BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038101
(660 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3
SV=1
Length = 565
Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/561 (44%), Positives = 360/561 (64%), Gaps = 24/561 (4%)
Query: 75 ELGRLLALLPEEMRIRVSEHPELYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEH 134
+L +LL +LP +R + +H LIEVVMDLGR+P ARFP LS I+ +++
Sbjct: 6 DLEKLLEILPHFVREPLKQHSNRKNLIEVVMDLGRRPEARFPGNPEYLSQRSISWQDLDY 65
Query: 135 ATSQVGDFAVDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVSGSANLLQDLVQDGAS 194
+VG+F+ DNRAGI +TLHRIS++RNR+G+IIGLTCRVGRAV G+ ++++DL++ G S
Sbjct: 66 CVKKVGNFSGDNRAGIEKTLHRISSMRNREGSIIGLTCRVGRAVFGTISIIRDLLEQGDS 125
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
+L +G PGVGKTT +REIARVL+++ +KRV+I+DTS+EI G+GDIPHP IG ARRMQV
Sbjct: 126 ILLLGKPGVGKTTAVREIARVLSDEMEKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVAQ 185
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNP 314
++QH+V+IEAVENHMP+VI+IDEIGT+LEA+AA TIA+RG+QLV TAHG +E+LI NP
Sbjct: 186 PDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLESLIKNP 245
Query: 315 SLEMLIGGVQNVTLGDEEAHRRGVQKTVLERKGPSTFSCAVEIVSKTELRVHHSLEATVD 374
+L LIGG+Q VTLGD+EA RRG QK++LERK F A+EI + VH +E T+D
Sbjct: 246 TLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEKVEETID 305
Query: 375 AILSGRIPNVEIRRMQHDG-----SKETVEKEFFAETSSDEEDEMMVEDAMEVTEER--- 426
IL G P V+ R++Q +G + E + SS + ++ ++R
Sbjct: 306 QILQGHQPFVQKRQIQDNGRILIKCYPSQSTEVLSTNSSSLQKMSSLKQKTHFLQQREVK 365
Query: 427 -------------TGKIQFISEFPPNIGEDCWE-DGLLIRLYVYGILEATVVQLIKQLQM 472
T + P NI ++ + + LY Y + + +I L
Sbjct: 366 NKTFDLNKLENRDTSLLSTTINTPVNINNHSFQVEASIQYLYAYSLSWQHITSVISAL-- 423
Query: 473 DDAVQLTDNISEADALLALHSKLKKNSGIQAAAKSHDIPIYATKTSSLVQITKALRALID 532
D + LT I ++DA+LAL S++K+N+ ++ AKS I IY + S++ QIT+ALR +++
Sbjct: 424 DLPIILTKEIEKSDAILALRSQVKQNTKLRQIAKSRQIIIYTIQNSTVPQITRALRKILN 483
Query: 533 DHTGEFKDLRSEDKINLSEKIDALEEARVAIEQVVIPKGESVELLPRPSYILSIQIDLIR 592
+T + K +I AL+EA++AIE +++ + V+L PR +YI +Q +LI
Sbjct: 484 INTSSDLNWVKLCKSKKFYEIQALQEAKLAIEIIILNENSIVQLTPRSAYIRKMQHNLID 543
Query: 593 KYQLHYQRVGKEPDARLRILP 613
YQL + G+EP +LRI P
Sbjct: 544 NYQLRARSFGEEPYRKLRIYP 564
>sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3
SV=1
Length = 455
Score = 363 bits (933), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/453 (41%), Positives = 287/453 (63%), Gaps = 11/453 (2%)
Query: 73 DIELGRLLALLPEEMRIRVSEHPELYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHI 132
D +L L+ LP +R +++HP +LIE+V+DLGR+P ARF +G LS I+ I
Sbjct: 4 DEDLDNLIKNLPFLIRQNINQHPSKQKLIEIVIDLGRRPEARFTTGPEYLSQKVISWQDI 63
Query: 133 EHATSQVGDFAVDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVSGSANLLQDLVQDG 192
H T ++ F+ DNRAGI RTLHRIS IRNR+ I GLTCR+GRA+ G+ + ++DL++
Sbjct: 64 NHFTKRISKFSNDNRAGIERTLHRISCIRNRQFLINGLTCRIGRAIFGTISSVRDLLESQ 123
Query: 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQV 252
S+L +G PGVGKTTIIREIARVL+++ +KRV+IVDTS+EI G+ DIPH IG ARRMQV
Sbjct: 124 QSILLLGKPGVGKTTIIREIARVLSDEMEKRVVIVDTSNEIAGDSDIPHSAIGRARRMQV 183
Query: 253 PNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIM 312
+++QH+++IEAVENHMPQVIVIDEIGT+LEA+AA TIA++G+QLV T HG +ENLI
Sbjct: 184 ATTDLQHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLENLIK 243
