Query 038101
Match_columns 660
No_of_seqs 484 out of 3176
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3854 SpoIIIAA ncharacterize 100.0 8.6E-48 1.9E-52 385.3 11.7 280 74-356 1-303 (308)
2 COG1126 GlnQ ABC-type polar am 100.0 1.7E-32 3.6E-37 273.9 17.8 154 164-327 2-218 (240)
3 COG1120 FepC ABC-type cobalami 100.0 1.4E-30 3.1E-35 267.7 19.5 159 164-327 2-221 (258)
4 COG3842 PotA ABC-type spermidi 100.0 2.1E-30 4.5E-35 276.6 14.5 167 163-349 4-231 (352)
5 COG1125 OpuBA ABC-type proline 100.0 2.2E-30 4.9E-35 263.6 13.2 174 164-353 1-234 (309)
6 COG1116 TauB ABC-type nitrate/ 100.0 7.3E-29 1.6E-33 252.4 18.1 153 164-321 3-207 (248)
7 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.4E-29 1.6E-33 254.3 18.1 155 163-322 3-216 (254)
8 COG3839 MalK ABC-type sugar tr 100.0 3.1E-29 6.7E-34 266.4 15.8 167 164-350 3-229 (338)
9 COG1118 CysA ABC-type sulfate/ 100.0 1E-28 2.2E-33 256.9 15.3 166 164-350 2-233 (345)
10 COG1131 CcmA ABC-type multidru 100.0 2.4E-28 5.2E-33 255.6 17.7 159 164-327 4-219 (293)
11 PRK13537 nodulation ABC transp 100.0 3.8E-28 8.3E-33 255.0 18.6 161 161-326 4-219 (306)
12 PRK13536 nodulation factor exp 100.0 1.4E-27 3E-32 254.7 19.0 162 160-326 37-253 (340)
13 COG4555 NatA ABC-type Na+ tran 100.0 2.1E-28 4.6E-33 242.3 11.5 159 164-326 1-214 (245)
14 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-27 2.6E-32 242.3 17.0 161 162-327 6-228 (263)
15 COG1135 AbcC ABC-type metal io 100.0 7.2E-28 1.6E-32 250.9 15.8 163 164-326 1-223 (339)
16 COG1136 SalX ABC-type antimicr 100.0 1.7E-27 3.6E-32 240.9 17.7 157 165-323 2-220 (226)
17 PRK11432 fbpC ferric transport 100.0 1.9E-27 4.1E-32 254.7 18.1 159 164-327 6-219 (351)
18 PRK11650 ugpC glycerol-3-phosp 99.9 3E-27 6.6E-32 253.5 19.0 159 164-327 3-217 (356)
19 TIGR03265 PhnT2 putative 2-ami 99.9 6.3E-27 1.4E-31 250.8 20.2 159 164-327 4-217 (353)
20 TIGR03258 PhnT 2-aminoethylpho 99.9 7.2E-27 1.6E-31 251.2 20.3 159 164-327 5-221 (362)
21 TIGR01288 nodI ATP-binding ABC 99.9 6E-27 1.3E-31 244.9 17.8 160 162-326 2-216 (303)
22 COG3638 ABC-type phosphate/pho 99.9 3.4E-27 7.3E-32 238.4 15.2 159 164-327 3-230 (258)
23 PRK09452 potA putrescine/sperm 99.9 8E-27 1.7E-31 252.0 19.1 163 160-327 10-227 (375)
24 cd03259 ABC_Carb_Solutes_like 99.9 7.6E-27 1.7E-31 230.7 16.2 156 165-325 1-211 (213)
25 COG4152 ABC-type uncharacteriz 99.9 5.8E-27 1.3E-31 237.6 15.3 156 164-324 2-209 (300)
26 cd03261 ABC_Org_Solvent_Resist 99.9 1.1E-26 2.3E-31 233.2 17.0 157 165-326 1-218 (235)
27 TIGR00960 3a0501s02 Type II (G 99.9 1E-26 2.2E-31 230.3 15.7 156 165-323 2-216 (216)
28 PRK11607 potG putrescine trans 99.9 1.7E-26 3.7E-31 249.5 18.9 160 163-327 18-232 (377)
29 cd03265 ABC_DrrA DrrA is the A 99.9 1.4E-26 3E-31 230.2 16.6 156 165-325 1-212 (220)
30 COG1124 DppF ABC-type dipeptid 99.9 1.5E-26 3.2E-31 234.6 16.9 164 163-327 2-224 (252)
31 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 9.7E-27 2.1E-31 230.4 15.1 156 165-322 1-217 (218)
32 cd03293 ABC_NrtD_SsuB_transpor 99.9 2E-26 4.3E-31 229.1 17.2 160 165-325 1-214 (220)
33 PRK10851 sulfate/thiosulfate t 99.9 2.5E-26 5.4E-31 246.2 19.2 158 164-326 2-218 (353)
34 PRK11000 maltose/maltodextrin 99.9 2.2E-26 4.9E-31 247.7 19.0 159 164-327 3-216 (369)
35 cd03216 ABC_Carb_Monos_I This 99.9 3E-26 6.6E-31 219.4 17.8 149 165-324 1-161 (163)
36 TIGR03522 GldA_ABC_ATP gliding 99.9 3.3E-26 7.2E-31 239.4 19.4 157 165-326 3-213 (301)
37 TIGR02314 ABC_MetN D-methionin 99.9 2.3E-26 5.1E-31 245.7 18.4 161 165-326 2-222 (343)
38 cd03226 ABC_cobalt_CbiO_domain 99.9 1.5E-26 3.3E-31 227.6 15.4 152 167-323 2-204 (205)
39 cd03268 ABC_BcrA_bacitracin_re 99.9 1.9E-26 4E-31 227.1 15.8 156 165-325 1-206 (208)
40 cd03301 ABC_MalK_N The N-termi 99.9 3.2E-26 6.9E-31 226.0 16.7 156 165-325 1-211 (213)
41 cd03218 ABC_YhbG The ABC trans 99.9 3.6E-26 7.9E-31 228.3 17.2 157 165-326 1-214 (232)
42 PRK11247 ssuB aliphatic sulfon 99.9 4.5E-26 9.8E-31 233.9 18.0 158 163-325 11-214 (257)
43 TIGR02673 FtsE cell division A 99.9 3.4E-26 7.3E-31 225.9 15.8 153 165-322 2-214 (214)
44 PRK09536 btuD corrinoid ABC tr 99.9 5.5E-26 1.2E-30 247.5 18.9 158 164-326 3-220 (402)
45 cd03230 ABC_DR_subfamily_A Thi 99.9 4.5E-26 9.8E-31 219.5 16.2 145 165-322 1-172 (173)
46 COG1122 CbiO ABC-type cobalt t 99.9 4.4E-26 9.6E-31 232.3 16.4 159 163-325 2-219 (235)
47 PRK11153 metN DL-methionine tr 99.9 5.5E-26 1.2E-30 242.3 17.7 161 165-326 2-222 (343)
48 cd03262 ABC_HisP_GlnQ_permease 99.9 4.5E-26 9.8E-31 224.5 15.8 154 165-323 1-213 (213)
49 cd03269 ABC_putative_ATPase Th 99.9 5.2E-26 1.1E-30 224.3 16.1 156 165-325 1-208 (210)
50 cd03229 ABC_Class3 This class 99.9 7.3E-26 1.6E-30 218.9 16.8 152 165-322 1-178 (178)
51 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1E-25 2.2E-30 212.2 16.9 137 165-322 1-144 (144)
52 cd03296 ABC_CysA_sulfate_impor 99.9 8.9E-26 1.9E-30 227.3 17.5 158 164-326 2-218 (239)
53 COG1117 PstB ABC-type phosphat 99.9 2.3E-26 5E-31 229.6 12.9 160 163-327 6-230 (253)
54 cd03224 ABC_TM1139_LivF_branch 99.9 7.2E-26 1.6E-30 224.4 16.4 156 165-325 1-212 (222)
55 cd03225 ABC_cobalt_CbiO_domain 99.9 4.3E-26 9.3E-31 224.7 14.6 151 167-322 2-211 (211)
56 PRK10908 cell division protein 99.9 9.2E-26 2E-30 224.6 16.8 155 165-324 2-216 (222)
57 cd03246 ABCC_Protease_Secretio 99.9 9.1E-26 2E-30 217.3 16.1 151 165-322 1-172 (173)
58 PRK10619 histidine/lysine/argi 99.9 1.2E-25 2.7E-30 228.9 18.0 160 162-326 3-233 (257)
59 PRK11629 lolD lipoprotein tran 99.9 1.4E-25 3E-30 225.2 18.0 163 161-325 2-225 (233)
60 PRK13637 cbiO cobalt transport 99.9 1.8E-25 3.9E-30 232.4 19.3 162 165-326 3-226 (287)
61 cd03266 ABC_NatA_sodium_export 99.9 1E-25 2.2E-30 223.2 16.5 160 165-325 2-216 (218)
62 cd03219 ABC_Mj1267_LivG_branch 99.9 9.6E-26 2.1E-30 225.8 16.4 156 165-325 1-223 (236)
63 cd03292 ABC_FtsE_transporter F 99.9 7.1E-26 1.5E-30 223.3 15.1 154 165-322 1-213 (214)
64 PRK11248 tauB taurine transpor 99.9 1.4E-25 3.1E-30 229.3 17.8 156 165-325 2-211 (255)
65 cd03263 ABC_subfamily_A The AB 99.9 1E-25 2.2E-30 223.4 16.2 158 165-325 1-212 (220)
66 cd03256 ABC_PhnC_transporter A 99.9 1.2E-25 2.6E-30 225.5 16.9 157 165-326 1-226 (241)
67 PRK14250 phosphate ABC transpo 99.9 1.6E-25 3.5E-30 226.2 17.8 158 164-326 3-213 (241)
68 PRK11264 putative amino-acid A 99.9 1.4E-25 3E-30 226.8 17.3 158 164-326 3-225 (250)
69 PRK11300 livG leucine/isoleuci 99.9 1.7E-25 3.7E-30 226.7 17.9 160 162-326 3-235 (255)
70 COG2884 FtsE Predicted ATPase 99.9 6.9E-26 1.5E-30 222.9 14.3 158 164-325 1-217 (223)
71 TIGR03410 urea_trans_UrtE urea 99.9 1.6E-25 3.4E-30 223.8 17.2 157 165-326 1-213 (230)
72 TIGR02315 ABC_phnC phosphonate 99.9 1.4E-25 3E-30 225.6 16.9 157 165-326 2-227 (243)
73 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.4E-25 3.1E-30 225.4 17.0 156 165-326 2-213 (236)
74 TIGR01188 drrA daunorubicin re 99.9 1.2E-25 2.7E-30 235.0 17.2 143 183-325 7-204 (302)
75 TIGR02211 LolD_lipo_ex lipopro 99.9 1.3E-25 2.8E-30 222.8 16.4 157 165-323 2-219 (221)
76 cd03223 ABCD_peroxisomal_ALDP 99.9 1.5E-25 3.1E-30 215.3 16.1 147 165-322 1-164 (166)
77 cd03214 ABC_Iron-Siderophores_ 99.9 5.8E-26 1.3E-30 220.0 13.1 152 166-324 1-177 (180)
78 PRK13638 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 230.1 17.2 157 165-326 2-217 (271)
79 PRK13643 cbiO cobalt transport 99.9 2.3E-25 5E-30 231.7 18.3 162 165-326 2-225 (288)
80 cd03258 ABC_MetN_methionine_tr 99.9 1.8E-25 4E-30 223.7 16.9 161 165-326 2-222 (233)
81 PRK11022 dppD dipeptide transp 99.9 2.9E-25 6.2E-30 235.4 19.3 162 164-326 3-235 (326)
82 PRK09493 glnQ glutamine ABC tr 99.9 2E-25 4.3E-30 224.7 17.2 157 165-326 2-217 (240)
83 TIGR03740 galliderm_ABC gallid 99.9 1.7E-25 3.7E-30 222.8 16.6 157 165-326 1-205 (223)
84 PRK10895 lipopolysaccharide AB 99.9 1.6E-25 3.4E-30 225.5 16.5 158 164-326 3-218 (241)
85 cd03257 ABC_NikE_OppD_transpor 99.9 2.3E-25 5E-30 221.4 17.3 160 165-325 2-226 (228)
86 PRK13651 cobalt transporter AT 99.9 3.2E-25 6.9E-30 233.1 19.1 163 164-326 2-246 (305)
87 PRK11831 putative ABC transpor 99.9 2.2E-25 4.9E-30 229.1 17.5 158 164-326 7-225 (269)
88 cd03235 ABC_Metallic_Cations A 99.9 6.3E-26 1.4E-30 224.1 12.9 150 167-321 2-208 (213)
89 cd03213 ABCG_EPDR ABCG transpo 99.9 2.2E-25 4.8E-30 218.8 16.7 157 164-325 3-192 (194)
90 cd03264 ABC_drug_resistance_li 99.9 1.6E-25 3.4E-30 221.0 15.7 155 165-325 1-209 (211)
91 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.2E-25 4.8E-30 224.8 17.0 157 165-326 1-217 (242)
92 PRK13647 cbiO cobalt transport 99.9 1.6E-25 3.4E-30 231.2 16.2 159 164-326 4-219 (274)
93 PRK11308 dppF dipeptide transp 99.9 4.7E-25 1E-29 234.0 20.1 164 163-326 4-236 (327)
94 cd03260 ABC_PstB_phosphate_tra 99.9 2.4E-25 5.3E-30 222.0 16.8 156 165-326 1-221 (227)
95 PRK13548 hmuV hemin importer A 99.9 2.9E-25 6.3E-30 227.0 17.7 158 164-326 2-222 (258)
96 PRK11614 livF leucine/isoleuci 99.9 2.9E-25 6.3E-30 223.1 17.4 159 163-326 4-218 (237)
97 PRK13641 cbiO cobalt transport 99.9 3E-25 6.5E-30 230.5 18.1 163 164-326 2-226 (287)
98 PRK10584 putative ABC transpor 99.9 3E-25 6.5E-30 221.5 17.3 160 163-324 5-225 (228)
99 PRK11231 fecE iron-dicitrate t 99.9 3.1E-25 6.6E-30 225.7 17.4 158 164-326 2-219 (255)
100 cd03247 ABCC_cytochrome_bd The 99.9 3.6E-25 7.8E-30 213.9 17.0 150 165-325 1-176 (178)
101 cd03215 ABC_Carb_Monos_II This 99.9 1.9E-25 4E-30 216.8 15.0 150 163-322 3-181 (182)
102 PRK11124 artP arginine transpo 99.9 3.5E-25 7.5E-30 223.2 17.4 158 164-326 2-222 (242)
103 TIGR00972 3a0107s01c2 phosphat 99.9 3.6E-25 7.9E-30 223.9 17.6 157 165-326 2-224 (247)
104 PRK13634 cbiO cobalt transport 99.9 3.7E-25 8E-30 230.4 18.2 162 165-326 3-227 (290)
105 TIGR02858 spore_III_AA stage I 99.9 2.1E-25 4.6E-30 231.4 15.7 207 101-313 1-237 (270)
106 TIGR03411 urea_trans_UrtD urea 99.9 4.1E-25 9E-30 222.3 17.4 158 164-326 2-223 (242)
107 PRK11144 modC molybdate transp 99.9 6.5E-25 1.4E-29 234.8 19.9 155 165-327 2-211 (352)
108 PRK15079 oligopeptide ABC tran 99.9 5.3E-25 1.2E-29 234.0 18.9 165 162-326 6-243 (331)
109 PRK15093 antimicrobial peptide 99.9 3.8E-25 8.2E-30 234.6 17.7 162 164-326 3-240 (330)
110 PRK10070 glycine betaine trans 99.9 7.2E-25 1.6E-29 238.6 20.1 163 164-326 4-246 (400)
111 PRK14242 phosphate transporter 99.9 6.1E-25 1.3E-29 222.8 18.0 159 163-326 5-229 (253)
112 cd03298 ABC_ThiQ_thiamine_tran 99.9 5.9E-25 1.3E-29 216.9 17.4 154 165-325 1-209 (211)
113 PRK13636 cbiO cobalt transport 99.9 7.5E-25 1.6E-29 227.1 18.6 159 163-326 4-223 (283)
114 PRK09473 oppD oligopeptide tra 99.9 9.1E-25 2E-29 232.1 19.6 163 163-326 11-243 (330)
115 PRK10575 iron-hydroxamate tran 99.9 5.8E-25 1.3E-29 225.3 17.5 160 162-326 9-229 (265)
116 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.9E-25 6.3E-30 228.5 15.1 156 166-326 26-242 (269)
117 TIGR03005 ectoine_ehuA ectoine 99.9 7.1E-25 1.5E-29 222.4 17.6 157 165-326 1-228 (252)
118 cd03228 ABCC_MRP_Like The MRP 99.9 5.2E-25 1.1E-29 211.7 15.5 153 165-322 1-171 (171)
119 TIGR01186 proV glycine betaine 99.9 3.5E-25 7.5E-30 238.4 15.9 144 183-326 7-211 (363)
120 TIGR02323 CP_lyasePhnK phospho 99.9 1.4E-24 3E-29 220.2 19.3 158 164-326 3-230 (253)
121 PRK15112 antimicrobial peptide 99.9 9.2E-25 2E-29 224.3 18.2 163 163-325 3-230 (267)
122 TIGR03873 F420-0_ABC_ATP propo 99.9 6.9E-25 1.5E-29 223.3 16.9 157 165-326 2-218 (256)
123 PRK10253 iron-enterobactin tra 99.9 7.4E-25 1.6E-29 224.6 17.2 160 162-326 5-225 (265)
124 PRK10418 nikD nickel transport 99.9 1.3E-24 2.7E-29 221.4 18.7 157 164-326 4-222 (254)
125 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.1E-24 2.4E-29 214.7 17.7 152 165-326 1-186 (200)
126 PRK13646 cbiO cobalt transport 99.9 9.8E-25 2.1E-29 226.6 18.0 162 165-326 3-227 (286)
127 cd03222 ABC_RNaseL_inhibitor T 99.9 8.4E-25 1.8E-29 213.9 16.4 137 168-323 4-150 (177)
128 PRK14247 phosphate ABC transpo 99.9 1.1E-24 2.3E-29 220.6 17.7 158 164-326 3-226 (250)
129 cd03254 ABCC_Glucan_exporter_l 99.9 1.2E-24 2.5E-29 217.1 17.6 157 164-325 2-217 (229)
130 PRK14268 phosphate ABC transpo 99.9 1.4E-24 3E-29 221.5 18.6 161 161-326 9-234 (258)
131 PRK14274 phosphate ABC transpo 99.9 1.6E-24 3.5E-29 220.9 19.0 162 160-326 8-235 (259)
132 PRK11701 phnK phosphonate C-P 99.9 1.7E-24 3.6E-29 220.7 19.0 159 163-326 5-233 (258)
133 COG1123 ATPase components of v 99.9 9.5E-25 2E-29 242.8 18.6 176 163-350 4-250 (539)
134 PRK14273 phosphate ABC transpo 99.9 1.5E-24 3.2E-29 220.3 18.3 158 164-326 7-230 (254)
135 TIGR01978 sufC FeS assembly AT 99.9 1.2E-24 2.7E-29 218.4 17.4 156 165-325 1-225 (243)
136 COG0444 DppD ABC-type dipeptid 99.9 8.7E-25 1.9E-29 229.3 16.9 176 165-351 2-250 (316)
137 cd03252 ABCC_Hemolysin The ABC 99.9 1.5E-24 3.2E-29 217.7 17.9 158 165-326 1-217 (237)
138 PRK13635 cbiO cobalt transport 99.9 1.1E-24 2.3E-29 225.8 17.2 162 161-326 2-221 (279)
139 PRK14267 phosphate ABC transpo 99.9 1.8E-24 3.8E-29 219.4 18.4 158 164-326 4-229 (253)
140 PRK15439 autoinducer 2 ABC tra 99.9 1E-24 2.3E-29 243.0 18.3 158 164-326 11-221 (510)
141 PRK13645 cbiO cobalt transport 99.9 1.4E-24 3E-29 225.4 18.0 163 164-326 6-232 (289)
142 cd03232 ABC_PDR_domain2 The pl 99.9 9.7E-25 2.1E-29 213.7 15.8 156 164-325 3-190 (192)
143 PRK13649 cbiO cobalt transport 99.9 1E-24 2.2E-29 224.9 16.7 162 165-326 3-226 (280)
144 PRK10771 thiQ thiamine transpo 99.9 2.1E-24 4.5E-29 216.5 18.4 157 165-326 2-211 (232)
145 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-24 2.4E-29 215.8 16.1 149 169-325 5-212 (214)
146 PRK13640 cbiO cobalt transport 99.9 1.2E-24 2.5E-29 225.6 17.0 163 160-326 1-224 (282)
147 PRK13652 cbiO cobalt transport 99.9 9.4E-25 2E-29 225.6 16.1 159 164-326 3-219 (277)
148 PRK13631 cbiO cobalt transport 99.9 2E-24 4.3E-29 228.6 18.9 164 163-326 20-257 (320)
149 cd03245 ABCC_bacteriocin_expor 99.9 1.4E-24 3E-29 215.3 16.6 158 164-325 2-218 (220)
150 COG4175 ProV ABC-type proline/ 99.9 1.7E-25 3.6E-30 233.6 10.4 177 164-355 4-265 (386)
151 PRK14248 phosphate ABC transpo 99.9 2E-24 4.3E-29 221.6 18.1 159 163-326 20-244 (268)
152 PRK14245 phosphate ABC transpo 99.9 2.8E-24 6E-29 217.9 18.9 159 163-326 2-226 (250)
153 PRK14256 phosphate ABC transpo 99.9 2.1E-24 4.6E-29 219.0 18.0 161 162-327 2-229 (252)
154 PRK13644 cbiO cobalt transport 99.9 1E-24 2.3E-29 225.1 15.8 157 165-326 2-216 (274)
155 PRK13650 cbiO cobalt transport 99.9 2.1E-24 4.6E-29 223.4 18.1 160 164-326 4-221 (279)
156 TIGR02769 nickel_nikE nickel i 99.9 1.9E-24 4.1E-29 221.6 17.6 163 164-326 2-232 (265)
157 PRK15056 manganese/iron transp 99.9 3.4E-24 7.3E-29 220.7 19.4 157 163-325 5-221 (272)
158 PRK09544 znuC high-affinity zi 99.9 1.9E-24 4.1E-29 220.9 17.4 156 164-325 4-200 (251)
159 PRK10744 pstB phosphate transp 99.9 3.3E-24 7.1E-29 219.0 18.9 158 164-326 13-236 (260)
160 TIGR03415 ABC_choXWV_ATP choli 99.9 1.3E-24 2.8E-29 235.3 16.8 145 183-327 38-247 (382)
161 PRK10938 putative molybdenum t 99.9 1.4E-24 3E-29 240.2 17.4 158 164-326 3-216 (490)
162 cd03300 ABC_PotA_N PotA is an 99.9 2E-24 4.3E-29 216.9 16.8 157 165-326 1-212 (232)
163 PRK14249 phosphate ABC transpo 99.9 4.2E-24 9E-29 216.7 19.3 158 164-326 4-227 (251)
164 TIGR01277 thiQ thiamine ABC tr 99.9 2E-24 4.4E-29 214.0 16.6 154 165-325 1-209 (213)
165 PRK13639 cbiO cobalt transport 99.9 2.1E-24 4.5E-29 222.8 17.2 158 165-326 2-218 (275)
166 PRK09984 phosphonate/organopho 99.9 1.6E-24 3.5E-29 221.2 16.1 158 164-326 4-234 (262)
167 TIGR02142 modC_ABC molybdenum 99.9 3.7E-24 8E-29 229.1 19.6 151 169-326 4-213 (354)
168 PRK09700 D-allose transporter 99.9 1.4E-24 3.1E-29 241.4 17.0 159 163-326 4-226 (510)
169 PRK14262 phosphate ABC transpo 99.9 3.6E-24 7.9E-29 216.8 18.4 158 164-326 3-226 (250)
170 PRK10762 D-ribose transporter 99.9 1.7E-24 3.8E-29 240.4 17.5 159 163-326 3-222 (501)
171 PRK13648 cbiO cobalt transport 99.9 2.3E-24 4.9E-29 221.4 16.9 163 160-326 3-223 (269)
172 PRK14270 phosphate ABC transpo 99.9 3.5E-24 7.7E-29 217.2 18.1 160 163-327 3-228 (251)
173 PRK14235 phosphate transporter 99.9 3.7E-24 8E-29 219.9 18.4 161 161-326 16-243 (267)
174 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.2E-24 2.6E-29 218.1 14.4 155 165-325 23-222 (224)
175 PRK10247 putative ABC transpor 99.9 1.8E-24 3.8E-29 216.6 15.4 152 162-319 5-211 (225)
176 PRK13549 xylose transporter AT 99.9 2.1E-24 4.5E-29 240.1 17.5 159 163-326 4-224 (506)
177 cd03369 ABCC_NFT1 Domain 2 of 99.9 4.9E-24 1.1E-28 210.1 18.2 159 163-325 5-203 (207)
178 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.1E-24 4.6E-29 216.7 15.8 159 165-326 1-218 (238)
179 PRK14272 phosphate ABC transpo 99.9 4.2E-24 9.1E-29 216.3 18.1 158 164-326 4-228 (252)
180 PRK15064 ABC transporter ATP-b 99.9 2.1E-24 4.6E-29 241.3 17.5 155 165-324 2-231 (530)
181 PRK14240 phosphate transporter 99.9 4.3E-24 9.4E-29 216.2 18.0 158 164-326 3-226 (250)
182 PRK14239 phosphate transporter 99.9 4.5E-24 9.8E-29 216.0 18.2 159 163-326 4-228 (252)
183 PRK14259 phosphate ABC transpo 99.9 5.1E-24 1.1E-28 219.3 18.4 153 163-320 12-228 (269)
184 TIGR00968 3a0106s01 sulfate AB 99.9 3.6E-24 7.8E-29 215.9 16.8 157 165-326 1-212 (237)
185 COG3840 ThiQ ABC-type thiamine 99.9 2.2E-24 4.7E-29 211.3 14.5 158 165-327 2-212 (231)
186 PRK14241 phosphate transporter 99.9 4.4E-24 9.5E-29 217.6 17.3 158 164-326 4-234 (258)
187 cd03251 ABCC_MsbA MsbA is an e 99.9 4.6E-24 9.9E-29 213.5 17.1 157 165-325 1-216 (234)
188 PRK09580 sufC cysteine desulfu 99.9 4.9E-24 1.1E-28 215.0 17.4 157 165-326 2-227 (248)
189 cd03267 ABC_NatA_like Similar 99.9 2E-24 4.4E-29 217.8 14.7 143 183-325 35-234 (236)
190 cd03253 ABCC_ATM1_transporter 99.9 3.8E-24 8.2E-29 214.3 16.5 156 165-325 1-215 (236)
191 PRK14251 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 214.7 18.4 158 164-326 4-227 (251)
192 PRK14246 phosphate ABC transpo 99.9 6.4E-24 1.4E-28 217.4 18.1 160 163-327 9-234 (257)
193 PRK13543 cytochrome c biogenes 99.9 3.7E-24 7.9E-29 212.8 15.9 152 163-319 10-211 (214)
194 COG0410 LivF ABC-type branched 99.9 4.2E-24 9E-29 215.5 16.3 160 163-327 2-219 (237)
195 PRK13633 cobalt transporter AT 99.9 3.3E-24 7.2E-29 221.8 16.1 163 163-326 3-225 (280)
196 PRK15134 microcin C ABC transp 99.9 4.2E-24 9E-29 238.9 18.0 163 163-326 4-238 (529)
197 cd03299 ABC_ModC_like Archeal 99.9 4.7E-24 1E-28 214.8 16.7 156 165-326 1-211 (235)
198 COG1123 ATPase components of v 99.9 4.8E-24 1E-28 237.2 18.2 166 161-327 277-512 (539)
199 PRK14269 phosphate ABC transpo 99.9 6.3E-24 1.4E-28 215.0 17.5 158 164-326 2-222 (246)
200 cd03233 ABC_PDR_domain1 The pl 99.9 6.1E-24 1.3E-28 209.9 16.8 160 165-325 4-200 (202)
201 TIGR02324 CP_lyasePhnL phospho 99.9 4.5E-24 9.7E-29 212.5 16.0 154 165-318 2-222 (224)
202 cd03248 ABCC_TAP TAP, the Tran 99.9 7.5E-24 1.6E-28 211.1 17.6 158 162-322 9-225 (226)
203 PRK11288 araG L-arabinose tran 99.9 4.5E-24 9.8E-29 237.1 17.7 158 164-326 4-221 (501)
204 TIGR03608 L_ocin_972_ABC putat 99.9 2.2E-24 4.7E-29 211.6 13.4 146 167-318 1-206 (206)
205 cd03250 ABCC_MRP_domain1 Domai 99.9 4.9E-24 1.1E-28 209.7 15.8 157 165-322 1-204 (204)
206 PRK14265 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 218.9 17.8 159 163-326 19-250 (274)
207 PRK14253 phosphate ABC transpo 99.9 7E-24 1.5E-28 214.6 17.2 158 164-326 3-225 (249)
208 TIGR03269 met_CoM_red_A2 methy 99.9 4.4E-24 9.6E-29 238.0 17.1 156 165-325 1-249 (520)
209 PRK10419 nikE nickel transport 99.9 1.1E-23 2.5E-28 216.6 18.7 163 164-326 3-233 (268)
210 cd03231 ABC_CcmA_heme_exporter 99.9 4.6E-24 9.9E-29 210.2 15.1 149 165-318 1-198 (201)
211 TIGR02982 heterocyst_DevA ABC 99.9 5.8E-24 1.3E-28 211.7 16.0 157 165-323 2-219 (220)
212 cd03244 ABCC_MRP_domain2 Domai 99.9 6.9E-24 1.5E-28 210.5 16.5 157 165-325 3-217 (221)
213 PRK14255 phosphate ABC transpo 99.9 1.3E-23 2.8E-28 213.0 18.2 158 164-326 5-228 (252)
214 PRK14258 phosphate ABC transpo 99.9 1.6E-23 3.4E-28 214.3 18.8 157 164-325 7-236 (261)
215 PRK13632 cbiO cobalt transport 99.9 6E-24 1.3E-28 218.7 15.6 160 163-326 6-223 (271)
216 PRK13538 cytochrome c biogenes 99.9 5.9E-24 1.3E-28 209.6 14.9 149 165-318 2-202 (204)
217 PRK14236 phosphate transporter 99.9 1.3E-23 2.8E-28 216.4 18.0 160 162-326 23-248 (272)
218 PRK14243 phosphate transporter 99.9 1.4E-23 3E-28 215.3 18.1 158 164-326 10-240 (264)
219 PRK14275 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 218.9 17.7 161 161-326 36-262 (286)
220 TIGR02633 xylG D-xylose ABC tr 99.9 6.7E-24 1.4E-28 235.3 16.9 157 165-326 2-222 (500)
221 PRK13547 hmuV hemin importer A 99.9 9.5E-24 2.1E-28 218.4 16.8 157 165-326 2-236 (272)
222 PRK14237 phosphate transporter 99.9 1.5E-23 3.2E-28 215.4 18.0 159 163-326 19-243 (267)
223 PRK15064 ABC transporter ATP-b 99.9 1.7E-23 3.7E-28 234.0 20.0 157 163-324 318-514 (530)
224 PRK14260 phosphate ABC transpo 99.9 1.9E-23 4.1E-28 213.3 18.4 158 164-326 7-235 (259)
225 PRK14238 phosphate transporter 99.9 1.8E-23 3.9E-28 215.4 18.4 159 163-326 23-247 (271)
226 CHL00131 ycf16 sulfate ABC tra 99.9 1.4E-23 3E-28 212.5 17.1 158 164-326 7-233 (252)
227 PRK10261 glutathione transport 99.9 1.5E-23 3.2E-28 239.4 19.3 164 163-326 312-545 (623)
228 PRK10261 glutathione transport 99.9 7.2E-24 1.6E-28 241.9 16.7 162 163-325 11-249 (623)
229 PRK14271 phosphate ABC transpo 99.9 2.2E-23 4.8E-28 215.6 18.8 160 162-326 19-243 (276)
230 COG4559 ABC-type hemin transpo 99.9 1.1E-23 2.4E-28 210.4 15.5 157 165-326 2-222 (259)
231 cd03234 ABCG_White The White s 99.9 1.6E-23 3.4E-28 209.4 16.7 161 164-325 3-224 (226)
232 PRK14261 phosphate ABC transpo 99.9 2.4E-23 5.1E-28 211.4 18.2 158 164-326 6-229 (253)
233 PRK10982 galactose/methyl gala 99.9 8.2E-24 1.8E-28 234.3 16.1 154 168-326 2-215 (491)
234 PRK11819 putative ABC transpor 99.9 1.3E-23 2.7E-28 236.7 17.8 157 163-324 5-239 (556)
235 COG4181 Predicted ABC-type tra 99.9 6.1E-24 1.3E-28 206.5 12.9 159 164-324 6-225 (228)
236 PRK14244 phosphate ABC transpo 99.9 2E-23 4.4E-28 211.7 17.1 156 166-326 7-229 (251)
237 PRK10636 putative ABC transpor 99.9 1.9E-23 4.1E-28 239.2 18.9 156 165-325 2-226 (638)
238 PRK13642 cbiO cobalt transport 99.9 2E-23 4.2E-28 215.8 17.0 160 164-326 4-221 (277)
239 PRK14254 phosphate ABC transpo 99.9 2.7E-23 5.9E-28 216.1 18.1 161 161-326 36-261 (285)
240 cd00267 ABC_ATPase ABC (ATP-bi 99.9 2.9E-23 6.2E-28 196.3 16.4 145 167-322 2-157 (157)
241 TIGR03269 met_CoM_red_A2 methy 99.9 2.3E-23 5E-28 232.3 18.4 163 163-325 278-508 (520)
242 PRK10636 putative ABC transpor 99.9 2.2E-23 4.7E-28 238.7 18.5 158 162-324 310-506 (638)
243 cd03288 ABCC_SUR2 The SUR doma 99.9 4.4E-23 9.4E-28 210.7 18.3 159 164-326 19-235 (257)
244 PRK13539 cytochrome c biogenes 99.9 1.7E-23 3.8E-28 206.9 14.9 148 164-318 2-198 (207)
245 PRK11147 ABC transporter ATPas 99.9 3.1E-23 6.6E-28 237.2 18.8 157 164-325 3-233 (635)
246 COG0411 LivG ABC-type branched 99.9 5.7E-24 1.2E-28 215.9 11.2 157 163-325 3-230 (250)
247 PRK14266 phosphate ABC transpo 99.9 6.5E-23 1.4E-27 207.6 18.7 158 164-326 3-226 (250)
248 PRK14252 phosphate ABC transpo 99.9 5.1E-23 1.1E-27 210.8 18.1 159 163-326 15-241 (265)
249 PRK13546 teichoic acids export 99.9 9.8E-23 2.1E-27 210.2 19.6 163 164-326 4-224 (264)
250 COG1137 YhbG ABC-type (unclass 99.9 1.5E-24 3.2E-29 214.9 5.8 167 164-345 4-229 (243)
251 TIGR01189 ccmA heme ABC export 99.9 1.9E-23 4.2E-28 204.8 13.6 145 165-316 1-196 (198)
252 TIGR02633 xylG D-xylose ABC tr 99.9 3.1E-23 6.6E-28 230.1 16.2 163 163-327 256-485 (500)
253 PRK13549 xylose transporter AT 99.9 2.5E-23 5.4E-28 231.4 15.5 164 162-327 257-487 (506)
254 TIGR02770 nickel_nikD nickel i 99.9 4.7E-23 1E-27 206.7 16.0 138 189-326 9-207 (230)
255 PRK14263 phosphate ABC transpo 99.9 8.5E-23 1.8E-27 209.6 18.2 159 163-326 7-237 (261)
256 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 3.5E-23 7.7E-28 232.8 16.5 156 164-324 4-237 (552)
257 cd03289 ABCC_CFTR2 The CFTR su 99.9 7E-23 1.5E-27 212.8 17.5 158 164-326 2-217 (275)
258 PRK09700 D-allose transporter 99.9 3.4E-23 7.3E-28 230.4 15.9 158 163-327 264-491 (510)
259 PRK13540 cytochrome c biogenes 99.9 3.3E-23 7.2E-28 203.7 13.9 144 165-314 2-195 (200)
260 TIGR01184 ntrCD nitrate transp 99.9 3.8E-23 8.3E-28 207.8 14.1 137 189-325 8-195 (230)
261 COG4604 CeuD ABC-type enteroch 99.9 4.8E-24 1E-28 211.1 7.3 157 164-327 1-218 (252)
262 cd03290 ABCC_SUR1_N The SUR do 99.9 5.9E-23 1.3E-27 203.9 15.0 151 166-321 2-217 (218)
263 TIGR01257 rim_protein retinal- 99.9 7E-23 1.5E-27 255.4 18.9 173 162-347 1935-2162(2272)
264 PRK14257 phosphate ABC transpo 99.9 1.9E-22 4.1E-27 214.4 19.5 161 164-327 80-306 (329)
265 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 9.1E-23 2E-27 229.5 18.0 159 162-325 320-521 (552)
266 COG4598 HisP ABC-type histidin 99.9 1.6E-23 3.4E-28 205.0 10.1 156 164-325 6-232 (256)
267 PRK14264 phosphate ABC transpo 99.9 9E-23 1.9E-27 214.1 16.5 158 164-326 45-281 (305)
268 PRK15134 microcin C ABC transp 99.9 1E-22 2.3E-27 227.6 18.0 162 163-325 274-506 (529)
269 COG2274 SunT ABC-type bacterio 99.9 6E-23 1.3E-27 236.8 16.3 161 163-327 470-689 (709)
270 PRK11819 putative ABC transpor 99.9 1.3E-22 2.8E-27 228.5 18.3 157 163-324 323-522 (556)
271 COG0488 Uup ATPase components 99.9 9.1E-23 2E-27 228.8 16.7 158 164-327 3-232 (530)
272 PRK11147 ABC transporter ATPas 99.9 1.1E-22 2.5E-27 232.5 17.8 159 162-325 317-518 (635)
273 PRK10938 putative molybdenum t 99.9 4.2E-23 9.2E-28 228.4 13.8 159 162-325 258-483 (490)
274 COG4525 TauB ABC-type taurine 99.9 6.8E-23 1.5E-27 202.7 13.4 159 164-325 3-215 (259)
275 PRK03695 vitamin B12-transport 99.9 7.6E-23 1.7E-27 208.0 14.2 142 184-326 11-214 (248)
276 PRK13545 tagH teichoic acids e 99.9 2.4E-22 5.1E-27 224.4 19.0 160 164-326 21-224 (549)
277 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 1.8E-22 3.8E-27 232.8 18.2 160 163-326 476-692 (710)
278 COG1119 ModF ABC-type molybden 99.9 8.8E-23 1.9E-27 207.5 13.8 161 160-325 27-253 (257)
279 TIGR03771 anch_rpt_ABC anchore 99.9 3E-22 6.5E-27 200.5 17.0 137 189-326 3-193 (223)
280 cd03291 ABCC_CFTR1 The CFTR su 99.9 4E-22 8.7E-27 207.8 18.1 155 164-326 39-239 (282)
281 TIGR01257 rim_protein retinal- 99.9 5.1E-22 1.1E-26 247.8 21.7 161 163-326 927-1141(2272)
282 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.9E-22 4.2E-27 205.9 14.9 134 189-322 22-193 (246)
283 PRK10982 galactose/methyl gala 99.9 1.9E-22 4.2E-27 223.4 16.1 159 162-327 248-473 (491)
284 COG4608 AppF ABC-type oligopep 99.9 2.2E-22 4.9E-27 207.3 15.3 174 164-350 4-205 (268)
285 PLN03073 ABC transporter F fam 99.9 4.7E-22 1E-26 230.4 18.9 158 163-324 507-703 (718)
286 PRK11176 lipid transporter ATP 99.9 3.6E-22 7.7E-27 224.9 17.5 160 164-327 341-560 (582)
287 PRK13409 putative ATPase RIL; 99.9 2.5E-22 5.4E-27 228.3 16.0 154 163-323 339-531 (590)
288 PRK11288 araG L-arabinose tran 99.9 2.8E-22 6E-27 222.9 16.0 156 164-328 257-479 (501)
289 COG4161 ArtP ABC-type arginine 99.9 2.1E-22 4.5E-27 194.5 12.3 152 165-326 3-222 (242)
290 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 5.7E-22 1.2E-26 228.0 18.2 160 164-327 451-666 (686)
291 PRK13541 cytochrome c biogenes 99.9 2.9E-22 6.3E-27 196.3 13.3 140 165-310 2-188 (195)
292 PRK10762 D-ribose transporter 99.9 2.5E-22 5.5E-27 223.2 13.6 154 164-327 257-477 (501)
293 PRK13657 cyclic beta-1,2-gluca 99.9 1.5E-21 3.2E-26 220.7 19.9 159 164-327 334-551 (588)
294 PRK10790 putative multidrug tr 99.9 8.5E-22 1.8E-26 222.6 17.8 160 163-327 339-556 (592)
295 cd03236 ABC_RNaseL_inhibitor_d 99.9 6.3E-22 1.4E-26 203.4 15.3 151 168-324 4-217 (255)
296 PRK15177 Vi polysaccharide exp 99.9 7.6E-22 1.7E-26 196.9 15.2 137 189-326 10-184 (213)
297 PRK15439 autoinducer 2 ABC tra 99.9 4.8E-22 1E-26 221.7 14.8 154 164-327 268-485 (510)
298 cd03238 ABC_UvrA The excision 99.9 6E-22 1.3E-26 193.7 13.6 129 183-322 9-165 (176)
299 TIGR01192 chvA glucan exporter 99.9 1.1E-21 2.5E-26 222.2 17.9 158 164-326 334-550 (585)
300 PLN03073 ABC transporter F fam 99.9 1.3E-21 2.7E-26 226.9 18.3 156 164-325 177-421 (718)
301 TIGR01193 bacteriocin_ABC ABC- 99.9 1.9E-21 4E-26 224.4 19.5 158 164-326 473-689 (708)
302 PRK11174 cysteine/glutathione 99.9 2E-21 4.4E-26 219.2 19.3 157 164-326 349-564 (588)
303 COG1129 MglA ABC-type sugar tr 99.9 1.4E-21 3E-26 216.3 17.0 158 163-325 7-225 (500)
304 TIGR00958 3a01208 Conjugate Tr 99.9 3E-21 6.4E-26 223.4 20.5 161 164-327 478-695 (711)
305 PRK11160 cysteine/glutathione 99.9 2E-21 4.3E-26 219.6 18.4 161 163-327 337-555 (574)
306 TIGR03375 type_I_sec_LssB type 99.9 1.9E-21 4E-26 224.0 18.3 160 163-326 462-680 (694)
307 TIGR01166 cbiO cobalt transpor 99.9 4.6E-22 1E-26 193.6 10.9 125 183-307 6-189 (190)
308 TIGR01187 potA spermidine/putr 99.9 1.1E-21 2.4E-26 207.9 14.4 131 197-327 1-183 (325)
309 TIGR01842 type_I_sec_PrtD type 99.9 2.1E-21 4.6E-26 217.7 17.4 159 164-326 316-534 (544)
310 PLN03211 ABC transporter G-25; 99.9 1.1E-21 2.3E-26 225.7 14.9 157 166-327 70-289 (659)
311 TIGR02203 MsbA_lipidA lipid A 99.9 5E-21 1.1E-25 214.7 19.4 161 163-327 329-549 (571)
312 TIGR01846 type_I_sec_HlyB type 99.9 2.6E-21 5.7E-26 222.9 17.6 161 163-327 454-673 (694)
313 PRK10789 putative multidrug tr 99.9 3.4E-21 7.4E-26 217.4 17.6 160 164-327 313-531 (569)
314 PRK10522 multidrug transporter 99.9 4.9E-21 1.1E-25 215.1 18.5 158 164-326 322-530 (547)
315 TIGR01194 cyc_pep_trnsptr cycl 99.9 6.8E-21 1.5E-25 214.5 18.5 162 163-325 336-550 (555)
316 TIGR02204 MsbA_rel ABC transpo 99.9 1.1E-20 2.3E-25 212.5 19.2 161 164-327 337-556 (576)
317 PRK10535 macrolide transporter 99.9 1.1E-20 2.5E-25 216.7 18.6 163 164-328 4-226 (648)
318 KOG0057 Mitochondrial Fe/S clu 99.9 8.7E-21 1.9E-25 209.3 16.8 162 161-327 348-567 (591)
319 COG3845 ABC-type uncharacteriz 99.9 7.5E-21 1.6E-25 208.0 16.0 157 164-325 4-220 (501)
320 TIGR00954 3a01203 Peroxysomal 99.9 6.4E-21 1.4E-25 219.2 16.2 153 163-320 450-653 (659)
321 KOG0055 Multidrug/pheromone ex 99.8 1E-20 2.2E-25 224.2 17.7 163 163-330 349-572 (1228)
322 COG4172 ABC-type uncharacteriz 99.8 1E-20 2.3E-25 202.7 16.2 165 161-326 3-239 (534)
323 COG4988 CydD ABC-type transpor 99.8 1.3E-20 2.8E-25 209.8 17.0 158 163-327 317-536 (559)
324 TIGR02857 CydD thiol reductant 99.8 7.5E-21 1.6E-25 212.1 15.1 152 163-318 319-529 (529)
325 COG1132 MdlB ABC-type multidru 99.8 1.2E-20 2.6E-25 212.5 16.7 159 163-327 327-545 (567)
326 PRK13409 putative ATPase RIL; 99.8 5.2E-21 1.1E-25 217.5 13.4 147 169-321 78-287 (590)
327 COG4586 ABC-type uncharacteriz 99.8 8.1E-21 1.8E-25 195.6 13.3 143 183-325 38-237 (325)
328 COG4107 PhnK ABC-type phosphon 99.8 1.3E-20 2.7E-25 184.0 13.4 162 163-330 5-237 (258)
329 COG4148 ModC ABC-type molybdat 99.8 8.3E-21 1.8E-25 196.0 12.5 138 189-326 21-210 (352)
330 KOG0058 Peptide exporter, ABC 99.8 4E-20 8.8E-25 209.4 17.3 160 163-327 464-684 (716)
331 COG0488 Uup ATPase components 99.8 1.7E-20 3.6E-25 210.6 14.0 159 161-324 318-514 (530)
332 TIGR02868 CydC thiol reductant 99.8 3.2E-20 6.8E-25 207.1 15.9 138 164-305 334-529 (529)
333 COG1134 TagH ABC-type polysacc 99.8 8.4E-20 1.8E-24 185.8 16.6 143 183-326 41-228 (249)
334 COG4987 CydC ABC-type transpor 99.8 2.7E-20 5.8E-25 205.2 13.7 158 164-325 336-552 (573)
335 COG4619 ABC-type uncharacteriz 99.8 6.5E-21 1.4E-25 185.1 6.2 143 182-324 16-213 (223)
336 PLN03232 ABC transporter C fam 99.8 1.5E-19 3.3E-24 223.8 19.0 159 164-326 1234-1450(1495)
337 PTZ00265 multidrug resistance 99.8 6.4E-20 1.4E-24 226.3 14.6 156 164-322 382-656 (1466)
338 KOG0059 Lipid exporter ABCA1 a 99.8 3.5E-20 7.5E-25 219.3 11.0 161 163-327 563-780 (885)
339 PLN03130 ABC transporter C fam 99.8 4.4E-19 9.6E-24 220.6 20.8 161 163-327 1236-1454(1622)
340 cd03270 ABC_UvrA_I The excisio 99.8 3.5E-19 7.5E-24 179.5 15.8 77 248-325 133-224 (226)
341 COG4172 ABC-type uncharacteriz 99.8 2.8E-19 6E-24 191.9 15.3 174 164-348 276-520 (534)
342 PTZ00265 multidrug resistance 99.8 4.4E-19 9.6E-24 218.9 19.4 158 164-324 1165-1441(1466)
343 TIGR00955 3a01204 The Eye Pigm 99.8 2.8E-19 6E-24 204.2 15.1 145 183-327 39-249 (617)
344 PTZ00243 ABC transporter; Prov 99.8 6.8E-19 1.5E-23 218.5 19.4 161 163-327 1307-1526(1560)
