BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038101
(660 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 185 LQDLVQDGA--SLLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSSEIGGN 236
L+ V+ G+ LLF GPPGVGKTT +AR + +++ + ++ S E G N
Sbjct: 37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN 91
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 195 LLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSSEIG 234
LLF GPPG GKT+ I +AR + +Y V+ ++ S + G
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRG 89
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 155 HRISAIRNRKGAIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIA 213
+ I I+ + + LT R G + N L ++DG L+ +GP G GKTT +R IA
Sbjct: 3 NNIEVIKMVEVKLENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 59
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 155 HRISAIRNRKGAIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIA 213
+ I I+ + + LT R G + N L ++DG L+ +GP G GKTT +R IA
Sbjct: 2 NNIEVIKMVEVKLENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 19/86 (22%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVP 253
+L +GPPGVGKT + R +A + RV + S G + G+G AR
Sbjct: 66 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR----- 111
Query: 254 NSEMQHKVLIEAVENHMPQVIVIDEI 279
+ L E + H P ++ IDEI
Sbjct: 112 -----VRDLFETAKRHAPCIVFIDEI 132
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 19/86 (22%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVP 253
+L +GPPGVGKT + R +A + RV + S G + G+G AR
Sbjct: 75 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR----- 120
Query: 254 NSEMQHKVLIEAVENHMPQVIVIDEI 279
+ L E + H P ++ IDEI
Sbjct: 121 -----VRDLFETAKRHAPCIVFIDEI 141
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 173 RVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229
+ G+ ++G L + G S + P GVGKTT A LA KK ++ T
Sbjct: 74 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPT 130
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 414
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 173 RVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229
+ G+ ++G L + G S + P GVGKTT A LA KK ++ T
Sbjct: 17 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPT 73
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 413
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 173 RVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229
+ G+ ++G L + G S + P GVGKTT A LA KK ++ T
Sbjct: 16 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPT 72
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
- P2 Form
Length = 415
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 173 RVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229
+ G+ ++G L + G S + P GVGKTT A LA KK ++ T
Sbjct: 18 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPT 74
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 180 GSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIA 213
G ++DL ++DG L+ +GP G GKTT +R IA
Sbjct: 17 GDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIA 53
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 19/86 (22%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVP 253
+L +GPPGVGKT + R +A + RV + S G + G+G AR
Sbjct: 75 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR----- 120
Query: 254 NSEMQHKVLIEAVENHMPQVIVIDEI 279
+ L E + H P ++ IDEI
Sbjct: 121 -----VRDLFETAKRHAPCIVFIDEI 141
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 19/86 (22%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVP 253
+L +GPPGVGKT + R +A + RV + S G + G+G AR
Sbjct: 51 GVLLVGPPGVGKTHLARAVA------GEARVPFITAS---GSDFVEMFVGVGAAR----- 96
Query: 254 NSEMQHKVLIEAVENHMPQVIVIDEI 279
+ L E + H P ++ IDEI
Sbjct: 97 -----VRDLFETAKRHAPCIVFIDEI 117
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 180 GSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDY 220
G+ NL A + F GP G GKTT+I E+ L DY
Sbjct: 14 GTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDY 54
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 164 KGAIIGLTCRVGRAVSGSANLLQDLVQDGASL----LFIGPPGVGKTTIIREIARVLAND 219
KG+++ L + + N + +DG+ + + GPPG+GKTT +A+ L D
Sbjct: 45 KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI 233
S++ GPPG GKTT+ IAR D ++ + EI
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEI 91
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDY 220
G L GPPGVGKT++ + IA+ L +
Sbjct: 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKF 136
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 20/125 (16%)
Query: 195 LLFIGPPGVGKTTIIREIARVL--ANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQV 252
+LF GPPG GKT+ I + + L + K R++ ++ S E G + I + N R+ V
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS--IVREKVKNFARLTV 118
Query: 253 PNSEMQHKVLIEAVENH-MP--QVIVIDEIGTKLEAMAASTIAQRGI-QLVATAHGVTIE 308
+EN+ P ++I++DE ++M A AQ + + + T GVT
Sbjct: 119 SKPSKHD------LENYPCPPYKIIILDEA----DSMTAD--AQSALRRTMETYSGVTRF 166
Query: 309 NLIMN 313
LI N
Sbjct: 167 CLICN 171
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDY 220
A + F GP G GKTT+I E+ L DY
Sbjct: 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230
++F+G G GKTT+ E R L ++YK + +DT
Sbjct: 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDY 220