Query: 313 NPSLEMLIGGVQNVTLGDEEAHRRGVQKTVLERKGPSTFSCAVEIVSKTELRVHHSLEAT 372
NP L LIGG+Q+VTL D+EA RRG QK+++ERK F A+EI ++ +H ++++
Sbjct: 244 NPPLSDLIGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWTIHEDIKSS 303
Query: 373 VDAILSGRIPNVEIRRMQHDGSKETVEKEFFAETSS--DEEDEMMVEDAMEVTEERTGKI 430
+D +L ++R + D K+ +T + + + + ++ T
Sbjct: 304 IDLLLRKSFTGTQVRELFLDKRTFIKYKKLQIDTFTLLKDSNSLKIQTINRSNNWFTRSQ 363
Query: 431 QFISEFPPNIGEDCWEDGLLIRLYVYGILEATVVQLIKQLQMDDAVQLTDNISEADALLA 490
+ + F + + C+ +++Y + + +++ +L+ LT + ++ ++
Sbjct: 364 KSLFYFQNSKAKKCF-------IFIYSLPSNLISEILNKLKFQYV--LTKELQKSSLIVG 414
Query: 491 LHSKLKKNSGIQAAAKSHDIPIYATKTSSLVQI 523
L +N ++ A+ IP+Y+ ++ QI
Sbjct: 415 SKVSLNQNFKLKKLAQQCSIPVYSVNKENIYQI 447
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3
SV=1
Length = 335
Score = 296 bits (759), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 146/319 (45%), Positives = 218/319 (68%)
Query: 75 ELGRLLALLPEEMRIRVSEHPELYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEH 134
+L L ++P + + +HP + L E+V+D GR+ R+ +L+ +IT H+
Sbjct: 6 DLRHFLPVVPRFVYKSLKKHPRKFGLTEIVLDNGRRAEGRWREKTENLTHKKITKKHLLR 65
Query: 135 ATSQVGDFAVDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVSGSANLLQDLVQDGAS 194
++G F DNRAGI +TLHRIS I+NR G I+GLT R+GR G +++DL++ S
Sbjct: 66 CIKKIGIFNEDNRAGIYQTLHRISCIKNRYGNIVGLTYRIGREFIGIGPIIRDLIESNQS 125
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
L IG PG+GKT+ IREI+R+L+N+ KRV+IVD+++EI G G PH G ARRM+V +
Sbjct: 126 TLLIGRPGIGKTSFIREISRILSNEIMKRVIIVDSANEISGEGCCPHISTGKARRMEVQS 185
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNP 314
QH+V+IEA+ENH P++I+IDEIGT+ E+ AA +I+QRGI+L+ +AH + NL NP
Sbjct: 186 INSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAHSSDLFNLAKNP 245
Query: 315 SLEMLIGGVQNVTLGDEEAHRRGVQKTVLERKGPSTFSCAVEIVSKTELRVHHSLEATVD 374
+L L+GG+++VTL D +A R +KT+LERKG S F+ +EI K ++V+ S+E ++D
Sbjct: 246 TLCKLVGGIESVTLSDTQAILRKTKKTILERKGCSCFNATIEINKKRTVKVYTSVEQSID 305
Query: 375 AILSGRIPNVEIRRMQHDG 393
AIL GR+ N +IR M+ +G
Sbjct: 306 AILEGRVNNSQIRSMKLNG 324
>sp|Q01367|SP3AA_BACSU Stage III sporulation protein AA OS=Bacillus subtilis (strain 168)
GN=spoIIIAA PE=4 SV=1
Length = 307
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 138/297 (46%), Gaps = 41/297 (13%)
Query: 82 LLPEEMRIRVSEHPE--LYELIEVVMDLGRKPLARFPSGD---FSLSDCQITVHHIEHAT 136
+LPE M+ +SE PE E+ EV + + R P+ G S + H I
Sbjct: 7 VLPESMKNALSEIPEQQWLEIEEVRIRINR-PVELIRRGQPVYLSYAGTAEDAHLILSRL 65
Query: 137 SQVGDFAVDN--RAGIS--RTLHRISA---IRNRKGAIIGL------TCRVGRAVSGSAN 183
S + ++ + G R HR+ + G + GL R+ R G A
Sbjct: 66 SNYSMYTLEEELKKGYVTIRGGHRVGLAGRVITENGGVKGLRDIASFNIRIARQKLGIAE 125
Query: 184 -LLQDLVQDGA-SLLFIGPPGVGKTTIIREIARVLANDYKKRVM-----IVDTSSEIGGN 236
LL L Q+ + L IGPP GKTT++R++AR L++ KK ++ IVD SEI G
Sbjct: 126 PLLPYLYQNSWLNTLIIGPPQTGKTTLLRDLAR-LSSTGKKNMLPVKTGIVDERSEIAGC 184
Query: 237 -GDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRG 295
IP G +R+ V ++ + + L+ + + P+V+++DEIG + A G
Sbjct: 185 LRGIPQHQFG--QRIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAG 242
Query: 296 IQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVLERKGPSTFS 352
+ ++ +AHG +I +L+ PSL+ L +E A R ++ + KGP T S
Sbjct: 243 VSVIVSAHGWSISDLMKRPSLK---------RLWEERAFDRYLELS--RAKGPGTVS 288