345 TIGR00957 MRP_assoc_pro multi 99.8 4.5E-19 9.8E-24 219.9 17.8 160 164-327 636-843 (1522)
346 TIGR00956 3a01205 Pleiotropic 99.8 3.7E-19 8E-24 218.9 16.6 163 164-327 759-986 (1394)
347 TIGR00957 MRP_assoc_pro multi 99.8 7.4E-19 1.6E-23 218.0 19.1 161 163-327 1283-1501(1522)
348 PLN03232 ABC transporter C fam 99.8 7.4E-19 1.6E-23 217.7 18.0 159 164-327 614-821 (1495)
349 cd02645 R3H_AAA R3H domain of 99.8 1.3E-19 2.9E-24 148.6 6.9 60 554-613 1-60 (60)
350 COG4674 Uncharacterized ABC-ty 99.8 1.1E-19 2.3E-24 180.2 7.6 156 163-325 4-226 (249)
351 PLN03140 ABC transporter G fam 99.8 1.3E-18 2.9E-23 214.3 18.7 164 164-327 867-1103(1470)
352 PLN03130 ABC transporter C fam 99.8 1.3E-18 2.8E-23 216.5 18.2 159 164-327 614-821 (1622)
353 COG1101 PhnK ABC-type uncharac 99.8 8.4E-19 1.8E-23 175.9 13.3 165 165-331 2-235 (263)
354 COG4618 ArpD ABC-type protease 99.8 4.9E-19 1.1E-23 194.1 12.6 157 164-327 334-553 (580)
355 KOG0055 Multidrug/pheromone ex 99.8 2.3E-18 5.1E-23 204.3 17.4 161 164-327 987-1206(1228)
356 TIGR01271 CFTR_protein cystic 99.8 2.9E-18 6.4E-23 212.3 19.0 158 164-326 1217-1432(1490)
357 cd03279 ABC_sbcCD SbcCD and ot 99.8 2.3E-18 4.9E-23 171.6 13.1 154 164-323 5-211 (213)
358 TIGR01271 CFTR_protein cystic 99.8 6.6E-18 1.4E-22 209.2 19.2 144 183-327 440-629 (1490)
359 COG4136 ABC-type uncharacteriz 99.8 1.9E-18 4E-23 165.6 11.0 136 164-309 2-199 (213)
360 COG4133 CcmA ABC-type transpor 99.8 1.3E-18 2.8E-23 171.5 10.2 137 165-307 3-192 (209)
361 cd03278 ABC_SMC_barmotin Barmo 99.8 5.1E-18 1.1E-22 168.1 12.7 129 189-320 20-190 (197)
362 PTZ00243 ABC transporter; Prov 99.8 5.1E-18 1.1E-22 210.8 15.3 143 183-326 674-862 (1560)
363 COG4167 SapF ABC-type antimicr 99.7 8.1E-18 1.7E-22 165.6 11.7 161 165-326 5-231 (267)
364 COG0396 sufC Cysteine desulfur 99.7 2.2E-17 4.7E-22 167.1 14.8 157 164-325 3-225 (251)
365 PLN03140 ABC transporter G fam 99.7 6.3E-18 1.4E-22 208.5 12.8 145 183-327 179-420 (1470)
366 TIGR00956 3a01205 Pleiotropic 99.7 1.3E-17 2.9E-22 205.3 15.5 145 183-327 75-293 (1394)
367 KOG0062 ATPase component of AB 99.7 5E-18 1.1E-22 186.4 7.2 156 164-325 80-275 (582)
368 KOG0927 Predicted transporter 99.7 3.9E-17 8.3E-22 180.3 13.5 158 164-327 75-301 (614)
369 cd03272 ABC_SMC3_euk Eukaryoti 99.7 6.7E-17 1.5E-21 162.7 13.6 73 248-321 154-236 (243)
370 KOG0061 Transporter, ABC super 99.7 7.2E-17 1.6E-21 184.6 15.3 163 165-327 26-253 (613)
371 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1E-16 2.2E-21 160.7 14.4 146 165-320 6-204 (212)
372 cd03271 ABC_UvrA_II The excisi 99.7 3.1E-16 6.6E-21 162.5 16.5 77 248-325 165-257 (261)
373 cd03280 ABC_MutS2 MutS2 homolo 99.7 8.7E-17 1.9E-21 158.8 11.8 127 189-325 24-170 (200)
374 KOG0056 Heavy metal exporter H 99.7 1E-16 2.2E-21 175.0 13.2 158 163-325 536-752 (790)
375 COG4178 ABC-type uncharacteriz 99.7 3.8E-16 8.3E-21 176.4 16.7 153 162-319 390-587 (604)
376 COG4778 PhnL ABC-type phosphon 99.7 1.3E-16 2.9E-21 155.5 10.8 155 164-319 4-226 (235)
377 cd03240 ABC_Rad50 The catalyti 99.7 3.7E-16 8E-21 155.6 12.4 131 189-321 20-198 (204)
378 PF00005 ABC_tran: ABC transpo 99.7 3.7E-17 8E-22 149.9 4.3 93 189-281 8-137 (137)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.3E-15 2.9E-20 155.2 15.1 71 248-319 162-242 (251)
380 KOG0054 Multidrug resistance-a 99.6 2.1E-15 4.5E-20 182.6 18.3 168 163-346 1137-1364(1381)
381 KOG0066 eIF2-interacting prote 99.6 4.9E-16 1.1E-20 167.9 10.0 164 159-326 581-782 (807)
382 COG1245 Predicted ATPase, RNas 99.6 8.1E-16 1.8E-20 167.3 11.2 153 164-319 342-530 (591)
383 KOG0927 Predicted transporter 99.6 5.2E-16 1.1E-20 171.5 8.0 161 160-324 385-585 (614)
384 KOG0054 Multidrug resistance-a 99.6 3.4E-15 7.4E-20 180.8 15.6 163 162-327 516-724 (1381)
385 COG5265 ATM1 ABC-type transpor 99.6 2.8E-15 6.2E-20 162.0 13.3 165 164-345 262-487 (497)
386 COG1129 MglA ABC-type sugar tr 99.6 6.6E-15 1.4E-19 163.6 14.7 157 164-329 263-485 (500)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1E-14 2.2E-19 144.8 14.6 127 194-321 23-191 (198)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.6 5.1E-15 1.1E-19 150.9 12.4 70 250-320 153-233 (247)
389 KOG0060 Long-chain acyl-CoA tr 99.6 2.5E-14 5.4E-19 159.3 14.7 157 161-321 430-642 (659)
390 cd03227 ABC_Class2 ABC-type Cl 99.5 3E-14 6.4E-19 136.6 11.2 126 189-319 18-154 (162)
391 cd03243 ABC_MutS_homologs The 99.5 2.4E-14 5.2E-19 141.6 10.8 136 184-324 20-169 (202)
392 cd03239 ABC_SMC_head The struc 99.5 1E-13 2.2E-18 135.7 14.3 121 194-320 24-172 (178)
393 KOG2355 Predicted ABC-type tra 99.5 6.4E-14 1.4E-18 140.3 12.6 162 159-325 8-228 (291)
394 TIGR00630 uvra excinuclease AB 99.5 1.6E-13 3.6E-18 162.9 17.8 77 248-325 824-916 (924)
395 PRK00349 uvrA excinuclease ABC 99.5 2.7E-13 5.9E-18 161.3 18.0 78 248-326 826-919 (943)
396 PRK00635 excinuclease ABC subu 99.5 2.8E-13 6E-18 168.1 17.1 78 249-327 806-899 (1809)
397 KOG0062 ATPase component of AB 99.5 1.2E-13 2.6E-18 152.3 12.3 165 160-327 358-561 (582)
398 cd03283 ABC_MutS-like MutS-lik 99.5 7.2E-13 1.6E-17 131.9 13.9 125 183-311 15-154 (199)
399 cd03285 ABC_MSH2_euk MutS2 hom 99.4 7.3E-13 1.6E-17 134.0 13.4 133 189-326 27-173 (222)
400 COG1245 Predicted ATPase, RNas 99.4 3.6E-13 7.7E-18 147.0 10.6 147 170-320 80-288 (591)
401 COG4170 SapD ABC-type antimicr 99.4 2.5E-13 5.4E-18 136.5 8.4 159 164-323 3-237 (330)
402 KOG0065 Pleiotropic drug resis 99.4 9.9E-14 2.2E-18 165.7 5.7 141 182-322 804-1008(1391)
403 COG4615 PvdE ABC-type sideroph 99.4 8.5E-13 1.8E-17 142.1 12.0 157 164-327 322-530 (546)
404 KOG0066 eIF2-interacting prote 99.4 9.3E-14 2E-18 150.5 3.1 156 165-325 265-489 (807)
405 COG4138 BtuD ABC-type cobalami 99.4 1.1E-13 2.4E-18 135.9 3.3 135 189-325 22-212 (248)
406 cd03277 ABC_SMC5_euk Eukaryoti 99.4 2.1E-12 4.7E-17 129.8 12.1 74 249-322 123-211 (213)
407 cd03282 ABC_MSH4_euk MutS4 hom 99.4 1.5E-12 3.2E-17 130.4 10.7 121 189-313 26-159 (204)
408 KOG0064 Peroxisomal long-chain 99.4 7.2E-13 1.6E-17 146.4 9.0 136 189-325 505-689 (728)
409 TIGR02788 VirB11 P-type DNA tr 99.4 5.4E-12 1.2E-16 133.3 12.7 220 98-324 5-271 (308)
410 cd03241 ABC_RecN RecN ATPase i 99.3 1.1E-11 2.3E-16 128.8 12.7 70 252-322 170-249 (276)
411 smart00534 MUTSac ATPase domai 99.3 5.1E-12 1.1E-16 123.8 9.2 110 195-314 2-130 (185)
412 cd03281 ABC_MSH5_euk MutS5 hom 99.3 2.7E-11 5.8E-16 121.9 12.0 113 189-312 24-161 (213)
413 COG2401 ABC-type ATPase fused 99.2 2.5E-11 5.4E-16 131.6 10.5 137 184-322 398-586 (593)
414 COG3845 ABC-type uncharacteriz 99.2 1.7E-10 3.6E-15 127.5 15.2 160 162-327 255-485 (501)
415 cd03284 ABC_MutS1 MutS1 homolo 99.2 5E-11 1.1E-15 120.2 10.0 128 193-324 31-171 (216)
416 PRK13764 ATPase; Provisional 99.2 4.6E-10 9.9E-15 128.3 18.0 212 103-327 147-396 (602)
417 TIGR01420 pilT_fam pilus retra 99.2 4.7E-10 1E-14 120.4 16.1 205 101-316 15-240 (343)
418 cd01131 PilT Pilus retraction 99.2 1.8E-10 3.8E-15 114.4 11.7 117 193-318 2-121 (198)
419 cd03242 ABC_RecF RecF is a rec 99.1 3.2E-10 6.8E-15 117.5 12.9 72 251-323 182-269 (270)
420 PRK00409 recombination and DNA 99.1 3.1E-10 6.7E-15 133.6 13.1 121 192-317 327-462 (782)
421 PRK13695 putative NTPase; Prov 99.1 3.7E-10 7.9E-15 109.1 10.2 133 194-328 2-158 (174)
422 TIGR01069 mutS2 MutS2 family p 99.1 1.4E-10 3.1E-15 136.2 8.4 116 189-309 318-449 (771)
423 cd01130 VirB11-like_ATPase Typ 99.1 3.6E-10 7.7E-15 110.8 9.2 122 183-311 16-141 (186)
424 TIGR02525 plasmid_TraJ plasmid 99.1 1.6E-09 3.4E-14 117.9 14.9 206 98-311 22-266 (372)
425 cd01124 KaiC KaiC is a circadi 99.0 6.4E-10 1.4E-14 106.9 6.8 125 194-319 1-163 (187)
426 TIGR02782 TrbB_P P-type conjug 99.0 6E-09 1.3E-13 110.3 14.8 205 97-310 16-244 (299)
427 KOG0063 RNAse L inhibitor, ABC 99.0 8.8E-10 1.9E-14 120.1 7.7 128 192-319 367-531 (592)
428 PRK13900 type IV secretion sys 99.0 7E-09 1.5E-13 111.3 13.9 208 97-310 21-275 (332)
429 cd03287 ABC_MSH3_euk MutS3 hom 99.0 3.7E-09 8.1E-14 107.5 11.0 119 189-311 28-160 (222)
430 smart00382 AAA ATPases associa 99.0 6.7E-09 1.4E-13 91.2 11.2 111 192-304 2-125 (148)
431 PRK13833 conjugal transfer pro 98.9 2.1E-08 4.6E-13 107.4 16.4 204 97-310 28-255 (323)
432 PF00437 T2SE: Type II/IV secr 98.9 3.5E-09 7.6E-14 108.9 10.0 204 98-310 11-237 (270)
433 TIGR02524 dot_icm_DotB Dot/Icm 98.9 1.6E-08 3.6E-13 109.6 14.8 126 189-317 131-258 (358)
434 TIGR00630 uvra excinuclease AB 98.9 3.3E-09 7.1E-14 126.7 10.2 78 247-325 482-574 (924)
435 PRK08533 flagellar accessory p 98.9 8.7E-09 1.9E-13 104.9 11.7 127 164-303 7-161 (230)
436 cd01120 RecA-like_NTPases RecA 98.9 8.3E-09 1.8E-13 95.0 10.0 115 194-309 1-141 (165)
437 PRK00349 uvrA excinuclease ABC 98.9 4.2E-09 9E-14 126.1 9.8 78 247-325 484-576 (943)
438 cd01129 PulE-GspE PulE/GspE Th 98.9 1E-08 2.3E-13 106.6 10.8 112 190-310 78-189 (264)
439 PRK13894 conjugal transfer ATP 98.9 7.7E-08 1.7E-12 102.9 17.6 205 97-311 32-260 (319)
440 KOG0065 Pleiotropic drug resis 98.8 6.3E-09 1.4E-13 125.5 8.9 146 183-328 129-345 (1391)
441 TIGR03819 heli_sec_ATPase heli 98.8 7.1E-08 1.5E-12 104.0 15.8 206 98-310 62-293 (340)
442 PF02463 SMC_N: RecF/RecN/SMC 98.8 4.4E-08 9.6E-13 97.5 12.8 66 251-317 135-210 (220)
443 cd03286 ABC_MSH6_euk MutS6 hom 98.8 4.2E-08 9E-13 99.7 12.5 120 189-312 27-160 (218)
444 PRK13851 type IV secretion sys 98.8 5.3E-08 1.1E-12 105.2 13.6 115 189-310 159-276 (344)
445 PF13304 AAA_21: AAA domain; P 98.8 6.1E-09 1.3E-13 99.4 5.6 57 252-308 236-302 (303)
446 cd02644 R3H_jag R3H domain fou 98.8 1.1E-08 2.3E-13 86.1 6.0 57 557-614 10-67 (67)
447 COG0178 UvrA Excinuclease ATPa 98.7 1.7E-07 3.6E-12 108.9 15.9 68 250-318 820-897 (935)
448 PRK09183 transposase/IS protei 98.7 1E-08 2.2E-13 106.4 5.2 99 189-304 99-205 (259)
449 PRK00635 excinuclease ABC subu 98.7 4.7E-08 1E-12 122.5 10.6 77 248-325 472-563 (1809)
450 PRK06526 transposase; Provisio 98.6 1.4E-08 3E-13 105.3 3.5 101 188-305 94-201 (254)
451 smart00393 R3H Putative single 98.6 9.3E-08 2E-12 82.3 8.0 65 550-614 15-79 (79)
452 PRK06067 flagellar accessory p 98.6 9.1E-08 2E-12 96.7 7.5 117 189-307 22-167 (234)
453 COG2805 PilT Tfp pilus assembl 98.6 2.7E-07 5.8E-12 97.6 11.2 206 101-315 18-242 (353)
454 TIGR02533 type_II_gspE general 98.6 2.5E-07 5.4E-12 104.2 10.9 111 191-310 241-351 (486)
455 PRK08181 transposase; Validate 98.6 4.9E-08 1.1E-12 102.1 4.4 101 187-304 101-208 (269)
456 cd01128 rho_factor Transcripti 98.5 2.5E-07 5.5E-12 95.8 8.8 138 183-323 5-211 (249)
457 TIGR00618 sbcc exonuclease Sbc 98.5 2.6E-07 5.6E-12 112.4 9.9 76 247-322 945-1037(1042)
458 TIGR00634 recN DNA repair prot 98.5 2.7E-07 6E-12 105.3 9.0 70 251-321 439-518 (563)
459 PF01424 R3H: R3H domain; Int 98.5 2.4E-07 5.2E-12 76.0 6.2 58 556-613 5-62 (63)
460 cd02325 R3H R3H domain. The na 98.5 2.7E-07 5.8E-12 72.8 6.2 57 557-613 2-59 (59)
461 PRK06793 fliI flagellum-specif 98.5 5.7E-07 1.2E-11 99.8 9.9 150 166-324 132-301 (432)
462 COG0630 VirB11 Type IV secreto 98.5 2.4E-06 5.2E-11 91.2 14.3 206 98-310 25-256 (312)
463 COG2804 PulE Type II secretory 98.4 7.4E-07 1.6E-11 99.7 10.4 112 190-310 256-367 (500)
464 PRK10436 hypothetical protein; 98.4 9.1E-07 2E-11 99.1 10.9 112 190-310 216-327 (462)
465 PTZ00132 GTP-binding nuclear p 98.4 5.2E-07 1.1E-11 89.6 7.7 35 257-291 157-196 (215)
466 PRK10869 recombination and rep 98.4 8.3E-07 1.8E-11 101.4 9.5 70 251-321 429-508 (553)
467 TIGR02538 type_IV_pilB type IV 98.4 1.3E-06 2.8E-11 100.1 10.4 112 190-310 314-425 (564)
468 KOG0063 RNAse L inhibitor, ABC 98.4 4.8E-07 1E-11 99.2 6.0 131 189-320 97-288 (592)
469 PHA02562 46 endonuclease subun 98.3 8.9E-07 1.9E-11 100.0 8.2 75 249-324 465-556 (562)
470 cd00009 AAA The AAA+ (ATPases 98.3 1.8E-06 3.9E-11 76.9 8.5 99 191-306 18-131 (151)
471 PRK05399 DNA mismatch repair p 98.3 4.8E-06 1E-10 99.6 13.9 115 190-309 605-734 (854)
472 PRK07721 fliI flagellum-specif 98.3 3.7E-06 8E-11 93.7 11.9 140 183-325 147-334 (438)
473 PRK03918 chromosome segregatio 98.3 2.3E-06 4.9E-11 101.7 10.6 71 248-319 784-867 (880)
474 COG3910 Predicted ATPase [Gene 98.3 3.5E-06 7.6E-11 84.4 9.3 133 192-326 37-209 (233)
475 PRK10246 exonuclease subunit S 98.2 2.9E-06 6.4E-11 103.4 9.9 74 247-320 944-1032(1047)
476 PRK04296 thymidine kinase; Pro 98.2 2E-05 4.3E-10 78.0 13.9 123 192-319 2-140 (190)
477 cd01125 repA Hexameric Replica 98.2 1.1E-06 2.5E-11 89.2 5.2 114 192-306 1-160 (239)
478 PF00004 AAA: ATPase family as 98.2 5E-06 1.1E-10 74.7 8.7 93 195-306 1-113 (132)
479 PRK01156 chromosome segregatio 98.2 5.7E-06 1.2E-10 99.0 10.9 78 248-326 797-891 (895)
480 PTZ00454 26S protease regulato 98.1 7.3E-06 1.6E-10 90.3 8.8 100 189-307 176-296 (398)
481 TIGR00606 rad50 rad50. This fa 98.1 4.9E-06 1.1E-10 103.6 8.1 63 251-313 1198-1278(1311)
482 PF00488 MutS_V: MutS domain V 98.1 3E-05 6.5E-10 79.7 11.5 113 193-310 44-171 (235)
483 PF03266 NTPase_1: NTPase; In 98.0 5.7E-06 1.2E-10 80.9 5.1 117 194-314 1-147 (168)
484 COG1618 Predicted nucleotide k 98.0 1.7E-05 3.7E-10 77.7 8.2 109 193-305 6-140 (179)
485 PRK14088 dnaA chromosomal repl 98.0 6.2E-06 1.3E-10 91.8 5.8 124 193-331 131-265 (440)
486 PRK06995 flhF flagellar biosyn 98.0 1.6E-05 3.5E-10 89.6 9.1 87 189-281 253-345 (484)
487 COG5008 PilU Tfp pilus assembl 98.0 4.6E-05 1E-09 79.9 11.7 207 104-316 23-245 (375)
488 PRK00064 recF recombination pr 98.0 1.8E-05 3.8E-10 86.0 8.8 75 249-323 270-359 (361)
489 PTZ00361 26 proteosome regulat 98.0 2.5E-05 5.5E-10 87.2 9.5 102 189-309 214-336 (438)
490 TIGR02168 SMC_prok_B chromosom 98.0 1.5E-05 3.3E-10 96.2 8.4 70 248-318 1085-1164(1179)
491 PRK14722 flhF flagellar biosyn 98.0 1.6E-05 3.4E-10 87.1 7.6 97 188-291 133-237 (374)
492 TIGR01070 mutS1 DNA mismatch r 97.9 7.4E-05 1.6E-09 89.4 13.1 113 193-310 593-720 (840)
493 PRK06893 DNA replication initi 97.9 3.6E-05 7.8E-10 78.3 9.1 87 193-305 40-134 (229)
494 TIGR03881 KaiC_arch_4 KaiC dom 97.9 8.4E-05 1.8E-09 74.6 11.3 39 189-229 17-56 (229)
495 cd02023 UMPK Uridine monophosp 97.9 1.7E-05 3.7E-10 78.0 6.0 91 194-290 1-118 (198)
496 PF01695 IstB_IS21: IstB-like 97.9 7.6E-06 1.6E-10 80.6 3.3 78 188-282 43-120 (178)
497 TIGR00416 sms DNA repair prote 97.9 3.7E-05 8E-10 86.2 9.1 128 189-321 91-246 (454)
498 cd01121 Sms Sms (bacterial rad 97.9 2.2E-05 4.7E-10 85.9 6.9 127 189-320 79-233 (372)
499 PRK13830 conjugal transfer pro 97.9 5.3E-05 1.2E-09 90.5 10.6 57 267-323 649-722 (818)
500 TIGR01241 FtsH_fam ATP-depende 97.9 2.9E-05 6.3E-10 87.5 7.9 68 193-279 89-156 (495)
No 1
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=8.6e-48 Score=385.33 Aligned_cols=280 Identities=38% Similarity=0.571 Sum_probs=257.6
Q ss_pred HHHHHHHHhcCHHHHHHHhcCCCccceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCC-----CCccc
Q 038101 74 IELGRLLALLPEEMRIRVSEHPELYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFA-----VDNRA 148 (660)
Q Consensus 74 ~~L~~ll~~LP~~ir~~l~~~~~~~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs-----~d~R~ 148 (660)
|+|++++++||+.+++.++++|++.+|+|||+|++||++++|++.+.|++..+||.||++++++++|.|| +++|+
T Consensus 1 ~dleei~~iLPe~i~~~l~~~p~~~~l~Evri~v~Rp~e~~~~~~~vyl~~~~vT~ed~~~~~~rls~ysiys~e~elr~ 80 (308)
T COG3854 1 DDLEEIFSILPEKIRQILKEIPDRNNLEEVRIRVNRPLEAIFPGQPVYLSYIGVTKEDLQKTLNRLSGYSIYSVEEELRA 80 (308)
T ss_pred CCHHHHHHhChHHHHHHHHhCCccccceeeEeecCCCceEecCCCceecccccccHHHHHHHHHHhcccccccchhhhhc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999655 78999
Q ss_pred e--eeccceeeccccCceEE---------EEeEEEEECcccccccc-cccccccCCcE-EEEEcCCCCcHHHHHHHHHhc
Q 038101 149 G--ISRTLHRISAIRNRKGA---------IIGLTCRVGRAVSGSAN-LLQDLVQDGAS-LLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 149 G--I~rtlhRIs~irn~~Le---------I~~Lt~rygr~v~G~a~-iL~dlI~~Ge~-ilIlGPnGsGKTTLLR~Iagl 215 (660)
| +.+++|||+..+|..++ |.++|+|+++++.|++. +++++.+.|.. ++|+||||||||||||+||++
T Consensus 81 Gyit~~ggHRVg~~g~~~~E~~~vkt~rdI~slniRv~r~v~Gt~~~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~ 160 (308)
T COG3854 81 GYITIRGGHRVGLAGNVTLEEGKVKTIRDISSLNIRVARQVFGTANPLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARL 160 (308)
T ss_pred ceeEeeccceeeeccccccccccccceeeeceeeeeehhhhhccchHHHHHHHhcCceeeEEecCCCCChHHHHHHHHHH
Confidence 9 56999999999999888 99999999999999998 77889999976 999999999999999999999
Q ss_pred cccC----CCCeEEEEcCCCccccC-CCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 216 LAND----YKKRVMIVDTSSEIGGN-GDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 216 L~p~----~GkrV~~Vdq~~eIa~~-~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
++.+ .+++|+++|+++||+++ .++|+.+++ +|++++++|.|+.+|++++.+|+|+|||+||+++.+|+.++.+
T Consensus 161 ~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g--~R~dVld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~t 238 (308)
T COG3854 161 LSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRG--RRMDVLDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILT 238 (308)
T ss_pred hhccccccCCceEEEEeccchhhccccCCchhhhh--hhhhhcccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHH
Confidence 9987 67899999999999884 456665555 5999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHHHhhcCCCceeEEEE
Q 038101 291 IAQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVLERKGPSTFSCAVE 356 (660)
Q Consensus 291 i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~Iler~~~p~f~~~Ve 356 (660)
+.++|+++|.|+|+..+.+.+++|.+..+. +++++..+++.++++|..+..+.+.+++.|...++
T Consensus 239 a~~~GVkli~TaHG~~iedl~krp~lkdlv-~i~af~r~~elsrr~g~g~v~~ird~~~~~~~~~~ 303 (308)
T COG3854 239 ALHAGVKLITTAHGNGIEDLIKRPTLKDLV-EIQAFDRGIELSRRRGPGTVVLIRDAPPNFKERVE 303 (308)
T ss_pred HHhcCcEEEEeeccccHHHhhcChhHHHHH-hhhHHHHHHHHhhccCCCeEEEEecCCCcHHHHhh
Confidence 999999999999999999999999998888 67888889999999998888888888888765443
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-32 Score=273.92 Aligned_cols=154 Identities=21% Similarity=0.352 Sum_probs=131.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+|+||.. .+|+++ |.+|+.++|+||+|||||||||||+++..++.|.
T Consensus 2 mi~i~~l~K~fg~~-----~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 2 MIEIKNLSKSFGDK-----EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred eEEEEeeeEEeCCe-----EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHH
Confidence 57899999999988 999998 9999999999999999999999999999998663
Q ss_pred -eEEEEcCCCccccCCCCCCC--------------------------------CCCcc--ccCCCCCHHHHHHHHHHHHH
Q 038101 223 -RVMIVDTSSEIGGNGDIPHP--------------------------------GIGNA--RRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~~~ip~~--------------------------------~Lg~~--rrl~vLSgG~qqrv~IA~aL 267 (660)
+||+|+|..++ +||. ++.+. .+...|||||||||+|||||
T Consensus 77 ~~vGmVFQ~fnL-----FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 77 RKVGMVFQQFNL-----FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HhcCeecccccc-----cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 23444444333 4553 22221 35678999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+++|+++++||||++|||+...++ ++.|+|+|++||++.++..++|++++|+.|.+...+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 999999999999999999987664 789999999999999999999999999999876543
No 3
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=1.4e-30 Score=267.70 Aligned_cols=159 Identities=20% Similarity=0.317 Sum_probs=136.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|++. .+++++ +.+|++++|+||||||||||||+|+|+++|..| +
T Consensus 2 ~L~~~~ls~~y~~~-----~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk 76 (258)
T COG1120 2 MLEVENLSFGYGGK-----PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAK 76 (258)
T ss_pred eeEEEEEEEEECCe-----eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhh
Confidence 47899999999987 899998 899999999999999999999999999998744 4
Q ss_pred eEEEEcCCCcccc---------CCCCCCCCCCc-----------------------cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGG---------NGDIPHPGIGN-----------------------ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~---------~~~ip~~~Lg~-----------------------~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+++|++|...... .+..||.++.. .|.+..||||||||++||+|++.+
T Consensus 77 ~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 77 KLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred hEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 7899999864432 24555532211 166789999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++|+|||||+.||...+.++ .++|.|||++.||.+.+..+||+++.|.+|++.+.+
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G 221 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQG 221 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeec
Confidence 999999999999999987665 367999999999999999999999999999987654
No 4
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=276.61 Aligned_cols=167 Identities=22% Similarity=0.309 Sum_probs=142.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------Ce
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KR 223 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------kr 223 (660)
..++++||+|+||.. .+++|+ |++||++.|+||+|||||||||+|||+..|+.| +.
T Consensus 4 ~~l~i~~v~k~yg~~-----~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGDF-----TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRP 78 (352)
T ss_pred ceEEEEeeeeecCCe-----eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcc
Confidence 468899999999976 899988 999999999999999999999999999999965 34
Q ss_pred EEEEcCCCccccCCCCCCCC--------------------------------CCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 224 VMIVDTSSEIGGNGDIPHPG--------------------------------IGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 224 V~~Vdq~~eIa~~~~ip~~~--------------------------------Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
|++|+|+.-+ +||+. +.. .|+..+|||||||||+|||||+.
T Consensus 79 ig~VFQ~YAL-----FPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~ 153 (352)
T COG3842 79 IGMVFQSYAL-----FPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP 153 (352)
T ss_pred cceeecCccc-----CCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc
Confidence 5666665433 34431 111 25678899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHH
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKT 341 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~ 341 (660)
+|+||+||||.++||..-+..+ .+.|+|.|++|||.+++..++|++.+|..|+|.+++ ++++
T Consensus 154 ~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~g----------tP~e 223 (352)
T COG3842 154 EPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG----------TPEE 223 (352)
T ss_pred CcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecC----------CHHH
Confidence 9999999999999999987776 467999999999999999999999999999998764 7888
Q ss_pred HHhhcCCC
Q 038101 342 VLERKGPS 349 (660)
Q Consensus 342 Iler~~~p 349 (660)
+++++...
T Consensus 224 iY~~P~~~ 231 (352)
T COG3842 224 IYERPATR 231 (352)
T ss_pred HhhCcchH
Confidence 88876543
No 5
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=263.64 Aligned_cols=174 Identities=20% Similarity=0.320 Sum_probs=141.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC--C-------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS--S------- 231 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~--~------- 231 (660)
+++++|++|+|+.. .+++++ |+.|++++|+||+||||||+||+|+|++.|+.|. |.+-.+. +
T Consensus 1 MI~~~nvsk~y~~~-----~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~-I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGNK-----KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE-ILIDGEDISDLDPVELR 74 (309)
T ss_pred CceeeeeehhcCCc-----eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCce-EEECCeecccCCHHHHH
Confidence 36899999999977 899988 9999999999999999999999999999999773 3221111 0
Q ss_pred -ccc----cCCCCCCC-------------------------------CCCc----cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 232 -EIG----GNGDIPHP-------------------------------GIGN----ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 232 -eIa----~~~~ip~~-------------------------------~Lg~----~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.|+ ..+.+||+ ++.. .|....|||||||||.++||++.+|
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 111 12445654 2221 2667899999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHHH
Q 038101 272 QVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVL 343 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~Il 343 (660)
++|++|||+++|||..+..+ ++.|+|+|++|||++++-.++|++++|..|+++++. ++++++
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~----------~P~~il 224 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD----------TPDEIL 224 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC----------CHHHHH
Confidence 99999999999999988776 467999999999999999999999999999998764 677777
Q ss_pred hhcCCCceeE
Q 038101 344 ERKGPSTFSC 353 (660)
Q Consensus 344 er~~~p~f~~ 353 (660)
.++++.....
T Consensus 225 ~~Pan~FV~~ 234 (309)
T COG1125 225 ANPANDFVED 234 (309)
T ss_pred hCccHHHHHH
Confidence 7765544433
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.3e-29 Score=252.41 Aligned_cols=153 Identities=18% Similarity=0.265 Sum_probs=127.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------RVMIV 227 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------rV~~V 227 (660)
.+.++++++.|+.. .+|+++ |.+||+++|+||+|||||||||.|||+..|+.|. .++|+
T Consensus 3 ~l~i~~v~~~f~~~-----~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~v 77 (248)
T COG1116 3 LLEIEGVSKSFGGV-----EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYV 77 (248)
T ss_pred eEEEEeeEEEeCce-----EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEE
Confidence 46899999999986 899998 9999999999999999999999999999998552 46677
Q ss_pred cCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 228 DTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 228 dq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
+|...+.- ..+.+ ..++.. .++..+|||||||||+||||++++|+||+||||
T Consensus 78 FQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 78 FQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred eccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 77643210 00011 013322 257789999999999999999999999999999
Q ss_pred CCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 280 GTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 280 gsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
+++||+..+..+ .+.++|||++|||.+++-.++|++++|..+
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999998776 467899999999999999999999999884
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.4e-29 Score=254.25 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=129.7
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeE
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------KRV 224 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------krV 224 (660)
..++++|||++|+.. .+|+++ +.+|++++|+||||+|||||+|.|+|++.|..| .+|
T Consensus 3 ~~i~v~nl~v~y~~~-----~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~I 77 (254)
T COG1121 3 PMIEVENLTVSYGNR-----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRI 77 (254)
T ss_pred cEEEEeeeEEEECCE-----eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeE
Confidence 468899999999975 689988 999999999999999999999999999998743 369
Q ss_pred EEEcCCCcccc-----------CCCCCCC---------------------CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 225 MIVDTSSEIGG-----------NGDIPHP---------------------GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 225 ~~Vdq~~eIa~-----------~~~ip~~---------------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+||+|...+.. ++.+++. ++.. .++++.|||||+||+.|||||+.+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~ 157 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN 157 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC
Confidence 99999764421 1212221 2221 268899999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
|++|+||||++|+|+.+...+ ++.|+||++++||+..+..++|+++.++..-
T Consensus 158 p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 158 PDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 999999999999999997775 4569999999999999999999999886443
No 8
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=266.38 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=140.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+|+||.. .+++++ |++||+++|+||||||||||||+|||+..++.| +.|
T Consensus 3 ~i~l~~v~K~yg~~-----~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF-----EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGI 77 (338)
T ss_pred EEEEeeeEEEcCCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCE
Confidence 57899999999975 378877 999999999999999999999999999999865 356
Q ss_pred EEEcCCCccccCCCCCCC-------------------------------CCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 225 MIVDTSSEIGGNGDIPHP-------------------------------GIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 225 ~~Vdq~~eIa~~~~ip~~-------------------------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+|+.-+ +||+ ++.. .|+...|||||||||+|+||++.+|
T Consensus 78 amVFQ~yAL-----yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P 152 (338)
T COG3839 78 AMVFQNYAL-----YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP 152 (338)
T ss_pred EEEeCCccc-----cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence 666665433 3443 1211 2667899999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHHH
Q 038101 272 QVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVL 343 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~Il 343 (660)
+++++|||.++||+.-+..+ .+.|.|+|.+|||..++..++|++.+|..|++.+++ ++.+++
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g----------~p~ely 222 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVG----------TPLELY 222 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecC----------ChHHHh
Confidence 99999999999999987665 357999999999999999999999999999998865 677788
Q ss_pred hhcCCCc
Q 038101 344 ERKGPST 350 (660)
Q Consensus 344 er~~~p~ 350 (660)
+++.+-.
T Consensus 223 ~~P~n~f 229 (338)
T COG3839 223 ERPANLF 229 (338)
T ss_pred hCccchh
Confidence 7765433
No 9
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-28 Score=256.88 Aligned_cols=166 Identities=21% Similarity=0.315 Sum_probs=139.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
++.+++++++|++. .+++++ |+.|+.++|+||||||||||||+|||++.|+.|
T Consensus 2 ~i~i~~~~~~~~~~-----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF-----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred ceeehhhhhhcccc-----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 46789999999987 788887 999999999999999999999999999999855
Q ss_pred CeEEEEcCCCccccCCCCCCC------------------------------------CCCccccCCCCCHHHHHHHHHHH
Q 038101 222 KRVMIVDTSSEIGGNGDIPHP------------------------------------GIGNARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 222 krV~~Vdq~~eIa~~~~ip~~------------------------------------~Lg~~rrl~vLSgG~qqrv~IA~ 265 (660)
++|||+.|...+ ++|+ +++ .++..+|||||+||+++||
T Consensus 77 R~VGfvFQ~YAL-----F~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 77 RKVGFVFQHYAL-----FPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-DRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred cceeEEEechhh-----cccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-hcCchhcChHHHHHHHHHH
Confidence 357777765432 1221 111 2567789999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhccc
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRG 337 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~G 337 (660)
|++..|+||+||||+++||+..+.++ .+.|+|.|++|||.+++..+||+++.|.+|+|..++
T Consensus 151 ALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg---------- 220 (345)
T COG1118 151 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG---------- 220 (345)
T ss_pred HhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC----------
Confidence 99999999999999999999998776 245999999999999999999999999999998865
Q ss_pred chHHHHhhcCCCc
Q 038101 338 VQKTVLERKGPST 350 (660)
Q Consensus 338 t~~~Iler~~~p~ 350 (660)
++.++++.+..+.