A + F GP G GKTT+I E+ L DY
Sbjct: 23 AFITFEGPEGSGKTTVINEVYHRLVKDY 50
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIA 213
V+DG ++ +GP G GKTT +R IA
Sbjct: 26 VKDGEFMILLGPSGCGKTTTLRMIA 50
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLAN 218
++L IGP GVGKT I R +A+ LAN
Sbjct: 52 NILMIGPTGVGKTEIARRLAK-LAN 75
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLAN 218
++L IGP GVGKT I R +A+ LAN
Sbjct: 52 NILMIGPTGVGKTEIARRLAK-LAN 75
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLAN 218
++L IGP GVGKT I R +A+ LAN
Sbjct: 51 NILMIGPTGVGKTEIARRLAK-LAN 74
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLAN 218
++L IGP GVGKT I R +A+ LAN
Sbjct: 58 NILMIGPTGVGKTEIARRLAK-LAN 81
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMI 226
S +F+GP GVGKT + R +A + D + + I
Sbjct: 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRI 555
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 196 LFIGPPGVGKTTIIREIARVLAND------YKKRVMIVDTSSEIGG 235
+ IG PGVGKT I +A+ + N+ KRVM +D ++ G
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRG 250
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV 227
+ G + + PP GKTTI++EIA +A ++ + I+
Sbjct: 172 IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRII 210
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 196 LFIGPPGVGKTTIIREIARVLAND------YKKRVMIVDTSSEIGG 235
+ IG PGVGKT I +A+ + N+ KRVM +D ++ G
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRG 250
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIA 213
+ +G ++F+GP G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIA 213
+ +G ++F+GP G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIA 213
+ +G ++F+GP G GK+T++R IA
Sbjct: 26 IHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLAN 218
++L IGP GVGKT I R +A+ LAN
Sbjct: 52 NILMIGPTGVGKTEIARRLAK-LAN 75
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLAN 218
++L IGP GVGKT I R +A+ LAN
Sbjct: 52 NILXIGPTGVGKTEIARRLAK-LAN 75
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 199 GPPGVGKTTIIREIARVLAN-DYKKRVMIVDTSSEIGGN 236
GPPG GK+T I ++L +K V+ VD SS G
Sbjct: 81 GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGG 119
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 195 LLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSSEIG 234
LLF GPPG GKT +AR + +++ + ++ S E G
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 195 LLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSSEIG 234
LLF GPPG GKT +AR + +++ + ++ S E G
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 30/125 (24%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNAR--RMQ 251
+L +GPPG GKT + + +A G +P +G + M
Sbjct: 46 GVLLVGPPGTGKTLLAKAVA---------------------GEAHVPFFSMGGSSFIEMF 84
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIA-------QRGIQLVATAHG 304
V + + L E + P +I IDEI ++ AA + Q QL+A G
Sbjct: 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144
Query: 305 VTIEN 309
EN
Sbjct: 145 FGSEN 149
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 19/85 (22%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
LL GPPG GKT + R +A + + TS +G + AR MQ
Sbjct: 57 LLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ--- 113
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEI 279
P +I IDE+
Sbjct: 114 ----------------PSIIFIDEV 122
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS---SEIGGNGDIPHPGIGNARRMQ 251
+L GPPG GKT IAR +AN+ +++ S++ G
Sbjct: 241 ILLYGPPGTGKTL----IARAVANETGAFFFLINGPEIMSKLAG---------------- 280
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEI 279
SE + E E + P +I IDE+
Sbjct: 281 --ESESNLRKAFEEAEKNAPAIIFIDEL 306
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS---SEIGGNGDIPHPGIGNARRMQ 251
+L GPPG GKT IAR +AN+ +++ S++ G
Sbjct: 241 ILLYGPPGTGKTL----IARAVANETGAFFFLINGPEIMSKLAG---------------- 280
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEI 279
SE + E E + P +I IDE+
Sbjct: 281 --ESESNLRKAFEEAEKNAPAIIFIDEL 306
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVL 216
AI + + RA +G L+D + S LF+GP GVGKT + + +A L
Sbjct: 566 AIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
+L GPPG GKT +++ + AN K + V+ S + H +G R
Sbjct: 209 VLLYGPPGTGKTMLVKAV----ANSTKAAFIRVNGSEFV-------HKYLGEGPR----- 252
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEIGT 281
M V A EN P +I IDE+ +
Sbjct: 253 --MVRDVFRLARENA-PSIIFIDEVDS 276
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 31/153 (20%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
+L GPPG GK+ + + +A N + D S+ G
Sbjct: 48 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG------------------E 89
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEI----GTKLEAMAASTIAQR-GIQLVATAHGVTIEN 309
SE K L + + P +I IDEI G++ E S A+R + + GV ++N
Sbjct: 90 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDN 147
Query: 310 LIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTV 342
+L+ G N+ + A RR +K +
Sbjct: 148 ------DGILVLGATNIPWVLDSAIRRRFEKRI 174
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 31/153 (20%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
+L GPPG GK+ +A+ +A + +SS D+ +G + ++
Sbjct: 170 ILLFGPPGTGKSY----LAKAVATEANNSTFFSISSS------DLVSKWLGESEKLV--- 216
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEI----GTKLEAMAASTIAQR-GIQLVATAHGVTIEN 309