>sp|P40340|TBP7_YEAST Tat-binding homolog 7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YTA7 PE=1 SV=2
Length = 1379
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 21/105 (20%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPN 254
+LF GPPG GKT + R +A ++D +K + + DI +G A R
Sbjct: 450 VLFHGPPGTGKTLMARALAASCSSDERKITFFMRKGA------DILSKWVGEAER----- 498
Query: 255 SEMQHKVLIEAVENHMPQVIVIDEI-------GTKLEAMAASTIA 292
Q ++L E + H P +I DEI +K E + AS ++
Sbjct: 499 ---QLRLLFEEAKKHQPSIIFFDEIDGLAPVRSSKQEQIHASIVS 540
>sp|Q6ML73|LON1_BDEBA Lon protease 1 OS=Bdellovibrio bacteriovorus (strain ATCC 15356 /
DSM 50701 / NCIB 9529 / HD100) GN=lon1 PE=3 SV=1
Length = 793
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 190 QDGASLLFIGPPGVGKTTIIREIARVLANDY 220
Q G+ L+FIGPPGVGKT++ + IAR L Y
Sbjct: 345 QQGSILMFIGPPGVGKTSLGKSIARALGKKY 375
>sp|Q72JM6|LON2_THET2 Lon protease 2 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=lon2 PE=3 SV=1
Length = 804
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 187 DLVQDGASLLFIGPPGVGKTTIIREIARVLANDY 220
D V G LLF+GPPGVGKT+I + IA L Y
Sbjct: 350 DEVNKGPILLFVGPPGVGKTSIAKSIAEALGRKY 383
>sp|B3PN08|LON_MYCA5 Lon protease OS=Mycoplasma arthritidis (strain 158L3-1) GN=lon PE=3
SV=1
Length = 835
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 178 VSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-RVMIVDTSSEIGGN 236
V+ + N L+D V + L IGPPG GKTT+ + IA L + K + V SEI G+
Sbjct: 391 VNKTGNFLKDRVNNIPILTLIGPPGTGKTTLAKSIAEALGRQFVKISLGGVKDESEIRGH 450
Query: 237 -----GDIPHPGIGNARRMQVPN 254
G +P I ++ V N
Sbjct: 451 RRTYVGALPGKIISGIKKAGVSN 473
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster GN=RfC4
PE=2 SV=1
Length = 331
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 191 DGASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSSEIGGNGDIPHPGIGNARR 249
+ +++ GPPGVGKTT I+ +AR+L D YK+ V+ ++ S+E G D+ I +
Sbjct: 48 NAPNIIIAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERG--IDVVRNKIKMFAQ 105
Query: 250 MQVPNSEMQHKVLI 263
+V +HK++I
Sbjct: 106 QKVTLPRGRHKIVI 119
>sp|Q59HJ6|LONM_BOVIN Lon protease homolog, mitochondrial OS=Bos taurus GN=LONP1 PE=1
SV=1
Length = 961
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQ 251
G L F GPPGVGKT+I R IAR L +Y + +GG D+ I RR
Sbjct: 517 GKILCFYGPPGVGKTSIARSIARALNREYFR--------FSVGGMTDVAE--IKGHRRTY 566
Query: 252 VPNSEMQHKVL--IEAVENHMPQVIV--IDEIGTKLEAMAASTI 291
V M K++ ++ + P V++ +D+IG + +S +
Sbjct: 567 V--GAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSAL 608
>sp|Q924S5|LONM_RAT Lon protease homolog, mitochondrial OS=Rattus norvegicus GN=Lonp1
PE=2 SV=1
Length = 950
Score = 42.0 bits (97), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQ 251
G L F GPPGVGKT+I R IAR L +Y + +GG D+ I RR
Sbjct: 506 GKILCFHGPPGVGKTSIARSIARALGREYFR--------FSVGGMTDVAE--IKGHRRTY 555
Query: 252 VPNSEMQHKVL--IEAVENHMPQVIV--IDEIGTKLEAMAASTI 291
V M K++ ++ + P V++ +D+IG + +S +
Sbjct: 556 V--GAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSAL 597
>sp|Q8CGK3|LONM_MOUSE Lon protease homolog, mitochondrial OS=Mus musculus GN=Lonp1 PE=1
SV=2
Length = 949
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQ 251
G L F GPPGVGKT+I R IAR L +Y + +GG D+ I RR
Sbjct: 505 GKILCFHGPPGVGKTSIARSIARALGREYFR--------FSVGGMTDVAE--IKGHRRTY 554