T Consensus 221 ~p~ev~~~P~s~f 233 (345)
T COG1118 221 PPDEVYDHPASRF 233 (345)
T ss_pred CHHHHhcCCCccc
Confidence 5667777665443
No 10
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.4e-28 Score=255.57 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=133.0
Q ss_pred eEEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------C
Q 038101 164 KGAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----------------k 222 (660)
.+++.||+++|+ +. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +
T Consensus 4 ~i~~~~l~k~~~~~~-----~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~ 78 (293)
T COG1131 4 VIEVRNLTKKYGGDK-----TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRR 78 (293)
T ss_pred eeeecceEEEeCCCC-----EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHh
Confidence 357899999999 56 899998 999999999999999999999999999999854 2
Q ss_pred eEEEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
+|+|+++...+.. +...+ ..++.. .+++..+|+|||||++||+|++++|++|
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 4778777654311 11111 124443 3567889999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcC-CEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRG-IQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~G-vtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||||||+|||+.++..+ ++.| +||++|||.++.++.+||+++++..|++.+.+
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999998876 4556 89999999999999999999999999987754
No 11
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.96 E-value=3.8e-28 Score=254.98 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=133.0
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------- 221 (660)
....++++||+|+|+.. .+|+++ |++|++++|+||||||||||+++|+|++.|+.|
T Consensus 4 ~~~~i~i~~l~k~~~~~-----~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~ 78 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDK-----LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA 78 (306)
T ss_pred CCceEEEEeEEEEECCe-----EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHH
Confidence 34568999999999865 788888 899999999999999999999999999998854
Q ss_pred -CeEEEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
++++|+++...+.. ..+.+ ..++.. .+++..+|+|||||++||+|++++|+
T Consensus 79 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ 158 (306)
T PRK13537 79 RQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPD 158 (306)
T ss_pred HhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCC
Confidence 24778877643321 01111 113322 25677899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|||||||++||+.++..+ ++.|.|||++||++++++.+||+++.+..|++.+.
T Consensus 159 lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~ 219 (306)
T PRK13537 159 VLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE 219 (306)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998776 34699999999999999999999999999998764
No 12
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.95 E-value=1.4e-27 Score=254.67 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=133.5
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------- 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------- 221 (660)
++...++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.|+.|
T Consensus 37 ~~~~~i~i~nl~k~y~~~-----~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDK-----AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARL 111 (340)
T ss_pred CCceeEEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHH
Confidence 445578999999999876 789988 999999999999999999999999999998754
Q ss_pred --CeEEEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 --KRVMIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 --krV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+.++|+++...+.. ..... ..++.. .+++..||+|||||++||+|++++|
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDP 191 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 24777776543311 01111 013332 3567789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++|||||||++||+.++..+ .+.|.|||++||++++++.+||+++.+..|++...
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999998776 34699999999999999999999999999998654
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.1e-28 Score=242.33 Aligned_cols=159 Identities=21% Similarity=0.277 Sum_probs=127.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------e
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------R 223 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------r 223 (660)
++++.+|+|+|+.. .++++|+ ++.|++++|+||||+||||+||+|+.++.|+.|+ +
T Consensus 1 Ml~v~~l~K~y~~~----v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~ 76 (245)
T COG4555 1 MLEVTDLTKSYGSK----VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRK 76 (245)
T ss_pred CeeeeehhhhccCH----HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhh
Confidence 36899999999985 2588888 8999999999999999999999999999999774 1
Q ss_pred EEEEcCCCccc-------------cCCCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 038101 224 VMIVDTSSEIG-------------GNGDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIV 275 (660)
Q Consensus 224 V~~Vdq~~eIa-------------~~~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLI 275 (660)
|+++.....+. ...++.. +++.. .+|...+|.||||||.||+|++|+|++||
T Consensus 77 IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred cceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 22222111110 0001100 12221 26778899999999999999999999999
Q ss_pred EeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 276 IDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 276 LDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|||++|||..+.+.+ ++.|.+||++||.+.+++.+||++++++.|.+..-
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEc
Confidence 9999999999998776 46799999999999999999999999999998653
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.2e-27 Score=242.26 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=133.0
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
...+++++|+++||.. .+++++ |.+|++++|+||+|+|||||||.|.|++.|+.|
T Consensus 6 ~~~I~vr~v~~~fG~~-----~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~ 80 (263)
T COG1127 6 EPLIEVRGVTKSFGDR-----VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80 (263)
T ss_pred cceEEEeeeeeecCCE-----EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence 4568999999999988 899988 999999999999999999999999999999865
Q ss_pred ----CeEEEEcCCCccccC--------------CCCCC-------------CCCCc---cccCCCCCHHHHHHHHHHHHH
Q 038101 222 ----KRVMIVDTSSEIGGN--------------GDIPH-------------PGIGN---ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 ----krV~~Vdq~~eIa~~--------------~~ip~-------------~~Lg~---~rrl~vLSgG~qqrv~IA~aL 267 (660)
+++|+++|..-+... ..+|. .++.. .+...+|||||++|++||||+
T Consensus 81 ~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi 160 (263)
T COG1127 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI 160 (263)
T ss_pred HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH
Confidence 356666665433211 01111 02222 145678999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+.+|++|++||||+||||.+...+ ...|.|+|++|||.+.+..+||+++++.+|++...+
T Consensus 161 aldPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~G 228 (263)
T COG1127 161 ALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEG 228 (263)
T ss_pred hcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeC
Confidence 999999999999999999987665 356999999999999999999999999999987643
No 15
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.2e-28 Score=250.90 Aligned_cols=163 Identities=17% Similarity=0.296 Sum_probs=132.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
++++++++|.|.....+...+++++ |++|++++|+|.+|+|||||+|+|.++..|+.|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 3689999999987533345788988 999999999999999999999999999999865
Q ss_pred --CeEEEEcCCCccccC-------------CCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 --KRVMIVDTSSEIGGN-------------GDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~-------------~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|++|+|...+-.. .++|. .++.+ .++..+|||||||||+||||++.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 245666654332110 11111 13332 2466789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||++||+|++|||.....+ ++.|.||+++||.++.+..+||++.+|..|++..-
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999987765 57899999999999999999999999999998763
No 16
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=1.7e-27 Score=240.91 Aligned_cols=157 Identities=17% Similarity=0.274 Sum_probs=126.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
+++.+|++.|+..... ..+|+++ |++||+++|+||+||||||||++|+++..|+.|
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4689999999754222 4688887 999999999999999999999999999999854
Q ss_pred --CeEEEEcCCCcccc-------------CCCCC-------------CCCCCcc---ccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 --KRVMIVDTSSEIGG-------------NGDIP-------------HPGIGNA---RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 --krV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~~---rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+.||||+|...+-. ....+ ..+++.. +++..|||||||||+||||++++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 35778777643210 01111 1144421 45789999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
|++|+.||||.+||......+ .+.|.|||++|||..++. .||+++.+.+|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCee
Confidence 999999999999999987775 356999999999998876 8999999999985
No 17
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=254.73 Aligned_cols=159 Identities=19% Similarity=0.288 Sum_probs=130.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|+.. .+|+++ +++|++++|+||||||||||||+|+|++.++.| ++|
T Consensus 6 ~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGSN-----TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred EEEEEeEEEEECCe-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 57899999999865 678887 999999999999999999999999999998855 356
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
++++|...+... ...+ ..++.. .+++..||+|||||++||+|++.+|++|+|
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 777765432100 0011 012221 256788999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999998776 235999999999999999999999999999987653
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=3e-27 Score=253.48 Aligned_cols=159 Identities=16% Similarity=0.244 Sum_probs=130.1
Q ss_pred eEEEEeEEEEE-Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------Ce
Q 038101 164 KGAIIGLTCRV-GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KR 223 (660)
Q Consensus 164 ~LeI~~Lt~ry-gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------kr 223 (660)
.++++||+++| ++. .+|+++ +.+|++++|+||||||||||||+|+|++.++.| +.
T Consensus 3 ~l~i~~l~~~~~~~~-----~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGKT-----QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCCC-----EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 47899999999 654 688887 899999999999999999999999999998754 24
Q ss_pred EEEEcCCCccccC-------------CCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 038101 224 VMIVDTSSEIGGN-------------GDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIV 275 (660)
Q Consensus 224 V~~Vdq~~eIa~~-------------~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLI 275 (660)
|+|++|...+... ..++. .++.. .+.+..||+|||||++||+|++.+|++||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL 157 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL 157 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7777776433210 00110 12322 25667899999999999999999999999
Q ss_pred EeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 276 IDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 276 LDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 9999999999987765 235999999999999999999999999999997654
No 19
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=6.3e-27 Score=250.78 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=130.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|+.. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +.+
T Consensus 4 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGAF-----TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78 (353)
T ss_pred EEEEEEEEEEeCCe-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 57899999999875 678877 899999999999999999999999999998754 246
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|++|...+... ..++ ..++.. .++...||+|||||++||+|++.+|++|+|
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 777766433210 0010 013322 256778999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|.+|++.+.+
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999987776 235999999999999999999999999999987654
No 20
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.95 E-value=7.2e-27 Score=251.20 Aligned_cols=159 Identities=21% Similarity=0.289 Sum_probs=130.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--C----------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY--K----------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~--G----------------k 222 (660)
.++++||+++|++. .+|+++ +.+|++++|+||||||||||||+|+|++.|+. | +
T Consensus 5 ~l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r 79 (362)
T TIGR03258 5 GIRIDHLRVAYGAN-----TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79 (362)
T ss_pred EEEEEEEEEEECCe-----EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHC
Confidence 47899999999875 688887 89999999999999999999999999999887 5 2
Q ss_pred eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
.|++++|...+... ..++ ..++.. .+++..||+|||||++||+|++.+|++|
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll 159 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 46677665432100 0111 013322 2567889999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------Hhc--CCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 275 VIDEIGTKLEAMAASTI-------AQR--GIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~--GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||||+++||+..+..+ .+. |.|+|++||+.+++..+||++++|..|++...+
T Consensus 160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g 221 (362)
T TIGR03258 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG 221 (362)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999997776 233 899999999999999999999999999987654
No 21
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.95 E-value=6e-27 Score=244.94 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=130.2
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
+..++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.|+.|
T Consensus 2 ~~~i~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDK-----VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred CcEEEEEeEEEEeCCe-----EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 3468899999999865 688888 899999999999999999999999999988644
Q ss_pred CeEEEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 222 KRVMIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 222 krV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
++++|+++...+.. ...+. ..++.. .+++..||+|||||++||+|++++|++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL 156 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 24677776543211 00111 012322 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 157 llLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~ 216 (303)
T TIGR01288 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216 (303)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999998775 34699999999999999999999999999998653
No 22
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.4e-27 Score=238.41 Aligned_cols=159 Identities=19% Similarity=0.318 Sum_probs=131.9
Q ss_pred eEEEEeEEEEE-Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 164 KGAIIGLTCRV-GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 164 ~LeI~~Lt~ry-gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
.++++||++.| ++. .+|.++ |++||+++|+||+|||||||||+|+|+..++.|
T Consensus 3 ~i~~~nl~k~yp~~~-----~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr 77 (258)
T COG3638 3 MIEVKNLSKTYPGGH-----QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77 (258)
T ss_pred eEEEeeeeeecCCCc-----eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH
Confidence 57899999999 665 899988 999999999999999999999999999988744
Q ss_pred ---CeEEEEcCCCccc------------cCCC----------CC------------CCCCCc--cccCCCCCHHHHHHHH
Q 038101 222 ---KRVMIVDTSSEIG------------GNGD----------IP------------HPGIGN--ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 ---krV~~Vdq~~eIa------------~~~~----------ip------------~~~Lg~--~rrl~vLSgG~qqrv~ 262 (660)
+++|+++|...+- ..+. ++ ..++.+ ..+...|||||||||+
T Consensus 78 ~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVa 157 (258)
T COG3638 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVA 157 (258)
T ss_pred HHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHH
Confidence 3577777754321 0010 10 012322 2567889999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||||+.+|++|+.|||++.|||...+.+ .+.|.|||++.|+.+++..+|++++-+..|++.+-+
T Consensus 158 IARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 158 IARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999987765 468999999999999999999999999999997754
No 23
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.95 E-value=8e-27 Score=251.96 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=132.1
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------- 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------- 221 (660)
.....++++|++++|+.. .+|+++ +++|++++|+||||||||||||+|+|++.++.|
T Consensus 10 ~~~~~L~l~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 10 SLSPLVELRGISKSFDGK-----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE 84 (375)
T ss_pred cCCceEEEEEEEEEECCe-----EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH
Confidence 344568999999999865 678877 899999999999999999999999999998744
Q ss_pred -CeEEEEcCCCccccC-------------CCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGGN-------------GDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------------~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
+.++|++|...+... ..++. .++.. .+++..||+|||||++||+|++.+|+
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~ 164 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPK 164 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 347777776432100 00110 12322 24667899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 273 VIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||||||+++||+..+..+ .+.|.|+|++||+..++..++|++++|..|++...+
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999997776 235999999999999999999999999999987653
No 24
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.6e-27 Score=230.67 Aligned_cols=156 Identities=23% Similarity=0.311 Sum_probs=124.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------RVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------rV~ 225 (660)
++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.|+.|. .++
T Consensus 1 l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGSV-----RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred CeeeeeEEEeCCe-----eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 3688999999865 688887 8999999999999999999999999999887542 366
Q ss_pred EEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
|+++...+... ..+. ..++.. .+.+..||+|||||++||++++.+|++||+|
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD 155 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD 155 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 66665322100 0000 112322 2455789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|||++||+.++..+ ++ .|.+||++||+.+++..+||+++.+..|++..
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999997775 23 48999999999999999999999999998753
No 25
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.8e-27 Score=237.60 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=130.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------eEEE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------RVMI 226 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------rV~~ 226 (660)
.+++.+|+|+||.. .+++++ +++|++++++||||+||||++|+|.|++.++.|+ +|||
T Consensus 2 ~L~ie~vtK~Fg~k-----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFGDK-----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76 (300)
T ss_pred ceEEecchhccCce-----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhccc
Confidence 47899999999998 899988 8999999999999999999999999999998662 4566
Q ss_pred EcCCCcc-------------ccCCCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeC
Q 038101 227 VDTSSEI-------------GGNGDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDE 278 (660)
Q Consensus 227 Vdq~~eI-------------a~~~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDE 278 (660)
.++..-+ +...++|. .++.. .+++..||.|+||++.+..+++|+|++|||||
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 5554322 11122331 12322 25778999999999999999999999999999
Q ss_pred CCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 279 IGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 279 PgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
|++||||...+.+ +++|.|||+++|.++-++.+||+++++..|+.+
T Consensus 157 PFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 157 PFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred CccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 9999999886654 689999999999999999999999999999854
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=233.20 Aligned_cols=157 Identities=22% Similarity=0.318 Sum_probs=125.2
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|+.. .+++++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 1 IELRGLTKSFGGR-----TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred CeEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 3689999999865 688887 9999999999999999999999999999887441
Q ss_pred --eEEEEcCCCccccC--------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 --RVMIVDTSSEIGGN--------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~--------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.|+|+++...+... .... ..++.. .+.+..||+|||||++||+|++.+|
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 25666654322100 0000 012221 2456779999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+||||++||+.++..+ ++ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~ 218 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAE 218 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEe
Confidence 99999999999999987765 23 489999999999999999999999999998653
No 27
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.94 E-value=1e-26 Score=230.28 Aligned_cols=156 Identities=17% Similarity=0.270 Sum_probs=122.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++++|+.. ...+++++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFL 78 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHH
Confidence 6799999999642 01478887 8999999999999999999999999999887542
Q ss_pred --eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 --RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.++|+++...+... .... ..++.. .+.+..||+|||||++||+|++.+|+
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (216)
T TIGR00960 79 RRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPP 158 (216)
T ss_pred HHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 35566554322110 0000 012222 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
+||+||||++||+..+..+ ++.|.+||++||+.+++..+||+++.+..|++
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 159 LLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999997775 34589999999999999999999999988863
No 28
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.7e-26 Score=249.51 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=130.7
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------Ce
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KR 223 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------kr 223 (660)
..++++|++++|++. .+++++ +++|++++|+||||||||||||+|+|++.++.| +.
T Consensus 18 ~~l~l~~v~~~~~~~-----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDGQ-----HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRP 92 (377)
T ss_pred ceEEEEeEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 358899999999865 678877 899999999999999999999999999988754 24
Q ss_pred EEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 038101 224 VMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIV 275 (660)
Q Consensus 224 V~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLI 275 (660)
|+|++|...+... ...+ ..++.. .+++..||+|||||++||+|++.+|++|+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7777776533210 0011 012321 25667899999999999999999999999
Q ss_pred EeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 276 IDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 276 LDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g 232 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIG 232 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEc
Confidence 9999999999997665 346999999999999999999999999999987754
No 29
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.4e-26 Score=230.17 Aligned_cols=156 Identities=20% Similarity=0.312 Sum_probs=125.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.|+.|. ++
T Consensus 1 i~~~~~~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (220)
T cd03265 1 IEVENLVKKYGDF-----EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75 (220)
T ss_pred CEEEEEEEEECCE-----EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcE
Confidence 4689999999865 688887 8999999999999999999999999999887541 35
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|+++...+... .+.. ..++.. .+.+..||+|||||++||+|++.+|++||+
T Consensus 76 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llll 155 (220)
T cd03265 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFL 155 (220)
T ss_pred EEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666665422110 0110 012221 245678999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 277 DEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 277 DEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||||++||+.++..+ .+ .|.+||++||+.+++..+||+++.+.+|++..
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 156 DEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999998775 23 48999999999999999999999999999864
No 30
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=234.63 Aligned_cols=164 Identities=17% Similarity=0.257 Sum_probs=130.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++||++.|++... ...+++++ +.+||+++|+|++|||||||+|+|+|+.+++.|.
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 35789999999988711 01388988 9999999999999999999999999999998552
Q ss_pred --eEEEEcCCCcccc--C-------------CCCC-----------CCCCCc---cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 --RVMIVDTSSEIGG--N-------------GDIP-----------HPGIGN---ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 --rV~~Vdq~~eIa~--~-------------~~ip-----------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.|-+|+|...-.. . .+++ ..++.. .|+...|||||+||++||||+..+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 2344444322100 0 0000 112222 2677889999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 272 QVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++||+||||++||+..+..+ .++|.|+|++|||...+..+||++++|.+|.++...
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 99999999999999887765 468999999999999999999999999999997754
No 31
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=9.7e-27 Score=230.39 Aligned_cols=156 Identities=18% Similarity=0.307 Sum_probs=120.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|++.. +...+++++ +++|++++|+|||||||||||++|+|++.++.|
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 36899999997510 001688887 899999999999999999999999999988644
Q ss_pred --CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 --KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+.++|+++...+... .+.. ..++.. .+.+..+|+|||||++||+|++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 135666554322110 0000 012221 2456789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
++||+|||+++||+.++..+ .+ .|.|||++||+.+++. +||+++.+..|+
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 99999999999999997775 23 5899999999999987 899999998886
No 32
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2e-26 Score=229.09 Aligned_cols=160 Identities=18% Similarity=0.282 Sum_probs=124.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEc
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------KRVMIVD 228 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------krV~~Vd 228 (660)
++++|++++|++.. +...+++++ +.+|++++|+||||||||||+++|+|++.++.| +.++|++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 36899999997510 001688887 899999999999999999999999999988755 2467776
Q ss_pred CCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 229 TSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 229 q~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
+...+... ..+. ..++.. .+++..+|+|||||++||+|++++|++||+||||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 65432110 0010 012221 2456789999999999999999999999999999
Q ss_pred CCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEE--cCeEEE
Q 038101 281 TKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEML--IGGVQN 325 (660)
Q Consensus 281 sgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~--~G~I~~ 325 (660)
++||+.++..+ . +.|.+||++||+.+++..+||+++.+. +|++..
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999998765 2 348999999999999889999999999 688754
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.94 E-value=2.5e-26 Score=246.17 Aligned_cols=158 Identities=19% Similarity=0.244 Sum_probs=129.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|+.. .+|+++ +.+|++++|+||||||||||||+|+|++.++.| +++
T Consensus 2 ~L~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGRT-----QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76 (353)
T ss_pred EEEEEEEEEEeCCe-----EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCE
Confidence 37899999999865 688887 899999999999999999999999999988754 246
Q ss_pred EEEcCCCcccc-----------CC------CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 225 MIVDTSSEIGG-----------NG------DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 225 ~~Vdq~~eIa~-----------~~------~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
+|++|...+.. .. ..+ ..++.. .+++..||+|||||++||+|++.+|+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ 156 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ 156 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 77777643211 00 000 012221 24667899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+..+..+ . +.|.|+|++||+.+++..+||++++|..|++.+.
T Consensus 157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998765 2 3489999999999999999999999999998764
No 34
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.2e-26 Score=247.69 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=129.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +.|
T Consensus 3 ~l~i~~l~~~~~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGDV-----VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV 77 (369)
T ss_pred EEEEEEEEEEeCCe-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCE
Confidence 47899999999865 688887 899999999999999999999999999988754 246
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|++|...+... ...+ ..++.. .+++..||+|||||++||+|++.+|++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL 157 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 777775432110 0011 013322 245678999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ . +.|.|+|++||+.+++..+||+++.+.+|++...+
T Consensus 158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999987665 2 34999999999999999999999999999987643
No 35
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=3e-26 Score=219.40 Aligned_cols=149 Identities=19% Similarity=0.294 Sum_probs=118.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCC--CC
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNG--DI 239 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~--~i 239 (660)
++++|++++|++. .+++++ +++|++++|+||||||||||+++|+|++.++.|. |.+ +.. .+.... ..
T Consensus 1 l~~~~l~~~~~~~-----~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~-~g~-~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFGGV-----KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILV-DGK-EVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEECCe-----EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEE-CCE-ECCcCCHHHH
Confidence 3689999999865 688887 9999999999999999999999999999988774 432 221 111100 00
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhc
Q 038101 240 PHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIM 312 (660)
Q Consensus 240 p~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~ 312 (660)
....++ .+..+|+||+||++||++++.+|++||+|||+++||+.+++.+ .+.|.|+|++||+...+..+|
T Consensus 73 ~~~~i~---~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 149 (163)
T cd03216 73 RRAGIA---MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIA 149 (163)
T ss_pred HhcCeE---EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 000111 1223999999999999999999999999999999999987775 345899999999999988999
Q ss_pred CcEEEEEcCeEE
Q 038101 313 NPSLEMLIGGVQ 324 (660)
Q Consensus 313 dril~l~~G~I~ 324 (660)
|+++.+..|++.
T Consensus 150 d~~~~l~~g~i~ 161 (163)
T cd03216 150 DRVTVLRDGRVV 161 (163)
T ss_pred CEEEEEECCEEE
Confidence 999999999874
No 36
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.94 E-value=3.3e-26 Score=239.38 Aligned_cols=157 Identities=19% Similarity=0.254 Sum_probs=129.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------CeE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----------------KRV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----------------krV 224 (660)
++++|++++|+.. .+|+++ +.+|++++|+||||||||||||+|+|++.++.| +.+
T Consensus 3 l~~~~l~~~~~~~-----~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~i 77 (301)
T TIGR03522 3 IRVSSLTKLYGTQ-----NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEECCE-----EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhce
Confidence 6899999999865 788887 999999999999999999999999999998865 246
Q ss_pred EEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|+++...+.. ..+.+ ..++.. .+++..+|+|||||++||+|++++|++||+
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 77766543211 01111 013332 246678999999999999999999999999
Q ss_pred eCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 277 DEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 277 DEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||+++||+.++..++ ..|.|||++||+++++..+||+++.+..|++...
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999987762 3479999999999999999999999999998753
No 37
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.94 E-value=2.3e-26 Score=245.72 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=128.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|+.. .+...+|+++ +.+|++++|+||||||||||+|+|+|++.|+.|
T Consensus 2 I~~~~lsk~y~~~-~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQG-TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCC-CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 6899999999631 0112588888 899999999999999999999999999998744
Q ss_pred -CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
++|++++|...+... .+.+ ..++.. .++...||+|||||++||+|++.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 246777765432110 0111 013322 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+||||++||+.....+ . +.|.|||++||+++.+..+||++++|..|++...
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999998775 2 3499999999999999999999999999998754
No 38
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=1.5e-26 Score=227.56 Aligned_cols=152 Identities=16% Similarity=0.249 Sum_probs=122.8
Q ss_pred EEeEEEEECc-cccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------eEEEE
Q 038101 167 IIGLTCRVGR-AVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------RVMIV 227 (660)
Q Consensus 167 I~~Lt~rygr-~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------rV~~V 227 (660)
++||+++|++ . .+++++ +++|++++|+|||||||||||++|+|++.|+.|. .++|+
T Consensus 2 ~~~l~~~~~~~~-----~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKGT-----EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCcC-----ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 6789999976 4 688887 8999999999999999999999999999887552 46777
Q ss_pred cCCCc--cccC----------CCCC-----------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 038101 228 DTSSE--IGGN----------GDIP-----------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 228 dq~~e--Ia~~----------~~ip-----------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsg 282 (660)
++... +... .... ..++.. .+.+..+|+|||||++||+|++.+|++||+|||+++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 76531 1100 0000 012322 245678999999999999999999999999999999
Q ss_pred ccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 283 LEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 283 LD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
||+.++..+ ++.|.+||++||+.+.+..+||+++.+..|++
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 157 LDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999997775 35689999999999999899999999999875
No 39
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.94 E-value=1.9e-26 Score=227.12 Aligned_cols=156 Identities=20% Similarity=0.279 Sum_probs=124.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV~ 225 (660)
++++|++++|+.. .+++++ +.+|++++|+||||||||||+++|+|++.++.| +.++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGKK-----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75 (208)
T ss_pred CEEEEEEEEECCe-----EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE
Confidence 3689999999765 688887 899999999999999999999999999988754 1356
Q ss_pred EEcCCCccccC-------------CCCC---------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 226 IVDTSSEIGGN-------------GDIP---------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 226 ~Vdq~~eIa~~-------------~~ip---------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
|+++...+... .... ..++.. .+.+..+|+|||||++||++++.+|++||+||||+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 155 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 66665432110 0000 012221 24456799999999999999999999999999999
Q ss_pred CccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 282 KLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 282 gLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+||+.++..+ ++.|.++|++||+.+++..+||+++.+..|++..
T Consensus 156 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 156 GLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999998765 3468999999999999999999999999998753
No 40
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.94 E-value=3.2e-26 Score=225.96 Aligned_cols=156 Identities=22% Similarity=0.309 Sum_probs=124.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------RVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------rV~ 225 (660)
++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.++.|. .++
T Consensus 1 i~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV-----TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75 (213)
T ss_pred CEEEeeEEEECCe-----eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE
Confidence 3689999999875 688887 8999999999999999999999999999877541 366
Q ss_pred EEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
|+.+...+... ..+. ..++.. .+.+..+|+|||||++||++++.+|++||+|
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 155 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD 155 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 66655322100 0000 012221 2355679999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||+++||+.++..+ ++ .|.|||++||+.+++..+||+++.+.+|++..
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 99999999998775 22 48999999999999999999999999998754
No 41
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=3.6e-26 Score=228.32 Aligned_cols=157 Identities=21% Similarity=0.276 Sum_probs=125.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 1 LRAENLSKRYGKR-----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred CeEEEEEEEeCCE-----EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 3689999999865 688887 8999999999999999999999999999887541
Q ss_pred eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
.++|+++...+... .... ..++.. .+....+|+|||||++||+|++++|++|
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 25566554322100 0000 012221 1345679999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|||+++||+.++..+ .+.|.|||++||+.+.+..+||+++.+..|++...
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEE
Confidence 99999999999997765 34689999999999999999999999999998654
No 42
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.94 E-value=4.5e-26 Score=233.93 Aligned_cols=158 Identities=16% Similarity=0.246 Sum_probs=128.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEE
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------RVMI 226 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------rV~~ 226 (660)
+.++++||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.++.|. .++|
T Consensus 11 ~~l~i~~l~~~~~~~-----~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~ 85 (257)
T PRK11247 11 TPLLLNAVSKRYGER-----TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRL 85 (257)
T ss_pred CcEEEEEEEEEECCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEE
Confidence 357899999999865 688887 8999999999999999999999999999887552 3667
Q ss_pred EcCCCccccC--------CCCC------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 227 VDTSSEIGGN--------GDIP------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 227 Vdq~~eIa~~--------~~ip------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
+++...+... .... ..++.. .+.+..||+|||||++||++++.+|++||+||||++||
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 7665432110 0000 113322 24567899999999999999999999999999999999
Q ss_pred HHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 285 AMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 285 ~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+.++..+ .+.|.|||++||+.+++..+||+++.+..|++..
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9998665 2358999999999999989999999999999865
No 43
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=3.4e-26 Score=225.93 Aligned_cols=153 Identities=18% Similarity=0.271 Sum_probs=121.2
Q ss_pred EEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 165 GAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 165 LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
++++|++++|+ +. .+|+++ +++|++++|+||||||||||+++|+|++.++.|+
T Consensus 2 l~~~~l~~~~~~~~-----~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 2 IEFHNVSKAYPGGV-----AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred EEEEeeeEEeCCCc-----eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 67999999994 43 688887 8999999999999999999999999999876542
Q ss_pred ---eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 ---RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.++|+.+...+... ..+. ..++.. .+.+..+|+||+||++||++++.+|
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSP 156 (214)
T ss_pred HHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 35566554322100 0000 012221 1355789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|+
T Consensus 157 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 157 PLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999998775 3468999999999999999999999998774
No 44
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.94 E-value=5.5e-26 Score=247.47 Aligned_cols=158 Identities=22% Similarity=0.366 Sum_probs=129.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|..| +
T Consensus 3 ~L~~~nls~~y~~~-----~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~ 77 (402)
T PRK09536 3 MIDVSDLSVEFGDT-----TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77 (402)
T ss_pred eEEEeeEEEEECCE-----EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhc
Confidence 57899999999876 789888 899999999999999999999999999988744 3
Q ss_pred eEEEEcCCCcccc---------CCCCCC---------------------CCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGG---------NGDIPH---------------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~---------~~~ip~---------------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+++++.+...+.. .+..++ .++.. .+.+..||+|||||++||+|++++
T Consensus 78 ~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 4777777543311 011111 12221 245678999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++|||||||++||+..+..+ .+.|.|||+++|+.+++..+||+++.+.+|++...
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~ 220 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAA 220 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999987665 34689999999999999999999999999998654
No 45
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.5e-26 Score=219.46 Aligned_cols=145 Identities=19% Similarity=0.337 Sum_probs=115.2
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
+++++++++|+.. .+++++ +.+|++++|+||||||||||+++|+|++.+..|. .+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (173)
T cd03230 1 IEVRNLSKRYGKK-----TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRI 75 (173)
T ss_pred CEEEEEEEEECCe-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccE
Confidence 3588999999754 678877 8999999999999999999999999999887663 12
Q ss_pred EEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCE
Q 038101 225 MIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQ 297 (660)
Q Consensus 225 ~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~Gvt 297 (660)
+|+++...+ ++...+.. .+ .+|+||+||++||++++.+|++||+|||+++||+.++..+ .+.|.+
T Consensus 76 ~~~~q~~~~-----~~~~tv~~--~~-~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~t 147 (173)
T cd03230 76 GYLPEEPSL-----YENLTVRE--NL-KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147 (173)
T ss_pred EEEecCCcc-----ccCCcHHH--Hh-hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCE
Confidence 222222111 11111111 11 1999999999999999999999999999999999997765 345899
Q ss_pred EEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 298 LVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 298 VI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
+|++||+..++..+||+++.+..|+
T Consensus 148 iii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 148 ILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred EEEECCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999998999999998886
No 46
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.4e-26 Score=232.28 Aligned_cols=159 Identities=19% Similarity=0.283 Sum_probs=129.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
+.+++++++++|+.. ..+++++ +++|+.++|+|+||||||||++.++|++.|..|
T Consensus 2 ~~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 2 RMIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred ceEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 357899999999764 3688877 899999999999999999999999999999854
Q ss_pred -CeEEEEcCCCccccC--------------CCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 -KRVMIVDTSSEIGGN--------------GDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~--------------~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|++|.|..+-... .+++. .++.. .+.+..||+|||||++||.+++++|
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P 157 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGP 157 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCC
Confidence 236777665431110 01111 12221 2567889999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++||+||||++||+.+++.+ .+ .|.|+|++||+++.+..+||+++.+..|++..
T Consensus 158 ~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 158 EILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 99999999999999998876 23 47999999999999999999999999999854
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.5e-26 Score=242.30 Aligned_cols=161 Identities=17% Similarity=0.263 Sum_probs=127.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|+.. .+...+|+++ +++|++++|+||||||||||+|+|+|++.|+.|
T Consensus 2 i~i~~l~~~y~~~-~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQG-GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCC-CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 6799999999721 0012688887 999999999999999999999999999988744
Q ss_pred -CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
++|+|+++...+... .+++ ..++.. .+.+..||+|||||++||+|++++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 246777665432110 0111 113322 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+||||++||+.++..+ . +.|.|||++||+++++..+||+++.+..|++...
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999997765 2 3489999999999999999999999999998653
No 48
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.94 E-value=4.5e-26 Score=224.54 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=122.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++++|+.. .+++++ +.+|++++|+|||||||||||++|+|++.++.|+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (213)
T cd03262 1 IEIKNLHKSFGDF-----HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75 (213)
T ss_pred CEEEEEEEEECCe-----EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHH
Confidence 3689999999865 688887 8999999999999999999999999999886542
Q ss_pred -eEEEEcCCCccccC--------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 -RVMIVDTSSEIGGN--------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~--------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.++|+++...+... ..+. ..++.. .+.+..+|+||+||++||++++++|+
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred hcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCC
Confidence 24555554322110 0000 012221 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
+||+|||+++||+.++..+ ++.|.+||++||+.+.+..+||+++.+..|++
T Consensus 156 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999987765 34689999999999999999999999988863
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.2e-26 Score=224.28 Aligned_cols=156 Identities=22% Similarity=0.337 Sum_probs=124.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------eEEEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------RVMIV 227 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------rV~~V 227 (660)
++++|+++.|++. .+++++ +.+|++++|+|||||||||||++|+|++.++.|. .++|+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGRV-----TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECCE-----EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 3689999999865 688877 8999999999999999999999999999887542 36677
Q ss_pred cCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 228 DTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 228 dq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
++...+... .+.+ ..++.. .+....+|+|||||++||++++.+|++||+|||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP 155 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP 155 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 665422110 0111 012221 134567999999999999999999999999999
Q ss_pred CCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 280 GTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 280 gsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+++||+.++..+ .+.|.+||++||+.+++..+||+++.+..|++..
T Consensus 156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999999987765 3468999999999999989999999999998753
No 50
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=7.3e-26 Score=218.92 Aligned_cols=152 Identities=20% Similarity=0.318 Sum_probs=115.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-----------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS----------- 230 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~----------- 230 (660)
++++|++++|++. .+++++ +++|++++|+||||||||||+++|+|++.++.|+ |.+-...
T Consensus 1 i~~~~l~~~~~~~-----~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQK-----TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECCe-----EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccchhHHHH
Confidence 3689999999865 688877 8999999999999999999999999999987663 3221100
Q ss_pred -CccccCCCCCCC--CCCccccCCC-CCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hhc-CCEE
Q 038101 231 -SEIGGNGDIPHP--GIGNARRMQV-PNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQR-GIQL 298 (660)
Q Consensus 231 -~eIa~~~~ip~~--~Lg~~rrl~v-LSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~-GvtV 298 (660)
..++....-+.. ...-...+.. +|+||+||++||++++.+|++||+|||+++||+.++..+ ++. |.++
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~ti 154 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 001111000110 0000011112 999999999999999999999999999999999997775 344 8999
Q ss_pred EEEEcChhHHHHhcCcEEEEEcCe
Q 038101 299 VATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 299 I~TtH~~~l~~~i~dril~l~~G~ 322 (660)
|++||+..+...+||+++.+..|+
T Consensus 155 ii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 155 VLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999988999999998773
No 51
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=1e-25 Score=212.16 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=115.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCC
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPH 241 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~ 241 (660)
++++|++++|+.. .+++++ +++|++++|+||||||||||+++|+|++.++.|. | +++....++
T Consensus 1 l~~~~l~~~~~~~-----~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i-~~~~~~~i~------- 66 (144)
T cd03221 1 IELENLSKTYGGK-----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-V-TWGSTVKIG------- 66 (144)
T ss_pred CEEEEEEEEECCc-----eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceE-E-EECCeEEEE-------
Confidence 3688999999765 678877 8999999999999999999999999999988773 3 233322221
Q ss_pred CCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 242 PGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 242 ~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
.+..+|+||+||++||++++.+|+++|+|||+++||+.++..+ .+.+.++|++||+.+++..+||+++.
T Consensus 67 -------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 67 -------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred -------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 1122999999999999999999999999999999999998776 45578999999999999999999999
Q ss_pred EEcCe
Q 038101 318 MLIGG 322 (660)
Q Consensus 318 l~~G~ 322 (660)
+.+|+
T Consensus 140 l~~g~ 144 (144)
T cd03221 140 LEDGK 144 (144)
T ss_pred EeCCC
Confidence 98774
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8.9e-26 Score=227.35 Aligned_cols=158 Identities=20% Similarity=0.235 Sum_probs=126.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.++.| +.+
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGDF-----VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEEeEEEEECCE-----EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 36899999999865 688887 899999999999999999999999999987644 236
Q ss_pred EEEcCCCccccC-------------CCC----C-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 225 MIVDTSSEIGGN-------------GDI----P-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~i----p-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
+|+++...+... ... . ..++.. .+.+..+|+||+||++||+|++.+|+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 156 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK 156 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 677665322110 000 0 012221 13457799999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.++..+ ++ .|.|||++||+.+.+..+||+++.+..|++...
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999998765 23 489999999999998899999999999998654
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.3e-26 Score=229.62 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=126.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY------------------- 220 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~------------------- 220 (660)
..+++++|++.||.. .+|+++ |.++.+++||||+|||||||||++.++.....
T Consensus 6 ~~~~~~~l~~yYg~~-----~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYGDK-----HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEECch-----hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 457899999999987 899998 89999999999999999999999999875432
Q ss_pred ------CCeEEEEcCCCccccC------------CCCCC-------------CCCCcc------ccCCCCCHHHHHHHHH
Q 038101 221 ------KKRVMIVDTSSEIGGN------------GDIPH-------------PGIGNA------RRMQVPNSEMQHKVLI 263 (660)
Q Consensus 221 ------GkrV~~Vdq~~eIa~~------------~~ip~-------------~~Lg~~------rrl~vLSgG~qqrv~I 263 (660)
+++||.|+|...-... .++.. ..+++. +....||||||||++|
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred CCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 1356666665321100 00000 011110 1234589999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||++.+|+||++||||++|||.+...+ .+...|||++||++..+..++|.+.++..|++...+
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 9999999999999999999999987665 346799999999999999999999999999987754
No 54
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.94 E-value=7.2e-26 Score=224.44 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=123.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|++. .+++++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (222)
T cd03224 1 LEVENLNAGYGKS-----QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75 (222)
T ss_pred CEEeeEEeecCCe-----eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhc
Confidence 4689999999865 688887 8999999999999999999999999999887541
Q ss_pred eEEEEcCCCccccC-----------CCCCC-------------C-CCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEE
Q 038101 223 RVMIVDTSSEIGGN-----------GDIPH-------------P-GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIV 275 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-----------~~ip~-------------~-~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLI 275 (660)
.++|+++...+... ..... . ++.. .+.+..+|+|||||++||++++.+|++||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 155 (222)
T cd03224 76 GIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155 (222)
T ss_pred CeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 25666554322100 00000 0 1111 13456799999999999999999999999
Q ss_pred EeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 276 IDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 276 LDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+|||+++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++..
T Consensus 156 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 156 LDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred ECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 9999999999997775 3468999999999999999999999999999865
No 55
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=4.3e-26 Score=224.71 Aligned_cols=151 Identities=19% Similarity=0.335 Sum_probs=120.3
Q ss_pred EEeEEEEECc--cccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------e
Q 038101 167 IIGLTCRVGR--AVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------R 223 (660)
Q Consensus 167 I~~Lt~rygr--~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------r 223 (660)
+++++++|++ . .+++++ +.+|++++|+|||||||||||++|+|++.++.|+ .
T Consensus 2 ~~~l~~~~~~~~~-----~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (211)
T cd03225 2 LKNLSFSYPDGAR-----PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRK 76 (211)
T ss_pred ceeEEEecCCCCe-----eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhh
Confidence 6789999976 4 688887 8999999999999999999999999999887552 3
Q ss_pred EEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 224 VMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 224 V~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
++|+++... +... ..+. ..++.. .+++..+|+|||||++||+|++.+|++|
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 156 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDIL 156 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 566665431 1100 0000 012221 2456789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
|+||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|+
T Consensus 157 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 157 LLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999997765 3458999999999999999999999998774
No 56
>PRK10908 cell division protein FtsE; Provisional
Probab=99.94 E-value=9.2e-26 Score=224.60 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=123.3
Q ss_pred EEEEeEEEEE-Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 165 GAIIGLTCRV-GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 165 LeI~~Lt~ry-gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
++++|++++| ++. .+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 2 l~~~~l~~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 76 (222)
T PRK10908 2 IRFEHVSKAYLGGR-----QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPF 76 (222)
T ss_pred EEEEeeEEEecCCC-----eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHH
Confidence 6799999999 543 678887 8999999999999999999999999999887541
Q ss_pred ---eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 ---RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.++|+++...+... ..+. ..++.. .+....||+|||||++||+|++.+|
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (222)
T PRK10908 77 LRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKP 156 (222)
T ss_pred HHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCC
Confidence 25566554332100 0000 012211 2456789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
++||+||||++||+.++..+ .+.|.++|++||+.+++..+||+++.+..|++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 157 AVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999987665 345899999999999999999999999999874
No 57
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.93 E-value=9.1e-26 Score=217.34 Aligned_cols=151 Identities=21% Similarity=0.341 Sum_probs=113.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC--c-----cc
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS--E-----IG 234 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~--e-----Ia 234 (660)
++++|++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.++.|. |.+ +... . +.
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~-~g~~~~~~~~~~~~ 75 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRL-DGADISQWDPNELG 75 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEE-CCEEcccCCHHHHH
Confidence 3689999999752 01477777 8999999999999999999999999999988663 222 1100 0 00
Q ss_pred -cCCCCCCC-CCCccccC--CCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEc
Q 038101 235 -GNGDIPHP-GIGNARRM--QVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAH 303 (660)
Q Consensus 235 -~~~~ip~~-~Lg~~rrl--~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH 303 (660)
..+.+++. .+... .+ ..+|+||+||++||++++++|++||+|||+++||+.++..+ ++.|.++|++||
T Consensus 76 ~~i~~~~q~~~~~~~-tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 76 DHVGYLPQDDELFSG-SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred hheEEECCCCccccC-cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 00011110 11100 11 12999999999999999999999999999999999997765 356899999999
Q ss_pred ChhHHHHhcCcEEEEEcCe
Q 038101 304 GVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 304 ~~~l~~~i~dril~l~~G~ 322 (660)
+.+++. +||+++.+..|+
T Consensus 155 ~~~~~~-~~d~v~~l~~G~ 172 (173)
T cd03246 155 RPETLA-SADRILVLEDGR 172 (173)
T ss_pred CHHHHH-hCCEEEEEECCC
Confidence 999885 799999998886
No 58
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=228.86 Aligned_cols=160 Identities=20% Similarity=0.291 Sum_probs=128.2
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
...++++||+++|+.. .+++++ +.+|++++|+|+||||||||+++|+|++.++.|.