K L + + P +I IDEI G++ E S A+R + + GV ++N
Sbjct: 217 -----KNLFQLARENKPSIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDN 269
Query: 310 LIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTV 342
+L+ G N+ + A RR +K +
Sbjct: 270 ------DGILVLGATNIPWVLDSAIRRRFEKRI 296
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 185 LQDL---VQDGASLLFIGPPGVGKTTIIREIAR 214
LQD+ V G +L +GP G GK+TI+R + R
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM 225
AI + + RA +G L+D + S LF+GP GVGKT + + +A L + + +
Sbjct: 25 AIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAXIR 80
Query: 226 I 226
I
Sbjct: 81 I 81
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVL 216
AI + + RA +G L+D + S LF+GP GVGKT + + +A L
Sbjct: 22 AIRAVADAIRRARAG----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 68
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS---SEIGGNGDIPHPGIGNARRMQ 251
+L GPPG GKT IAR +AN+ +++ S++ G
Sbjct: 241 ILLYGPPGTGKTL----IARAVANETGAFFFLINGPEIMSKLAG---------------- 280
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEI 279
SE + E E + P +I IDE+
Sbjct: 281 --ESESNLRKAFEEAEKNAPAIIFIDEL 306
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS---SEIGGNGDIPHPGIGNARRMQ 251
+L GPPG GKT IAR +AN+ +++ S++ G
Sbjct: 241 ILLYGPPGTGKTL----IARAVANETGAFFFLINGPEIMSKLAG---------------- 280
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEI 279
SE + E E + P +I IDE+
Sbjct: 281 --ESESNLRKAFEEAEKNAPAIIFIDEL 306
>pdb|2XXA|A Chain A, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|C Chain C, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 433
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV 227
A +L G G GKTT + ++ + L +KK+V++V
Sbjct: 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 25/88 (28%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS---SEIGGNGDIPHPGIGNARRMQ 251
+L GPPG GKT IAR +AN+ +++ S++ G
Sbjct: 241 ILLYGPPGTGKTL----IARAVANETGAFFFLINGPEIMSKLAG---------------- 280
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEI 279
SE + E E + P +I IDE+
Sbjct: 281 --ESESNLRKAFEEAEKNAPAIIFIDEL 306
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 195 LLFIGPPGVGKTTIIREIARVLAN 218
+ GPPGVGKTT+I + + VL +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKS 27
>pdb|2J28|9 Chain 9, Model Of E. Coli Srp Bound To 70s Rncs
Length = 430
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV 227
A +L G G GKTT + ++ + L +KK+V++V
Sbjct: 100 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 134
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 25/89 (28%)
Query: 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS---SEIGGNGDIPHPGIGNARRM 250
+L GPPG GKT IAR +AN+ +++ S++ G
Sbjct: 240 GILLYGPPGTGKTL----IARAVANETGAFFFLINGPEIMSKLAG--------------- 280
Query: 251 QVPNSEMQHKVLIEAVENHMPQVIVIDEI 279
SE + E E + P +I IDE+
Sbjct: 281 ---ESESNLRKAFEEAEKNAPAIIFIDEL 306
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 21/88 (23%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNG-DIPHPGIGNARRMQ 251
A +L GPPG GKT + + +A +E G N + P + N M
Sbjct: 45 AGVLLAGPPGCGKTLLAKAVA-----------------NESGLNFISVKGPELLN---MY 84
Query: 252 VPNSEMQHKVLIEAVENHMPQVIVIDEI 279
V SE + + + +N P VI DE+
Sbjct: 85 VGESERAVRQVFQRAKNSAPCVIFFDEV 112
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 34/156 (21%)
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQV 252
+ +L GPPG GK+ +A+ +A + V +S D+ +G + ++
Sbjct: 61 SGILLYGPPGTGKSY----LAKAVATEANSTFFSVSSS-------DLVSKWMGESEKL-- 107
Query: 253 PNSEMQHKVLIEAVENHMPQVIVIDEI----GTKLEAMAASTIAQRGI--QLVATAHGVT 306
K L + P +I IDE+ GT+ E + A R I +L+ +GV
Sbjct: 108 ------VKQLFAMARENKPSIIFIDEVDALTGTRGEGESE---ASRRIKTELLVQMNGVG 158
Query: 307 IENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTV 342
N S +L+ G N+ + A RR ++ +
Sbjct: 159 ------NDSQGVLVLGATNIPWQLDSAIRRRFERRI 188
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYK 221
LL GPPG+GKTT+ IA L + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLR 67
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYK 221
LL GPPG+GKTT+ IA L + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLR 67
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYK 221
LL GPPG+GKTT+ IA L + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLR 67
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 187 DLVQDGASLLFIGPPGVGKTTIIREIARVL 216
+L +G ++ +GP G GKTT++R I+ +L
Sbjct: 25 NLEVNGEKVIILGPNGSGKTTLLRAISGLL 54
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 179 SGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS 231
S +N + ++Q SL+ GPPG GKT I L+ +K R+++ S+
Sbjct: 363 SSQSNAVSHVLQRPLSLI-QGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSN 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,373,282
Number of Sequences: 62578
Number of extensions: 647933
Number of successful extensions: 2132
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2077
Number of HSP's gapped (non-prelim): 86
length of query: 660
length of database: 14,973,337
effective HSP length: 105
effective length of query: 555
effective length of database: 8,402,647
effective search space: 4663469085
effective search space used: 4663469085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)