Query: 252 VPNSEMQHKVL--IEAVENHMPQVIV--IDEIGTKLEAMAASTI 291
V M K++ ++ + P V++ +D+IG + +S +
Sbjct: 555 V--GAMPGKIIQCLKKTKTENPLVLIDEVDKIGRGYQGDPSSAL 596
>sp|P36776|LONM_HUMAN Lon protease homolog, mitochondrial OS=Homo sapiens GN=LONP1 PE=1
SV=2
Length = 959
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQ 251
G L F GPPGVGKT+I R IAR L +Y + +GG D+ I RR
Sbjct: 516 GKILCFYGPPGVGKTSIARSIARALNREYFR--------FSVGGMTDVAE--IKGHRRTY 565
Query: 252 VPNSEMQHKVL--IEAVENHMPQVIV--IDEIGTKLEAMAASTI 291
V M K++ ++ + P +++ +D+IG + +S +
Sbjct: 566 V--GAMPGKIIQCLKKTKTENPLILIDEVDKIGRGYQGDPSSAL 607
>sp|Q4UN57|CLPB_RICFE Chaperone protein ClpB OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=clpB PE=3 SV=2
Length = 858
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM 225
AI G++ V R+ +G +QD+ + S LF+GP GVGKT + + +A L +D + ++
Sbjct: 575 AIKGVSDAVRRSRAG----IQDINRPLGSFLFLGPTGVGKTELTKALASFLFDD-RNAIL 629
Query: 226 IVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVENHMPQVIVIDEI 279
+D S + + +R + P + Q VL EAV QVI+ DE+
Sbjct: 630 RIDMSEYMEKH--------AISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEV 678
>sp|A9GBF1|LON2_SORC5 Lon protease 2 OS=Sorangium cellulosum (strain So ce56) GN=lon2
PE=3 SV=1
Length = 804
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222
+ G LLFIGPPGVGKT++ + IAR + Y++
Sbjct: 358 KKGPILLFIGPPGVGKTSLGKSIARSMGRRYER 390
>sp|Q92HZ1|LON_RICCN Lon protease OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7)
GN=lon PE=3 SV=2
Length = 778
Score = 41.2 bits (95), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIG 245
G L IGPPGVGKT++++ IA + Y K + V +EI G+ G +P +G
Sbjct: 349 GPILCLIGPPGVGKTSLVKSIAEGMGRKYTKLALGGVRDEAEIRGHRKTYLGSMPGKILG 408
Query: 246 NARRMQVPNSEM 257
++++ N M
Sbjct: 409 QLKKVKTSNPVM 420
>sp|Q7S8C4|LONM_NEUCR Lon protease homolog, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=pim1 PE=3 SV=1
Length = 1107
Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 191 DGASLLFIGPPGVGKTTIIREIARVLANDY 220
+G L F+GPPGVGKT+I + IAR L Y
Sbjct: 586 EGKILCFVGPPGVGKTSIGKSIARALGRQY 615
>sp|Q92MK7|CLPB_RHIME Chaperone protein ClpB OS=Rhizobium meliloti (strain 1021) GN=clpB
PE=3 SV=1
Length = 868
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 174 VGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI 233
V RAV S LQD + S +F+GP GVGKT + + +AR L +D + +M +D S +
Sbjct: 582 VSRAVRRSRAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDD-ETALMRIDMSEYM 640
Query: 234 GGNGDIPHPGIGNARRMQVPNSEMQHK---VLIEAVENHMPQVIVIDEI 279
+ AR + P + ++ L E+V QV++ DEI
Sbjct: 641 EKH--------SVARLIGAPPGYVGYEEGGALTESVRRRPYQVVLFDEI 681
>sp|Q92JK8|CLPB_RICCN Chaperone protein ClpB OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=clpB PE=3 SV=1
Length = 857
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM 225
AI G++ V R+ +G +QD+ + S LF+GP GVGKT + + +A L +D + ++
Sbjct: 575 AIKGVSDAVRRSRAG----IQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDD-RNAIL 629
Query: 226 IVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVENHMPQVIVIDEI 279
+D S + + +R + P + Q VL EAV QVI+ DE+
Sbjct: 630 RIDMSEYMEKH--------AISRLIGAPPGYIGYDQGGVLTEAVRRRPYQVILFDEV 678
>sp|Q6MTF4|LON_MYCMS Lon protease OS=Mycoplasma mycoides subsp. mycoides SC (strain PG1)
GN=lon PE=3 SV=1