T Consensus 3 ~~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 3 ENKLNVIDLHKRYGEH-----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred CccEEEeeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 3468899999999865 688887 8999999999999999999999999999877541
Q ss_pred ---------------eEEEEcCCCccccC--------------CCCC-------------CCCCCc---cccCCCCCHHH
Q 038101 223 ---------------RVMIVDTSSEIGGN--------------GDIP-------------HPGIGN---ARRMQVPNSEM 257 (660)
Q Consensus 223 ---------------rV~~Vdq~~eIa~~--------------~~ip-------------~~~Lg~---~rrl~vLSgG~ 257 (660)
+++|+++...+... .... ..++.. .+....+|+||
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~ 157 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHH
Confidence 35665554322100 0000 013322 24567899999
Q ss_pred HHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 258 QHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 258 qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||++||+|++.+|++||+|||+++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999997765 34699999999999999999999999999998653
No 59
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=225.16 Aligned_cols=163 Identities=17% Similarity=0.269 Sum_probs=125.4
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------- 221 (660)
.++.+++++|+++|+... ....+|+++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 2 ~~~~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 2 NKILLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80 (233)
T ss_pred CCceEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence 345689999999997420 001578877 899999999999999999999999999987643
Q ss_pred ------CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL 267 (660)
+.|+|+++...+... ..+. ..++.. .+....+|+|||||++||+++
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 236777765332110 0111 013322 235577999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+++|++||+||||++||+.++..+ ++ .|.|||++||+.+++..+ ++++.+..|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 999999999999999999998765 22 589999999999998875 6899999999854
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.8e-25 Score=232.38 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=128.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|+........+|+++ +.+|++++|+||||||||||+++|+|++.|+.|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 789999999975211112588887 899999999999999999999999999988744
Q ss_pred CeEEEEcCCCc--cccC------------CCCC-------------CCCCC----ccccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 KRVMIVDTSSE--IGGN------------GDIP-------------HPGIG----NARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 krV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg----~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.+++|+++... +... .++. ..++. ..+.+..||+|||||++||+|++.+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~ 162 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAME 162 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcC
Confidence 24677777532 1100 0111 12443 1356688999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 163 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999997776 23 499999999999999889999999999998754
No 61
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=1e-25 Score=223.15 Aligned_cols=160 Identities=24% Similarity=0.295 Sum_probs=124.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
++++|++++|++.- ....+++++ +.+|++++|+|+|||||||||++|+|++.++.|. .+
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 57899999997530 111478887 8999999999999999999999999999887552 35
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|+++...+... .... ..++.. .+....+|+|||||++||+|++.+|++||+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666655422110 0000 012221 245567999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 277 DEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 277 DEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|||+++||+.++..+ .+.|.|||++||+.+++..+||+++.+.+|++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999997765 3468999999999999999999999999998753
No 62
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.93 E-value=9.6e-26 Score=225.82 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=124.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|++. .+|+++ +++|++++|+|||||||||||++|+|++.++.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 1 LEVRGLTKRFGGL-----VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred CeeeeeEEEECCE-----EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 3588999999865 688887 8999999999999999999999999999876541
Q ss_pred eEEEEcCCCccccC--------------CCC----------C------------CCCCCc--cccCCCCCHHHHHHHHHH
Q 038101 223 RVMIVDTSSEIGGN--------------GDI----------P------------HPGIGN--ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------------~~i----------p------------~~~Lg~--~rrl~vLSgG~qqrv~IA 264 (660)
.++|+++...+... ... . ..++.. .+.+..||+|||||++||
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHH
Confidence 26666665322100 000 0 012221 245567999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++++.+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999987765 3478999999999999999999999999999864
No 63
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.93 E-value=7.1e-26 Score=223.30 Aligned_cols=154 Identities=17% Similarity=0.263 Sum_probs=120.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++++|++. ..+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 1 l~~~~l~~~~~~~----~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 76 (214)
T cd03292 1 IEFINVTKTYPNG----TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76 (214)
T ss_pred CEEEEEEEEeCCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 3688999999642 1578887 8999999999999999999999999999887542
Q ss_pred --eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 --RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.++|+.+...+... .... ..++.. .+.+..+|+|||||++||++++++|+
T Consensus 77 ~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (214)
T cd03292 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156 (214)
T ss_pred HHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC
Confidence 25555554322110 0000 012221 13456799999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
+||+||||++||+.++..+ .+.|.|||++||+.+.+..+||+++.+..|+
T Consensus 157 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999987765 3468999999999999998999999998886
No 64
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=229.32 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=124.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEEc
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------RVMIVD 228 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------rV~~Vd 228 (660)
++++|++++|++. .+++++ +.+|++++|+|||||||||||++|+|++.|+.|. .++|+.
T Consensus 2 l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~ 76 (255)
T PRK11248 2 LQISHLYADYGGK-----PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVF 76 (255)
T ss_pred EEEEEEEEEeCCe-----eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEe
Confidence 6799999999865 688887 8999999999999999999999999999887552 256666
Q ss_pred CCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 229 TSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 229 q~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
+...+... ..+. ..++.. .+.+..||+|||||++||++++++|++||+||||
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred CCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 65332110 0011 012221 2456779999999999999999999999999999
Q ss_pred CCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEE--cCeEEE
Q 038101 281 TKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEML--IGGVQN 325 (660)
Q Consensus 281 sgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~--~G~I~~ 325 (660)
++||+.++..+ + +.|.|||++||+.+++..+||+++.+. .|++..
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999997765 1 248999999999999999999999998 477754
No 65
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=1e-25 Score=223.41 Aligned_cols=158 Identities=19% Similarity=0.267 Sum_probs=124.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
++++||+++|++. ...+|+++ +++|++++|+||||||||||+++|+|++.++.|. ++
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE
Confidence 4688999999751 01688887 8999999999999999999999999999887552 35
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|+.+...+... ...+ ..++.. .+.+..+|+||+||++||++++.+|++||+
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666654322100 0011 012321 134577999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 277 DEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 277 DEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|||+++||+.+...+ ...+.|||++||+.+.+..+||+++.+..|++..
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 212 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC 212 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999998775 2346899999999999989999999999999865
No 66
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=225.48 Aligned_cols=157 Identities=18% Similarity=0.290 Sum_probs=123.9
Q ss_pred EEEEeEEEEECc-cccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 165 GAIIGLTCRVGR-AVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 165 LeI~~Lt~rygr-~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
++++||+++|++ . .+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 1 l~~~~l~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (241)
T cd03256 1 IEVENLSKTYPNGK-----KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75 (241)
T ss_pred CEEeeEEEecCCcc-----EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHH
Confidence 368899999976 4 688887 8999999999999999999999999999876442
Q ss_pred ---eEEEEcCCCccccC---------C------------CCC-------------CCCCCc--cccCCCCCHHHHHHHHH
Q 038101 223 ---RVMIVDTSSEIGGN---------G------------DIP-------------HPGIGN--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~---------~------------~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~I 263 (660)
.++|+++...+... . ... ..++.. .+....||+|||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 155 (241)
T cd03256 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAI 155 (241)
T ss_pred HHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHH
Confidence 25566554321100 0 000 012211 13557799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++++|++||+|||+++||+.++..+ .+ .|.+||++||+.+.+..+||+++.+..|++...
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 156 ARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999997765 22 489999999999999999999999999998653
No 67
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=226.20 Aligned_cols=158 Identities=17% Similarity=0.274 Sum_probs=127.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.|+.| +
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 3 EIEFKEVSYSSFGK-----EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred eEEEEeEEEEeCCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhh
Confidence 47899999999765 688887 899999999999999999999999999988755 2
Q ss_pred eEEEEcCCCccccC------------CC---------CCCCCCC-c--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeC
Q 038101 223 RVMIVDTSSEIGGN------------GD---------IPHPGIG-N--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDE 278 (660)
Q Consensus 223 rV~~Vdq~~eIa~~------------~~---------ip~~~Lg-~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDE 278 (660)
.++|+++...+... .. +...++. . .+....+|+|||||++||+|++.+|++||+||
T Consensus 78 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 78 KIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred cEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 35666665322110 00 0012342 1 24567899999999999999999999999999
Q ss_pred CCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 279 IGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 279 PgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY 213 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999987765 23 499999999999999999999999999998653
No 68
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.93 E-value=1.4e-25 Score=226.79 Aligned_cols=158 Identities=21% Similarity=0.271 Sum_probs=126.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++. .+++++ +++|++++|+||||||||||+++|+|++.++.|.
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (250)
T PRK11264 3 AIEVKNLVKKFHGQ-----TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77 (250)
T ss_pred cEEEeceEEEECCe-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchh
Confidence 47899999999865 688887 8999999999999999999999999999876442
Q ss_pred --------eEEEEcCCCcccc-C-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHH
Q 038101 223 --------RVMIVDTSSEIGG-N-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 223 --------rV~~Vdq~~eIa~-~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~ 265 (660)
.++|+++...+.. . .... ..++.. .+....+|+||+||++||+
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~ 157 (250)
T PRK11264 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIAR 157 (250)
T ss_pred hHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHH
Confidence 2556555432110 0 0000 012221 1355779999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+++.+|++||+||||++||+.++..+ .+.|.+||++||+.+++..+||+++.+..|++...
T Consensus 158 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 158 ALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999998765 34699999999999999999999999999998653
No 69
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=226.74 Aligned_cols=160 Identities=16% Similarity=0.219 Sum_probs=127.1
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
...++++|++++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 3 ~~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 77 (255)
T PRK11300 3 QPLLSVSGLMMRFGGL-----LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77 (255)
T ss_pred CceEEEeeEEEEECCE-----EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH
Confidence 3468899999999865 688888 8999999999999999999999999999887551
Q ss_pred ---eEEEEcCCCccccC---------C-----------CC---C------------------CCCCCc--cccCCCCCHH
Q 038101 223 ---RVMIVDTSSEIGGN---------G-----------DI---P------------------HPGIGN--ARRMQVPNSE 256 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~---------~-----------~i---p------------------~~~Lg~--~rrl~vLSgG 256 (660)
.++|+++...+... + ++ + ..++.. .+....+|+|
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 78 ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYG 157 (255)
T ss_pred HhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHH
Confidence 25555554322110 0 00 0 012211 2455679999
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 257 MQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 257 ~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||||++||++++.+|++||+|||+++||+.++..+ ++ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999997765 23 389999999999999999999999999998653
No 70
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=6.9e-26 Score=222.85 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=129.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
+++++|++|+|+.. ..+|+++ |++||++-|+||+|||||||||.|.+...|+.|
T Consensus 1 mI~f~~V~k~Y~~g----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 1 MIRFENVSKAYPGG----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred CeeehhhhhhcCCC----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 36789999999865 3699998 999999999999999999999999999999854
Q ss_pred --CeEEEEcCCCccccCC-------------CCCC-------------CCCCcc--ccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 --KRVMIVDTSSEIGGNG-------------DIPH-------------PGIGNA--RRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~~-------------~ip~-------------~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++||+|+|...+-... +.+. .++... .-..+||||+|||++||||++++|
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P 156 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQP 156 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCC
Confidence 4677777765431110 0110 133332 234689999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+|||.||||.+||+....++ -..|+|||++|||.++++.+..|++.+..|++..
T Consensus 157 ~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 157 AVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred CeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 99999999999999987765 4689999999999999999999999999999854
No 71
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=1.6e-25 Score=223.77 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=124.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||++.|++. .+++++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 1 LEVSNLNVYYGQS-----HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred CEEEeEEEEeCCe-----EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 4689999999865 688887 8999999999999999999999999999887551
Q ss_pred eEEEEcCCCccccC-------------CCCCC----------CC-CCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 223 RVMIVDTSSEIGGN-------------GDIPH----------PG-IGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------~~ip~----------~~-Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
.++|+++...+... ..... .+ +.. .+.+..+|+||+||++||++++.+|++||+
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illl 155 (230)
T TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLL 155 (230)
T ss_pred CeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 35566554322100 00000 01 111 245567999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 277 DEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 277 DEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||+++||+.++..+ ++ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~ 213 (230)
T TIGR03410 156 DEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213 (230)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999998776 23 489999999999999999999999999998654
No 72
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.93 E-value=1.4e-25 Score=225.63 Aligned_cols=157 Identities=19% Similarity=0.322 Sum_probs=124.2
Q ss_pred EEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 165 GAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 165 LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
++++||+++|+ +. .+++++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 2 l~~~~l~~~~~~~~-----~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 2 LEVENLSKVYPNGK-----QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred eEEEeeeeecCCCc-----ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 67899999997 44 688887 8999999999999999999999999999886542
Q ss_pred ---eEEEEcCCCccccC---------CCC-------------C------------CCCCCc--cccCCCCCHHHHHHHHH
Q 038101 223 ---RVMIVDTSSEIGGN---------GDI-------------P------------HPGIGN--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~---------~~i-------------p------------~~~Lg~--~rrl~vLSgG~qqrv~I 263 (660)
.++|+++...+... ... + ..++.. .+....||+|||||++|
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAI 156 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 25666654322100 000 0 012211 13456799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.++..+ .+ .|.|||++||+.+.+..+||+++.+..|++...
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999987765 22 489999999999999899999999999998653
No 73
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=1.4e-25 Score=225.43 Aligned_cols=156 Identities=20% Similarity=0.326 Sum_probs=124.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
++++|++++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.|+.|. .+
T Consensus 2 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i 76 (236)
T TIGR03864 2 LEVAGLSFAYGAR-----RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARL 76 (236)
T ss_pred EEEEeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhE
Confidence 6789999999865 688887 8999999999999999999999999999887552 35
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|+++...+... ..+. ..++.. .+.+..+|+|||||++||++++.+|++||+
T Consensus 77 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred EEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666655332100 0000 012221 245577999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 277 DEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 277 DEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||+++||+.++..+ + +.|.|+|++||+.+++.. ||+++.+..|++...
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD 213 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe
Confidence 999999999998775 2 358999999999999875 999999999998653
No 74
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.93 E-value=1.2e-25 Score=234.95 Aligned_cols=143 Identities=23% Similarity=0.354 Sum_probs=115.4
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEcCCCcccc-------
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RVMIVDTSSEIGG------- 235 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV~~Vdq~~eIa~------- 235 (660)
.+|+++ +.+|++++|+||||||||||||+|+|++.|+.|. +++|+++...+..
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 567766 8899999999999999999999999999987552 3666665532211
Q ss_pred ------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH---
Q 038101 236 ------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--- 291 (660)
Q Consensus 236 ------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--- 291 (660)
..+.+ ..++.. .+++..||+|||||++||+|++++|++|||||||++||+.++..+
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 166 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 00111 113322 246678999999999999999999999999999999999997765
Q ss_pred ----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 292 ----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 292 ----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++.|.|||++||+++++..+||+++.+..|++..
T Consensus 167 l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 167 IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 3469999999999999999999999999999865
No 75
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.93 E-value=1.3e-25 Score=222.79 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=121.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++|++++|+.. .+...+++++ +++|++++|+|||||||||||++|+|++.++.|
T Consensus 2 l~~~~v~~~~~~~-~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEG-KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCC-CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 5789999999642 0112578877 899999999999999999999999999987644
Q ss_pred --CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 --KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+.++|+.+...+... ..+. ..++.. .+.+..||+|||||++||++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 236666665332110 0010 012221 2455789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
++||+||||++||+.++..+ . +.|.|||++||+.+++.. +|+++.+..|++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEe
Confidence 99999999999999997765 2 348999999999998865 799999999886
No 76
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=1.5e-25 Score=215.30 Aligned_cols=147 Identities=18% Similarity=0.302 Sum_probs=118.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCccc
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSEIG 234 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~eIa 234 (660)
+++++++++|+.. ..+++++ +.+|++++|+||||||||||+++|+|++.++.| +.++|+++...+.
T Consensus 1 i~~~~~~~~~~~~----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~ 76 (166)
T cd03223 1 IELENLSLATPDG----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP 76 (166)
T ss_pred CEEEEEEEEcCCC----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc
Confidence 3588999999532 1578887 899999999999999999999999999998866 3566776654331
Q ss_pred cCCCCCCCCCCcc-c--cCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhH
Q 038101 235 GNGDIPHPGIGNA-R--RMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTI 307 (660)
Q Consensus 235 ~~~~ip~~~Lg~~-r--rl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l 307 (660)
. ..+.+. . ....+|+|||||++||++++.+|++||+|||+++||+..+..+ .+.+.|+|++||+.++
T Consensus 77 ~------~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~ 150 (166)
T cd03223 77 L------GTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSL 150 (166)
T ss_pred c------ccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhH
Confidence 1 111110 0 4578999999999999999999999999999999999998776 4458999999999987
Q ss_pred HHHhcCcEEEEEcCe
Q 038101 308 ENLIMNPSLEMLIGG 322 (660)
Q Consensus 308 ~~~i~dril~l~~G~ 322 (660)
. .+||+++.+..++
T Consensus 151 ~-~~~d~i~~l~~~~ 164 (166)
T cd03223 151 W-KFHDRVLDLDGEG 164 (166)
T ss_pred H-hhCCEEEEEcCCC
Confidence 6 5899999988765
No 77
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=5.8e-26 Score=220.01 Aligned_cols=152 Identities=18% Similarity=0.373 Sum_probs=120.6
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC--c-----cc-
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS--E-----IG- 234 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~--e-----Ia- 234 (660)
+++|++++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.++.|. |.+ +..+ . +.
T Consensus 1 ~~~~l~~~~~~~-----~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~-~g~~~~~~~~~~~~~ 73 (180)
T cd03214 1 EVENLSVGYGGR-----TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILL-DGKDLASLSPKELAR 73 (180)
T ss_pred CeeEEEEEECCe-----eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEE-CCEECCcCCHHHHHH
Confidence 368999999764 688877 8999999999999999999999999999988774 433 2211 0 00
Q ss_pred cCCCC----CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hhc-CCEEEE
Q 038101 235 GNGDI----PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQR-GIQLVA 300 (660)
Q Consensus 235 ~~~~i----p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~-GvtVI~ 300 (660)
..+.+ ...++.. .+....+|+||+||++||++++.+|++||+|||+++||+.++..+ ++. |.|+|+
T Consensus 74 ~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii 153 (180)
T cd03214 74 KIAYVPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153 (180)
T ss_pred HHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 00111 1123322 245678999999999999999999999999999999999987775 233 899999
Q ss_pred EEcChhHHHHhcCcEEEEEcCeEE
Q 038101 301 TAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 301 TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+||+.+++..+||+++.+..|++.
T Consensus 154 ~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 154 VLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999998999999999999874
No 78
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=230.10 Aligned_cols=157 Identities=16% Similarity=0.190 Sum_probs=125.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 2 l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 76 (271)
T PRK13638 2 LATSDLWFRYQDE-----PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76 (271)
T ss_pred eEEEEEEEEcCCc-----ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHH
Confidence 6799999999865 688887 8999999999999999999999999999887541
Q ss_pred -eEEEEcCCCcc--ccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 -RVMIVDTSSEI--GGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 -rV~~Vdq~~eI--a~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.++|+.+.... ... .+.. ..++.. .+.+..||+|||||++||++++.+|+
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 25666654321 000 0000 012211 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+||||++||+.++..+ .+.|.+||++||+.+++..+||+++.+..|++...
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~ 217 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH 217 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999997765 34689999999999999999999999999998653
No 79
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=231.71 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=128.2
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++++|+....+...+|+++ |.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 679999999974311112488888 9999999999999999999999999999887541
Q ss_pred ---eEEEEcCCC--cccc----------C--CCCC-------------CCCCCc---cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 ---RVMIVDTSS--EIGG----------N--GDIP-------------HPGIGN---ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 ---rV~~Vdq~~--eIa~----------~--~~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.|+|+.+.. .+.. . .+++ ..++.. .+.+..||+|||||++||+++++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 367777653 1110 0 0111 113421 24567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISC 225 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998765 34699999999999999899999999999998764
No 80
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.8e-25 Score=223.70 Aligned_cols=161 Identities=20% Similarity=0.287 Sum_probs=124.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++++|++.. +...+|+++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 67899999997530 011477877 8999999999999999999999999999887552
Q ss_pred --eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 --RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.|+|+++...+... ..+. ..++.. .+....+|+||+||++||++++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 25555554322110 0010 012221 13557799999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.++..+ ++ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999987765 23 489999999999999999999999999998653
No 81
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=235.44 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=127.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC---------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN----DYK--------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p----~~G--------------- 221 (660)
.++++||++.|+.. .+...+|+++ |.+|++++|+|+||||||||+++|+|++.+ +.|
T Consensus 3 ~L~v~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDE-SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCC-CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 47899999999753 1113589988 999999999999999999999999999863 222
Q ss_pred -------CeEEEEcCCCc--ccc--------------CCCCC-------------CCCCCc-----cccCCCCCHHHHHH
Q 038101 222 -------KRVMIVDTSSE--IGG--------------NGDIP-------------HPGIGN-----ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 -------krV~~Vdq~~e--Ia~--------------~~~ip-------------~~~Lg~-----~rrl~vLSgG~qqr 260 (660)
+.|++++|... +.. ..+.. ..++.. .+....||+||+||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 24788877642 100 00010 113431 24567899999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|++.+|++||+||||++||+..+..+ . +.|.|+|++||+.+.+..+||++++|..|++...
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999987765 2 3599999999999999999999999999998764
No 82
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=2e-25 Score=224.67 Aligned_cols=157 Identities=17% Similarity=0.289 Sum_probs=125.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 2 l~~~~l~~~~~~~-----~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (240)
T PRK09493 2 IEFKNVSKHFGPT-----QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIR 76 (240)
T ss_pred EEEEeEEEEECCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHh
Confidence 6799999999865 688887 8999999999999999999999999999876441
Q ss_pred -eEEEEcCCCccccC---------C-----CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 -RVMIVDTSSEIGGN---------G-----DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~---------~-----~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.++|+.+...+... . ... ..++.. .+.+..+|+|||||++||++++.+|+
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 77 QEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred hceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 35666554322110 0 000 012221 24557799999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999997765 34689999999999999999999999999998653
No 83
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=1.7e-25 Score=222.79 Aligned_cols=157 Identities=17% Similarity=0.277 Sum_probs=125.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------CeEEEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------KRVMIV 227 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------krV~~V 227 (660)
++++|++++|++. .+++++ +.+|++++|+|||||||||||++|+|++.++.| +.++|+
T Consensus 1 l~l~~v~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGKQ-----TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSL 75 (223)
T ss_pred CEEEeEEEEECCE-----EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEE
Confidence 3689999999865 688887 899999999999999999999999999988765 235566
Q ss_pred cCCCccccC-------------CCCC---------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCc
Q 038101 228 DTSSEIGGN-------------GDIP---------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKL 283 (660)
Q Consensus 228 dq~~eIa~~-------------~~ip---------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgL 283 (660)
++...+... .... ..++.. .+.+..+|+||+||++||++++.+|++||+|||+++|
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 554322110 0000 012321 1345679999999999999999999999999999999
Q ss_pred cHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 284 EAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 284 D~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+.++..+ .+.|.+||++||+.+++..+||+++.+..|++...
T Consensus 156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 156 DPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 99998775 34689999999999999999999999999998654
No 84
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.6e-25 Score=225.54 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=126.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++|++++|++. .+++++ +.+|++++|+|||||||||||++|+|++.++.|
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (241)
T PRK10895 3 TLTAKNLAKAYKGR-----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77 (241)
T ss_pred eEEEeCcEEEeCCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 57899999999865 688887 899999999999999999999999999988754
Q ss_pred CeEEEEcCCCccccC---------C-----CCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 KRVMIVDTSSEIGGN---------G-----DIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---------~-----~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
+.++|+.+...+... . .... .++.. .+....+|+||+||++||++++.+|+
T Consensus 78 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (241)
T PRK10895 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPK 157 (241)
T ss_pred hCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCC
Confidence 236666665432110 0 0000 02211 13456799999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.++..+ ++.|.+||++||+.+.+..+||+++.+..|++...
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 218 (241)
T PRK10895 158 FILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH 218 (241)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEee
Confidence 9999999999999988654 35699999999999999999999999999998653
No 85
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=2.3e-25 Score=221.38 Aligned_cols=160 Identities=20% Similarity=0.298 Sum_probs=124.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|++.. ....+++++ +++|++++|+|||||||||||++|+|++.++.|
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 67899999997520 011478887 899999999999999999999999999987644
Q ss_pred -CeEEEEcCCCc--ccc-C------------CCC---------------CCCCCCc---cccCCCCCHHHHHHHHHHHHH
Q 038101 222 -KRVMIVDTSSE--IGG-N------------GDI---------------PHPGIGN---ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 -krV~~Vdq~~e--Ia~-~------------~~i---------------p~~~Lg~---~rrl~vLSgG~qqrv~IA~aL 267 (660)
+.++|+++... +.. . ... ...++.. .+.+..+|+|||||++||+++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 14677766541 110 0 000 0112321 245577999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+.+|++||+||||++||+.++..+ ++. |.|||++||+.+.+..+||+++.+..|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999999997765 233 8999999999999988999999999998753
No 86
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.2e-25 Score=233.14 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=128.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|+..-.....+|+++ |++|++++|+||||||||||+++|+|++.|+.|.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 3789999999975311112478887 8999999999999999999999999999887552
Q ss_pred ------------------------eEEEEcCCCc--ccc--------C----CCCC-------------CCCCC-c--cc
Q 038101 223 ------------------------RVMIVDTSSE--IGG--------N----GDIP-------------HPGIG-N--AR 248 (660)
Q Consensus 223 ------------------------rV~~Vdq~~e--Ia~--------~----~~ip-------------~~~Lg-~--~r 248 (660)
.|+|++|..+ +.. . .+++ ..++. . .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 2566666421 110 0 0111 12442 1 25
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 249 RMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
.+..||+|||||++||++++++|++||+||||++||+.++..+ ++.|.|||++||+.+.+..+||+++.+..|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G 241 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECC
Confidence 6678999999999999999999999999999999999987765 356999999999999999999999999999
Q ss_pred eEEEE
Q 038101 322 GVQNV 326 (660)
Q Consensus 322 ~I~~V 326 (660)
++...
T Consensus 242 ~i~~~ 246 (305)
T PRK13651 242 KIIKD 246 (305)
T ss_pred EEEEE
Confidence 98653
No 87
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=2.2e-25 Score=229.08 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=126.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++. .+++++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 7 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 7 LVDMRGVSFTRGNR-----CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred eEEEeCeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence 57899999999865 688887 8999999999999999999999999999876441
Q ss_pred ---eEEEEcCCCccccC--------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 ---RVMIVDTSSEIGGN--------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~--------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++...+... ..+. ..++.. .+.+..||+|||||++||++++.+
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 35666554322100 0000 012221 234578999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||+.++..+ .+ .|.+||++||+.+.+..+||+++.+..|++...
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEe
Confidence 999999999999999998765 23 489999999999999999999999999998653
No 88
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.93 E-value=6.3e-26 Score=224.13 Aligned_cols=150 Identities=22% Similarity=0.350 Sum_probs=120.5
Q ss_pred EEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcCC
Q 038101 167 IIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------KRVMIVDTS 230 (660)
Q Consensus 167 I~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------krV~~Vdq~ 230 (660)
++||+++|++. .+++++ +.+|++++|+||||||||||+++|+|++.|+.| +.++|+++.
T Consensus 2 ~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 76 (213)
T cd03235 2 VEDLTVSYGGH-----PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQR 76 (213)
T ss_pred cccceeEECCE-----EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccc
Confidence 67899999764 678887 899999999999999999999999999988755 237777765
Q ss_pred Ccccc---C--------CCCC--------C-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 231 SEIGG---N--------GDIP--------H-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 231 ~eIa~---~--------~~ip--------~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
..+.. . .... . .++.. .+.+..||+|||||++||+|++.+|++||+
T Consensus 77 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 156 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLL 156 (213)
T ss_pred cccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 43210 0 0000 0 12211 145678999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 277 DEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 277 DEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 157 DEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 999999999997765 346899999999999999999999999765
No 89
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.93 E-value=2.2e-25 Score=218.81 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=120.3
Q ss_pred eEEEEeEEEEECccc-cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCC---------------
Q 038101 164 KGAIIGLTCRVGRAV-SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL--ANDYKK--------------- 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v-~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~Gk--------------- 222 (660)
.+++++|+++|+..- .....+++++ +++|++++|+||||||||||+++|+|++ .+..|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 478999999997410 0012688887 8999999999999999999999999999 877662
Q ss_pred eEEEEcCCCccccCCCCCCCCCCcc----ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------
Q 038101 223 RVMIVDTSSEIGGNGDIPHPGIGNA----RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------- 291 (660)
Q Consensus 223 rV~~Vdq~~eIa~~~~ip~~~Lg~~----rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------- 291 (660)
.++|+++...+ ++...+... .++..+|+||+||++||++++++|++||+|||+++||+.++..+
T Consensus 83 ~i~~~~q~~~~-----~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 157 (194)
T cd03213 83 IIGYVPQDDIL-----HPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred eEEEccCcccC-----CCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 12333322111 111111111 12237999999999999999999999999999999999997775
Q ss_pred HhcCCEEEEEEcChh-HHHHhcCcEEEEEcCeEEE
Q 038101 292 AQRGIQLVATAHGVT-IENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 292 ~~~GvtVI~TtH~~~-l~~~i~dril~l~~G~I~~ 325 (660)
.+.|.|+|++||+.. .+..+||+++.+..|++..
T Consensus 158 ~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 158 ADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 346999999999996 6778899999999998753
No 90
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.6e-25 Score=220.99 Aligned_cols=155 Identities=20% Similarity=0.266 Sum_probs=122.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
+++++++++|++. .+++++ +.+| +++|+|||||||||||++|+|++.++.|. .+
T Consensus 1 i~~~~~~~~~~~~-----~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 74 (211)
T cd03264 1 LQLENLTKRYGKK-----RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74 (211)
T ss_pred CEEEEEEEEECCE-----EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhhe
Confidence 3689999999765 688887 8899 99999999999999999999999887552 35
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|+.+...+... ...+ ..++.. .+.+..+|+|||||++||+|++.+|++||+
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 154 (211)
T cd03264 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIV 154 (211)
T ss_pred EEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666654322110 0011 012221 135577999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 277 DEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 277 DEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++..
T Consensus 155 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 155 DEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999998775 1236999999999999988999999999998753
No 91
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.2e-25 Score=224.85 Aligned_cols=157 Identities=21% Similarity=0.273 Sum_probs=124.9
Q ss_pred EEEEeEEEEECc-cccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 165 GAIIGLTCRVGR-AVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 165 LeI~~Lt~rygr-~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
+++++++++|++ . .+|+++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 1 l~~~~l~~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGGGK-----KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75 (242)
T ss_pred CEEEEEEEEeCCcc-----eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhc
Confidence 368899999986 4 678887 8999999999999999999999999999887542
Q ss_pred eEEEEcCCCccccC-------------CCCC-------------CCCCCc----cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN----ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~----~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.++|+++...+... .... ..++.. .+....+|+||+||++||++++.+|+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 155 (242)
T cd03295 76 KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPP 155 (242)
T ss_pred ceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 35666654322100 0000 113332 24457799999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.++..+ ++ .|.+||++||+.+.+..+||+++.+..|++...
T Consensus 156 llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 217 (242)
T cd03295 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQV 217 (242)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999987765 23 489999999999999999999999999998653
No 92
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=231.21 Aligned_cols=159 Identities=19% Similarity=0.278 Sum_probs=127.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ..+++++ +++|++++|+||||||||||+++|+|++.|+.| +
T Consensus 4 ~l~~~~l~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (274)
T PRK13647 4 IIEVEDLHFRYKDG----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRS 79 (274)
T ss_pred eEEEEEEEEEeCCC----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHh
Confidence 57899999999632 1588887 899999999999999999999999999988754 2
Q ss_pred eEEEEcCCCc--cccC--------C----CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 RVMIVDTSSE--IGGN--------G----DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 rV~~Vdq~~e--Ia~~--------~----~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.|+|+++... +... + ++. ..++.. .+.+..||+|||||++||+|++.+|++
T Consensus 80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 159 (274)
T PRK13647 80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV 159 (274)
T ss_pred hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 4677777531 1100 0 010 012221 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (274)
T PRK13647 160 IVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE 219 (274)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999998775 34599999999999999889999999999998654
No 93
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.7e-25 Score=233.97 Aligned_cols=164 Identities=18% Similarity=0.258 Sum_probs=129.1
Q ss_pred ceEEEEeEEEEECcccc-----ccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVS-----GSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~-----G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------- 221 (660)
..++++||++.|+.... +...+|+++ |.+|++++|+|+||||||||+++|+|++.++.|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 45889999999963210 123688888 899999999999999999999999999987643
Q ss_pred --------CeEEEEcCCCc--ccc--------------CCCCC-------------CCCCCc---cccCCCCCHHHHHHH
Q 038101 222 --------KRVMIVDTSSE--IGG--------------NGDIP-------------HPGIGN---ARRMQVPNSEMQHKV 261 (660)
Q Consensus 222 --------krV~~Vdq~~e--Ia~--------------~~~ip-------------~~~Lg~---~rrl~vLSgG~qqrv 261 (660)
++|+|++|... +.. ...+. ..++.. .+....||+||+||+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 24777777541 100 00010 113321 245678999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|++.+|++||+||||++||+..+..+ . +.|.|+|++||+..++..+||++++|..|++...
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~ 236 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK 236 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999987765 2 3599999999999999999999999999998764
No 94
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=2.4e-25 Score=221.99 Aligned_cols=156 Identities=21% Similarity=0.317 Sum_probs=124.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc-----ccCCC---------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL-----ANDYK--------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL-----~p~~G--------------- 221 (660)
++++||+++|+.. .+|+++ +.+|++++|+||||||||||+++|+|++ .+..|
T Consensus 1 i~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 75 (227)
T cd03260 1 IELRDLNVYYGDK-----HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75 (227)
T ss_pred CEEEEEEEEcCCc-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH
Confidence 4689999999865 688887 8999999999999999999999999999 76543
Q ss_pred -----CeEEEEcCCCccccC------------CCC-C-------------CCCCCc--ccc--CCCCCHHHHHHHHHHHH
Q 038101 222 -----KRVMIVDTSSEIGGN------------GDI-P-------------HPGIGN--ARR--MQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 222 -----krV~~Vdq~~eIa~~------------~~i-p-------------~~~Lg~--~rr--l~vLSgG~qqrv~IA~a 266 (660)
+.++|+++...+... ... . ..++.. .++ ...+|+|||||++||++
T Consensus 76 ~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHH
Confidence 136677665432110 000 0 013322 133 37899999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++.+|++||+||||++||+.++..+ .+. .+||++||+.+++..+||+++.+..|++...
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999998775 234 8999999999999999999999999998653
No 95
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=226.99 Aligned_cols=158 Identities=21% Similarity=0.370 Sum_probs=126.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.++.| +
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (258)
T PRK13548 2 MLEARNLSVRLGGR-----TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELAR 76 (258)
T ss_pred eEEEEeEEEEeCCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhh
Confidence 36899999999865 688887 899999999999999999999999999988755 1
Q ss_pred eEEEEcCCCccccC---------CCCC-----------------CCCCCc--cccCCCCCHHHHHHHHHHHHHc------
Q 038101 223 RVMIVDTSSEIGGN---------GDIP-----------------HPGIGN--ARRMQVPNSEMQHKVLIEAVEN------ 268 (660)
Q Consensus 223 rV~~Vdq~~eIa~~---------~~ip-----------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~------ 268 (660)
.++|+.+...+... .... ..++.. .+.+..||+|||||++||++++
T Consensus 77 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~ 156 (258)
T PRK13548 77 RRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPD 156 (258)
T ss_pred heEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 35666665332100 0000 012221 2456789999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
.+|++||+||||++||+.++..+ . +.|.|||++||+.+++..+||+++.+..|++...
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 157 GPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEee
Confidence 59999999999999999987664 3 5689999999999999999999999999998653
No 96
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=223.08 Aligned_cols=159 Identities=16% Similarity=0.230 Sum_probs=125.9
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++||+++|+.. .+++++ +++|++++|+||||||||||+++|+|++.++.|.
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 78 (237)
T PRK11614 4 VMLSFDKVSAHYGKI-----QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78 (237)
T ss_pred cEEEEEeEEEeeCCc-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHH
Confidence 357899999999765 688887 8999999999999999999999999999887541
Q ss_pred --eEEEEcCCCccccC---------CC-CCC--------------C-CCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 --RVMIVDTSSEIGGN---------GD-IPH--------------P-GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~---------~~-ip~--------------~-~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.++|+++...+... .. ... . ++.. .+....+|+|||||++||++++.+|++
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i 158 (237)
T PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL 158 (237)
T ss_pred HhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 25566554322110 00 000 0 1111 134567999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+..|++...
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 159 LLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 999999999999987665 35699999999999999999999999999998653
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=230.53 Aligned_cols=163 Identities=15% Similarity=0.212 Sum_probs=128.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++.......+|+++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4679999999974210011578887 9999999999999999999999999999987541
Q ss_pred ----eEEEEcCCCc--cccC------------CCC-------------CCCCCC-c--cccCCCCCHHHHHHHHHHHHHc
Q 038101 223 ----RVMIVDTSSE--IGGN------------GDI-------------PHPGIG-N--ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 223 ----rV~~Vdq~~e--Ia~~------------~~i-------------p~~~Lg-~--~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
.|+|+++... +... ... ...++. . .+++..||+|||||++||+|++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 3667766531 1100 000 012443 1 3567889999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
.+|++||+|||+++||+.++..+ .+.|.|||++||+.+.+..+||+++.+..|++...
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999997765 35699999999999999999999999999998653
No 98
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=3e-25 Score=221.49 Aligned_cols=160 Identities=21% Similarity=0.289 Sum_probs=123.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||+++|+... ....+++++ +.+|++++|+||||||||||+++|+|++.|+.|
T Consensus 5 ~~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 3578999999997520 001478877 899999999999999999999999999987644
Q ss_pred ----CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 ----KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 ----krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
..++|+.+...+... ...+ ..++.. .+.+..+|+|||||++||++++.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 136666655322110 0000 012222 24567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+|++||+|||+++||+.++..+ ++ .|.+||++||+.++.+. ||+++.+..|++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEE
Confidence 9999999999999999987775 23 48999999999998865 9999999999874
No 99
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.1e-25 Score=225.72 Aligned_cols=158 Identities=21% Similarity=0.301 Sum_probs=127.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|++. .+|+++ +++|++++|+|+|||||||||++|+|++.++.|.
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 2 TLRTENLTVGYGTK-----RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEEEEeEEEEECCE-----EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh
Confidence 47899999999865 688887 8999999999999999999999999999877551
Q ss_pred eEEEEcCCCccccC---------CC------CC---C------------CCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN---------GD------IP---H------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~---------~~------ip---~------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++...+... +. +. . .++.. .+....+|+||+||++||+|++.+
T Consensus 77 ~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 156 (255)
T PRK11231 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQD 156 (255)
T ss_pred heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcC
Confidence 36777665432100 00 00 0 12211 245677999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+|||+++||+.++..+ .+.|.|||++||+.+.+..+||+++.+.+|++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 219 (255)
T PRK11231 157 TPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQ 219 (255)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEE
Confidence 999999999999999997765 34589999999999999999999999999998653
No 100
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.93 E-value=3.6e-25 Score=213.86 Aligned_cols=150 Identities=13% Similarity=0.221 Sum_probs=117.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
+++++++++|+... ..+++++ +++|++++|+|||||||||||++|+|++.++.|. .+
T Consensus 1 i~~~~~~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (178)
T cd03247 1 LSINNVSFSYPEQE---QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLI 77 (178)
T ss_pred CEEEEEEEEeCCCC---ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhE
Confidence 36889999996520 1478877 9999999999999999999999999999987663 12
Q ss_pred EEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEE
Q 038101 225 MIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQL 298 (660)
Q Consensus 225 ~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtV 298 (660)
+|+++...+ ++ ..+.+. -...+|+||+||++||++++++|++||+|||+++||+.++..+ ..+|.||
T Consensus 78 ~~~~q~~~~-----~~-~tv~~~-i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~ti 150 (178)
T cd03247 78 SVLNQRPYL-----FD-TTLRNN-LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTL 150 (178)
T ss_pred EEEccCCee-----ec-ccHHHh-hcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 333332211 00 011110 1568999999999999999999999999999999999998765 2358999
Q ss_pred EEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 299 VATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 299 I~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++||+.+++. .||+++.+..|++..
T Consensus 151 i~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 151 IWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred EEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 99999999986 699999999998753
No 101
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=1.9e-25 Score=216.84 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=113.9
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC---------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS--------- 230 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~--------- 230 (660)
+.++++|++++| +++++ +++|++++|+||||||||||+++|+|++.++.|. |.+-...
T Consensus 3 ~~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~ 72 (182)
T cd03215 3 PVLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE-ITLDGKPVTRRSPRDA 72 (182)
T ss_pred cEEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCce-EEECCEECCccCHHHH
Confidence 357899999987 46665 8999999999999999999999999999988663 2221100
Q ss_pred --CccccCCC-------CCCCCCCccccCC-CCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh
Q 038101 231 --SEIGGNGD-------IPHPGIGNARRMQ-VPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ 293 (660)
Q Consensus 231 --~eIa~~~~-------ip~~~Lg~~rrl~-vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~ 293 (660)
..++.... ++...+.+.-... .+|+||+||++||+|++++|++||+|||+++||+.++..+ .+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 152 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD 152 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH
Confidence 00111100 1111111111111 2999999999999999999999999999999999997775 34
Q ss_pred cCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 294 RGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 294 ~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
.|.|+|++||+.+.+..+||+++.+.+|+
T Consensus 153 ~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 153 AGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred CCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 58999999999999999999999998886
No 102
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.5e-25 Score=223.18 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=126.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|++. .+++++ +++|++++|+||||||||||+++|+|++.++.|+
T Consensus 2 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T PRK11124 2 SIQLNGINCFYGAH-----QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred EEEEEeeEEEECCe-----eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhh
Confidence 46899999999865 688887 8999999999999999999999999999876541
Q ss_pred ------eEEEEcCCCcccc-C-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHH
Q 038101 223 ------RVMIVDTSSEIGG-N-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 223 ------rV~~Vdq~~eIa~-~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL 267 (660)
.|+|+++...+.. . .+.. ..++.. .+.+..+|+||+||++||+++
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 77 IRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 2555555432210 0 0000 012221 245677999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+.+|++||+|||+++||+.++..+ ++.|.|+|++||+..+...+||+++.+..|++...
