFPDLPFMPTGG---------VNPDNLAEYLKAG 169 (196)
T ss_dssp SHHHHHHH--HHTT-SEEEETTTTTTTHHHHHHHHHTTTTT-EEEEBSS-----------TTTHHHHHTST
T ss_pred CHHHHHHH--HHCCCCEEEEecchhcCcHHHHHHHhccCCCCeEEEcCC---------CCHHHHHHHHhCC
Confidence 68998886 57899999999766 789999998 4677654311 2445677888763
Done!