Length = 796
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIG 245
G + F+GPPGVGKT++ R IA L + K + V SEI G+ G +P I
Sbjct: 369 GPIITFVGPPGVGKTSLARSIAEALGKKFVKVSLGGVKDESEIRGHRKTYVGSMPGRIIQ 428
Query: 246 NARRMQVPN 254
+R +V N
Sbjct: 429 ALKRAKVKN 437
>sp|A9ETZ9|LON1_SORC5 Lon protease 1 OS=Sorangium cellulosum (strain So ce56) GN=lon1
PE=3 SV=1
Length = 811
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNAR 248
+ G LLF+GPPG GKT+I IAR L Y + +GG D I R
Sbjct: 366 ISRGPILLFLGPPGTGKTSIAESIARALGRKYVR--------VSLGGARD--EADIRGHR 415
Query: 249 RMQVPNSEMQHKVL--IEAVENHMPQVIVIDEI 279
R V M ++L I+ + + P VIV+DE+
Sbjct: 416 RTYV--GAMPGRILQGIKRIGSKNP-VIVLDEV 445
>sp|Q5PQY6|LONP2_DANRE Lon protease homolog 2, peroxisomal OS=Danio rerio GN=lonp2 PE=2
SV=1
Length = 840
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKK 222
G L F+GPPGVGKT++ R IAR L ++ +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSIARTLGREFHR 398
>sp|O14114|YEJJ_SCHPO Uncharacterized AAA domain-containing protein C31G5.19
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC31G5.19 PE=3 SV=1
Length = 1190
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNAR 248
+Q +LF GPPG GKT + R +A +++ KK S + D +G A
Sbjct: 297 MQPPRGVLFHGPPGTGKTLMARALAAACSSENKK------VSFYMRKGADCLSKWVGEAE 350
Query: 249 RMQVPNSEMQHKVLIEAVENHMPQVIVIDEI-------GTKLEAMAASTIA 292
R Q ++L E ++ P +I DEI +K E + AS ++
Sbjct: 351 R--------QLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVS 393
>sp|Q9ZD92|LON_RICPR Lon protease OS=Rickettsia prowazekii (strain Madrid E) GN=lon PE=3
SV=1
Length = 784
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIG 245
G L IGPPGVGKT++++ IA + Y K + V +EI G+ G +P +G
Sbjct: 349 GPILCLIGPPGVGKTSLVKSIAEGMGRKYTKFSLGGVRDEAEIRGHRKTYLGSMPGKILG 408
Query: 246 NARRMQVPNSEM 257
++++ N M
Sbjct: 409 QLKKIKTSNPVM 420
>sp|Q68WS8|LON_RICTY Lon protease OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=lon PE=3 SV=1
Length = 784
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIG 245
G L IGPPGVGKT++++ IA + Y K + V +EI G+ G +P +G
Sbjct: 349 GPILCLIGPPGVGKTSLVKSIAEGMGRKYAKFSLGGVRDEAEIRGHRKTYLGSMPGKILG 408
Query: 246 NARRMQVPNSEM 257
++++ N M
Sbjct: 409 QLKKVKTSNPVM 420
>sp|Q4ULN0|LON_RICFE Lon protease OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
GN=lon PE=3 SV=1
Length = 778
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIG 245
G L IGPPGVGKT++++ IA + Y K + V +EI G+ G P +G
Sbjct: 349 GPILCLIGPPGVGKTSLVKSIAEGMGRKYTKFALGGVRDEAEIRGHRKTYLGSTPGKILG 408
Query: 246 NARRMQVPNSEM 257
++++ N M
Sbjct: 409 QLKKVKTSNPVM 420
>sp|B1GZQ6|LON_UNCTG Lon protease OS=Uncultured termite group 1 bacterium phylotype
Rs-D17 GN=lon PE=3 SV=1
Length = 802
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDY 220
G L FIGPPGVGKT+I + +AR L ++
Sbjct: 360 GPILCFIGPPGVGKTSIAKSVARSLGRNF 388
>sp|P36775|LONM_YEAST Lon protease homolog, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PIM1 PE=1 SV=2
Length = 1133
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 191 DGASLLFIGPPGVGKTTIIREIARVLANDY 220
DG + F+GPPGVGKT+I + IAR L +
Sbjct: 624 DGKIICFVGPPGVGKTSIGKSIARALNRKF 653
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 39.7 bits (91), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 195 LLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSSEIG 234