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999987765 34699999999999999889999999999998653
No 103
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=3.6e-25 Score=223.94 Aligned_cols=157 Identities=19% Similarity=0.231 Sum_probs=124.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCC--------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YKK-------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~Gk-------------- 222 (660)
++++||+++|++. .+++++ +.+|++++|+|+|||||||||++|+|++.|+ .|.
T Consensus 2 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYGEK-----EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEECCe-----eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 6799999999865 688887 8999999999999999999999999999865 441
Q ss_pred ------eEEEEcCCCcccc------------CCC-CC-------------CCCCC----c--cccCCCCCHHHHHHHHHH
Q 038101 223 ------RVMIVDTSSEIGG------------NGD-IP-------------HPGIG----N--ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 223 ------rV~~Vdq~~eIa~------------~~~-ip-------------~~~Lg----~--~rrl~vLSgG~qqrv~IA 264 (660)
.++|+++...+.. ... .+ ..++. . .+.+..+|+|||||++||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred hHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 3556655432210 000 00 01333 1 245678999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++++++|++||+|||+++||+.++..+ ...+.|||++||+.+.+..+||+++.+..|++...
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 224 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999997765 12358999999999999999999999999998653
No 104
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3.7e-25 Score=230.39 Aligned_cols=162 Identities=21% Similarity=0.236 Sum_probs=128.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|+........+|+++ |++|++++|+||||||||||+++|+|++.++.|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 689999999974211112588888 999999999999999999999999999988744
Q ss_pred --CeEEEEcCCC--cccc------------CCCCC-------------CCCCC-c--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 --KRVMIVDTSS--EIGG------------NGDIP-------------HPGIG-N--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 --krV~~Vdq~~--eIa~------------~~~ip-------------~~~Lg-~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
++|+|++|.. .+.. ..+++ ..++. . .+.+..||+|||||++||++++.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 1367777653 1110 00111 12443 1 24678899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998775 23 499999999999999999999999999998654
No 105
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.93 E-value=2.1e-25 Score=231.43 Aligned_cols=207 Identities=30% Similarity=0.501 Sum_probs=170.5
Q ss_pred eehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCC----------------CCccceeeccc----eeeccc
Q 038101 101 IEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFA----------------VDNRAGISRTL----HRISAI 160 (660)
Q Consensus 101 ~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs----------------~d~R~GI~rtl----hRIs~i 160 (660)
+|||+++|||.++.+...+.+.....+|+++|..++..++.|+ +++|+||.+.. +.|.+|
T Consensus 1 ~eiri~inrP~~v~~~~~~~~~~~~~lt~~~l~~l~~~la~~s~~~~~~~~~~~~~tlpgG~Rv~i~~~p~~~~g~v~tI 80 (270)
T TIGR02858 1 EEIRIRVGRPLELVFDGEEVFVTDYIPTVEDVNYILQLISNYSLYAFEEELKQGYITIEGGHRVGLAGRCVTENGKVKTI 80 (270)
T ss_pred CeEEEECCCCCEEEECCCCEEEecccCCHHHHHHHHHHHHhccccccccccccceEEcCCCcEEEEEccceecCCEEEEE
Confidence 5999999999999998888777766799999999999999986 57888888654 567777
Q ss_pred cCceEEEEeEEEEECcccccccc-cccccccCC--cEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCC
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSAN-LLQDLVQDG--ASLLFIGPPGVGKTTIIREIARVLANDYK------KRVMIVDTSS 231 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~-iL~dlI~~G--e~ilIlGPnGsGKTTLLR~IaglL~p~~G------krV~~Vdq~~ 231 (660)
|+ ++.+++|..+.+.++.. .+..+.+.| .+++|+||||||||||+++|+|+++++.| ++|..+++..
T Consensus 81 R~----~s~~~~r~~~~~~~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ 156 (270)
T TIGR02858 81 KN----VSSLNIRIAREKLGAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERS 156 (270)
T ss_pred Ec----ccccEEEeccccCCcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHH
Confidence 75 67888888877777654 344556556 78999999999999999999999998754 5677777677
Q ss_pred ccccC-CCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 232 EIGGN-GDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 232 eIa~~-~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
+++.. ..+|+..++. +++++.++.|...+++++++++|+|||+|||++..+..+.....+.|+++|+|+|+.+..+.
T Consensus 157 ei~~~~~~~~q~~~~~--r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 157 EIAGCVNGVPQHDVGI--RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHhcccccccccc--cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHHH
Confidence 77654 5678877775 78889999999999999999999999999999887777776666789999999999887555
Q ss_pred hcC
Q 038101 311 IMN 313 (660)
Q Consensus 311 i~d 313 (660)
..+
T Consensus 235 ~~r 237 (270)
T TIGR02858 235 YKR 237 (270)
T ss_pred HhC
Confidence 433
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=4.1e-25 Score=222.34 Aligned_cols=158 Identities=19% Similarity=0.190 Sum_probs=125.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|++. .+++++ +.+|++++|+|||||||||||++|+|++.|+.|.
T Consensus 2 ~i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 2 ILYLEGLSVSFDGF-----KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred eEEEEeeEEEcCCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 46899999999765 688887 8999999999999999999999999999887541
Q ss_pred -eEEEEcCCCccccC---------C-C-----------CC-------------CCCCCc--cccCCCCCHHHHHHHHHHH
Q 038101 223 -RVMIVDTSSEIGGN---------G-D-----------IP-------------HPGIGN--ARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~---------~-~-----------ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~ 265 (660)
.++|+++...+... . . .. ..++.. .+.+..+|+||+||++||+
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 25666554322100 0 0 00 012221 2455679999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++|++||+||||++||+.++..+. ..+.+||++||+.+++..+||+++.+..|++...
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 999999999999999999999987762 3478999999999999999999999999998654
No 107
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.5e-25 Score=234.84 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=121.0
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
+++ ||+++|++. . + ++ +++|++++|+||||||||||||+|+|++.|+.|.
T Consensus 2 l~~-~l~k~~~~~-----~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~ 73 (352)
T PRK11144 2 LEL-NFKQQLGDL-----C-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPP 73 (352)
T ss_pred eEE-EEEEEeCCE-----E-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccch
Confidence 566 999999864 2 2 44 8999999999999999999999999999887542
Q ss_pred ---eEEEEcCCCccccC--------CCCC------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 223 ---RVMIVDTSSEIGGN--------GDIP------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~--------~~ip------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
.++|+++...+... .... ..++.. .+++..||+|||||++||+|++.+|++||+|
T Consensus 74 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 74 EKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred hhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 24555544322100 0000 013322 2566789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 278 EIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||+++||+..+..+ . +.|.|+|++||+.+++..+||+++.+.+|++...+
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g 211 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEec
Confidence 99999999987765 2 34899999999999999999999999999987643
No 108
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.93 E-value=5.3e-25 Score=234.04 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=129.6
Q ss_pred CceEEEEeEEEEECccc--------cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------
Q 038101 162 NRKGAIIGLTCRVGRAV--------SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v--------~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------- 221 (660)
+..++++||++.|+..- .+...+++++ |.+|++++|+|+||||||||+++|+|++.++.|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 45689999999996410 1123688888 899999999999999999999999999988643
Q ss_pred ------------CeEEEEcCCCc--cc-cC------------C--CCC-------------CCCCCc---cccCCCCCHH
Q 038101 222 ------------KRVMIVDTSSE--IG-GN------------G--DIP-------------HPGIGN---ARRMQVPNSE 256 (660)
Q Consensus 222 ------------krV~~Vdq~~e--Ia-~~------------~--~ip-------------~~~Lg~---~rrl~vLSgG 256 (660)
++|+|+.|... +. .. . .+. ..++.. .+....||+|
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 24777777631 11 00 0 111 013311 2456789999
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 257 MQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 257 ~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+||++||+|++.+|++||+||||++||+..+..+ .+ .|.|+|++||++.++..+||++++|..|++...
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~ 243 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999987765 23 499999999999999999999999999998653
No 109
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.8e-25 Score=234.64 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=127.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC---------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN----DYK--------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p----~~G--------------- 221 (660)
.++++||+++|+.. .+...+++++ |.+|++++|+|+||||||||+++|+|++.+ +.|
T Consensus 3 ~L~v~~l~~~y~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTS-DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCC-CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 57899999999431 1123688888 999999999999999999999999999863 322
Q ss_pred -------CeEEEEcCCCccc----------------cC--CC--CC--------------CCCCCc-----cccCCCCCH
Q 038101 222 -------KRVMIVDTSSEIG----------------GN--GD--IP--------------HPGIGN-----ARRMQVPNS 255 (660)
Q Consensus 222 -------krV~~Vdq~~eIa----------------~~--~~--ip--------------~~~Lg~-----~rrl~vLSg 255 (660)
+.|+|++|..... .. .. .. ..++.. .+....||+
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 2478888764310 00 00 00 013332 234568999
Q ss_pred HHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 256 EMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 256 G~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||||++||+|++.+|++||+||||++||+.++..+ .+ .|.|||++||++.++..+||++++|..|++...
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999997765 23 599999999999999999999999999998664
No 110
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.2e-25 Score=238.62 Aligned_cols=163 Identities=20% Similarity=0.271 Sum_probs=127.5
Q ss_pred eEEEEeEEEEECcccc-------------------ccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 038101 164 KGAIIGLTCRVGRAVS-------------------GSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~-------------------G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G 221 (660)
.++++||+|.||.... |...+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 4778888888887521 222357776 899999999999999999999999999988754
Q ss_pred ----------------------CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCC
Q 038101 222 ----------------------KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQ 251 (660)
Q Consensus 222 ----------------------krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~ 251 (660)
++++|++|...+... .+++ ..++.. .+.+.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc
Confidence 146777665432110 0111 113322 24567
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 252 VPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
.||+|||||++||+|++++|++||||||+++||+..+..+ . +.|.|||++||+.+++..+||+++.+..|++
T Consensus 164 ~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243 (400)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999998775 2 3589999999999999999999999999998
Q ss_pred EEE
Q 038101 324 QNV 326 (660)
Q Consensus 324 ~~V 326 (660)
...
T Consensus 244 ~~~ 246 (400)
T PRK10070 244 VQV 246 (400)
T ss_pred Eec
Confidence 653
No 111
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.1e-25 Score=222.75 Aligned_cols=159 Identities=19% Similarity=0.282 Sum_probs=125.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G------------- 221 (660)
+.++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++. ++.|
T Consensus 5 ~~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYGDF-----QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEECCe-----eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 568899999999865 688887 89999999999999999999999999863 2322
Q ss_pred -------CeEEEEcCCCccccC------------CCC-C-------------CCCCCc------cccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDI-P-------------HPGIGN------ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~i-p-------------~~~Lg~------~rrl~vLSgG~qqrv~ 262 (660)
+.++|+.+...+... ... . ..++.. .+....+|+|||||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 236677665322100 000 0 012211 2345679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...|.|||++||+.+++..+||+++.+..|++...
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999997776 23579999999999999999999999999998654
No 112
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.9e-25 Score=216.94 Aligned_cols=154 Identities=15% Similarity=0.207 Sum_probs=121.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------RVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------rV~ 225 (660)
++++|++++|++. .. ++ +.+|++++|+||||||||||+++|+|++.++.|. .++
T Consensus 1 i~~~~l~~~~~~~-----~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ-----PM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE-----ec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEE
Confidence 3588999999754 22 44 8999999999999999999999999999887552 366
Q ss_pred EEcCCCccccC---------CCCCC-----------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIGGN---------GDIPH-----------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa~~---------~~ip~-----------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
|+++...+... ..... .++.. .+.+..+|+|||||++||++++.+|++||+|
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD 153 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD 153 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 77665432110 00000 12211 1456789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 278 EIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||+++||+.++..+ + +.|.+||++||+.+++..+||+++.+..|++..
T Consensus 154 EP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 154 EPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 99999999998775 2 348999999999999999999999999998753
No 113
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.5e-25 Score=227.13 Aligned_cols=159 Identities=21% Similarity=0.312 Sum_probs=127.9
Q ss_pred ceEEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 163 RKGAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
..++++|++++|+ +. .+++++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 4 ~~l~~~~l~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 4 YILKVEELNYNYSDGT-----HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred ceEEEEeEEEEeCCCC-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 4688999999996 33 688887 899999999999999999999999999988754
Q ss_pred ---CeEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 ---KRVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 ---krV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
..++|+++... +... .+++ ..++.. .+.+..+|+||+||++||+|++.
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 13677776542 1100 0111 012221 24667899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+|||+++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++.+.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~ 223 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999998765 23 389999999999999889999999999998654
No 114
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=9.1e-25 Score=232.08 Aligned_cols=163 Identities=16% Similarity=0.241 Sum_probs=128.4
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC---CC---------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND---YK--------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~---~G--------------- 221 (660)
..++++||++.|+.. .|...+++++ |.+|++++|+|+||||||||+++|+|++.+. .|
T Consensus 11 ~~L~i~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTP-DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecC-CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 458899999999531 1223688887 8999999999999999999999999999873 22
Q ss_pred -------CeEEEEcCCCc--ccc--------------CCCCC-------------CCCCCc-----cccCCCCCHHHHHH
Q 038101 222 -------KRVMIVDTSSE--IGG--------------NGDIP-------------HPGIGN-----ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 -------krV~~Vdq~~e--Ia~--------------~~~ip-------------~~~Lg~-----~rrl~vLSgG~qqr 260 (660)
+.|+|++|... +.. ..... ..++.. .+....||+||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 25788877641 100 00111 012321 13567899999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|++.+|++||+||||++||+..+..+ . +.|.|+|++||+...+..+||++++|..|++...
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999998765 2 3499999999999999999999999999998764
No 115
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.8e-25 Score=225.35 Aligned_cols=160 Identities=18% Similarity=0.266 Sum_probs=127.3
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
++.++++||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 9 ~~~l~i~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 9 DTTFALRNVSFRVPGR-----TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred CceEEEeeEEEEECCE-----EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 3468899999999865 688887 8999999999999999999999999999876541
Q ss_pred --eEEEEcCCCcc-ccC--------CCC--------CC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHc
Q 038101 223 --RVMIVDTSSEI-GGN--------GDI--------PH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 223 --rV~~Vdq~~eI-a~~--------~~i--------p~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
.++|+++...+ ... ... .. .++.. .+.+..+|+|||||++||++++
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 36677665322 110 000 00 01211 1355679999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
.+|+|||+|||+++||+.++..+ ++ .|.+||++||+.+++..+||+++.+..|++...
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999999999999999997665 23 489999999999999899999999999998654
No 116
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.9e-25 Score=228.47 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=122.9
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------------
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------------- 221 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------------- 221 (660)
.+.++++.|+.. .+|+++ +++|++++|+|||||||||||++|+|++.++.|
T Consensus 26 ~~~~~~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 100 (269)
T cd03294 26 SKEEILKKTGQT-----VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100 (269)
T ss_pred hhhhhhhhcCCc-----eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhh
Confidence 356777888765 678887 899999999999999999999999999988644
Q ss_pred -CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
+.++|+++...+... ..+. ..++.. .+.+..||+|||||++||+|++++|+
T Consensus 101 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 101 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred cCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 136666654322100 0000 012221 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+||||++||+.++..+ . +.|.|||++||+.+++..+||+++.+..|++...
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 242 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQV 242 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999997765 2 2489999999999999899999999999998653
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.93 E-value=7.1e-25 Score=222.42 Aligned_cols=157 Identities=20% Similarity=0.279 Sum_probs=123.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|+.. .+++++ +++|++++|+||||||||||+|+|+|++.++.|.
T Consensus 1 i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 75 (252)
T TIGR03005 1 VRFSDVTKRFGIL-----TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75 (252)
T ss_pred CEEEEEEEEeCCe-----eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccc
Confidence 3689999999865 688887 8999999999999999999999999999886542
Q ss_pred ------------eEEEEcCCCccccC--------------CCCC-------------CCCCCc--cccCCCCCHHHHHHH
Q 038101 223 ------------RVMIVDTSSEIGGN--------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKV 261 (660)
Q Consensus 223 ------------rV~~Vdq~~eIa~~--------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv 261 (660)
.++++.+...+... ..+. ..++.. .+....+|+||+||+
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRV 155 (252)
T ss_pred ccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHH
Confidence 24455443221100 0000 012221 134567999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||++++.+|++||+|||+++||+.++..+ .+ .|.|+|++||+.+.+..+||+++.+..|++...
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQ 228 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999987765 23 489999999999999889999999999998653
No 118
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.2e-25 Score=211.74 Aligned_cols=153 Identities=15% Similarity=0.291 Sum_probs=112.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccc------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS-EIG------ 234 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~-eIa------ 234 (660)
++++|++++|++.. ..+++++ +.+|++++|+||||||||||+++|+|++.++.|. |.+-.... ...
T Consensus 1 l~~~~l~~~~~~~~---~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGRP---KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEEEcCCCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHh
Confidence 36889999997531 1477777 8999999999999999999999999999988663 32211100 000
Q ss_pred cCCCCCC-CCCCccccC-CCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChh
Q 038101 235 GNGDIPH-PGIGNARRM-QVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVT 306 (660)
Q Consensus 235 ~~~~ip~-~~Lg~~rrl-~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~ 306 (660)
..+.+++ ..+....-. ..+|+||+||++||++++.+|++||+|||+++||+.++..+ ...+.++|++||+.+
T Consensus 77 ~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 77 NIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred hEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 0000111 011110000 11999999999999999999999999999999999998765 234799999999999
Q ss_pred HHHHhcCcEEEEEcCe
Q 038101 307 IENLIMNPSLEMLIGG 322 (660)
Q Consensus 307 l~~~i~dril~l~~G~ 322 (660)
++.. ||+++.+..|+
T Consensus 157 ~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 157 TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHh-CCEEEEEcCCC
Confidence 9987 99999998764
No 119
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.93 E-value=3.5e-25 Score=238.38 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=115.4
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeEEEEcCCCccccC-
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------------KRVMIVDTSSEIGGN- 236 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------------krV~~Vdq~~eIa~~- 236 (660)
.+++++ |++|++++|+||||||||||||+|+|++.|+.| +.++|++|...+...
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 466666 889999999999999999999999999998754 246777665432110
Q ss_pred ------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHH
Q 038101 237 ------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAS 289 (660)
Q Consensus 237 ------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~ 289 (660)
.+++ ..++.. .+++..||+|||||++||+|++.+|++||||||+++||+..+.
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~ 166 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRD 166 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 0010 012221 2456789999999999999999999999999999999999987
Q ss_pred HH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 290 TI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 290 ~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
.+ . +.|.|||++||+.+++..+||+++.|..|++...
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~ 211 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQV 211 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEee
Confidence 76 2 3489999999999999999999999999998664
No 120
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.93 E-value=1.4e-24 Score=220.20 Aligned_cols=158 Identities=21% Similarity=0.257 Sum_probs=124.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|+.. .+++++ +++|++++|+|||||||||||++|+|++.+..|.
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (253)
T TIGR02323 3 LLQVSGLSKSYGGG-----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSE 77 (253)
T ss_pred eEEEeeeEEEeCCc-----eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCH
Confidence 57899999999765 678887 8999999999999999999999999999876541
Q ss_pred ---------eEEEEcCCCcccc----------------CCCC-------------CCCCCCc---cccCCCCCHHHHHHH
Q 038101 223 ---------RVMIVDTSSEIGG----------------NGDI-------------PHPGIGN---ARRMQVPNSEMQHKV 261 (660)
Q Consensus 223 ---------rV~~Vdq~~eIa~----------------~~~i-------------p~~~Lg~---~rrl~vLSgG~qqrv 261 (660)
.++|+++...... .... ...++.. .+....+|+|||||+
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 1455544321000 0000 0012321 135567999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|++.+|++||+|||+++||+.++..+ . +.|.+||++||+.+++..+||+++.+..|++...
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEE
Confidence 999999999999999999999999998765 2 3489999999999999989999999999998653
No 121
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.93 E-value=9.2e-25 Score=224.32 Aligned_cols=163 Identities=17% Similarity=0.263 Sum_probs=126.7
Q ss_pred ceEEEEeEEEEECccc----cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------
Q 038101 163 RKGAIIGLTCRVGRAV----SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v----~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------- 221 (660)
+.++++||+++|+... .+...+|+++ +++|++++|+|||||||||||++|+|++.|+.|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 3578999999996310 0112588887 899999999999999999999999999988754
Q ss_pred ----CeEEEEcCCCc--cc-c------------CC-CCC-------------CCCCC-c--cccCCCCCHHHHHHHHHHH
Q 038101 222 ----KRVMIVDTSSE--IG-G------------NG-DIP-------------HPGIG-N--ARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 222 ----krV~~Vdq~~e--Ia-~------------~~-~ip-------------~~~Lg-~--~rrl~vLSgG~qqrv~IA~ 265 (660)
+.++|+++... +. . .. .+. ..++. . .+.+..||+||+||++||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 13666666532 10 0 00 000 11331 1 2345789999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+++++|+|||||||+++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++..
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999997765 23 48999999999999999999999999999865
No 122
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.92 E-value=6.9e-25 Score=223.26 Aligned_cols=157 Identities=21% Similarity=0.334 Sum_probs=126.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------e
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------R 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------r 223 (660)
++++|++++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.++.|. .
T Consensus 2 l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (256)
T TIGR03873 2 LRLSRVSWSAGGR-----LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76 (256)
T ss_pred ceEEeEEEEECCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhh
Confidence 5789999999875 688888 8999999999999999999999999999887551 3
Q ss_pred EEEEcCCCccccC---------CCC--------C-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 224 VMIVDTSSEIGGN---------GDI--------P-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~~---------~~i--------p-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+.+...+... +.. + ..++.. .+....||+||+||++||++++.+|
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 77 VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred eEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 6677665422100 000 0 011211 1345679999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|||+++||+.++..+ .+.|.|||++||+.+.+..+||+++.+..|++...
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAA 218 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEe
Confidence 99999999999999997765 34589999999999999999999999999998654
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.4e-25 Score=224.59 Aligned_cols=160 Identities=21% Similarity=0.343 Sum_probs=128.1
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
+..++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 5 ~~~l~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 5 VARLRGEQLTLGYGKY-----TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred ccEEEEEEEEEEECCE-----EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 3467899999999865 688888 8999999999999999999999999999887541
Q ss_pred --eEEEEcCCCcccc---------CCCCCC---------------------CCCCc--cccCCCCCHHHHHHHHHHHHHc
Q 038101 223 --RVMIVDTSSEIGG---------NGDIPH---------------------PGIGN--ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 223 --rV~~Vdq~~eIa~---------~~~ip~---------------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
.++|+++...+.. ....+. .++.. .+.+..||+|||||++||+|++
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 159 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLA 159 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHh
Confidence 3666666532210 000000 02211 2456789999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
.+|++||+|||+++||+.++..+ .+ .|.+||++||+.+++..+||+++.+..|++...
T Consensus 160 ~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (265)
T PRK10253 160 QETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ 225 (265)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999987765 23 489999999999999999999999999998654
No 124
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=1.3e-24 Score=221.37 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=125.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC---------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN----DYK--------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p----~~G--------------- 221 (660)
.++++|++++| +. .+|+++ +.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 4 ~l~~~~l~~~~-~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-AQ-----PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-cc-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 47899999999 33 578887 899999999999999999999999999987 534
Q ss_pred -CeEEEEcCCCc--cccC-------------CCCC-----------CCCCCc-----cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 -KRVMIVDTSSE--IGGN-------------GDIP-----------HPGIGN-----ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 -krV~~Vdq~~e--Ia~~-------------~~ip-----------~~~Lg~-----~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.|+|+++... +... .+.. ..++.. .+....+|+|||||++||+|++.
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 24777776642 1100 0000 113322 23457799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+|||+++||+.++..+ .+ .|.|||++||+.+.+..+||+++.+..|++...
T Consensus 158 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 158 EAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999987665 23 489999999999999889999999999998653
No 125
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.92 E-value=1.1e-24 Score=214.66 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=119.0
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCC-----------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL--ANDYKK----------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~Gk----------------- 222 (660)
++++|++++|++. .+++++ +.+|++++|+|+||||||||+++|+|++ .++.|+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (200)
T cd03217 1 LEIKDLHVSVGGK-----EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERA 75 (200)
T ss_pred CeEEEEEEEeCCE-----EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHh
Confidence 3689999999865 688887 8999999999999999999999999994 566552
Q ss_pred --eEEEEcCCCccccCCCCCCCCCCcc-ccC-CCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------
Q 038101 223 --RVMIVDTSSEIGGNGDIPHPGIGNA-RRM-QVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------- 291 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~~~ip~~~Lg~~-rrl-~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------- 291 (660)
.++|+++...+ ++...+... +.. ..+|+||+||++||++++.+|++||+||||++||+.++..+
T Consensus 76 ~~~i~~v~q~~~~-----~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 76 RLGIFLAFQYPPE-----IPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL 150 (200)
T ss_pred hCcEEEeecChhh-----ccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 12222222111 111111110 233 58999999999999999999999999999999999987765
Q ss_pred HhcCCEEEEEEcChhHHHH-hcCcEEEEEcCeEEEE
Q 038101 292 AQRGIQLVATAHGVTIENL-IMNPSLEMLIGGVQNV 326 (660)
Q Consensus 292 ~~~GvtVI~TtH~~~l~~~-i~dril~l~~G~I~~V 326 (660)
++.|.|||++||+.+.+.. +||+++.+..|++...
T Consensus 151 ~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 151 REEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred HHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 3458999999999999887 7999999999998653
No 126
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.8e-25 Score=226.59 Aligned_cols=162 Identities=16% Similarity=0.231 Sum_probs=127.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|+........+|+++ |.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 689999999964211112588888 9999999999999999999999999999887541
Q ss_pred ---eEEEEcCCCc--ccc------------CCCCC-------------CCCCC-c--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 ---RVMIVDTSSE--IGG------------NGDIP-------------HPGIG-N--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 ---rV~~Vdq~~e--Ia~------------~~~ip-------------~~~Lg-~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+|+|+++... +.. ..+++ ..++. . .+.+..||+||+||++||+|++.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~ 162 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAM 162 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 3677776531 100 00111 12443 1 24567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+|||+++||+.++..+ . +.|.|||++||+.+++..+||+++.+..|++...
T Consensus 163 ~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~ 227 (286)
T PRK13646 163 NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227 (286)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999998775 2 3599999999999999889999999999998754
No 127
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=8.4e-25 Score=213.93 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=110.4
Q ss_pred EeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCC
Q 038101 168 IGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIG 245 (660)
Q Consensus 168 ~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg 245 (660)
.||+++|++. .++.+. +++|++++|+||||||||||+|+|+|++.++.|. |.+ +. ..++. +++
T Consensus 4 ~~l~~~~~~~-----~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~-~g-~~i~~---~~q---- 68 (177)
T cd03222 4 PDCVKRYGVF-----FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEW-DG-ITPVY---KPQ---- 68 (177)
T ss_pred CCeEEEECCE-----EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcE-EEE-CC-EEEEE---Ecc----
Confidence 4789999876 566655 7999999999999999999999999999998764 322 11 11111 111
Q ss_pred ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEE
Q 038101 246 NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQR-GIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 246 ~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~-GvtVI~TtH~~~l~~~i~dril~ 317 (660)
. ..+|+|||||++||++++.+|+++++|||+++||+..+..+ +++ |.++|++||+.+++..+||+++.
T Consensus 69 ---~-~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 144 (177)
T cd03222 69 ---Y-IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHV 144 (177)
T ss_pred ---c-CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEE
Confidence 0 01999999999999999999999999999999999987754 344 49999999999999999999999
Q ss_pred EEcCeE
Q 038101 318 MLIGGV 323 (660)
Q Consensus 318 l~~G~I 323 (660)
+..+..
T Consensus 145 l~~~~~ 150 (177)
T cd03222 145 FEGEPG 150 (177)
T ss_pred EcCCCc
Confidence 987654
No 128
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=220.64 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=125.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++||+++|++. .+++++ +.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFGQV-----EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEECCe-----eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 47899999999865 688887 899999999999999999999999999863 222
Q ss_pred ----CeEEEEcCCCccc-cC------------CCC--C-------------CCCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ----KRVMIVDTSSEIG-GN------------GDI--P-------------HPGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ----krV~~Vdq~~eIa-~~------------~~i--p-------------~~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
..|+|+++...+. .. ... . ..++. ..+.+..+|+|||||++|
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 2467777654321 00 000 0 01221 123457799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|++.+|++||+|||+++||+.++..+ ...|.|+|++||+.+++..+||+++.+..|++...
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEW 226 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEE
Confidence 9999999999999999999999998776 23589999999999998889999999999998653
No 129
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.2e-24 Score=217.08 Aligned_cols=157 Identities=16% Similarity=0.246 Sum_probs=122.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|+.. ..+++++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 2 ~l~~~~l~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (229)
T cd03254 2 EIEFENVNFSYDEK----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRS 77 (229)
T ss_pred eEEEEEEEEecCCC----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhh
Confidence 46799999999742 1578887 8999999999999999999999999999887552
Q ss_pred eEEEEcCCCccccC-------CCCCC------------CCC-----------Cc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN-------GDIPH------------PGI-----------GN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------~~ip~------------~~L-----------g~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++...+... ...+. .++ .. .+....||+|||||++||++++.+
T Consensus 78 ~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 78 MIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred hEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 36666665432110 00000 011 00 123478999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++||+|||+++||+.++..+ ...|.|||++||+.+++. .||+++.+..|++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~ 217 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIE 217 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEE
Confidence 999999999999999998765 235899999999999886 499999999999865
No 130
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=221.53 Aligned_cols=161 Identities=18% Similarity=0.215 Sum_probs=126.2
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-----------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK----------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G----------- 221 (660)
+...++++|++++|+.. .+|+++ +.+|++++|+|+||||||||+++|+|++.+ +.|
T Consensus 9 ~~~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 9 AQPQIKVENLNLWYGEK-----QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred cceeEEEeeeEEEeCCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 34568899999999865 688888 899999999999999999999999999864 333
Q ss_pred ---------CeEEEEcCCCccccC------------CCCC-------------CCCCC------ccccCCCCCHHHHHHH
Q 038101 222 ---------KRVMIVDTSSEIGGN------------GDIP-------------HPGIG------NARRMQVPNSEMQHKV 261 (660)
Q Consensus 222 ---------krV~~Vdq~~eIa~~------------~~ip-------------~~~Lg------~~rrl~vLSgG~qqrv 261 (660)
+.++|+.+...+... .+.. ..++. ..+....||+||+||+
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 135666554322100 0010 01221 1234567999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||++++.+|++||+||||++||+.++..+ ...|.|||++||+.+++..+||+++.+..|++...
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 234 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEF 234 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998775 13489999999999999899999999999998654
No 131
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=220.92 Aligned_cols=162 Identities=15% Similarity=0.250 Sum_probs=127.4
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC----------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK---------- 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G---------- 221 (660)
|.++.++++|++++|+.. .+|+++ |.+|++++|+|||||||||||++|+|++. + +.|
T Consensus 8 ~~~~~l~i~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~ 82 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQH-----HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82 (259)
T ss_pred cCCceEEEeeEEEEECCe-----eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcc
Confidence 567789999999999865 688887 89999999999999999999999999986 2 222
Q ss_pred ----------CeEEEEcCCCcccc------------CCCC-C-------------CCCCCc------cccCCCCCHHHHH
Q 038101 222 ----------KRVMIVDTSSEIGG------------NGDI-P-------------HPGIGN------ARRMQVPNSEMQH 259 (660)
Q Consensus 222 ----------krV~~Vdq~~eIa~------------~~~i-p-------------~~~Lg~------~rrl~vLSgG~qq 259 (660)
..++|+++...+.. ..+. . ..++.. .+....+|+||+|
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 83 KGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQ 162 (259)
T ss_pred ccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHH
Confidence 13666666532210 0000 0 012211 2345679999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||++++++|++||+||||++||+.++..+ ...+.|+|++||+.+.+..+||+++.+..|++...
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999998775 12478999999999999999999999999998653
No 132
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.92 E-value=1.7e-24 Score=220.71 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=127.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 5 ~~l~~~~l~~~~~~~-----~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~ 79 (258)
T PRK11701 5 PLLSVRGLTKLYGPR-----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALS 79 (258)
T ss_pred ceEEEeeeEEEcCCc-----eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCC
Confidence 458899999999865 688887 9999999999999999999999999999876441
Q ss_pred ----------eEEEEcCCCcc--cc--------------CCCC-------------CCCCCCc---cccCCCCCHHHHHH
Q 038101 223 ----------RVMIVDTSSEI--GG--------------NGDI-------------PHPGIGN---ARRMQVPNSEMQHK 260 (660)
Q Consensus 223 ----------rV~~Vdq~~eI--a~--------------~~~i-------------p~~~Lg~---~rrl~vLSgG~qqr 260 (660)
.++|+++.... .. .... ...++.. .+....+|+|||||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 25666655310 00 0000 0113321 24567899999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||++++.+|++||+|||+++||+.+...+ .+ .|.+||++||+.+++..+||+++.+.+|++...
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~ 233 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES 233 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999997765 23 389999999999999999999999999998653
No 133
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=9.5e-25 Score=242.78 Aligned_cols=176 Identities=19% Similarity=0.302 Sum_probs=140.5
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY------------------- 220 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~------------------- 220 (660)
..++|+||++.|... .+...+++++ +++||+++|+|.+||||||+++.|.|++.+..
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 368999999999876 3334688988 99999999999999999999999999998761
Q ss_pred -------CCeEEEEcCCCccc------------------c----------------CCCCCCCCCCccccCCCCCHHHHH
Q 038101 221 -------KKRVMIVDTSSEIG------------------G----------------NGDIPHPGIGNARRMQVPNSEMQH 259 (660)
Q Consensus 221 -------GkrV~~Vdq~~eIa------------------~----------------~~~ip~~~Lg~~rrl~vLSgG~qq 259 (660)
|++|++++|+..-. . .-++|+.... .+..++|||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheLSGG~rQ 161 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCcccCchHHH
Confidence 34677777764210 0 0012222111 2367899999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCch
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDE 331 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~ 331 (660)
|++||+|++.+|++||+||||++||+..+.++ .+.|+++|++|||+..+..+||++++|..|+++..+
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G---- 237 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETG---- 237 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEec----
Confidence 99999999999999999999999999987776 478999999999999999999999999999997753
Q ss_pred hhhcccchHHHHhhcCCCc
Q 038101 332 EAHRRGVQKTVLERKGPST 350 (660)
Q Consensus 332 ~a~~~Gt~~~Iler~~~p~ 350 (660)
..++|+.++.+|+
T Consensus 238 ------~~~~i~~~p~hpY 250 (539)
T COG1123 238 ------PTEEILSNPQHPY 250 (539)
T ss_pred ------CHHHHHhccCCcc
Confidence 5566666655444
No 134
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=220.32 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=124.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.+++++++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.++ .|
T Consensus 7 ~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 7 IIETENLNLFYTDF-----KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred eEEEeeeEEEeCCc-----eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 57899999999865 688887 8999999999999999999999999999752 22
Q ss_pred ------CeEEEEcCCCccccC------------CCCCC--------------CCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDIPH--------------PGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~ip~--------------~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
+.|+|+++...+... ..... .++. ..++...+|+|||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 135666654322100 00000 0121 123557799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.++..+ ...|.|||++||+.+++..+||+++.+..|++...
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998775 23579999999999999999999999999998653
No 135
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=1.2e-24 Score=218.45 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=122.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCC-----------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL--ANDYKK----------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~Gk----------------- 222 (660)
++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++ .++.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVEDK-----EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75 (243)
T ss_pred CeEeeEEEEECCE-----EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhh
Confidence 3689999999865 688887 8999999999999999999999999995 455331
Q ss_pred --eEEEEcCCCcccc--------------CCC------CC-------------CCCCCc---cccCC-CCCHHHHHHHHH
Q 038101 223 --RVMIVDTSSEIGG--------------NGD------IP-------------HPGIGN---ARRMQ-VPNSEMQHKVLI 263 (660)
Q Consensus 223 --rV~~Vdq~~eIa~--------------~~~------ip-------------~~~Lg~---~rrl~-vLSgG~qqrv~I 263 (660)
.++|+++...+.. ... +. ..++.. .+.+. .+|+|||||++|
T Consensus 76 ~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~l 155 (243)
T TIGR01978 76 RAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEI 155 (243)
T ss_pred ccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHH
Confidence 2566665532210 000 00 013321 13444 499999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEEcCeEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI-MNPSLEMLIGGVQN 325 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i-~dril~l~~G~I~~ 325 (660)
|++++.+|++||+||||++||+.++..+ .+.|.|||++||+.+++..+ ||+++.+..|++..
T Consensus 156 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 156 LQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 9999999999999999999999998775 34689999999999999888 89999999999865
No 136
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.7e-25 Score=229.31 Aligned_cols=176 Identities=17% Similarity=0.266 Sum_probs=138.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-cC---------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-ND--------------------- 219 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-p~--------------------- 219 (660)
++|+||+..|... .|...+++++ +++||+++|+|.+||||||+.+.|+|++. +.
T Consensus 2 L~v~nL~v~f~~~-~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTD-AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecC-CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 5799999999653 2345788888 99999999999999999999999999997 32
Q ss_pred -----CCCeEEEEcCCCccccC----------------CCC--------------CCCCCCc-----cccCCCCCHHHHH
Q 038101 220 -----YKKRVMIVDTSSEIGGN----------------GDI--------------PHPGIGN-----ARRMQVPNSEMQH 259 (660)
Q Consensus 220 -----~GkrV~~Vdq~~eIa~~----------------~~i--------------p~~~Lg~-----~rrl~vLSgG~qq 259 (660)
.|+.|++|+|+..-+.. ... ...++.. .....+|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 14567777776421100 000 0112322 1356789999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCch
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDE 331 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~ 331 (660)
||+||.|++.+|++||.||||++||...+.++ .+.|.++|++|||+..+..+||++++|..|++++.+
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g---- 236 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG---- 236 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC----
Confidence 99999999999999999999999999987775 358999999999999999999999999999998743
Q ss_pred hhhcccchHHHHhhcCCCce
Q 038101 332 EAHRRGVQKTVLERKGPSTF 351 (660)
Q Consensus 332 ~a~~~Gt~~~Iler~~~p~f 351 (660)
..++++..+.+|+.
T Consensus 237 ------~~~~i~~~P~HPYT 250 (316)
T COG0444 237 ------PVEEIFKNPKHPYT 250 (316)
T ss_pred ------CHHHHhcCCCChHH
Confidence 56677777655553
No 137
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.92 E-value=1.5e-24 Score=217.66 Aligned_cols=158 Identities=16% Similarity=0.246 Sum_probs=122.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------Ce
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------KR 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------kr 223 (660)
++++|++++|+.. ...+++++ +.+|++++|+|||||||||||++|+|++.++.| +.
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (237)
T cd03252 1 ITFEHVRFRYKPD---GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77 (237)
T ss_pred CEEEEEEEecCCC---CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhc
Confidence 3689999999642 12578887 899999999999999999999999999988754 23
Q ss_pred EEEEcCCCccccC----------CCCCC---------CCC-----------Cc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 224 VMIVDTSSEIGGN----------GDIPH---------PGI-----------GN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~~----------~~ip~---------~~L-----------g~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+++...+... ..... .++ .. .+....||+|||||++||++++.+|
T Consensus 78 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 78 VGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 6777766432110 00000 000 00 1345789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|||+++||+.++..+ ...|.+||++||+.+++. .||+++.+..|++...
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~ 217 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQ 217 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 99999999999999998765 135899999999999986 5999999999998654
No 138
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=225.82 Aligned_cols=162 Identities=19% Similarity=0.325 Sum_probs=127.1
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------- 222 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------- 222 (660)
.+..++++||+++|++. ...+|+++ |.+|++++|+||||||||||+++|+|++.|+.|+
T Consensus 2 ~~~~l~~~~l~~~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 2 KEEIIRVEHISFRYPDA---ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWD 78 (279)
T ss_pred CCceEEEEEEEEEeCCC---CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHH
Confidence 44568999999999742 11478887 8999999999999999999999999999987552
Q ss_pred ---eEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 ---RVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 ---rV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++... +... ..++ ..++.. .+.+..+|+|||||++||++++.+
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ 158 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 3666666531 1100 0011 012222 245678999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+|||+++||+.++..+ .+ .|.|||++||+.+++. .||+++.+..|++.+.
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~ 221 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEE 221 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEE
Confidence 999999999999999998776 23 3899999999999887 5999999999998654
No 139
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.8e-24 Score=219.43 Aligned_cols=158 Identities=14% Similarity=0.266 Sum_probs=124.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.++++||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.++ .|
T Consensus 4 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYGSN-----HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeCCe-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 47899999999865 688888 8999999999999999999999999998762 23
Q ss_pred ------CeEEEEcCCCccccC-------------CCC--C-------------CCCCC------ccccCCCCCHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN-------------GDI--P-------------HPGIG------NARRMQVPNSEMQHKV 261 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~-------------~~i--p-------------~~~Lg------~~rrl~vLSgG~qqrv 261 (660)
.+++|+++...+... ... + ..++. ..+....+|+|||||+
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRL 158 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHH
Confidence 135666554322100 000 0 01221 1234567999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+.+..+||+++.+..|++...
T Consensus 159 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 159 VIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 999999999999999999999999998775 12478999999999999899999999999998654
No 140
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=1e-24 Score=242.98 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=128.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++. .+|+++ +++|++++|+|||||||||||++|+|++.|+.|.
T Consensus 11 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 11 LLCARSISKQYSGV-----EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred eEEEEeEEEEeCCc-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 58899999999875 688888 8999999999999999999999999999887441
Q ss_pred -eEEEEcCCCccccC--------CCC--------------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 223 -RVMIVDTSSEIGGN--------GDI--------------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~--------~~i--------------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
.++|+.+...+... ... ...++.. .+++..||+|||||++||++++++|++||+|
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 36677665432110 000 0112321 2466789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 278 EIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~ 221 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALS 221 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999997775 35699999999999999999999999999998653
No 141
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=225.35 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=125.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++.......+|+++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 4689999999975310001378887 9999999999999999999999999999886542
Q ss_pred -----eEEEEcCCCc--c-cc-----------CCCCC-------------CCCCC-c--cccCCCCCHHHHHHHHHHHHH
Q 038101 223 -----RVMIVDTSSE--I-GG-----------NGDIP-------------HPGIG-N--ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 223 -----rV~~Vdq~~e--I-a~-----------~~~ip-------------~~~Lg-~--~rrl~vLSgG~qqrv~IA~aL 267 (660)
.|+|+.+... + .. ..+.. ..++. . .+.+..||+|||||++||+|+
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 2556655431 1 00 00000 11331 1 245678999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+.+|++||+|||+++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 166 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999998765 22 489999999999999899999999999998653
No 142
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=9.7e-25 Score=213.75 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=117.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--cCCCC--------------eE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--NDYKK--------------RV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p~~Gk--------------rV 224 (660)
.+++++++++|+... +...+++++ +.+|++++|+|||||||||||++|+|++. ++.|. .+
T Consensus 3 ~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 467999999997410 012578887 89999999999999999999999999863 45442 23
Q ss_pred EEEcCCCccccCCCCCCCCCCcc----ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh
Q 038101 225 MIVDTSSEIGGNGDIPHPGIGNA----RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ 293 (660)
Q Consensus 225 ~~Vdq~~eIa~~~~ip~~~Lg~~----rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~ 293 (660)
+|+.+...+ ++...+... .....||+||+||++||++++.+|++||+|||+++||+.++..+ ++
T Consensus 82 ~~~~q~~~~-----~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~ 156 (192)
T cd03232 82 GYVEQQDVH-----SPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156 (192)
T ss_pred EEecccCcc-----ccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 333332211 111111111 11237999999999999999999999999999999999997776 34
Q ss_pred cCCEEEEEEcChh-HHHHhcCcEEEEEc-CeEEE
Q 038101 294 RGIQLVATAHGVT-IENLIMNPSLEMLI-GGVQN 325 (660)
Q Consensus 294 ~GvtVI~TtH~~~-l~~~i~dril~l~~-G~I~~ 325 (660)
.|.|+|++||+.+ .+..+||+++.+.. |++.+
T Consensus 157 ~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 157 SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 5899999999998 46778999999998 88754
No 143
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=224.94 Aligned_cols=162 Identities=18% Similarity=0.207 Sum_probs=126.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|++.......+|+++ +++|++++|+|||||||||||++|+|++.|+.|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 679999999975210012478887 8999999999999999999999999999876441
Q ss_pred ---eEEEEcCCC--cccc------------CCCCC-------------CCCCCc---cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 ---RVMIVDTSS--EIGG------------NGDIP-------------HPGIGN---ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 ---rV~~Vdq~~--eIa~------------~~~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.|+|+++.. .+.. ...+. ..++.. .+++..||+|||||++||+|++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM 162 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 356666653 1110 00010 123431 24567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 163 EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999997775 34589999999999999999999999999998653
No 144
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-24 Score=216.51 Aligned_cols=157 Identities=21% Similarity=0.256 Sum_probs=121.8
Q ss_pred EEEEeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRVMIV 227 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV~~V 227 (660)
++++||+++|++. ..--++ +.+|++++|+||||||||||+++|+|++.++.| ..++|+
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 6799999999753 111123 899999999999999999999999999988755 236666
Q ss_pred cCCCcccc-C--------CCCCC-----------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 228 DTSSEIGG-N--------GDIPH-----------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 228 dq~~eIa~-~--------~~ip~-----------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
++...+.. . ...+. .++.. .+.+..+|+||+||++||++++.+|++||+|||
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 156 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEP 156 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 66532211 0 00010 11211 145567999999999999999999999999999
Q ss_pred CCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 280 GTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 280 gsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 157 ~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 157 FSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999987665 22 489999999999999999999999999998654
No 145
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.1e-24 Score=215.76 Aligned_cols=149 Identities=16% Similarity=0.217 Sum_probs=117.3
Q ss_pred eEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------------e
Q 038101 169 GLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------------R 223 (660)
Q Consensus 169 ~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------------r 223 (660)
+|+++|++. .+ ++ +.+ ++++|+||||||||||+++|+|++.|+.|+ .
T Consensus 5 ~l~~~~~~~-----~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 5 DIEKRLPDF-----TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred eeeEecCCe-----ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 899999985 33 66 899 999999999999999999999999887552 2
Q ss_pred EEEEcCCCccccC-----------CCC-C------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 224 VMIVDTSSEIGGN-----------GDI-P------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 224 V~~Vdq~~eIa~~-----------~~i-p------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
++|+++...+... ... + ..++.. .+.+..+|+|||||++||++++.+|++||+|
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5555554322100 000 0 012221 2456779999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|||++||+.++..+ ++ .|.|||++||+.+++..+||+++.+..|++..
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999998776 23 38999999999999999999999999998753
No 146
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=225.64 Aligned_cols=163 Identities=19% Similarity=0.304 Sum_probs=128.0
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC---C------------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY---K------------ 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~---G------------ 221 (660)
|+|..++++|++++|++. ...+++++ +.+|++++|+||||||||||+++|+|++.++. |
T Consensus 1 ~~~~~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 1 MKDNIVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77 (282)
T ss_pred CCCceEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC
Confidence 467789999999999642 01478877 89999999999999999999999999998764 2
Q ss_pred ------CeEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 222 ------krV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~a 266 (660)
..++|+++... +... ..+. ..++.. .+.+..+|+||+||++||+|
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara 157 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI 157 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 24677766532 1100 0000 012221 24567899999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++++|++||+|||+++||+.++..+ .+ .|.|||++||+.+++. +||+++.+..|++...
T Consensus 158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~ 224 (282)
T PRK13640 158 LAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQ 224 (282)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999999999999998765 23 4899999999999985 7999999999998753
No 147
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=9.4e-25 Score=225.59 Aligned_cols=159 Identities=19% Similarity=0.248 Sum_probs=126.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|++. ..+|+++ +.+|++++|+|+||||||||+++|+|++.|+.|.
T Consensus 3 ~l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (277)
T PRK13652 3 LIETRDLCYSYSGS----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78 (277)
T ss_pred eEEEEEEEEEeCCC----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 47899999999632 1588888 8999999999999999999999999999887552
Q ss_pred eEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 RVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 rV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.++|+.+... +... ..+. ..++.. .+.+..+|+|||||++||+|++.+|++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l 158 (277)
T PRK13652 79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV 158 (277)
T ss_pred heEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3566665531 1100 0010 012321 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+||||++||+.++..+ .+ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~ 219 (277)
T PRK13652 159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEE
Confidence 999999999999987775 23 489999999999999899999999999998653
No 148
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2e-24 Score=228.65 Aligned_cols=164 Identities=16% Similarity=0.248 Sum_probs=127.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|++++|+........+|+++ |++|++++|+|+||||||||+++|+|++.++.|.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 45889999999974211112588888 8999999999999999999999999999886541
Q ss_pred -----------------eEEEEcCCCc--ccc--------CC----CCC-------------CCCCCc---cccCCCCCH
Q 038101 223 -----------------RVMIVDTSSE--IGG--------NG----DIP-------------HPGIGN---ARRMQVPNS 255 (660)
Q Consensus 223 -----------------rV~~Vdq~~e--Ia~--------~~----~ip-------------~~~Lg~---~rrl~vLSg 255 (660)
+|+|+.+..+ +.. .+ +.+ ..++.. .+....||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 2556655431 100 00 000 013321 245678999
Q ss_pred HHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 256 EMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 256 G~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||||++||+|++++|++||+||||++||+.++..+ .++|.|||++||+.+.+..+||+++++..|++...
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~ 257 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKT 257 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999998765 34699999999999998889999999999998654
No 149
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.92 E-value=1.4e-24 Score=215.29 Aligned_cols=158 Identities=13% Similarity=0.204 Sum_probs=121.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|++. ...+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 2 ~l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 78 (220)
T cd03245 2 RIEFRNVSFSYPNQ---EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRR 78 (220)
T ss_pred eEEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHh
Confidence 36799999999752 01578887 8999999999999999999999999999877541
Q ss_pred eEEEEcCCCccccC-------CCCCC------------CCCCcc--c-----------cCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN-------GDIPH------------PGIGNA--R-----------RMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------~~ip~------------~~Lg~~--r-----------rl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++...+... ..... .++... + .+..||+|||||++||++++.+
T Consensus 79 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 79 NIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred hEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 36666665432110 00000 011110 1 2358999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++||+||||++||+.++..+. ..+.+||++||+.++. .+||+++.+.+|++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 9999999999999999987761 2348999999999987 5899999999998743
No 150
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=233.60 Aligned_cols=177 Identities=20% Similarity=0.274 Sum_probs=138.2
Q ss_pred eEEEEeEEEEECccccccccc-------------------cccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 038101 164 KGAIIGLTCRVGRAVSGSANL-------------------LQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~i-------------------L~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G 221 (660)
.++++|++|-||........+ +.++ ++.||++.|+|-+|||||||+|+|+|++.|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 577889999888753321112 2233 889999999999999999999999999999977
Q ss_pred C----------------------eEEEEcCCCccccCCCCCCC-------------------------------CCCc--
Q 038101 222 K----------------------RVMIVDTSSEIGGNGDIPHP-------------------------------GIGN-- 246 (660)
Q Consensus 222 k----------------------rV~~Vdq~~eIa~~~~ip~~-------------------------------~Lg~-- 246 (660)
+ ++..|+|+ .+.+||. ++..
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~-----FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQS-----FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhh-----hccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh
Confidence 4 12222222 1223432 2211
Q ss_pred cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
.+++.+|||||||||.||||++.+|++|++|||+++|||.-+.++ ++..+|||++|||++++..+.|+|.+|
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 256789999999999999999999999999999999999987776 467899999999999999999999999
Q ss_pred EcCeEEEEecCchhhhcccchHHHHhhcCCCceeEEE
Q 038101 319 LIGGVQNVTLGDEEAHRRGVQKTVLERKGPSTFSCAV 355 (660)
Q Consensus 319 ~~G~I~~V~lgd~~a~~~Gt~~~Iler~~~p~f~~~V 355 (660)
.+|++.+++ ++++|+..+++.+...++
T Consensus 239 kdG~ivQ~G----------tp~eIl~~PAndYV~~Fv 265 (386)
T COG4175 239 KDGEIVQVG----------TPEEILLNPANDYVRDFV 265 (386)
T ss_pred cCCeEEEeC----------CHHHHHcCccHHHHHHHH
Confidence 999998864 788888877665544444
No 151
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2e-24 Score=221.56 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=125.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G------------- 221 (660)
..++++|++++|++. .+|+++ +.+|++++|+|||||||||||++|+|++. ++.|
T Consensus 20 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYGEK-----RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeCCc-----eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 357899999999865 688887 89999999999999999999999999863 3323
Q ss_pred -------CeEEEEcCCCccccC------------CCC-C-------------CCCCC------ccccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDI-P-------------HPGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~i-p-------------~~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+... ... . ..++. ..+....+|+|||||++
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 236666655322100 000 0 01121 12456779999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++.+|++||+||||++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998776 23478999999999999999999999999998664
No 152
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.8e-24 Score=217.88 Aligned_cols=159 Identities=16% Similarity=0.268 Sum_probs=124.5
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhc---ccc--CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARV---LAN--DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~Iagl---L~p--~~G------------- 221 (660)
..++++|++++|+.. .+++++ +.+|++++|+||||||||||+++|+|+ +.+ +.|
T Consensus 2 ~~l~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 2 VKIDARDVNFWYGDF-----HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred cEEEEEEEEEEECCE-----eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 467899999999865 688887 899999999999999999999999997 333 122
Q ss_pred -------CeEEEEcCCCccccC------------CCCC--------------CCCCCc------cccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDIP--------------HPGIGN------ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~ip--------------~~~Lg~------~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+... .... ..++.. .+....+|+|||||++
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 156 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLC 156 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHH
Confidence 136777665322110 0000 012211 1345679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...|.+||++||+.+.+..+||+++.+..|++...
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~ 226 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEY 226 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEE
Confidence 99999999999999999999999998776 23579999999999999899999999999998654
No 153
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=218.96 Aligned_cols=161 Identities=18% Similarity=0.286 Sum_probs=125.6
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK------------ 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G------------ 221 (660)
|..++++|++++|+.. .+|+++ |.+|++++|+||||||||||+++|+|++. + +.|
T Consensus 2 ~~~l~~~nl~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 2 NNKVKLEQLNVHFGKN-----HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred CcEEEEEEEEEEeCCe-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 3457899999999865 688887 89999999999999999999999999985 2 222
Q ss_pred --------CeEEEEcCCCccccC-------------CC-CC-------------CCCCCc------cccCCCCCHHHHHH
Q 038101 222 --------KRVMIVDTSSEIGGN-------------GD-IP-------------HPGIGN------ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 --------krV~~Vdq~~eIa~~-------------~~-ip-------------~~~Lg~------~rrl~vLSgG~qqr 260 (660)
+.++|+++...+... .. .. ..++.. .+....+|+||+||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred cCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 236666665322110 00 00 012211 12456799999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++||++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...+
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999987765 224689999999999999999999999999987643
No 154
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1e-24 Score=225.10 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=123.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++||+++|++. ..+|+++ |++|++++|+|||||||||||++|+|++.++.|.
T Consensus 2 l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (274)
T PRK13644 2 IRLENVSYSYPDG----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 (274)
T ss_pred EEEEEEEEEcCCC----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHh
Confidence 6799999999532 1588888 9999999999999999999999999999887541
Q ss_pred eEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 RVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 rV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.++|+++... +... .++. ..++.. .+.+..+|+|||||++||+|++.+|++
T Consensus 78 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (274)
T PRK13644 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157 (274)
T ss_pred heEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3566665432 1100 0000 012221 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+||||++||+.++..+ .+.|.|||++||+.+.+. .||+++.+..|++...
T Consensus 158 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~ 216 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVLE 216 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEEE
Confidence 999999999999987665 346999999999999985 6999999999998654
No 155
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-24 Score=223.35 Aligned_cols=160 Identities=22% Similarity=0.336 Sum_probs=125.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|++. +...+|+++ |.+|++++|+||||||||||+++|+|++.|+.| +
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence 57899999999742 011478887 899999999999999999999999999988755 2
Q ss_pred eEEEEcCCCc--cccC--------C----CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 RVMIVDTSSE--IGGN--------G----DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 rV~~Vdq~~e--Ia~~--------~----~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
+++|+.+... +... + ++. ..++.. .+.+..||+||+||++||+|++++|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3667766531 1110 0 010 012221 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+||||++||+.++..+ ++ .|.|||++||+.+.+. +||+++.+..|++...
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~~ 221 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVEST 221 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 999999999999987765 23 4999999999999884 7999999999998653
No 156
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.92 E-value=1.9e-24 Score=221.55 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=126.2
Q ss_pred eEEEEeEEEEECccc----cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------
Q 038101 164 KGAIIGLTCRVGRAV----SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v----~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------- 221 (660)
.++++||++.|+..- .+...+|+++ +.+|++++|+|||||||||||++|+|++.++.|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 367999999996310 0112588887 899999999999999999999999999988744
Q ss_pred ------CeEEEEcCCCc--ccc--------------CCCCC-------------CCCCC-c--cccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSE--IGG--------------NGDIP-------------HPGIG-N--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~e--Ia~--------------~~~ip-------------~~~Lg-~--~rrl~vLSgG~qqrv~I 263 (660)
+.|+|+++... +.. ...+. ..++. . .+....+|+||+||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 13677766531 110 00111 11332 1 24567899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|++++|++||+|||+++||+.++..+ .+ .|.|||++||+.+.+..+||+++.+..|++...
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999986654 23 489999999999999999999999999998653
No 157
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.4e-24 Score=220.70 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=124.4
Q ss_pred ceEEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------Ce
Q 038101 163 RKGAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------KR 223 (660)
Q Consensus 163 ~~LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------kr 223 (660)
-.++++||+++|+ +. .+++++ +.+|++++|+|||||||||||++|+|++.|+.| ..
T Consensus 5 ~~l~~~~l~~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 5 AGIVVNDVTVTWRNGH-----TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred ceEEEEeEEEEecCCc-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 3578999999996 33 688887 899999999999999999999999999988744 24
Q ss_pred EEEEcCCCcccc-----C-CC-----C--------CC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 224 VMIVDTSSEIGG-----N-GD-----I--------PH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 224 V~~Vdq~~eIa~-----~-~~-----i--------p~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
++|+++...+.. . .. . +. .++.. .+.+..+|+||+||++||++++.
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 777776532200 0 00 0 00 01211 24567799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+|++||+|||+++||+.++..+ ++.|.|||++||+.+.+..+||+++.+ .|++..
T Consensus 160 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 160 QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 9999999999999999997775 346899999999999999999998766 788754
No 158
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=1.9e-24 Score=220.91 Aligned_cols=156 Identities=18% Similarity=0.276 Sum_probs=125.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSEI 233 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~eI 233 (660)
.++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.++.| ..++|+++...+
T Consensus 4 ~l~~~~l~~~~~~~-----~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~ 78 (251)
T PRK09544 4 LVSLENVSVSFGQR-----RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78 (251)
T ss_pred EEEEeceEEEECCc-----eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccc
Confidence 57899999999865 688887 899999999999999999999999999988765 247788776432
Q ss_pred ccC------------CCCC---------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 234 GGN------------GDIP---------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 234 a~~------------~~ip---------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
... .... ..++.. .+.+..+|+||+||++||++++++|++||+|||+++||+.++..
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 79 DTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred ccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 110 0000 112222 24567899999999999999999999999999999999999776
Q ss_pred H-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 291 I-------AQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 291 i-------~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+ .+. |.|||++||+.+++..+||+++.+. +++..
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~ 200 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICC 200 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEe
Confidence 5 233 8999999999999999999999985 56544
No 159
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.3e-24 Score=219.03 Aligned_cols=158 Identities=18% Similarity=0.251 Sum_probs=124.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G-------------- 221 (660)
.++++|++++|+.. .+|+++ |++|++++|+||||||||||+++|+|++. ++.|
T Consensus 13 ~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 13 KIQVRNLNFYYGKF-----HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred eEEEEEEEEEeCCe-----EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 47899999999865 688887 89999999999999999999999999985 2323
Q ss_pred ------CeEEEEcCCCccccC-------------CCCCC-------------CCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN-------------GDIPH-------------PGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~-------------~~ip~-------------~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
++++|+++...+... ..++. .++. ..+....+|+||+||++|
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 236666665322110 00110 1221 123457799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|++.+|++||+|||+++||+.++..+ ...|.|||++||+.+.+..+||+++.+..|++...
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999987765 23478999999999999899999999999998654
No 160
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.92 E-value=1.3e-24 Score=235.32 Aligned_cols=145 Identities=15% Similarity=0.202 Sum_probs=113.2
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------------eEEEEcCCCcc
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------------------RVMIVDTSSEI 233 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------------------rV~~Vdq~~eI 233 (660)
.+++++ +.+|++++|+||||||||||+|+|+|++.|+.|+ +++|++|...+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 455565 8899999999999999999999999999887552 24555443322
Q ss_pred ccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccH
Q 038101 234 GGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEA 285 (660)
Q Consensus 234 a~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~ 285 (660)
... .+++ ..++.. .+.+..||+|||||++||+|++++|+|||+|||+++||+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 100 0011 012221 245677999999999999999999999999999999999
Q ss_pred HHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 286 MAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 286 ~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
..+..+ . +.|.|||++||+.+++..+||+++.|.+|++...+
T Consensus 198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g 247 (382)
T TIGR03415 198 LIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHG 247 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 998776 2 34999999999999999999999999999986643
No 161
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.92 E-value=1.4e-24 Score=240.16 Aligned_cols=158 Identities=21% Similarity=0.184 Sum_probs=125.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|++. .+|+++ +.+|++++|+||||||||||||+|+|++.|+.|.
T Consensus 3 ~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 3 SLQISQGTFRLSDT-----KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred eEEEEeEEEEcCCe-----eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 47899999999865 688887 8999999999999999999999999999887553
Q ss_pred eEEEEcCCCccc---------cC---CCC--------------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIG---------GN---GDI--------------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa---------~~---~~i--------------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
.++++.+...+. .. ..+ ...++.. .+++..||+|||||++||+|++++|++|
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLL 157 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 133343321110 00 000 0012222 2466889999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+||||++||+.++..+ ++.|.|||++||+.+.+..+||+++.+..|++...
T Consensus 158 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 216 (490)
T PRK10938 158 ILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET 216 (490)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999998775 34589999999999999999999999999998653
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2e-24 Score=216.92 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=125.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV~ 225 (660)
+.+++|+++|+.. .+++++ +++|++++|+||||||||||+++|+|++.+..| +.++
T Consensus 1 l~~~~l~~~~~~~-----~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF-----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe-----eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceE
Confidence 3589999999865 688887 899999999999999999999999999988755 2355
Q ss_pred EEcCCCcccc-C------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIGG-N------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa~-~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
|+.+...+.. . .... ..++.. .+.+..+|+||+||++||++++.+|++||+|
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 6655432210 0 0000 013322 2455779999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+++||+.++..+ ++ .|.|||++||+..++..+||+++.+..|++...
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~ 212 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999998776 23 389999999999999899999999999998653
No 163
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-24 Score=216.71 Aligned_cols=158 Identities=19% Similarity=0.220 Sum_probs=125.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.++++||+++|++. .+++++ |.+|++++|+||||||||||+++|+|++.++ .|
T Consensus 4 ~l~~~~l~~~~~~~-----~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYHKH-----QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEECCe-----eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 57899999999865 688887 8999999999999999999999999998864 12
Q ss_pred ------CeEEEEcCCCccccC------------CCCC-C-------------CCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDIP-H-------------PGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~ip-~-------------~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
+.++|+++...+... .+.. . .++. ..+....+|+||+||++|
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred ChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 236666665432110 0000 0 1221 124556799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.++..+ ...|.|||++||+.+++..+||+++.+..|++...
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY 227 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999999999987765 23589999999999999999999999999998654
No 164
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=2e-24 Score=213.97 Aligned_cols=154 Identities=17% Similarity=0.250 Sum_probs=121.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV~ 225 (660)
++++||+++|++. +.++ +.+|++++|+||||||||||+++|+|++.++.| +.++
T Consensus 1 ~~~~~l~~~~~~~-------~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEHL-------PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCCc-------ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceE
Confidence 3588999999742 3344 899999999999999999999999999988755 2366
Q ss_pred EEcCCCcccc-C--------C---CC--C------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIGG-N--------G---DI--P------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa~-~--------~---~i--p------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
|+++...+.. . . .. + ..++.. .+.+..+|+||+||++||++++.+|++||+|
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 153 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD 153 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 6666543211 0 0 00 0 012221 2456789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||+++||+.++..+ .+ .|.|||++||+.++...+||+++.+..|++..
T Consensus 154 EPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 154 EPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999987765 23 48999999999999888999999999999865
No 165
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-24 Score=222.82 Aligned_cols=158 Identities=21% Similarity=0.317 Sum_probs=125.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|++. ..+++++ |.+|++++|+||||||||||+++|+|++.+..|
T Consensus 2 l~~~~l~~~~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (275)
T PRK13639 2 LETRDLKYSYPDG----TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVR 77 (275)
T ss_pred EEEEEEEEEeCCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHH
Confidence 6799999999632 1578887 999999999999999999999999999988644
Q ss_pred CeEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 KRVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 krV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..|+|+.+... +... .... ..++.. .+.+..||+||+||++||++++.+|+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 157 (275)
T PRK13639 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157 (275)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12566666531 1100 0000 012321 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+||||++||+.++..+ .+.|.|||++||+.+.+..+||+++.+..|++...
T Consensus 158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~ 218 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999998765 34599999999999999999999999999998654
No 166
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.92 E-value=1.6e-24 Score=221.25 Aligned_cols=158 Identities=21% Similarity=0.296 Sum_probs=126.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC---C----------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY---K---------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~---G---------------- 221 (660)
.++++||++.|++. .+|+++ +.+|++++|+||||||||||+++|+|++.|+. |
T Consensus 4 ~l~~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFNQH-----QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeCCe-----EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 57899999999865 788888 89999999999999999999999999997642 2
Q ss_pred -------CeEEEEcCCCccccC---------C---CCC---------C-------------CCCCc--cccCCCCCHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN---------G---DIP---------H-------------PGIGN--ARRMQVPNSEMQ 258 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~---------~---~ip---------~-------------~~Lg~--~rrl~vLSgG~q 258 (660)
.+++|+++...+... . ..+ . .++.. .+.+..||+|||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHH
Confidence 135677665322110 0 000 0 12221 245677999999
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 259 HKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 259 qrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++||+|++.+|+|||+|||+++||+.++..+ ++ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~ 234 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYD 234 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998765 23 489999999999999999999999999998653
No 167
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.92 E-value=3.7e-24 Score=229.08 Aligned_cols=151 Identities=22% Similarity=0.242 Sum_probs=118.4
Q ss_pred eEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------------e
Q 038101 169 GLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------------R 223 (660)
Q Consensus 169 ~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------------r 223 (660)
||+++|++. . + ++ +++|++++|+||||||||||||+|+|++.|+.|. .
T Consensus 4 ~l~~~~~~~-----~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~ 76 (354)
T TIGR02142 4 RFSKRLGDF-----S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRR 76 (354)
T ss_pred EEEEEECCE-----E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCC
Confidence 789999864 3 2 55 8999999999999999999999999999887542 2
Q ss_pred EEEEcCCCccccC-----------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 224 VMIVDTSSEIGGN-----------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 224 V~~Vdq~~eIa~~-----------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
++|+++...+... .... ..++.. .+.+..||+|||||++||+|++.+|++||||
T Consensus 77 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD 156 (354)
T TIGR02142 77 IGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD 156 (354)
T ss_pred eEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5555554322100 0000 012221 2456789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+++||+.++..+ .+ .|.|+|++||+.+++..+||+++.+..|++...
T Consensus 157 EPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 213 (354)
T TIGR02142 157 EPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213 (354)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEE
Confidence 99999999997765 23 489999999999999999999999999998654
No 168
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.4e-24 Score=241.38 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=128.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|++. .+++++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 4 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 4 PYISMAGIGKSFGPV-----HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred ceEEEeeeEEEcCCe-----EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 468899999999865 688888 899999999999999999999999999987644
Q ss_pred -CeEEEEcCCCcccc---------CC--------CC---C-------------CCCCCc--cccCCCCCHHHHHHHHHHH
Q 038101 222 -KRVMIVDTSSEIGG---------NG--------DI---P-------------HPGIGN--ARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 222 -krV~~Vdq~~eIa~---------~~--------~i---p-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~ 265 (660)
+.|+|+.+...+.. .. .. . ..++.. .+++..||+|||||++||+
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAK 158 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHH
Confidence 13677766532210 00 00 0 012221 2456789999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+++.+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999998775 35699999999999999999999999999998653
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.6e-24 Score=216.75 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=124.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++|++++|+.. .+++++ +++|++++|+|||||||||||++|+|++.+ +.|
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYGEK-----KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeCCc-----eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 57899999999865 678887 899999999999999999999999999863 322
Q ss_pred ------CeEEEEcCCCccccC------------CCC-CC-------------CCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDI-PH-------------PGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~i-p~-------------~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
+.++|+++...+... ... +. .++. ..+....+|+||+||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred hHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 236666654322100 000 00 1221 123556799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+.+..+||+++.+..|++...
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~ 226 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998776 12478999999999988899999999999998653
No 170
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=1.7e-24 Score=240.39 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=128.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
+.++++||+++|++. .+|+++ +.+|++++|+||||||||||||+|+|++.|+.|
T Consensus 3 ~~i~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 3 ALLQLKGIDKAFPGV-----KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred ceEEEeeeEEEeCCe-----EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 358899999999865 688888 899999999999999999999999999988744
Q ss_pred -CeEEEEcCCCcccc---------CC--------CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHc
Q 038101 222 -KRVMIVDTSSEIGG---------NG--------DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 -krV~~Vdq~~eIa~---------~~--------~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.++|+.+...+.. .+ .+. ..++.. .+++..||+|||||++||+|++
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 157 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLS 157 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHh
Confidence 13667666432110 00 000 012222 2456789999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++|++|||||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~ 222 (501)
T PRK10762 158 FESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE 222 (501)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999987765 35689999999999999999999999999998653
No 171
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.3e-24 Score=221.42 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=127.2
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------- 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------- 221 (660)
++.+.+++++++++|++.. ..+++++ +++|++++|+||||||||||+++|+|++.++.|
T Consensus 3 ~~~~~l~i~~l~~~~~~~~---~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQSDA---SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFE 79 (269)
T ss_pred CCCceEEEEEEEEEcCCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 4566789999999997520 1478887 899999999999999999999999999988744
Q ss_pred ---CeEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 ---KRVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 ---krV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.++|+++... +... ...+ ..++.. .+....+|+||+||++||+|++.
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 23666666532 1100 0000 012221 24567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+|||+++||+.++..+ .+ .|.|||++||+.+++.. ||+++.+..|++...
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEe
Confidence 9999999999999999998765 23 48999999999998875 999999999998654
No 172
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.5e-24 Score=217.23 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=125.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------- 221 (660)
++++++|++++|++. .+|+++ +.+|++++|+|+|||||||||++|+|++.+ +.|
T Consensus 3 ~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYGEK-----QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEECCe-----eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 467899999999865 688887 899999999999999999999999999764 323
Q ss_pred -------CeEEEEcCCCccccC------------CCCC--------------CCCCC------ccccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDIP--------------HPGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~ip--------------~~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+... .... ..++. ..+....+|+|||||++
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 236666665432110 0000 01221 12356789999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||++++.+|++||+|||+++||+.++..+ ...+.+||++||+.+++..+||+++.+.+|++....
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999998775 123689999999999999999999999999987643
No 173
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.7e-24 Score=219.87 Aligned_cols=161 Identities=19% Similarity=0.264 Sum_probs=126.8
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-----------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK----------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G----------- 221 (660)
....++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.+ +.|
T Consensus 16 ~~~~l~~~nl~~~~~~~-----~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 16 TEIKMRARDVSVFYGEK-----QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CCceEEEEeEEEEECCE-----EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 44578999999999865 688888 899999999999999999999999999864 333
Q ss_pred ---------CeEEEEcCCCccccC------------CCC--C-------------CCCCCc------cccCCCCCHHHHH
Q 038101 222 ---------KRVMIVDTSSEIGGN------------GDI--P-------------HPGIGN------ARRMQVPNSEMQH 259 (660)
Q Consensus 222 ---------krV~~Vdq~~eIa~~------------~~i--p-------------~~~Lg~------~rrl~vLSgG~qq 259 (660)
+.++|+.+...+... .++ . ..++.. .+....+|+||+|
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 135666654322100 010 0 013311 1345779999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||++++.+|++||+|||+++||+.++..+ ...|.|||++||+.+.+..+||+++.+..|++...
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999998775 12478999999999999999999999999998654
No 174
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.92 E-value=1.2e-24 Score=218.08 Aligned_cols=155 Identities=21% Similarity=0.292 Sum_probs=121.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-----CccccC
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS-----SEIGGN 236 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~-----~eIa~~ 236 (660)
+.+++++++|+.. .+++++ +.+|++++|+||||||||||+++|+|++.++.|. |.+-... ......
T Consensus 23 l~~~~~~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~-i~~~g~~~~~~~~~~~~~ 96 (224)
T cd03220 23 LGILGRKGEVGEF-----WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT-VTVRGRVSSLLGLGGGFN 96 (224)
T ss_pred hhhhhhhhhcCCe-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEchhhcccccCC
Confidence 5678889999886 789887 9999999999999999999999999999988663 3221100 000000
Q ss_pred ---------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH
Q 038101 237 ---------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM 286 (660)
Q Consensus 237 ---------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~ 286 (660)
.... ..++.. .+.+..+|+|||||++||++++++|++||+|||+++||+.
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~ 176 (224)
T cd03220 97 PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176 (224)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 0000 012221 2456789999999999999999999999999999999999
Q ss_pred HHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 287 AASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 287 a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++..+ .+.|.|||++||+.+++..+||+++.+.+|++..
T Consensus 177 ~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 87664 3458999999999999999999999999998754
No 175
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.92 E-value=1.8e-24 Score=216.57 Aligned_cols=152 Identities=16% Similarity=0.310 Sum_probs=120.5
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
+..++++||++.|++. .+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 5 ~~~i~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA-----KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred CceEEEeccEEeeCCc-----eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 3468899999999865 688888 8999999999999999999999999999877551
Q ss_pred --eEEEEcCCCccccC------------CCCC-----------CCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 --RVMIVDTSSEIGGN------------GDIP-----------HPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~------------~~ip-----------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
.++|+.+...+... .... ..++.. .+.+..+|+||+||++||++++.+|++|
T Consensus 80 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred HhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 35666654322100 0000 113321 2456789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 275 VIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
|+|||+++||+.++..+ . +.|.+||++||+.+++. .||+++.+.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 99999999999998765 2 24899999999999986 699999885
No 176
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=2.1e-24 Score=240.07 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=128.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCC----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN--DYK---------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--~~G---------------- 221 (660)
..++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.+ +.|
T Consensus 4 ~~l~~~nl~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 4 YLLEMKNITKTFGGV-----KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred ceEEEeeeEEEeCCe-----EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 468999999999865 688888 899999999999999999999999999986 333
Q ss_pred ---CeEEEEcCCCcccc---------CC------C-CC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHH
Q 038101 222 ---KRVMIVDTSSEIGG---------NG------D-IP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 ---krV~~Vdq~~eIa~---------~~------~-ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL 267 (660)
+.++|+.|...+.. .. . +. ..++.. .+.+..||+|||||++||+|+
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al 158 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKAL 158 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 23777776532210 00 0 00 012221 245678999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+++|++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~ 224 (506)
T PRK13549 159 NKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT 224 (506)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee
Confidence 999999999999999999998775 35689999999999999999999999999998653
No 177
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=4.9e-24 Score=210.11 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=124.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..+++++++++|+... ..+++++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 5 ~~l~~~~l~~~~~~~~---~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 81 (207)
T cd03369 5 GEIEVENLSVRYAPDL---PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81 (207)
T ss_pred CeEEEEEEEEEeCCCC---cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHH
Confidence 3478999999997521 1478887 899999999999999999999999999988754
Q ss_pred CeEEEEcCCCccccC---------CCCCCC----CCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHH
Q 038101 222 KRVMIVDTSSEIGGN---------GDIPHP----GIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAA 288 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---------~~ip~~----~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~ 288 (660)
..|+|+++...+... ..+... .+...+....+|+||+||++||++++.+|++||+|||+++||+.++
T Consensus 82 ~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 82 SSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred hhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 246777665433210 000000 0011235678999999999999999999999999999999999998
Q ss_pred HHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 289 STIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 289 ~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
..+. ..|.|+|++||+.+++.. ||+++.+..|++..
T Consensus 162 ~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 162 ALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEe
Confidence 7651 348999999999998865 99999999998754
No 178
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.92 E-value=2.1e-24 Score=216.68 Aligned_cols=159 Identities=16% Similarity=0.252 Sum_probs=122.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------e
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------R 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------r 223 (660)
++++|++++|++. +...+++++ +.+|++++|+||||||||||+++|+|++.++.|. .
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 3689999999742 011478876 8999999999999999999999999999887552 3
Q ss_pred EEEEcCCCccccC-------CCCCC------------CCC-----------C--ccccCCCCCHHHHHHHHHHHHHccCC
Q 038101 224 VMIVDTSSEIGGN-------GDIPH------------PGI-----------G--NARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~~-------~~ip~------------~~L-----------g--~~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+++...+... ..... .++ . ..+....||+||+||++||++++.+|
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 79 IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 6666655322100 00000 011 0 01234689999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|||+++||+.++..+. ..|.+||++||+.+++. +||+++.+..|++...
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~ 218 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQ 218 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEe
Confidence 999999999999999987751 26899999999999987 7999999999998653
No 179
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.2e-24 Score=216.26 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=124.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.+. .|
T Consensus 4 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYGDK-----QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEECCE-----EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 46899999999865 688887 8999999999999999999999999998642 22
Q ss_pred ------CeEEEEcCCCccccC-------------CCCCC--------------CCCC------ccccCCCCCHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN-------------GDIPH--------------PGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~-------------~~ip~--------------~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+... ..... .++. ..+.+..+|+||+||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 136666665322110 00000 0110 02345779999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...+.|+|++||+.+++..+||+++.+..|++...
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998775 23579999999999999999999999999998764
No 180
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=241.27 Aligned_cols=155 Identities=17% Similarity=0.242 Sum_probs=127.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCccc
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSEIG 234 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~eIa 234 (660)
++++||+++|++. .+|+++ |++|++++|+||||||||||||+|+|++.|+.| .+|+|+.+...+.
T Consensus 2 l~i~~ls~~~~~~-----~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~ 76 (530)
T PRK15064 2 LSTANITMQFGAK-----PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAF 76 (530)
T ss_pred EEEEEEEEEeCCc-----EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcC
Confidence 6799999999865 688887 999999999999999999999999999988755 3577777653211
Q ss_pred cC---------C---------------C----------------------------------CCCCCCCc---cccCCCC
Q 038101 235 GN---------G---------------D----------------------------------IPHPGIGN---ARRMQVP 253 (660)
Q Consensus 235 ~~---------~---------------~----------------------------------ip~~~Lg~---~rrl~vL 253 (660)
.. . . +...++.. .+.+..|
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 00 0 0 00123322 1356789
Q ss_pred CHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 254 NSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 254 SgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
|+|||||++||++++.+|+|||+||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+..|++.
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 99999999999999999999999999999999998776 456999999999999999999999999999974
No 181
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.3e-24 Score=216.20 Aligned_cols=158 Identities=20% Similarity=0.248 Sum_probs=124.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++||+++|++. .+++++ +.+|++++|+|||||||||||++|+|++.+ +.|
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYGDF-----QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEECCc-----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 46899999999865 688887 899999999999999999999999998652 222
Q ss_pred ------CeEEEEcCCCccccC------------CCC-C-------------CCCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDI-P-------------HPGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~i-p-------------~~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
..++|+.+...+... .+. + ..++. ..+....+|+||+||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCI 157 (250)
T ss_pred chHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHH
Confidence 136666665322100 000 0 00111 023456799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++++|++||+|||+++||+.++..+ ...|.|||++||+.+.+..+||+++.+..|++...
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~ 226 (250)
T PRK14240 158 ARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999998765 23589999999999999999999999999998764
No 182
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.5e-24 Score=216.02 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=124.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G------------- 221 (660)
..++++||+++|++. .+++++ +.+|++++|+||||||||||+++|+|++. | +.|
T Consensus 4 ~~l~~~~l~~~~~~~-----~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 4 PILQVSDLSVYYNKK-----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred ceEEEEeeEEEECCe-----eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 467899999999865 688887 89999999999999999999999999843 4 122
Q ss_pred -------CeEEEEcCCCccccC------------CCCCC--------------CCCC------ccccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDIPH--------------PGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~ip~--------------~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+... ..... .++. ..+....+|+|||||++
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 136677665432110 00000 1111 12355679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+|++.+|++||+|||+++||+.++..+ ...+.|||++||+.+.+..+||+++.+..|++...
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998776 12478999999999998899999999999998654
No 183
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.1e-24 Score=219.27 Aligned_cols=153 Identities=16% Similarity=0.217 Sum_probs=120.5
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G------------- 221 (660)
..++++||+++|+.. .+|+++ |.+|++++|+|||||||||||++|+|++. ++.|
T Consensus 12 ~~l~i~nl~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYGTF-----EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEECCE-----EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 358899999999865 688888 89999999999999999999999999976 3322
Q ss_pred -------CeEEEEcCCCcccc------------CCCCC------------CCCCC------ccccCCCCCHHHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGG------------NGDIP------------HPGIG------NARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~------------~~~ip------------~~~Lg------~~rrl~vLSgG~qqrv~IA 264 (660)
+.|+|+++...+.. ...+. ..++. ..+.+..||+|||||++||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la 166 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA 166 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence 13667666532210 00010 01111 1234567999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
+|++.+|++||+|||+++||+.++..+ ...|.+||++||+.+++..+||+++.+..
T Consensus 167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999997775 23478999999999999999999999996
No 184
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.92 E-value=3.6e-24 Score=215.92 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=124.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV~ 225 (660)
+++++++++|+.. .+++++ +.+|++++|+||||||||||+++|+|++.+..| +.++
T Consensus 1 i~i~~l~~~~~~~-----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF-----QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe-----eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEE
Confidence 3689999999865 688887 999999999999999999999999999987655 2356
Q ss_pred EEcCCCccc-cC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIG-GN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa-~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
|+++...+. .. .... ..++.. .+....+|+||+||++|+++++.+|+++|+|
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 666543221 00 0000 012211 1345679999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 278 EIGTKLEAMAASTI-------AQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+++||+.+...+ ++. |.|||++||+.+++..+||+++.+..|++...
T Consensus 156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~ 212 (237)
T TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQI 212 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 99999999998775 233 89999999999999999999999999998664
No 185
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.92 E-value=2.2e-24 Score=211.26 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=127.5
Q ss_pred EEEEeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEEEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------RVMIV 227 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------rV~~V 227 (660)
+.++++++.|+.. .+--|+ +..|++++|+||+|+||||||+.|||++.|..|. -|.++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 4578899999876 555566 9999999999999999999999999999998652 24444
Q ss_pred cCCCcccc---------CCCCCCC-----------------CCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 228 DTSSEIGG---------NGDIPHP-----------------GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 228 dq~~eIa~---------~~~ip~~-----------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
+|.+.+.. .+.-|.. |+.. .|....||||||||+++||+++.+-.|++||||
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEP 156 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEP 156 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCc
Confidence 44444321 1111211 2221 245678999999999999999999999999999
Q ss_pred CCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 280 GTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 280 gsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+++|||.-+.++ .+++.|++++||..+.+..++++++++.+|+|.+.+
T Consensus 157 FsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g 212 (231)
T COG3840 157 FSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQG 212 (231)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeec
Confidence 999999988776 578999999999999999999999999999997754
No 186
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-24 Score=217.61 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=122.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++|++++|+.. .+|+++ +.+|++++|+|||||||||||++|+|++.+ +.|
T Consensus 4 ~l~i~~v~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYGSF-----HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEECCE-----eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 57899999999865 688887 899999999999999999999999999863 233
Q ss_pred ------CeEEEEcCCCcccc-------------CCCC-CC-------------CCCC------ccccCCCCCHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGG-------------NGDI-PH-------------PGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~-------------~~~i-p~-------------~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
+.++|+.+...+.. .... +. .++. ..+.+..||+||+||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLC 158 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 12556555432110 0000 00 1221 12345679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEE------cCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEML------IGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~------~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+. .|++...
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 159 IARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 99999999999999999999999987775 1347899999999999999999999997 6887653
No 187
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.6e-24 Score=213.46 Aligned_cols=157 Identities=16% Similarity=0.263 Sum_probs=121.2
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------e
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------R 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------r 223 (660)
++++|++++|+... ..+++++ +.+|++++|+||||||||||+++|+|++.++.|. .
T Consensus 1 i~~~~l~~~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 1 VEFKNVTFRYPGDG---PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred CEEEEEEEEeCCCC---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 36899999996420 1477777 8999999999999999999999999999887552 2
Q ss_pred EEEEcCCCccccC----------CCCCC---------C-----------CCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 224 VMIVDTSSEIGGN----------GDIPH---------P-----------GIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~~----------~~ip~---------~-----------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+++...+... ..... . ++.. .++...+|+||+||++||++++++|
T Consensus 78 i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 78 IGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 5666554322100 00000 0 1110 1345689999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++||+|||+++||+.....+ ..+|.+||++||+.+++.. ||+++.+.+|++..