LLF GPPG GKT+ I+ IAR L D Y + V+ ++ S + G
Sbjct: 60 LLFYGPPGTGKTSTIQAIARKLYGDNYSRMVLELNASDDRG 100
>sp|Q7CU92|CLPB_AGRT5 Chaperone protein ClpB OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=clpB PE=3 SV=2
Length = 874
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 113 ARFPSGDFSLSDCQITVHHIEHATSQVGDFAVDNR-AGISRTLHRI-----SAIRNRKGA 166
AR SG S+ +T +I H S+ VD G L R+ ++ + A
Sbjct: 519 ARDSSGAGSMVQEVVTPDNIAHVVSRWTGIPVDKMLEGQREKLLRMEDELAKSVVGQGEA 578
Query: 167 IIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMI 226
+ ++ V R+ +G LQD + S +F+GP GVGKT + + +AR L +D + M+
Sbjct: 579 VQAVSKAVRRSRAG----LQDPNRPIGSFIFLGPTGVGKTELTKSLARFLFDD--ETAMV 632
Query: 227 VDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHK---VLIEAVENHMPQVIVIDEI 279
SE + AR + P + ++ L EAV QV++ DEI
Sbjct: 633 RLDMSEYMEKHSV-------ARLIGAPPGYVGYEEGGALTEAVRRRPYQVVLFDEI 681
>sp|Q68XR2|CLPB_RICTY Chaperone protein ClpB OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=clpB PE=3 SV=1
Length = 858
Score = 39.7 bits (91), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM 225
AI G++ V R+ SG +QD+ + S LF+GP GVGKT + + +A L +D + ++
Sbjct: 575 AIKGISDAVRRSRSG----IQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDD-RNALL 629
Query: 226 IVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVENHMPQVIVIDEI 279
+D S + + +R + P + Q VL E+V QVI+ DE+
Sbjct: 630 RIDMSEYMEKHSI--------SRLIGAPPGYIGYDQGGVLTESVRRRPYQVILFDEV 678
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 39.7 bits (91), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 180 GSANLLQDLVQDGA--SLLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSSEIG 234
G ++ V++G LLF GPPG GKTT I +AR + +Y+ ++ ++ S E G
Sbjct: 36 GVITTIKKFVEEGKLPHLLFHGPPGTGKTTTIIAVARQIYGKNYRNMILELNASDERG 93
>sp|A9B5N1|LON1_HERA2 Lon protease 1 OS=Herpetosiphon aurantiacus (strain ATCC 23779 /
DSM 785) GN=lon1 PE=3 SV=1
Length = 815
Score = 39.3 bits (90), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIG 245
GA L F+GPPGVGKT++ R IA+ + ++ + + V +EI G+ G +P I
Sbjct: 363 GAILCFVGPPGVGKTSLGRSIAKAMNREFVRLSLGGVHDEAEIRGHRRTYIGAMPGSLIQ 422
Query: 246 NARRMQVPN 254
RR V N
Sbjct: 423 AIRRSGVNN 431
>sp|Q6CNR9|LONM_KLULA Lon protease homolog, mitochondrial OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PIM1 PE=3 SV=1
Length = 1111
Score = 39.3 bits (90), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 191 DGASLLFIGPPGVGKTTIIREIARVLANDY 220
DG + F+GPPGVGKT+I + IAR L +
Sbjct: 594 DGKIICFVGPPGVGKTSIGKSIARSLNRQF 623
>sp|A8XFM8|LONM_CAEBR Lon protease homolog, mitochondrial OS=Caenorhabditis briggsae
GN=CBG12802 PE=3 SV=3
Length = 960
Score = 39.3 bits (90), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 181 SANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIP 240
+ NLL+ V G L F GPPGVGKT+I + IA L +Y + +GG D+
Sbjct: 488 AVNLLRKSV-GGKILCFHGPPGVGKTSIAKSIANALNREYFR--------FSVGGMTDVA 538
Query: 241 HPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIV--IDEIG 280
I RR V + ++ V+ P V++ +D+IG
Sbjct: 539 E--IKGHRRTYVGAMPGKMIQCMKKVKTENPLVLIDEVDKIG 578
>sp|Q9ZEA9|CLPB_RICPR Chaperone protein ClpB OS=Rickettsia prowazekii (strain Madrid E)
GN=clpB PE=3 SV=1
Length = 858