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~ 216 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE 216 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee
Confidence 99999999999999998765 2358999999999999876 99999999999864
No 188
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.92 E-value=4.9e-24 Score=215.04 Aligned_cols=157 Identities=16% Similarity=0.151 Sum_probs=120.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCC------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL--ANDYK------------------ 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~G------------------ 221 (660)
++++||+++|++. .+++++ +.+|++++|+||||||||||+++|+|++ .++.|
T Consensus 2 i~~~nl~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (248)
T PRK09580 2 LSIKDLHVSVEDK-----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRA 76 (248)
T ss_pred eEEEEEEEEeCCe-----eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHh
Confidence 6799999999865 688887 8999999999999999999999999995 45543
Q ss_pred -CeEEEEcCCCcccc-----------CCC---------CCC-------------CCCCc---cccC-CCCCHHHHHHHHH
Q 038101 222 -KRVMIVDTSSEIGG-----------NGD---------IPH-------------PGIGN---ARRM-QVPNSEMQHKVLI 263 (660)
Q Consensus 222 -krV~~Vdq~~eIa~-----------~~~---------ip~-------------~~Lg~---~rrl-~vLSgG~qqrv~I 263 (660)
..++|+.+...+.. ... +.. .++.. .+.. ..+|+|||||++|
T Consensus 77 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 77 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred hcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 12556555421100 000 000 01100 1122 2699999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI-MNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i-~dril~l~~G~I~~V 326 (660)
|+|++.+|++||+||||++||+.++..+ ++.|.|||++||+..++..+ +|+++.+..|++...
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999987765 34589999999999998887 899999999998653
No 189
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=2e-24 Score=217.81 Aligned_cols=143 Identities=22% Similarity=0.316 Sum_probs=111.8
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eEEEEc-CCCcccc-C----
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RVMIVD-TSSEIGG-N---- 236 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV~~Vd-q~~eIa~-~---- 236 (660)
.+|+++ +++|++++|+|||||||||||++|+|++.|+.|. .++|+. +...+.. .
T Consensus 35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 577777 8999999999999999999999999999887552 355554 3221110 0
Q ss_pred --------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--
Q 038101 237 --------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-- 291 (660)
Q Consensus 237 --------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-- 291 (660)
..+. ..++.. .+.+..+|+|||||++||++++++|++||+|||+++||+.++..+
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 194 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRN 194 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 0000 012221 235567999999999999999999999999999999999998776
Q ss_pred -----Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 292 -----AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 292 -----~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++ .|.|||++||+.+++..+||+++.+..|++..
T Consensus 195 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 195 FLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 22 48999999999999999999999999998753
No 190
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.8e-24 Score=214.31 Aligned_cols=156 Identities=19% Similarity=0.290 Sum_probs=120.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------e
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------R 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------r 223 (660)
+++++++++|++. ..+++++ +.+|++++|+||||||||||+++|+|++.++.|. .
T Consensus 1 l~~~~l~~~~~~~----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 1 IEFENVTFAYDPG----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred CEEEEEEEEeCCC----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 3688999999632 1578877 8999999999999999999999999999887552 2
Q ss_pred EEEEcCCCccccC--------C--CCCC---------CCC-----------Cc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 224 VMIVDTSSEIGGN--------G--DIPH---------PGI-----------GN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~~--------~--~ip~---------~~L-----------g~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+++...+... . .... .++ .. .++...||+|||||++||++++++|
T Consensus 77 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 5666655332110 0 0000 011 00 1234689999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++||+|||+++||+.....+ ...|.+||++||+.+++.. ||+++.+..|++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~ 215 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVE 215 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEe
Confidence 99999999999999997765 1238999999999999865 99999999999865
No 191
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=214.71 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=124.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G-------------- 221 (660)
.++++|++++|+.. .+|+++ +.+|++++|+|+||||||||+++|+|++. +..|
T Consensus 4 ~l~~~~l~~~~~~~-----~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYGNY-----EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEECCe-----eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 47899999999865 688877 89999999999999999999999999986 1222
Q ss_pred ------CeEEEEcCCCccccC------------CCCC--------------CCCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDIP--------------HPGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~ip--------------~~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
+.++|+.+...+... .... ..++. ..+....+|+|||||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred hHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 135666655322100 0000 01221 123556799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 227 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe
Confidence 9999999999999999999999998775 23479999999999999999999999999998654
No 192
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.4e-24 Score=217.39 Aligned_cols=160 Identities=17% Similarity=0.217 Sum_probs=126.4
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
+.+.+++++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 9 ~~i~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 9 DVFNISRLYLYINDK-----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred hheeeeeEEEecCCc-----eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence 457899999999886 788888 899999999999999999999999999987643
Q ss_pred ------CeEEEEcCCCccc-cC------------CCC-CC-------------CCCCc------cccCCCCCHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIG-GN------------GDI-PH-------------PGIGN------ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 ------krV~~Vdq~~eIa-~~------------~~i-p~-------------~~Lg~------~rrl~vLSgG~qqrv~ 262 (660)
..++|+++...+. .. .+. +. .++.. .+....+|+|||||++
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 163 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT 163 (257)
T ss_pred CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH
Confidence 1245555543221 00 000 10 12321 1344679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||++++.+|++||+|||+++||+.+...+ ...+.|||++||+.+++..+||+++.+..|++...+
T Consensus 164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999997765 234799999999999998999999999999986543
No 193
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=3.7e-24 Score=212.77 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=121.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------eE
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------RV 224 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------rV 224 (660)
..++++|++++|+.. .+++++ +++|++++|+||||||||||+++|+|++.++.|. .+
T Consensus 10 ~~l~~~~l~~~~~~~-----~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 10 PLLAAHALAFSRNEE-----PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred ceEEEeeEEEecCCc-----eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 458899999999865 688887 9999999999999999999999999999887552 25
Q ss_pred EEEcCCCccccC-------------CCCC----------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 225 MIVDTSSEIGGN-------------GDIP----------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip----------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
+|+.+...+... .... ..++.. .+.+..+|+|||||++||++++.+|++||+|||
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 666654322110 0000 012221 245578999999999999999999999999999
Q ss_pred CCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 280 GTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 280 gsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
+++||+.++..+ .+.|.++|++||+.+++..+|++++.+.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 165 YANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEe
Confidence 999999997765 3568999999999999999999998764
No 194
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=4.2e-24 Score=215.48 Aligned_cols=160 Identities=16% Similarity=0.235 Sum_probs=131.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..+++++|+..||+. .+|+++ +..|++++|+||||+|||||||+|+|+..+..|
T Consensus 2 ~mL~v~~l~~~YG~~-----~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 2 PMLEVENLSAGYGKI-----QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76 (237)
T ss_pred CceeEEeEeecccce-----eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHH
Confidence 467899999999987 899988 899999999999999999999999999998643
Q ss_pred -CeEEEEcCCCccccC---------CCCCCC-----------------CCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGGN---------GDIPHP-----------------GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~---------~~ip~~-----------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..++||++..+++.. +..... .+.. .++-..||||+||.++|+|||+.+|+
T Consensus 77 r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred hCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 246777776655311 101000 0111 14557899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 273 VIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|+||||+.||-|.-..++ + +.|+||+++-++...+..++|+.++|..|++..-+
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEec
Confidence 9999999999999887665 3 44899999999999999999999999999987644
No 195
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.3e-24 Score=221.82 Aligned_cols=163 Identities=19% Similarity=0.247 Sum_probs=126.5
Q ss_pred ceEEEEeEEEEECcccc-ccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 163 RKGAIIGLTCRVGRAVS-GSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~-G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
..++++||+++|+..-. +...+|+++ |.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 46889999999974210 112588888 8999999999999999999999999999987541
Q ss_pred ---eEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 ---RVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 ---rV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++... +... .+++ ..++.. .+.+..||+|||||++||++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 3566665431 1100 0011 012222 245678999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+|||+++||+.++..+ .+ .|.|||++||+.+++.. ||+++.+..|++...
T Consensus 163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEe
Confidence 999999999999999998776 23 49999999999999876 999999999998654
No 196
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.91 E-value=4.2e-24 Score=238.85 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=128.7
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------- 221 (660)
+.++++|++++|++. .+...+|+++ +.+|++++|+||||||||||||+|+|++.+ +.|
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQ-QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCC-CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 468899999999641 0012588888 899999999999999999999999999975 222
Q ss_pred ---------CeEEEEcCCCc--ccc--------------CCCCCC-------------CCCCc-----cccCCCCCHHHH
Q 038101 222 ---------KRVMIVDTSSE--IGG--------------NGDIPH-------------PGIGN-----ARRMQVPNSEMQ 258 (660)
Q Consensus 222 ---------krV~~Vdq~~e--Ia~--------------~~~ip~-------------~~Lg~-----~rrl~vLSgG~q 258 (660)
++++|+.|... +.. ..+++. .++.. .+++..||+|||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 24788877642 110 001111 24432 346788999999
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 259 HKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 259 qrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++||+|++++|++||+||||++||+.++..+ ++ .|.|||++||+.+.+..+||+++.+.+|++...
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~ 238 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQ 238 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999998775 23 489999999999999999999999999998654
No 197
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=4.7e-24 Score=214.81 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=124.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV~ 225 (660)
+++++++++|++ .+++++ +.+|++++|+||||||||||+++|+|++.++.| +.++
T Consensus 1 l~~~~l~~~~~~------~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE------FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC------ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEE
Confidence 358899999974 357777 899999999999999999999999999998755 2466
Q ss_pred EEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 226 IVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 226 ~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
++++...+... ..+. ..++.. .+++..+|+||+||++||++++.+|++|++|
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 154 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD 154 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 76665432110 0000 012221 2456789999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+++||+.++..+ .. .|.|+|++||+..++..+||+++.+..|++...
T Consensus 155 EPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~ 211 (235)
T cd03299 155 EPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999998775 22 389999999999999889999999999998653
No 198
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=4.8e-24 Score=237.17 Aligned_cols=166 Identities=19% Similarity=0.298 Sum_probs=130.6
Q ss_pred cCceEEEEeEEEEECcc------ccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC
Q 038101 161 RNRKGAIIGLTCRVGRA------VSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS 231 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~------v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~ 231 (660)
..+.++++||+++|+-. ..+...+++++ +.+||+++|+|++|||||||.|+|+|++.|+.| .|.+.....
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG-SIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEeCccc
Confidence 34567899999999841 12345778888 899999999999999999999999999999755 344433220
Q ss_pred -----c-------ccc------CCCCCC--------------------------------CCCCc---cccCCCCCHHHH
Q 038101 232 -----E-------IGG------NGDIPH--------------------------------PGIGN---ARRMQVPNSEMQ 258 (660)
Q Consensus 232 -----e-------Ia~------~~~ip~--------------------------------~~Lg~---~rrl~vLSgG~q 258 (660)
+ +.. ...-|+ .++.. .++...+|||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 0 000 000011 02222 267789999999
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 259 HKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 259 qrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||++||+||+.+|++||+|||++.||+..+..+ .+.|.|+|++|||+..+..+||++++|..|+|+..+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999987765 467999999999999999999999999999998754
No 199
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.3e-24 Score=215.04 Aligned_cols=158 Identities=16% Similarity=0.247 Sum_probs=125.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCC----------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA---NDYK---------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~---p~~G---------------- 221 (660)
.++++|++++|++. .+|+++ +.+|++++|+||||||||||+++|+|++. ++.|
T Consensus 2 ~~~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYGKK-----QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEECCE-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 35799999999865 688887 89999999999999999999999999974 3333
Q ss_pred --CeEEEEcCCCccccC------------CCC--C-------------CCCCCc------cccCCCCCHHHHHHHHHHHH
Q 038101 222 --KRVMIVDTSSEIGGN------------GDI--P-------------HPGIGN------ARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~------------~~i--p-------------~~~Lg~------~rrl~vLSgG~qqrv~IA~a 266 (660)
+.|+|+++...+... ... + ..++.. .+....+|+||+||++||++
T Consensus 77 ~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 156 (246)
T PRK14269 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARA 156 (246)
T ss_pred HhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHH
Confidence 246777766432110 000 0 012311 13456799999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++++|++||+|||+++||+.++..+ ...|.|||++||+.+++..+||+++.+..|++...
T Consensus 157 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 222 (246)
T PRK14269 157 LAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF 222 (246)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE
Confidence 9999999999999999999987775 12589999999999999999999999999998764
No 200
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.1e-24 Score=209.87 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=118.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCCC----------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA---NDYKK---------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~---p~~Gk---------------- 222 (660)
+.++||++.|... .+...+++++ +.+|++++|+||||||||||+++|+|++. ++.|.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKG-RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEEEccEEEeccC-CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5689999999753 1234688887 89999999999999999999999999998 55442
Q ss_pred -eEEEEcCCCccccCCCCCC-----CCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-----
Q 038101 223 -RVMIVDTSSEIGGNGDIPH-----PGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----- 291 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~~~ip~-----~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----- 291 (660)
.++|+++...+.....+.. ......+....+|+||+||++||+|++++|++||+|||+++||+.++..+
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR 162 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 2344443321110000000 00112245678999999999999999999999999999999999998775
Q ss_pred --Hhc-CCEEEEE-EcChhHHHHhcCcEEEEEcCeEEE
Q 038101 292 --AQR-GIQLVAT-AHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 292 --~~~-GvtVI~T-tH~~~l~~~i~dril~l~~G~I~~ 325 (660)
.+. +.++|++ +|..+.+..+||+++.+..|++..
T Consensus 163 ~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 233 6666655 556677788999999999999753
No 201
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.91 E-value=4.5e-24 Score=212.50 Aligned_cols=154 Identities=18% Similarity=0.253 Sum_probs=117.1
Q ss_pred EEEEeEEEEECccccc--cccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 165 GAIIGLTCRVGRAVSG--SANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G--~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
++++||+++|+....+ ...+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6799999999632111 12578887 8999999999999999999999999999876442
Q ss_pred ---------eEEEEcCCCccccC-------------CCCC-------------CCCCCc---cccCCCCCHHHHHHHHHH
Q 038101 223 ---------RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN---ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 223 ---------rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~IA 264 (660)
.++|+++...+... .+.. ..++.. .+.+..+|+||+||++||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 24455443321100 0010 013322 135678999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
++++.+|++||+|||+++||+.++..+ .+.|.|||++||+.+++..+||+++.+
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999998776 346999999999999998899998764
No 202
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=7.5e-24 Score=211.14 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=122.0
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
.+.+++++++++|++.. ...+++++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 9 ~~~l~~~~l~~~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 9 KGIVKFQNVTFAYPTRP--DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CceEEEEEEEEEeCCCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34678999999997420 11478887 899999999999999999999999999988755
Q ss_pred -CeEEEEcCCCcccc----------CCCCC------------------CC--CCCc--cccCCCCCHHHHHHHHHHHHHc
Q 038101 222 -KRVMIVDTSSEIGG----------NGDIP------------------HP--GIGN--ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 -krV~~Vdq~~eIa~----------~~~ip------------------~~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.++|+++...+.. ..... .. ++.. .++...||+||+||++||++++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 23666666542210 00000 01 2221 2346779999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
.+|++||+|||+++||+.++..+ ...+.|+|++||+.+++.. ||+++.+..|+
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGR 225 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCc
Confidence 99999999999999999998776 2347899999999999865 99999998876
No 203
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.5e-24 Score=237.11 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=128.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++||+++|++. .+|+++ +.+|++++|+||||||||||||+|+|++.|+.|
T Consensus 4 ~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 78 (501)
T PRK11288 4 YLSFDGIGKTFPGV-----KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALA 78 (501)
T ss_pred eEEEeeeEEEECCE-----EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHh
Confidence 57899999999865 688888 899999999999999999999999999987644
Q ss_pred CeEEEEcCCCccccC---------C------C-CC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 KRVMIVDTSSEIGGN---------G------D-IP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---------~------~-ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+.|+|+++...+... . . +. ..++.. .+++..||+|||||++||++++.+
T Consensus 79 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 79 AGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 236777665322100 0 0 00 012221 245678999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|||+||||++||+.++..+ .+.|.+||++||+.+++..+||+++.+..|++...
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999998775 35689999999999999999999999999998643
No 204
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.91 E-value=2.2e-24 Score=211.59 Aligned_cols=146 Identities=17% Similarity=0.294 Sum_probs=112.1
Q ss_pred EEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------------
Q 038101 167 IIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------------- 222 (660)
Q Consensus 167 I~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------------- 222 (660)
++||++.|++. .+++++ +.+|++++|+||||||||||+++|+|++.|+.|+
T Consensus 1 i~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 75 (206)
T TIGR03608 1 LKNISKKFGDK-----IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRR 75 (206)
T ss_pred CcceEEEECCE-----EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHH
Confidence 46889999765 688887 8999999999999999999999999999887552
Q ss_pred -eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 -RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.++|+.+...+... .+.. ..++.. .+.+..+|+||+||++||++++.+|++
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l 155 (206)
T TIGR03608 76 EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL 155 (206)
T ss_pred hCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 24444443221100 0000 012221 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
||+|||+++||+.++..+ .+.|.++|++||+..+.. +||+++.+
T Consensus 156 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l 206 (206)
T TIGR03608 156 ILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL 206 (206)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence 999999999999997775 345899999999998764 79988753
No 205
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=4.9e-24 Score=209.67 Aligned_cols=157 Identities=11% Similarity=0.134 Sum_probs=119.9
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCccccC
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGGN 236 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~~ 236 (660)
++++||+++|+........+++++ +++|++++|+||||||||||+++|+|++.++.|. +|+|+.+...+...
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 368999999975300001478887 9999999999999999999999999999988763 37888776432110
Q ss_pred ---------CCCCC---------CCC-----------C--ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccH
Q 038101 237 ---------GDIPH---------PGI-----------G--NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEA 285 (660)
Q Consensus 237 ---------~~ip~---------~~L-----------g--~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~ 285 (660)
..+.. .++ . ..++...+|+|||||++||++++.+|++||+|||+++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 00000 011 0 0123467999999999999999999999999999999999
Q ss_pred HHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 286 MAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 286 ~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
.+.+.+ .+.|.|||++||+.+.+.. ||+++.+..|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 986543 2347999999999998887 99999998774
No 206
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=218.87 Aligned_cols=159 Identities=16% Similarity=0.222 Sum_probs=124.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------- 221 (660)
..++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.+ ..|
T Consensus 19 ~~l~~~nl~~~~~~~-----~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 19 SVFEVEGVKVFYGGF-----LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred ceEEEeeEEEEeCCe-----EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 368899999999865 688887 899999999999999999999999999752 222
Q ss_pred -------CeEEEEcCCCccccC------------CCCC------------CCCC----Cc--cccCCCCCHHHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDIP------------HPGI----GN--ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~ip------------~~~L----g~--~rrl~vLSgG~qqrv~IA 264 (660)
..++|+++...+... .... ..++ .. .+....+|+||+||++||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 246677665332110 0000 0011 11 134567999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEE---------cCeEEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEML---------IGGVQNV 326 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~---------~G~I~~V 326 (660)
+|++.+|++||+|||+++||+.++..+ ...+.+||++||+.+++..+||+++.+. .|++...
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 999999999999999999999998776 2347899999999999999999999997 6877553
No 207
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7e-24 Score=214.56 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=124.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.+. .|
T Consensus 3 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYGEN-----QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEECCe-----eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 57899999999865 688887 8999999999999999999999999998752 22
Q ss_pred -----CeEEEEcCCCccccC------------CCCC-C-------------CCCC----c--cccCCCCCHHHHHHHHHH
Q 038101 222 -----KRVMIVDTSSEIGGN------------GDIP-H-------------PGIG----N--ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 222 -----krV~~Vdq~~eIa~~------------~~ip-~-------------~~Lg----~--~rrl~vLSgG~qqrv~IA 264 (660)
+.++|+++...+... .... . .++. . .+....+|+|||||++||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred hHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 135666655322100 0010 0 0111 0 134567999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++++.+|++||+|||+++||+.++..+ ..++.|||++||+.+++..+||+++.+..|++...
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~ 225 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEH 225 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999998775 23468999999999999999999999999998653
No 208
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.91 E-value=4.4e-24 Score=238.00 Aligned_cols=156 Identities=15% Similarity=0.257 Sum_probs=123.1
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCC-----------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL--ANDYKK----------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~Gk----------------- 222 (660)
++++||+++|++. .+|+++ +.+|++++|+||||||||||||+|+|++ .|+.|.
T Consensus 1 l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~ 75 (520)
T TIGR03269 1 IEVKNLTKKFDGK-----EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75 (520)
T ss_pred CEEEEEEEEECCe-----EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccc
Confidence 4689999999865 688887 8999999999999999999999999996 465442
Q ss_pred ----------------------------------eEEEEcCC-Ccc-ccC------------CCCC-------------C
Q 038101 223 ----------------------------------RVMIVDTS-SEI-GGN------------GDIP-------------H 241 (660)
Q Consensus 223 ----------------------------------rV~~Vdq~-~eI-a~~------------~~ip-------------~ 241 (660)
.++++.+. ..+ ... .+++ .
T Consensus 76 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEM 155 (520)
T ss_pred cccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 24455443 111 000 0011 0
Q ss_pred CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHh
Q 038101 242 PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLI 311 (660)
Q Consensus 242 ~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i 311 (660)
.++.. .+.+..||+|||||++||+|++++|++|||||||++||+.++..+ .+.|.|||++||+.+.+..+
T Consensus 156 ~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 235 (520)
T TIGR03269 156 VQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDL 235 (520)
T ss_pred cCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHh
Confidence 12221 245788999999999999999999999999999999999998775 23589999999999999999
Q ss_pred cCcEEEEEcCeEEE
Q 038101 312 MNPSLEMLIGGVQN 325 (660)
Q Consensus 312 ~dril~l~~G~I~~ 325 (660)
||+++.+..|++..
T Consensus 236 ~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 236 SDKAIWLENGEIKE 249 (520)
T ss_pred cCEEEEEeCCEEee
Confidence 99999999999865
No 209
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.91 E-value=1.1e-23 Score=216.57 Aligned_cols=163 Identities=15% Similarity=0.255 Sum_probs=125.3
Q ss_pred eEEEEeEEEEECcc-cc---ccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------
Q 038101 164 KGAIIGLTCRVGRA-VS---GSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------- 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~-v~---G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------- 222 (660)
.++++||+++|+.. .. +...+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 47899999999730 00 012688888 8999999999999999999999999999887541
Q ss_pred -------eEEEEcCCCc--cccC--------------CCCC-------------CCCCCc---cccCCCCCHHHHHHHHH
Q 038101 223 -------RVMIVDTSSE--IGGN--------------GDIP-------------HPGIGN---ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 223 -------rV~~Vdq~~e--Ia~~--------------~~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~I 263 (660)
.++|+++... +... ..+. ..++.. .+....+|+||+||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 3666665531 1100 0000 013321 24567799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++++|++||+|||+++||+.++..+ ++ .|.|+|++||+.+++..+||+++.+..|++...
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999876654 33 489999999999999999999999999998654
No 210
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.91 E-value=4.6e-24 Score=210.16 Aligned_cols=149 Identities=21% Similarity=0.242 Sum_probs=116.4
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
+++++|+++|++. .+++++ +.+|++++|+|+||||||||+++|+|++.++.|. .+
T Consensus 1 l~i~~l~~~~~~~-----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (201)
T cd03231 1 LEADELTCERDGR-----ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75 (201)
T ss_pred CEEEEEEEEeCCc-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhhe
Confidence 4689999999865 688887 8999999999999999999999999999887552 34
Q ss_pred EEEcCCCccccC---------C-CC----------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 038101 225 MIVDTSSEIGGN---------G-DI----------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 225 ~~Vdq~~eIa~~---------~-~i----------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsg 282 (660)
+|+++...+... . .. ...++.. .+.+..+|+|||||++||++++.+|++||+|||+++
T Consensus 76 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 76 LYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred EEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 555443222100 0 00 0012221 245678999999999999999999999999999999
Q ss_pred ccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 283 LEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 283 LD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
||+.++..+ .+.|.|+|++||+.......|++++.+
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999997775 345899999999988888889888765
No 211
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.91 E-value=5.8e-24 Score=211.70 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=120.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++++++.|++. .+...+++++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 2 l~~~~l~~~~~~~-~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHG-SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCC-CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 5789999999742 0112578887 899999999999999999999999999988754
Q ss_pred -CeEEEEcCCCccccC-------------C-CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 -KRVMIVDTSSEIGGN-------------G-DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------------~-~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+.|+|+++...+... . .+. ..++.. .+.+..+|+||+||++||++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 135666655322110 0 000 012221 1355779999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
++||+|||+++||+.++..+ .+ .|.+||++||+.+.. .+||+++.+..|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 99999999999999997665 22 589999999999865 58999999998864
No 212
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.91 E-value=6.9e-24 Score=210.47 Aligned_cols=157 Identities=13% Similarity=0.207 Sum_probs=122.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------Ce
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------KR 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------kr 223 (660)
++++|++++|+.. ...+++++ +.+|++++|+||||||||||+++|+|++.++.| +.
T Consensus 3 l~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 3 IEFKNVSLRYRPN---LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred EEEEEEEEecCCC---CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 6799999999742 11578887 899999999999999999999999999988755 23
Q ss_pred EEEEcCCCccccC------C---CCC---------CCCCCc-------------cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 224 VMIVDTSSEIGGN------G---DIP---------HPGIGN-------------ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 224 V~~Vdq~~eIa~~------~---~ip---------~~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
++|+++...+... . ... ..++.. .+....+|+||+||++||++++++|+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 6666665432110 0 000 001111 13457899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+||+|||+++||+.++..+ ...+.|||++||+.+++.. ||+++.+..|++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe
Confidence 9999999999999998776 2347899999999998875 99999999998754
No 213
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=213.02 Aligned_cols=158 Identities=19% Similarity=0.247 Sum_probs=124.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G-------------- 221 (660)
.++++||+++|+.. .+++++ +.+|++++|+|||||||||||++|+|++. + +.|
T Consensus 5 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 5 IITSSDVHLFYGKF-----EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred eEEEEeEEEEECCe-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 57899999999865 688887 89999999999999999999999999864 2 112
Q ss_pred ------CeEEEEcCCCccccC------------CCCCC--------------CCC----Cc--cccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDIPH--------------PGI----GN--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~ip~--------------~~L----g~--~rrl~vLSgG~qqrv~I 263 (660)
+.++|+++...+... .+... .++ .. .+.+..||+|||||++|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred cHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 246777765322100 00000 011 11 23557899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999997765 12368999999999999999999999999998654
No 214
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.6e-23 Score=214.33 Aligned_cols=157 Identities=15% Similarity=0.229 Sum_probs=122.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.++++|++++|++. .+|+++ +++|++++|+|+|||||||||++|+|++.++ .|
T Consensus 7 ~l~~~nl~~~~~~~-----~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYDTQ-----KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeCCe-----eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 47899999999865 688887 9999999999999999999999999999873 22
Q ss_pred ------CeEEEEcCCCccccC------------CCC-CC-------------CCCCc------cccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDI-PH-------------PGIGN------ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~i-p~-------------~~Lg~------~rrl~vLSgG~qqrv~I 263 (660)
+.++|+.+...+... .+. +. .++.. .+....||+||+||++|
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred chHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 124555443211000 000 10 12210 13456799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEc-----CeEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLI-----GGVQN 325 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~-----G~I~~ 325 (660)
|++++.+|++||+|||+++||+.+...+ + +.|.|||++||+.+++..+||+++.+.+ |++..
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 9999999999999999999999987665 2 2589999999999999999999999998 88754
No 215
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6e-24 Score=218.74 Aligned_cols=160 Identities=18% Similarity=0.293 Sum_probs=124.4
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 6 ~~l~~~nl~~~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 82 (271)
T PRK13632 6 VMIKVENVSFSYPNS---ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIR 82 (271)
T ss_pred eEEEEEeEEEEcCCC---CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHh
Confidence 357899999999521 11578887 899999999999999999999999999987644
Q ss_pred CeEEEEcCCC--ccccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 KRVMIVDTSS--EIGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 krV~~Vdq~~--eIa~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
+.|+|+.+.. .+... ..+. ..++.. .+.+..+|+||+||++||+|++.+|+
T Consensus 83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 83 KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 2366776653 11110 0000 012221 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.++..+ .+. |.|||++||+.+.+. .||+++.+..|++...
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~ 223 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQ 223 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEe
Confidence 9999999999999987765 233 599999999999886 7999999999998653
No 216
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=5.9e-24 Score=209.61 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=114.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
+++++++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.++.|. .+
T Consensus 2 l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~ 76 (204)
T PRK13538 2 LEARNLACERDER-----ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL 76 (204)
T ss_pred eEEEEEEEEECCE-----EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe
Confidence 6799999999865 688888 9999999999999999999999999999987652 23
Q ss_pred EEEcCCCcccc-C---------CCC-------------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 225 MIVDTSSEIGG-N---------GDI-------------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 225 ~~Vdq~~eIa~-~---------~~i-------------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
+++.+...+.. . ... ...++.. .+.+..+|+||+||++||+|++++|++||+|||
T Consensus 77 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 77 LYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred EEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44433321110 0 000 0012221 245678999999999999999999999999999
Q ss_pred CCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 280 GTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 280 gsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+++||+.++..+ ++.|.|||++||+.++++....+++.+
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999997775 345899999999999988755555443
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.3e-23 Score=216.44 Aligned_cols=160 Identities=19% Similarity=0.235 Sum_probs=125.5
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------ 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------ 221 (660)
...++++|++++|++. .+++++ +.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 23 ~~~l~~~nl~~~~~~~-----~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~ 97 (272)
T PRK14236 23 QTALEVRNLNLFYGDK-----QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK 97 (272)
T ss_pred CcEEEEEEEEEEECCe-----eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence 3468899999999865 688887 899999999999999999999999999863 323
Q ss_pred --------CeEEEEcCCCcccc------------CCCCCC--------------CCCCc------cccCCCCCHHHHHHH
Q 038101 222 --------KRVMIVDTSSEIGG------------NGDIPH--------------PGIGN------ARRMQVPNSEMQHKV 261 (660)
Q Consensus 222 --------krV~~Vdq~~eIa~------------~~~ip~--------------~~Lg~------~rrl~vLSgG~qqrv 261 (660)
..++|+.+...+.. ...... .++.. .+....+|+|||||+
T Consensus 98 ~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 98 KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 24666665432210 000000 12211 134577999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||++++.+|++||+|||+++||+.++..+ ...+.+||++||+.+++..+||+++.+.+|++...
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 248 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEY 248 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEec
Confidence 999999999999999999999999997775 12478999999999999899999999999998653
No 218
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=215.33 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=122.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 10 ~l~i~~v~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 84 (264)
T PRK14243 10 VLRTENLNVYYGSF-----LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84 (264)
T ss_pred EEEEeeeEEEECCE-----EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence 57899999999865 688887 899999999999999999999999998752 322
Q ss_pred ------CeEEEEcCCCccccC------------CCCC------------CCCCC------ccccCCCCCHHHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDIP------------HPGIG------NARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~ip------------~~~Lg------~~rrl~vLSgG~qqrv~IA~ 265 (660)
++++|+.+...+... ..+. ..++. ..+.+..+|+|||||++||+
T Consensus 85 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred ChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 135666654321100 0000 00111 11345679999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEE---------cCeEEEE
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEML---------IGGVQNV 326 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~---------~G~I~~V 326 (660)
|++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+. .|+++..
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 99999999999999999999998776 1246899999999999999999999998 6777653
No 219
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=218.86 Aligned_cols=161 Identities=14% Similarity=0.201 Sum_probs=125.3
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC-----------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK----------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G----------- 221 (660)
..+.++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++. + +.|
T Consensus 36 ~~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEF-----EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 34467899999999865 688887 89999999999999999999999999853 2 322
Q ss_pred ---------CeEEEEcCCCcccc------------CCCCCC--------------CCCC----c--cccCCCCCHHHHHH
Q 038101 222 ---------KRVMIVDTSSEIGG------------NGDIPH--------------PGIG----N--ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 ---------krV~~Vdq~~eIa~------------~~~ip~--------------~~Lg----~--~rrl~vLSgG~qqr 260 (660)
+.++|+++...+.. ...... .++. . .+....||+||+||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 24666666543210 000100 0111 1 23457899999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||++++.+|++||+|||+++||+.++..+ ...+.+||++||+.+++..+||+++.+..|++...
T Consensus 191 v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 191 LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998775 23468999999999999999999999999998653
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.91 E-value=6.7e-24 Score=235.33 Aligned_cols=157 Identities=16% Similarity=0.227 Sum_probs=126.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCC------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN--DYK------------------ 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--~~G------------------ 221 (660)
++++||+++|++. .+|+++ +.+|++++|+|||||||||||++|+|++.+ +.|
T Consensus 2 l~i~~l~~~~~~~-----~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (500)
T TIGR02633 2 LEMKGIVKTFGGV-----KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76 (500)
T ss_pred EEEEeEEEEeCCe-----EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 6799999999865 688887 899999999999999999999999999975 332
Q ss_pred -CeEEEEcCCCcccc-----------CC------CCC-------------CCCCCc---cccCCCCCHHHHHHHHHHHHH
Q 038101 222 -KRVMIVDTSSEIGG-----------NG------DIP-------------HPGIGN---ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 -krV~~Vdq~~eIa~-----------~~------~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL 267 (660)
+.++|+++...+.. .. .+. ..++.. .+.+..||+|||||++||+++
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al 156 (500)
T TIGR02633 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKAL 156 (500)
T ss_pred hCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHH
Confidence 23778777542210 00 010 013322 134678999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+++|++||+||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 157 NKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 999999999999999999997775 35699999999999999999999999999998653
No 221
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=9.5e-24 Score=218.45 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=123.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC--------CCC-----------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND--------YKK----------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~--------~Gk----------- 222 (660)
++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.++ .|.
T Consensus 2 l~~~nl~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARRHR-----AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEECCE-----eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 6799999999875 688887 8999999999999999999999999999875 331
Q ss_pred -------eEEEEcCCCcc-cc--------CCCCCC---------------------CCCCc--cccCCCCCHHHHHHHHH
Q 038101 223 -------RVMIVDTSSEI-GG--------NGDIPH---------------------PGIGN--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 223 -------rV~~Vdq~~eI-a~--------~~~ip~---------------------~~Lg~--~rrl~vLSgG~qqrv~I 263 (660)
.++|+++.... .. ....+. .++.. .+.+..||+||+||++|
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 24566554321 00 000010 01111 13557799999999999
Q ss_pred HHHHc---------cCCcEEEEeCCCCCccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVEN---------HMPQVIVIDEIGTKLEAMAASTI-------AQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~---------~~P~VLILDEPgsgLD~~a~~~i-------~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++ .+|++||+|||+++||+.++..+ .+. |.|||++||+.+++..+||+++.+..|++...
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 49999999999999999998775 233 89999999999999889999999999998654
No 222
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=215.44 Aligned_cols=159 Identities=13% Similarity=0.221 Sum_probs=125.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------- 221 (660)
..++++||+++|+.. .+|+++ +.+|++++|+|||||||||||++|+|++.+ +.|
T Consensus 19 ~~l~~~nl~~~~~~~-----~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYGKK-----EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEECCe-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 358899999999765 688888 899999999999999999999999999863 333
Q ss_pred -------CeEEEEcCCCcccc----------C--CCC-C-------------CCCCC------ccccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGG----------N--GDI-P-------------HPGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~----------~--~~i-p-------------~~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+.. . .+. . ..++. ..+....+|+||+||++
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 13667766532210 0 000 0 01221 11345679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...|.+||++||+.+++..+||+++.+..|++...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999987765 23579999999999999899999999999998764
No 223
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=234.03 Aligned_cols=157 Identities=18% Similarity=0.258 Sum_probs=129.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSE 232 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~e 232 (660)
..++++||+++|++. .+|+++ +.+|++++|+||||||||||||+|+|++.|+.| .+++|+++...
T Consensus 318 ~~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~ 392 (530)
T PRK15064 318 NALEVENLTKGFDNG-----PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392 (530)
T ss_pred ceEEEEeeEEeeCCc-----eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccc
Confidence 468999999999865 688887 999999999999999999999999999988755 35788887632
Q ss_pred --ccc-C------CCC--------------CCCCCC---ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH
Q 038101 233 --IGG-N------GDI--------------PHPGIG---NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM 286 (660)
Q Consensus 233 --Ia~-~------~~i--------------p~~~Lg---~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~ 286 (660)
+.. . ..+ ...++. ..+.+..||+|||||++||++++++|++||+||||++||+.
T Consensus 393 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 210 0 000 012332 13567889999999999999999999999999999999999
Q ss_pred HHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 287 AASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 287 a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
++..+ .+.+.|||++||+.+++..+||+++.+..|++.
T Consensus 473 ~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 473 SIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 98776 344679999999999999999999999999975
No 224
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-23 Score=213.31 Aligned_cols=158 Identities=15% Similarity=0.236 Sum_probs=123.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~G-------------- 221 (660)
.++++|++++|++. .+++++ +.+|++++|+|+||||||||+++|+|++.++ .|
T Consensus 7 ~l~~~~l~~~~~~~-----~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYNTS-----KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEECCe-----EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 47899999999865 688888 8999999999999999999999999998741 22
Q ss_pred ------CeEEEEcCCCccccC-------------CCCCC-------------CCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN-------------GDIPH-------------PGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~-------------~~ip~-------------~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
..|+|+.+...+... +.++. .++. ..+....+|+|||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred chHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 135666555322100 00010 1221 123456899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEE-----cCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEML-----IGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~-----~G~I~~V 326 (660)
|+|++.+|++||+|||+++||+.+...+ ...+.|||++||+.+++..+||+++++. .|++...
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 9999999999999999999999987765 1346999999999999999999999997 4887653
No 225
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=215.41 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=125.4
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G------------- 221 (660)
+.++++|++++|++. .+|+++ +.+|++++|+|+|||||||||++|+|++. ++.|
T Consensus 23 ~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWYGED-----HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEECCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 368899999999865 688887 89999999999999999999999999986 3433
Q ss_pred -------CeEEEEcCCCccccC------------CCCC-C-------------CC----CCc--cccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GDIP-H-------------PG----IGN--ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~ip-~-------------~~----Lg~--~rrl~vLSgG~qqrv~ 262 (660)
+.++|+++...+... .... . .+ +.. .+....+|+||+||++
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC 177 (271)
T ss_pred ccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence 136666665432100 0000 0 00 110 1345679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 247 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY 247 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998776 23479999999999999999999999999998654
No 226
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=1.4e-23 Score=212.51 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhc--cccCCCC----------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARV--LANDYKK---------------- 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~Iagl--L~p~~Gk---------------- 222 (660)
.+++++|+++|++. .+|+++ +.+|++++|+|+||||||||+++|+|+ +.++.|.
T Consensus 7 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 7 ILEIKNLHASVNEN-----EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81 (252)
T ss_pred eEEEEeEEEEeCCE-----EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence 48899999999864 688887 899999999999999999999999998 3555431
Q ss_pred ---eEEEEcCCCccc-c----------CC------CCC----------------CCCCCc---cccCC-CCCHHHHHHHH
Q 038101 223 ---RVMIVDTSSEIG-G----------NG------DIP----------------HPGIGN---ARRMQ-VPNSEMQHKVL 262 (660)
Q Consensus 223 ---rV~~Vdq~~eIa-~----------~~------~ip----------------~~~Lg~---~rrl~-vLSgG~qqrv~ 262 (660)
.++++.+...+. . .. ... ..++.. .+.+. .+|+||+||++
T Consensus 82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 144554432110 0 00 000 012221 12344 49999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI-MNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i-~dril~l~~G~I~~V 326 (660)
||++++++|++||+||||++||+.++..+ .+.|.|||++||+.+++..+ ||+++.+..|++...
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999998765 34589999999999998876 899999999998654
No 227
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=239.40 Aligned_cols=164 Identities=17% Similarity=0.263 Sum_probs=129.1
Q ss_pred ceEEEEeEEEEECcc--c----cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------
Q 038101 163 RKGAIIGLTCRVGRA--V----SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~--v----~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------ 221 (660)
+.++++||++.|+.. . .+...+|+++ |.+|++++|+|+||||||||+++|+|++.++.|
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 468999999999621 0 0112578888 899999999999999999999999999987633
Q ss_pred ---------CeEEEEcCCCc--cc-c------------CCCC-C-------------CCCCC-c--cccCCCCCHHHHHH
Q 038101 222 ---------KRVMIVDTSSE--IG-G------------NGDI-P-------------HPGIG-N--ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 ---------krV~~Vdq~~e--Ia-~------------~~~i-p-------------~~~Lg-~--~rrl~vLSgG~qqr 260 (660)
++|+|++|... +. . ..+. . ..++. . .+++..||+|||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 14777777531 11 0 0011 0 12442 1 35678999999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|++.+|++||+||||++||+..+..+ ++ .|.+||++||+.+++..+||++++|..|++...
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999997765 23 489999999999999999999999999998653
No 228
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=241.90 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=127.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++||+++|+.. .+...+++++ +.+|++++|+||||||||||+|+|+|++.++.|.
T Consensus 11 ~~l~v~~l~~~y~~~-~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 11 DVLAVENLNIAFMQE-QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred ceEEEeceEEEecCC-CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 468899999999642 1112588888 8999999999999999999999999999875331
Q ss_pred ---------------eEEEEcCCCc--c-ccC-------------CCCC-------------CCCCCc-----cccCCCC
Q 038101 223 ---------------RVMIVDTSSE--I-GGN-------------GDIP-------------HPGIGN-----ARRMQVP 253 (660)
Q Consensus 223 ---------------rV~~Vdq~~e--I-a~~-------------~~ip-------------~~~Lg~-----~rrl~vL 253 (660)
+|+++.|... + ... .+++ ..++.. .+++..|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 3566666421 1 000 0111 124421 2467889
Q ss_pred CHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 254 NSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 254 SgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|+|||||++||+|++.+|+|||+||||++||+..+..+ . +.|.+||++||+.+++..+||++++|..|++..