Score = 39.3 bits (90), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 16/117 (13%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM 225
AI G++ V R+ SG +QD+ + S LF+GP GVGKT + + +A L +D + ++
Sbjct: 575 AIKGVSDAVRRSRSG----IQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDD-RNALL 629
Query: 226 IVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVENHMPQVIVIDEI 279
+D S + + +R + P + Q VL E+V QVI+ DE+
Sbjct: 630 RIDMSEYMEKHSI--------SRLIGAPPGYIGYDQGGVLTESVRRRPYQVILFDEV 678
>sp|Q9RXG4|LON_DEIRA Lon protease OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=lon PE=3 SV=1
Length = 821
Score = 39.3 bits (90), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDY 220
V G L+F GPPGVGKT+I + IA+ L Y
Sbjct: 357 VNKGPILVFTGPPGVGKTSIAQSIAKSLGRKY 388
>sp|Q59185|LON1_BORBU Lon protease 1 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 /
CIP 102532 / DSM 4680) GN=lon1 PE=3 SV=1
Length = 806
Score = 39.3 bits (90), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 190 QDGASLLFIGPPGVGKTTIIREIARVLANDY 220
Q GA +L +GPPGVGKT+I IA+VL +
Sbjct: 380 QKGAIILLVGPPGVGKTSIGAAIAKVLRTKF 410
>sp|Q2TAF8|LONP2_XENLA Lon protease homolog 2, peroxisomal OS=Xenopus laevis GN=lonp2 PE=2
SV=1
Length = 856
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKK 222
G L F+GPPGVGKT++ R IA+ L ++ +
Sbjct: 372 GPILCFVGPPGVGKTSVGRSIAKTLGREFHR 402
>sp|Q7KUT2|LONM_DROME Lon protease homolog, mitochondrial OS=Drosophila melanogaster
GN=CG8798 PE=2 SV=1
Length = 1024
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDY 220
G L F GPPGVGKT+I + IAR L +Y
Sbjct: 557 GKILCFHGPPGVGKTSIAKSIARALNREY 585
>sp|Q73T66|CLPB_MYCPA Chaperone protein ClpB OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=clpB PE=3 SV=1
Length = 848
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 162 NRKGAIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYK 221
+K A+ ++ V RA +G A D + S +F+GP GVGKT + + +A L +D
Sbjct: 574 GQKRAVQAVSDAVRRARAGVA----DPNRPTGSFMFLGPTGVGKTELAKALADFLFDD-- 627
Query: 222 KRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVENHMPQVIVIDE 278
KR M+ SE G + AR + P + Q L EAV VI+ DE
Sbjct: 628 KRAMVRIDMSEYGEKHSV-------ARLVGAPPGYIGYDQGGQLTEAVRRRPYTVILFDE 680
Query: 279 I 279
I
Sbjct: 681 I 681
>sp|O69733|ECCA1_MYCTU ESX-1 secretion system protein EccA1 OS=Mycobacterium tuberculosis
GN=eccA1 PE=1 SV=1
Length = 573
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 144 VDNRAGISRTLHRISAIRNRKGAIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGV 203
+D + G++R ++I R L RV RA G + Q ++F GPPG
Sbjct: 290 LDRQIGLTRVKNQIERYR-----AATLMARV-RAAKG-----MKVAQPSKHMIFTGPPGT 338
Query: 204 GKTTIIREIARVLAN 218
GKTTI R +A +LA
Sbjct: 339 GKTTIARVVANILAG 353
>sp|A4XJL4|LON_CALS8 Lon protease OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=lon PE=3 SV=1
Length = 774
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDY 220
G L +GPPGVGKT+I + IAR L +Y
Sbjct: 350 GPILCLVGPPGVGKTSIAKSIARALNRNY 378
>sp|A7ZEJ3|LON_CAMC1 Lon protease OS=Campylobacter concisus (strain 13826) GN=lon PE=3
SV=1
Length = 805
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNAR 248
V +GA L F GPPGVGKT++ IA+ L KR ++ +GG D+ + R
Sbjct: 356 VNNGAILCFAGPPGVGKTSLANSIAKAL-----KRELV---RIALGGLEDVNE--LRGHR 405
Query: 249 RMQV---PNSEMQHKVLIEAVENHMPQVIVIDEI 279
R + P +Q LIEA M V+V+DEI
Sbjct: 406 RTYIGAMPGRIVQG--LIEA--KQMNPVVVLDEI 435
>sp|P36773|LON1_MYXXA Lon protease 1 OS=Myxococcus xanthus GN=lon1 PE=2 SV=1
Length = 817
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 185 LQDLVQD--GASLLFIGPPGVGKTTIIREIARVLANDY 220
+Q LV+ G L F+GPPGVGKT++ R IAR +
Sbjct: 352 VQQLVKKLKGPVLCFVGPPGVGKTSLARSIARATGRKF 389
>sp|Q1RGR1|CLPB_RICBR Chaperone protein ClpB OS=Rickettsia bellii (strain RML369-C)
GN=clpB PE=3 SV=1
Length = 858
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 174 VGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI 233
V AV S +QD+ + S LF+GP GVGKT + + +A L +D + ++ +D S +
Sbjct: 579 VSDAVRRSRAGIQDINRPLGSFLFLGPTGVGKTELTKALAGFLFDD-RNAILRIDMSEYM 637
Query: 234 GGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVENHMPQVIVIDEI 279
+ +R + P + Q VL EAV QVI+ DE+
Sbjct: 638 EKH--------AISRLIGAPPGYVGYDQGGVLTEAVRRRPYQVILFDEV 678
>sp|Q6N1H2|CLPB_RHOPA Chaperone protein ClpB OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=clpB PE=3 SV=1
Length = 879
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 166 AIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM 225
A+ ++ V RA +G LQD + S +F+GP GVGKT + + +A L +D V
Sbjct: 577 AVHAVSTAVRRARAG----LQDPNRPMGSFMFLGPTGVGKTELTKALAEYLFDDETAMVR 632
Query: 226 IVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHK---VLIEAVENHMPQVIVIDEI 279
I SE + AR + P + + VL EAV QVI+ DEI
Sbjct: 633 I--DMSEFMEKHSV-------ARLIGAPPGYVGYDEGGVLTEAVRRRPYQVILFDEI 680
>sp|Q6C0L7|LONP2_YARLI Lon protease homolog 2, peroxisomal OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YALI0F23595g PE=3 SV=1
Length = 952
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSSEIGGN-----GDIPHPGIGNAR 248
LL +GPPGVGKT++ + +AR L +++ + V SEI G+ G +P I R
Sbjct: 489 LLLVGPPGVGKTSLAKSVARALGRKFQRLSLGGVRDESEIRGHRRTYVGAMPGLFIQGLR 548
Query: 249 RMQVPN 254
++ V N
Sbjct: 549 QVGVNN 554
>sp|Q3SX23|LONP2_BOVIN Lon protease homolog 2, peroxisomal OS=Bos taurus GN=LONP2 PE=2
SV=1
Length = 852
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 192 GASLLFIGPPGVGKTTIIREIARVLANDYKK 222
G L F+GPPGVGKT++ R +A+ L ++ +
Sbjct: 368 GPILCFVGPPGVGKTSVGRSVAKTLGREFHR 398
>sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial OS=Caenorhabditis elegans
GN=C34B2.6 PE=3 SV=1
Length = 971
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 181 SANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIP 240
+ NLL+ + G L F GPPGVGKT+I + IA L +Y + +GG D+
Sbjct: 495 AVNLLRKSI-GGKILCFHGPPGVGKTSIAKSIATALNREYFR--------FSVGGMTDVA 545
Query: 241 HPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIV--IDEIG 280
I RR V + ++ V+ P V++ +D+IG
Sbjct: 546 E--IKGHRRTYVGAMPGKMIQCMKKVKTENPLVLIDEVDKIG 585
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,112,852
Number of Sequences: 539616
Number of extensions: 9760583
Number of successful extensions: 45722
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 302
Number of HSP's that attempted gapping in prelim test: 45184
Number of HSP's gapped (non-prelim): 821
length of query: 660
length of database: 191,569,459
effective HSP length: 124
effective length of query: 536
effective length of database: 124,657,075
effective search space: 66816192200
effective search space used: 66816192200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)