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 99999999999999999999999999999999997665 2 349999999999999999999999999999864
No 229
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.2e-23 Score=215.64 Aligned_cols=160 Identities=18% Similarity=0.233 Sum_probs=125.7
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------ 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------ 221 (660)
.+.+.++||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.| +.|
T Consensus 19 ~~~l~i~nl~~~~~~~-----~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 93 (276)
T PRK14271 19 APAMAAVNLTLGFAGK-----TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93 (276)
T ss_pred CcEEEEeeEEEEECCE-----EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc
Confidence 3467899999999875 788888 899999999999999999999999999875 222
Q ss_pred -------CeEEEEcCCCccccC------------CC-CC-------------CCCCCc------cccCCCCCHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN------------GD-IP-------------HPGIGN------ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~------------~~-ip-------------~~~Lg~------~rrl~vLSgG~qqrv~ 262 (660)
..++|+.+...+... .. .. ..++.. .+.+..+|+||+||++
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred chhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 135666654322100 00 00 012221 1345679999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||++++++|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~ 243 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE 243 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999997765 12368999999999999999999999999998664
No 230
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.1e-23 Score=210.35 Aligned_cols=157 Identities=20% Similarity=0.343 Sum_probs=125.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------e
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------R 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------r 223 (660)
++.+||+++..++ .++.++ +.+||+++|+||||+|||||||.|+|.+.|+.|+ +
T Consensus 2 i~a~nls~~~~Gr-----~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ 76 (259)
T COG4559 2 IRAENLSYSLAGR-----RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76 (259)
T ss_pred eeeeeeEEEeecc-----eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHH
Confidence 6789999999877 889988 8999999999999999999999999999998663 1
Q ss_pred EEEEcCCCcccc---------CCCCCCCC-------------------CCc--cccCCCCCHHHHHHHHHHHHHcc--CC
Q 038101 224 VMIVDTSSEIGG---------NGDIPHPG-------------------IGN--ARRMQVPNSEMQHKVLIEAVENH--MP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~---------~~~ip~~~-------------------Lg~--~rrl~vLSgG~qqrv~IA~aL~~--~P 271 (660)
-++++|...+++ ++.+|+.. +.. .|....||||+||||.+||+++. .|
T Consensus 77 raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred hhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 233344443332 24455421 100 14567899999999999999983 33
Q ss_pred ----cEEEEeCCCCCccHHHHH-------HHHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 ----QVIVIDEIGTKLEAMAAS-------TIAQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ----~VLILDEPgsgLD~~a~~-------~i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
.+|+|||||+.||+.... +++..|..|+++-||++++..+||+++.|..|++..-
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~ 222 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIAS 222 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeec
Confidence 499999999999998644 4477899999999999999999999999999998763
No 231
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=1.6e-23 Score=209.37 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=124.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCC---------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA---NDYK---------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~---p~~G---------------k 222 (660)
.+.+.|++++|.+.- +...+++++ +++|++++|+||||||||||+++|+|++. ++.| +
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 356889999996531 123678877 89999999999999999999999999998 6544 2
Q ss_pred eEEEEcCCCcccc-------------CCC-----------------CCCCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGG-------------NGD-----------------IPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~-------------~~~-----------------ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|+++...+.. ... +...++.. .+.+..+|+||+||++||++++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 4677766542210 000 00001111 135578999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcCh-hHHHHhcCcEEEEEcCeEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGV-TIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~-~l~~~i~dril~l~~G~I~~ 325 (660)
|++||+|||+++||+.++..+ .+.|.|+|++||+. +.+..+||+++.+..|++..
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999987775 34689999999998 57888999999999999754
No 232
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2.4e-23 Score=211.42 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=123.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++|++++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.+ +.|
T Consensus 6 ~i~~~~l~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYGEK-----HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEECCe-----eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 57899999999865 688888 899999999999999999999999998642 122
Q ss_pred ------CeEEEEcCCCcccc--------C----CCC-CC-------------CCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGG--------N----GDI-PH-------------PGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~--------~----~~i-p~-------------~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
+.++|+.+...+.. . .+. .. .++. ..+....+|+||+||++|
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred chhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 23666666543210 0 000 00 0111 013456799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.++..+ ...+.|||++||+...+..+||+++.+..|++...
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF 229 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc
Confidence 9999999999999999999999998765 22468999999999999889999999999998653
No 233
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.2e-24 Score=234.32 Aligned_cols=154 Identities=13% Similarity=0.175 Sum_probs=123.9
Q ss_pred EeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------CeEE
Q 038101 168 IGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------KRVM 225 (660)
Q Consensus 168 ~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------krV~ 225 (660)
+||+++|++. .+|+++ +.+|++++|+||||||||||+++|+|++.|+.| +.++
T Consensus 2 ~nl~~~~~~~-----~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 76 (491)
T PRK10982 2 SNISKSFPGV-----KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGIS 76 (491)
T ss_pred CceEEEeCCE-----EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 5789999765 688887 899999999999999999999999999987643 2367
Q ss_pred EEcCCCccccC---------CCC-------C-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 226 IVDTSSEIGGN---------GDI-------P-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 226 ~Vdq~~eIa~~---------~~i-------p-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
|+++...+... ... . ..++.. .+.+..||+|||||++||++++++|++|
T Consensus 77 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 77 MVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred EEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 77765422100 000 0 012221 2456789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999997775 45699999999999999999999999999998654
No 234
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=1.3e-23 Score=236.71 Aligned_cols=157 Identities=18% Similarity=0.177 Sum_probs=128.7
Q ss_pred ceEEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCC
Q 038101 163 RKGAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSS 231 (660)
Q Consensus 163 ~~LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~ 231 (660)
..++++||+++|+ +. .+|+++ |.+|++++|+|||||||||||++|+|++.|+.| .+|+|+++..
T Consensus 5 ~~l~i~~l~~~y~~~~-----~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~ 79 (556)
T PRK11819 5 YIYTMNRVSKVVPPKK-----QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEP 79 (556)
T ss_pred EEEEEeeEEEEeCCCC-----eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCC
Confidence 4689999999998 54 688888 999999999999999999999999999988755 3578888764
Q ss_pred ccccC---------C------------------CCC-----------------------------------CCCCC-ccc
Q 038101 232 EIGGN---------G------------------DIP-----------------------------------HPGIG-NAR 248 (660)
Q Consensus 232 eIa~~---------~------------------~ip-----------------------------------~~~Lg-~~r 248 (660)
.+... + ..+ ..++. ..+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 159 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDA 159 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccC
Confidence 32100 0 000 01111 134
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 249 RMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
++..||+|||||++||++++.+|++||+||||++||+.++..+ .+.+.|||++||+.+++..+||+++.+..|++.
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 6678999999999999999999999999999999999998876 445669999999999999999999999999975
No 235
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=6.1e-24 Score=206.54 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=127.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++++++.+|.. .+...+|+++ |+.||.++|+||+||||||||-.++|+..++.|
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 35677888888754 3445688887 899999999999999999999999999988743
Q ss_pred ---CeEEEEcCCCccc-c---CCC--CC--------------------CCCCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 ---KRVMIVDTSSEIG-G---NGD--IP--------------------HPGIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 ---krV~~Vdq~~eIa-~---~~~--ip--------------------~~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
++|+||+|+..+- . ..+ +| ..+++.. -...+||||+||||+||||++-.
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 5789998875321 0 000 01 1144431 24578999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
|+||+.||||.+||......+ ++.|.|+|++|||..++. -|++.+.+..|++.
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~ 225 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA-RCDRQLRLRSGRLV 225 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-hhhheeeeecceec
Confidence 999999999999999887665 578999999999999876 59999999999974
No 236
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-23 Score=211.72 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=122.7
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC----------------
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK---------------- 221 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G---------------- 221 (660)
+++||+++|+.. .+++++ +.+|++++|+||||||||||+++|+|++. + +.|
T Consensus 7 ~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 7 SVKNLNLWYGSK-----QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EeeeEEEEECCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 589999999764 688887 89999999999999999999999999975 2 223
Q ss_pred ----CeEEEEcCCCcccc------------CCCC---------------CCCCCCc------cccCCCCCHHHHHHHHHH
Q 038101 222 ----KRVMIVDTSSEIGG------------NGDI---------------PHPGIGN------ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 222 ----krV~~Vdq~~eIa~------------~~~i---------------p~~~Lg~------~rrl~vLSgG~qqrv~IA 264 (660)
+.++|+++...+.. ..+. ...++.. .+....+|+|||||++||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 13667766532210 0000 0012221 124567999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++++.+|++||+|||+++||+.++..+ ...|.|||++||+..++..+||+++.+..|++...
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 229 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEY 229 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEe
Confidence 999999999999999999999987765 23589999999999999999999999999998653
No 237
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.9e-23 Score=239.20 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=127.0
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC-c-
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSS-E- 232 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~-e- 232 (660)
+.++||+++||.. .+|+++ |.+|++++|+||||||||||||+|+|++.|+.|. +++++++.. .
T Consensus 2 i~i~nls~~~g~~-----~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~ 76 (638)
T PRK10636 2 IVFSSLQIRRGVR-----VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPAL 76 (638)
T ss_pred EEEEEEEEEeCCc-----eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 6799999999876 789988 9999999999999999999999999999888663 356665521 0
Q ss_pred ----cccC------------------------------------CC----------CCCCCCC---ccccCCCCCHHHHH
Q 038101 233 ----IGGN------------------------------------GD----------IPHPGIG---NARRMQVPNSEMQH 259 (660)
Q Consensus 233 ----Ia~~------------------------------------~~----------ip~~~Lg---~~rrl~vLSgG~qq 259 (660)
++.. +. +...++. ..+.+..||+||||
T Consensus 77 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 77 PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 0000 00 0012332 12466789999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++||++++.+|+||||||||++||+.++..+ .+.+.+||++||+..++..+||+++.+..|++..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999998776 4557899999999999999999999999999864
No 238
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2e-23 Score=215.80 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=125.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++. ....+|+++ +.+|++++|+|+||||||||+++|+|++.++.|.
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 57899999999742 011478887 8999999999999999999999999999887552
Q ss_pred eEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 223 RVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 223 rV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.++|+.+... +... .... ..++.. .+.+..+|+|||||++||++++.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 3566666531 1100 0010 012211 135678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||+|||+++||+.++..+ .+ .|.|||++||+.+++. .||+++.+..|++...
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~ 221 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKE 221 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEe
Confidence 999999999999998776 23 3999999999999987 5999999999998653
No 239
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.7e-23 Score=216.09 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=124.4
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC-----------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK----------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G----------- 221 (660)
....+++++|+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++. ++.|
T Consensus 36 ~~~~l~i~~l~~~~~~~-----~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 36 GETVIEARDLNVFYGDE-----QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CCceEEEEEEEEEECCE-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 34468899999999865 688887 89999999999999999999999999986 3323
Q ss_pred ---------CeEEEEcCCCccccC------------CCCC------------CCCCC------ccccCCCCCHHHHHHHH
Q 038101 222 ---------KRVMIVDTSSEIGGN------------GDIP------------HPGIG------NARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 ---------krV~~Vdq~~eIa~~------------~~ip------------~~~Lg------~~rrl~vLSgG~qqrv~ 262 (660)
++++|+++...+... ...+ ..++. ..++...||+|||||++
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred cccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 135666665322100 0011 01221 12456789999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEE-EEEcCeEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSL-EMLIGGVQNV 326 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril-~l~~G~I~~V 326 (660)
||++++.+|++||+|||+++||+.++..+ ...+.+||++||+.+++..+||+++ ++..|++...
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe
Confidence 99999999999999999999999997765 1235899999999999999999975 5688998653
No 240
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.9e-23 Score=196.30 Aligned_cols=145 Identities=20% Similarity=0.350 Sum_probs=111.9
Q ss_pred EEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCC-CC
Q 038101 167 IIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIP-HP 242 (660)
Q Consensus 167 I~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip-~~ 242 (660)
++++++.|.+. .++.++ +.+|++++|+|+||+|||||+++|+|++.++.|. | +++.. .+....... ..
T Consensus 2 ~~~~~~~~~~~-----~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~-i-~~~~~-~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGGR-----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE-I-LIDGK-DIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCCe-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE-E-EECCE-EcccCCHHHHHh
Confidence 67889998764 577766 8999999999999999999999999999887663 3 33321 110000000 00
Q ss_pred CCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcE
Q 038101 243 GIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPS 315 (660)
Q Consensus 243 ~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dri 315 (660)
.+ -.+..+|+||+||++|+++++.+|+++++|||+++||..++..+ .+.|.++|++||+.++...+||++
T Consensus 74 ~i---~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i 150 (157)
T cd00267 74 RI---GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRV 150 (157)
T ss_pred ce---EEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 00 01123999999999999999999999999999999999987765 234689999999999999999999
Q ss_pred EEEEcCe
Q 038101 316 LEMLIGG 322 (660)
Q Consensus 316 l~l~~G~ 322 (660)
+.+..|+
T Consensus 151 ~~l~~g~ 157 (157)
T cd00267 151 IVLKDGK 157 (157)
T ss_pred EEEeCcC
Confidence 9987763
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.90 E-value=2.3e-23 Score=232.30 Aligned_cols=163 Identities=17% Similarity=0.273 Sum_probs=125.9
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++||+++|+..-.+...+|+++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 36899999999953100112578887 8999999999999999999999999999876442
Q ss_pred --------eEEEEcCCCccccC-----------C-CCC-------------CCCCCc-------cccCCCCCHHHHHHHH
Q 038101 223 --------RVMIVDTSSEIGGN-----------G-DIP-------------HPGIGN-------ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 223 --------rV~~Vdq~~eIa~~-----------~-~ip-------------~~~Lg~-------~rrl~vLSgG~qqrv~ 262 (660)
+++|+++...+... . ..+ ..++.. .+++..||+|||||++
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 24555544221100 0 001 123431 2456789999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||+|++.+|++||+||||++||+.++..+ + +.|.+||++||+.+++..+||+++.+..|++..
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998775 2 348999999999999999999999999999865
No 242
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=238.71 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=129.4
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSS 231 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~ 231 (660)
+..++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.|+.|. +|+|+++..
T Consensus 310 ~~~l~~~~l~~~y~~~-----~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~ 384 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR-----IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQ 384 (638)
T ss_pred CceEEEEeeEEEeCCe-----eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcc
Confidence 3468999999999875 688887 8999999999999999999999999999887552 578888753
Q ss_pred --ccccC-------CCC-------------CCCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH
Q 038101 232 --EIGGN-------GDI-------------PHPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM 286 (660)
Q Consensus 232 --eIa~~-------~~i-------------p~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~ 286 (660)
.+... ..+ ..+++.. .+++..||+|||||++||++++.+|+||||||||++||+.
T Consensus 385 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~ 464 (638)
T PRK10636 385 LEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464 (638)
T ss_pred hhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 11100 000 0123321 2467889999999999999999999999999999999999
Q ss_pred HHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 287 AASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 287 a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
++..+ .+.+.|||++||+..++..+||+++.+..|++.
T Consensus 465 ~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 465 MRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 98876 344569999999999999999999999999875
No 243
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=4.4e-23 Score=210.65 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.+++++++++|+.. ...+++++ +++|++++|+|+||||||||+++|+|++.+..|.
T Consensus 19 ~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 19 EIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred eEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 36799999999752 01578887 8999999999999999999999999999877552
Q ss_pred eEEEEcCCCccccC---CCC-CC--------------CCC-----------Cc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 RVMIVDTSSEIGGN---GDI-PH--------------PGI-----------GN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 rV~~Vdq~~eIa~~---~~i-p~--------------~~L-----------g~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.|+|+++...+... ..+ +. .++ .. ......+|+||+||++||++++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 36666665432110 000 00 011 00 0123579999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|||+++||+.+...+ ...|.|+|++||+.+.+.. ||+++.+..|++...
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~ 235 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVEC 235 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEe
Confidence 99999999999999987765 2358999999999999875 999999999998654
No 244
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=1.7e-23 Score=206.94 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=113.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---------------eEE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------RVM 225 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------rV~ 225 (660)
.++++||++.|++. .+++++ |.+|++++|+||||||||||+++|+|++.++.|. .++
T Consensus 2 ~l~~~~l~~~~~~~-----~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGGR-----VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76 (207)
T ss_pred EEEEEeEEEEECCe-----EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcE
Confidence 47899999999865 688887 8999999999999999999999999999887662 133
Q ss_pred EEcCCCccccC----------CCC-C-----------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 226 IVDTSSEIGGN----------GDI-P-----------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 226 ~Vdq~~eIa~~----------~~i-p-----------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
|+.+...+... ..+ . ..++.. .++...+|+|||||++||++++.+|++||+|||++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 156 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTA 156 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 44322211000 000 0 012221 23456799999999999999999999999999999
Q ss_pred CccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 282 KLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 282 gLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+||+.+...+ ++.|.|||++||+.+++.. |.++.+
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~ 198 (207)
T PRK13539 157 ALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDL 198 (207)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEee
Confidence 9999987775 3469999999999988765 777555
No 245
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.90 E-value=3.1e-23 Score=237.17 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=125.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCCcc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSSEI 233 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~eI 233 (660)
.++++||+++|+.. .+|+++ |.+|++++|+||||||||||||+|+|++.|+.|. .++++++....
T Consensus 3 ~l~i~~ls~~~~~~-----~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~ 77 (635)
T PRK11147 3 LISIHGAWLSFSDA-----PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77 (635)
T ss_pred EEEEeeEEEEeCCc-----eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC
Confidence 47899999999876 788988 8999999999999999999999999999888663 23344332100
Q ss_pred ccCC--------------------------------------------------C----------CCCCCCCccccCCCC
Q 038101 234 GGNG--------------------------------------------------D----------IPHPGIGNARRMQVP 253 (660)
Q Consensus 234 a~~~--------------------------------------------------~----------ip~~~Lg~~rrl~vL 253 (660)
.... . +...++...+.+..|
T Consensus 78 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~L 157 (635)
T PRK11147 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSL 157 (635)
T ss_pred CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhc
Confidence 0000 0 001123223567889
Q ss_pred CHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 254 NSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 254 SgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|+|||||++||++++.+|+||||||||++||+.++..+ .+.+.+||++||+..++..+||+++.+..|++..
T Consensus 158 SgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 158 SGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999998776 4456799999999999999999999999999864
No 246
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=5.7e-24 Score=215.92 Aligned_cols=157 Identities=21% Similarity=0.325 Sum_probs=124.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC----------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT---------- 229 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq---------- 229 (660)
..+++++|+++||.- .+++++ +++|++++||||||+|||||+++|+|.++|+.|+ |.+-.+
T Consensus 3 ~lL~v~~l~k~FGGl-----~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~-v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLSKRFGGL-----TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGT-VIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccceeecCCE-----EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCce-EEECCcccCCCCHHHH
Confidence 346799999999987 899998 9999999999999999999999999999999763 332211
Q ss_pred ----------CCccc-cC--------C-----------CCC------------------CCCCCc--cccCCCCCHHHHH
Q 038101 230 ----------SSEIG-GN--------G-----------DIP------------------HPGIGN--ARRMQVPNSEMQH 259 (660)
Q Consensus 230 ----------~~eIa-~~--------~-----------~ip------------------~~~Lg~--~rrl~vLSgG~qq 259 (660)
...+. .+ + ..+ ..++.. .+....||.|+|+
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 11110 00 0 000 012222 1345679999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
++.||+|++.+|++|+||||.+|+.+....++ .+ .|+||+++-|+++++..+||+++++..|++.+
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999887665 33 57999999999999999999999999999755
No 247
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.5e-23 Score=207.61 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=123.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc--c---CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA--N---DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p---~~G-------------- 221 (660)
.++++||++.|++. .+++++ +.+|++++|+|||||||||||++|+|++. + +.|
T Consensus 3 ~l~~~~v~~~~~~~-----~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDA-----HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeCCe-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 36799999999865 688887 89999999999999999999999999863 2 323
Q ss_pred ------CeEEEEcCCCccccC------------CCC-C-------------CCCCCc------cccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDI-P-------------HPGIGN------ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~i-p-------------~~~Lg~------~rrl~vLSgG~qqrv~I 263 (660)
++++|+++...+... ... . ..++.. .+....+|+|||||++|
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 157 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCI 157 (250)
T ss_pred cHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHH
Confidence 236666655322100 000 0 002210 13456799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++++.+|++||+|||+++||+.+...+ ...|.|||++||+...+..+|++++.+..|++...
T Consensus 158 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~ 226 (250)
T PRK14266 158 ARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIES 226 (250)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEe
Confidence 9999999999999999999999987776 23589999999999999999999999999998654
No 248
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.1e-23 Score=210.82 Aligned_cols=159 Identities=17% Similarity=0.263 Sum_probs=123.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------- 221 (660)
..++++||+++|++. .+++++ +++|++++|+|+||||||||+++|+|++.+ +.|
T Consensus 15 ~~l~~~~l~~~~~~~-----~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYGGY-----QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEECCe-----eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 357899999999865 688887 899999999999999999999999999864 222
Q ss_pred ---------CeEEEEcCCCccccC------------CCCCC--------------CCCC----c--cccCCCCCHHHHHH
Q 038101 222 ---------KRVMIVDTSSEIGGN------------GDIPH--------------PGIG----N--ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 ---------krV~~Vdq~~eIa~~------------~~ip~--------------~~Lg----~--~rrl~vLSgG~qqr 260 (660)
+.++|+.+...+... ..++. .++. . .+....+|+||+||
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 125555554321100 00000 0111 0 13456799999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||++++.+|++||+|||+++||+.++..+ ...+.|||++||+.+++..+||+++.+..|++...
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998775 13478999999999999999999999999998764
No 249
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=9.8e-23 Score=210.20 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=121.5
Q ss_pred eEEEEeEEEEECcc---------------ccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC---
Q 038101 164 KGAIIGLTCRVGRA---------------VSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--- 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~---------------v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--- 222 (660)
.+++.||++.|.-. ..+...+++++ +.+|++++|+||||||||||+++|+|++.++.|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46677787777431 11223466766 8999999999999999999999999999988763
Q ss_pred --eEEEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 --RVMIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 --rV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.+.++.+...+.. ..++. ..+++. .+.+..+|+||+||++||++++.+|+
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~ 163 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPD 163 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 1223322211110 00110 012221 23567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+|||+++||+.+...+ .+.|.|||++||+..++..+||+++.+..|++...
T Consensus 164 iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 164 ILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEe
Confidence 9999999999999876654 45699999999999999999999999999998654
No 250
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=1.5e-24 Score=214.94 Aligned_cols=167 Identities=21% Similarity=0.255 Sum_probs=132.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.+.+.||.|+|++. .+++++ +++||+++|+||||+||||.+.++.|+.+++.|+
T Consensus 4 ~L~a~~l~K~y~kr-----~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RAr 78 (243)
T COG1137 4 TLVAENLAKSYKKR-----KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78 (243)
T ss_pred EEEehhhhHhhCCe-----eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhh
Confidence 46789999999988 899998 9999999999999999999999999999999774
Q ss_pred -eEEEEcCCCccccC--------------C-CCC-------------CCCCCcc--ccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 -RVMIVDTSSEIGGN--------------G-DIP-------------HPGIGNA--RRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~--------------~-~ip-------------~~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.|+|++|...|... . +.. .+.+... .+-..||||+++|+.|||||+.+|
T Consensus 79 lGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred cCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCC
Confidence 23344443322110 0 000 0111111 234579999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHHHh
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVLE 344 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~Ile 344 (660)
+.|+||||++|.||.+..++ +++|+.|++|-|+..+.-.+||+.+++..|++.+- |+++++..
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~----------G~p~ei~~ 228 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE----------GSPEEIVN 228 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec----------CCHHHHhc
Confidence 99999999999999997765 67899999999999999999999999999998652 46666664
Q ss_pred h
Q 038101 345 R 345 (660)
Q Consensus 345 r 345 (660)
.
T Consensus 229 n 229 (243)
T COG1137 229 N 229 (243)
T ss_pred C
Confidence 4
No 251
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=1.9e-23 Score=204.81 Aligned_cols=145 Identities=22% Similarity=0.315 Sum_probs=110.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
++++++++.|+.. .+|+++ +.+|++++|+||||||||||+++|+|++.|+.|. .+
T Consensus 1 l~~~~l~~~~~~~-----~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i 75 (198)
T TIGR01189 1 LAARNLACSRGER-----MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNI 75 (198)
T ss_pred CEEEEEEEEECCE-----EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhhe
Confidence 3689999999865 688887 8999999999999999999999999999887552 34
Q ss_pred EEEcCCCccccC----------CCC-C-----------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 225 MIVDTSSEIGGN----------GDI-P-----------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 225 ~~Vdq~~eIa~~----------~~i-p-----------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
+|+++...+... ... . ..++.. .+.+..+|+||+||++||++++.+|++||+|||+
T Consensus 76 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 76 LYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred EEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 555544322100 000 0 012221 2456789999999999999999999999999999
Q ss_pred CCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEE
Q 038101 281 TKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSL 316 (660)
Q Consensus 281 sgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril 316 (660)
++||+.++..+ ++.|.|+|++||+... ..|++++
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~--~~~~~~~ 196 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG--LVEAREL 196 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc--ccceEEe
Confidence 99999987765 3568999999998754 4466654
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.90 E-value=3.1e-23 Score=230.07 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=126.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-DYK----------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~G----------------- 221 (660)
..++++|++++|+.. +...+++++ +.+|++++|+|||||||||||++|+|++.| +.|
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 368999999998310 011578877 899999999999999999999999999974 322
Q ss_pred --CeEEEEcCCCc----ccc--------------CC---CCC-------------CCCCCc---cccCCCCCHHHHHHHH
Q 038101 222 --KRVMIVDTSSE----IGG--------------NG---DIP-------------HPGIGN---ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 --krV~~Vdq~~e----Ia~--------------~~---~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~ 262 (660)
++++|+++... +.. .. .+. ..++.. .+++..||+|||||++
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 23677766531 110 00 001 013321 2456789999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
||++++++|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+.+|++...+
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999987764 457999999999999999999999999999986544
No 253
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.5e-23 Score=231.43 Aligned_cols=164 Identities=14% Similarity=0.142 Sum_probs=127.4
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-DYK---------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~G---------------- 221 (660)
...++++||+++|+.. +...+++++ +++|++++|+||||||||||+|+|+|++.+ +.|
T Consensus 257 ~~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 257 EVILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred CceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 3468999999999421 012578877 999999999999999999999999999873 432
Q ss_pred ---CeEEEEcCCCc---c-cc--------CC---CC------C-------------CCCCC---ccccCCCCCHHHHHHH
Q 038101 222 ---KRVMIVDTSSE---I-GG--------NG---DI------P-------------HPGIG---NARRMQVPNSEMQHKV 261 (660)
Q Consensus 222 ---krV~~Vdq~~e---I-a~--------~~---~i------p-------------~~~Lg---~~rrl~vLSgG~qqrv 261 (660)
..++|+++... + .. .. .+ . ..++. ..+++..||+|||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv 414 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKA 414 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHH
Confidence 12677776521 1 00 00 00 0 01332 1245678999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||++++.+|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+.+|++...+
T Consensus 415 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 415 VLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999998775 456999999999999999999999999999986543
No 254
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.90 E-value=4.7e-23 Score=206.74 Aligned_cols=138 Identities=17% Similarity=0.201 Sum_probs=109.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc----CCC----------------CeEEEEcCCCc--ccc-C---------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAN----DYK----------------KRVMIVDTSSE--IGG-N--------- 236 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p----~~G----------------krV~~Vdq~~e--Ia~-~--------- 236 (660)
+++|++++|+||||||||||+++|+|++.| +.| +.|+|+.+... +.. .
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 88 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIET 88 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHH
Confidence 778999999999999999999999999987 433 24777766542 110 0
Q ss_pred ---CCCC-------------CCCCC-----ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----
Q 038101 237 ---GDIP-------------HPGIG-----NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI---- 291 (660)
Q Consensus 237 ---~~ip-------------~~~Lg-----~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i---- 291 (660)
.... ..++. ..+.+..+|+|||||++||++++++|+|||+|||+++||+.+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l 168 (230)
T TIGR02770 89 LRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL 168 (230)
T ss_pred HHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 0000 01232 1235577999999999999999999999999999999999987664
Q ss_pred ---Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 292 ---AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 292 ---~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++ .|.|||++||+.+++..+||+++.+..|++...
T Consensus 169 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 207 (230)
T TIGR02770 169 RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVER 207 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 23 489999999999999999999999999998653
No 255
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.5e-23 Score=209.56 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=123.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC-------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G------------- 221 (660)
..+.+++++++|++. .+++++ +.+|++++|+|+||||||||+++|+|++.| +.|
T Consensus 7 ~~~~~~~~~~~~~~~-----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYGNF-----MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeCCE-----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 346789999999876 688887 999999999999999999999999999865 223
Q ss_pred -------CeEEEEcCCCccccC--------C----CCC------------CCCCCc------cccCCCCCHHHHHHHHHH
Q 038101 222 -------KRVMIVDTSSEIGGN--------G----DIP------------HPGIGN------ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 222 -------krV~~Vdq~~eIa~~--------~----~ip------------~~~Lg~------~rrl~vLSgG~qqrv~IA 264 (660)
+.++|+++...+... . ... ..++.. .+....+|+||+||++||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred cchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 135666554322110 0 000 012211 123457999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEE--------cCeEEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEML--------IGGVQNV 326 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~--------~G~I~~V 326 (660)
+|++++|++||+|||+++||+.++..+ ...|.|+|++||+.+++..+||+++++. .|++...
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 999999999999999999999998776 2357999999999999999999999996 6887654
No 256
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.90 E-value=3.5e-23 Score=232.79 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=127.4
Q ss_pred eEEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc
Q 038101 164 KGAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSE 232 (660)
Q Consensus 164 ~LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~e 232 (660)
.++++||+++|+ +. .+|+++ |++|++++|+|||||||||||++|+|++.|+.| ..|+|+++...
T Consensus 4 ~i~~~nls~~~~~~~-----~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPKK-----EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCCC-----eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 578999999997 44 688888 999999999999999999999999999988765 35788887643
Q ss_pred cccC--------CCC-------------------CC-----------------------------------CCCC-cccc
Q 038101 233 IGGN--------GDI-------------------PH-----------------------------------PGIG-NARR 249 (660)
Q Consensus 233 Ia~~--------~~i-------------------p~-----------------------------------~~Lg-~~rr 249 (660)
+... ..+ +. .++. ..+.
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 158 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD 158 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCc
Confidence 2100 000 00 0111 1245
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 250 MQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 250 l~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+..||+|||||++||++++.+|++|||||||++||+.++..+ .+.+.+||++||+.+++..+||+++.+..|++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 678999999999999999999999999999999999998775 455679999999999999999999999999975
No 257
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=7e-23 Score=212.77 Aligned_cols=158 Identities=15% Similarity=0.219 Sum_probs=121.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|... ...+|+++ |++|++++|+||||+||||||++|+|++. ..| +
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhh
Confidence 46799999999431 01578888 99999999999999999999999999987 333 2
Q ss_pred eEEEEcCCCcccc---------CCCCC---------CCCCCcc--ccCC-----------CCCHHHHHHHHHHHHHccCC
Q 038101 223 RVMIVDTSSEIGG---------NGDIP---------HPGIGNA--RRMQ-----------VPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 rV~~Vdq~~eIa~---------~~~ip---------~~~Lg~~--rrl~-----------vLSgG~qqrv~IA~aL~~~P 271 (660)
+++|+++...+.. .+... ..++... +... .+|+||+||++||+|++.+|
T Consensus 78 ~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred hEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 4677766553311 00000 0112110 1222 39999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|||+++||+.....+ ...|+|||++||+.+.+.. ||++++|..|++...
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~ 217 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY 217 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec
Confidence 99999999999999987765 2358999999999988765 999999999998764
No 258
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.4e-23 Score=230.44 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=125.4
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|+++.|+ .+|+++ +.+|++++|+|||||||||||++|+|++.|+.|
T Consensus 264 ~~l~~~~l~~~~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 336 (510)
T PRK09700 264 TVFEVRNVTSRDR-------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAV 336 (510)
T ss_pred cEEEEeCccccCC-------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHH
Confidence 4689999998752 367877 899999999999999999999999999987633
Q ss_pred -CeEEEEcCCC---cc-cc--------CC------------CC-C-------------CCCCC-c--cccCCCCCHHHHH
Q 038101 222 -KRVMIVDTSS---EI-GG--------NG------------DI-P-------------HPGIG-N--ARRMQVPNSEMQH 259 (660)
Q Consensus 222 -krV~~Vdq~~---eI-a~--------~~------------~i-p-------------~~~Lg-~--~rrl~vLSgG~qq 259 (660)
++++|+++.. .+ .. .. .+ . ..++. . .+.+..||+||||
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 416 (510)
T PRK09700 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQ 416 (510)
T ss_pred HCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHH
Confidence 1367877752 11 00 00 00 0 01332 1 2456789999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++||++++++|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+.+|++...+
T Consensus 417 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 417 KVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999987765 356999999999999999999999999999986543
No 259
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=3.3e-23 Score=203.69 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=111.2
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------eE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------RV 224 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------rV 224 (660)
++++|++++|+.. .+++++ +++|++++|+||||||||||+++|+|++.++.|. .+
T Consensus 2 l~~~~l~~~~~~~-----~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i 76 (200)
T PRK13540 2 LDVIELDFDYHDQ-----PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL 76 (200)
T ss_pred EEEEEEEEEeCCe-----eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe
Confidence 6799999999865 688888 8999999999999999999999999999887652 24
Q ss_pred EEEcCCCccc-cC--------C-CCC-----------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 225 MIVDTSSEIG-GN--------G-DIP-----------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 225 ~~Vdq~~eIa-~~--------~-~ip-----------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
+|+++...+. .. . ... ..++.. .+.+..+|+||+||++||++++++|++||+|||++
T Consensus 77 ~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 77 CFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred EEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4554432211 00 0 000 012221 23456799999999999999999999999999999
Q ss_pred CccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCc
Q 038101 282 KLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 282 gLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dr 314 (660)
+||+.++..+ ++.|.+||++||+...++. ||.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 9999997776 3468999999999987754 554
No 260
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.89 E-value=3.8e-23 Score=207.84 Aligned_cols=137 Identities=20% Similarity=0.293 Sum_probs=107.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEEcCCCccccC---------------CCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------RVMIVDTSSEIGGN---------------GDIP 240 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------rV~~Vdq~~eIa~~---------------~~ip 240 (660)
+.+|++++|+||||||||||+++|+|++.++.|. ..+++.+...+... ..+.
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 87 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLS 87 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHhcccCCC
Confidence 6789999999999999999999999999887653 12344443221100 0000
Q ss_pred -------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCE
Q 038101 241 -------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQ 297 (660)
Q Consensus 241 -------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~Gvt 297 (660)
..++.. .+.+..+|+|||||++||++++.+|++||+|||+++||+.++..+ .+ .|.|
T Consensus 88 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~t 167 (230)
T TIGR01184 88 KSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167 (230)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 012221 135567999999999999999999999999999999999998775 22 4899
Q ss_pred EEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 298 LVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 298 VI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||++||+.+++..+||+++.+..|++..
T Consensus 168 ii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 168 VLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred EEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 9999999999999999999999999854
No 261
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.8e-24 Score=211.05 Aligned_cols=157 Identities=20% Similarity=0.338 Sum_probs=129.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC-----------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT----------- 229 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq----------- 229 (660)
+++++|++|+||.. .++.++ +.+|.++.|+||||+||||||-+++|+++.+.|. | +++.
T Consensus 1 MI~i~nv~K~y~~~-----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~-i-~i~g~~~~~~~s~~L 73 (252)
T COG4604 1 MITIENVSKSYGTK-----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGE-I-TIDGLELTSTPSKEL 73 (252)
T ss_pred CeeehhhhHhhCCE-----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCce-E-EEeeeecccCChHHH
Confidence 36789999999987 889988 8999999999999999999999999999998773 2 2222
Q ss_pred ---------CCcc---------ccCCCCCCC-------------------CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 230 ---------SSEI---------GGNGDIPHP-------------------GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 230 ---------~~eI---------a~~~~ip~~-------------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.+.+ -+.|.+|+. .+.. .|.++.|||||+||..+|.+++.+
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQd 153 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQD 153 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeecc
Confidence 1111 123445542 1111 267789999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
.++++||||.++||......+ .+.|+|++++-||.+++..++|.++.+.+|++..-+
T Consensus 154 TdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G 218 (252)
T COG4604 154 TDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQG 218 (252)
T ss_pred CcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecC
Confidence 999999999999999875543 467999999999999999999999999999987644
No 262
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=5.9e-23 Score=203.95 Aligned_cols=151 Identities=12% Similarity=0.142 Sum_probs=114.6
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------------- 222 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------------- 222 (660)
.+.+++++|++. ..+++++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 2 ~~~~~~~~~~~~----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (218)
T cd03290 2 QVTNGYFSWGSG----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRN 77 (218)
T ss_pred eeeeeEEecCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhh
Confidence 478899999754 2578887 8999999999999999999999999999876441
Q ss_pred --eEEEEcCCCccccC---------CCCCC---------CCCCc-------------cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 --RVMIVDTSSEIGGN---------GDIPH---------PGIGN-------------ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~---------~~ip~---------~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.++|+++...+... ..... .++.. ......+|+|||||++||++++.
T Consensus 78 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 78 RYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred cceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 25555554321100 00000 01110 12456799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH---------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI---------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i---------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
+|++||+|||+++||+.++..+ .+.|.|+|++||+.+... .||+++.+..|
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G 217 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDG 217 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCC
Confidence 9999999999999999975532 345899999999999885 69999988776
No 263
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=7e-23 Score=255.40 Aligned_cols=173 Identities=18% Similarity=0.201 Sum_probs=137.8
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
+..++++||+|+|++. ...+++++ |++|++++|+||||||||||+|+|+|++.|+.|
T Consensus 1935 ~~~L~v~nLsK~Y~~~---~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r 2011 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGT---SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVH 2011 (2272)
T ss_pred CceEEEEEEEEEECCC---CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHh
Confidence 3468999999999852 12588988 999999999999999999999999999988754
Q ss_pred CeEEEEcCCCcccc-------------CCCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 222 KRVMIVDTSSEIGG-------------NGDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 222 krV~~Vdq~~eIa~-------------~~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
+.|+|++|...+.. ..+++. .++.. .+++..+|+|||||+++|+|++++|+|
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V 2091 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL 2091 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 23677777543211 011211 12322 246688999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHHHhhc
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVLERK 346 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~Iler~ 346 (660)
|+||||++|||+.+++.+ ++.|.+||+|||++++++.+||++++|.+|++... |+.+++..+.
T Consensus 2092 LLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~----------Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCL----------GTIQHLKSKF 2161 (2272)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE----------CCHHHHHHHh
Confidence 999999999999998876 35699999999999999999999999999998764 3556665554
Q ss_pred C
Q 038101 347 G 347 (660)
Q Consensus 347 ~ 347 (660)
+
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 3
No 264
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.9e-22 Score=214.37 Aligned_cols=161 Identities=17% Similarity=0.254 Sum_probs=125.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-----CCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-----DYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-----~~G-------------- 221 (660)
.++++|++++|... ...+|+++ |.+|++++|+|||||||||||++|+|+..+ +.|
T Consensus 80 ~i~~~nls~~y~~~---~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 80 VFEIRNFNFWYMNR---TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred eEEEEeeEEEecCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 57899999999632 12588888 999999999999999999999999999852 222
Q ss_pred ------CeEEEEcCCCccccC------------CCCC--------------CCCCC------ccccCCCCCHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN------------GDIP--------------HPGIG------NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~------------~~ip--------------~~~Lg------~~rrl~vLSgG~qqrv~I 263 (660)
.+++|+++...+... .... ..++. ..++...||+|||||++|
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L 236 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI 236 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence 247777765433110 0000 00111 013556799999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+|++.+|+|||+|||+++||+.....+ ...+.|+|++||+++.+..+||+++++..|++...+
T Consensus 237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999987765 234799999999999999999999999999987643
No 265
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.89 E-value=9.1e-23 Score=229.49 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=128.1
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSS 231 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~ 231 (660)
.+.++++|++++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.|+.|. +|+|+++..
T Consensus 320 ~~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~ 394 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK-----LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSR 394 (552)
T ss_pred CeEEEEeeEEEEECCe-----eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCc
Confidence 3468999999999875 688888 9999999999999999999999999999887652 478888763
Q ss_pred c-ccc-----------C--CCC-----------CCCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCc
Q 038101 232 E-IGG-----------N--GDI-----------PHPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKL 283 (660)
Q Consensus 232 e-Ia~-----------~--~~i-----------p~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgL 283 (660)
. +.. . ... ...++.. .+++..||+|||||++||++++++|++||+||||++|
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~L 474 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 2 110 0 011 1123421 2456889999999999999999999999999999999
Q ss_pred cHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcC-eEEE
Q 038101 284 EAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIG-GVQN 325 (660)
Q Consensus 284 D~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G-~I~~ 325 (660)
|+.++..+ .+.+.+||++||+.+++..+||+++.+..| ++..
T Consensus 475 D~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 99998876 333458999999999999999999999874 6543
No 266
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=1.6e-23 Score=205.04 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-------EcCCC-c
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMI-------VDTSS-E 232 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~-------Vdq~~-e 232 (660)
.+++.+|.|+||.. ++|+++ -..|+.+.|||.+||||||+||||.-+..|..|. |.+ ..... .
T Consensus 6 ~l~v~dlHK~~G~~-----eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~-I~v~geei~~k~~~~G~ 79 (256)
T COG4598 6 ALEVEDLHKRYGEH-----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS-IRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred ceehhHHHhhcccc-----hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCce-EEECCeEEEeeeCCCCC
Confidence 57889999999987 999998 6789999999999999999999999888888663 221 11110 0
Q ss_pred ---------------ccc----CCCCCCC--------------------------------CCCcc--ccCCCCCHHHHH
Q 038101 233 ---------------IGG----NGDIPHP--------------------------------GIGNA--RRMQVPNSEMQH 259 (660)
Q Consensus 233 ---------------Ia~----~~~ip~~--------------------------------~Lg~~--rrl~vLSgG~qq 259 (660)
++. ...+.|+ ++.+. .+...|||||||
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ 159 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ 159 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHH
Confidence 000 0001111 22221 244568999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAAST-------IAQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~-------i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++|||||++.|+|+++||||++|||+-..+ +++.|.|++++||.+.++...++.+++++.|.|..
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 9999999999999999999999999987544 47899999999999999999999999999999855
No 267
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=9e-23 Score=214.10 Aligned_cols=158 Identities=22% Similarity=0.276 Sum_probs=122.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc-----cCCC--------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA-----NDYK-------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-----p~~G-------------- 221 (660)
.+.++||+++|+.. .+|+++ |.+|++++|+|||||||||||++|+|++. ++.|
T Consensus 45 ~l~i~nl~~~~~~~-----~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 45 KLSVEDLDVYYGDD-----HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred eEEEEEEEEEeCCe-----eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 47899999999865 688887 89999999999999999999999999985 2322
Q ss_pred ------CeEEEEcCCCcccc----------C---CC-----------CCC--------------CCCC----c--cccCC
Q 038101 222 ------KRVMIVDTSSEIGG----------N---GD-----------IPH--------------PGIG----N--ARRMQ 251 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~----------~---~~-----------ip~--------------~~Lg----~--~rrl~ 251 (660)
++++|+++...+.. . +. ... .++. . .+...
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 24667766543110 0 00 000 0111 0 13456
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcE-EEEEcCeEE
Q 038101 252 VPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPS-LEMLIGGVQ 324 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dri-l~l~~G~I~ 324 (660)
.+|+|||||++||+|++++|+|||+|||+++||+.++..+. ..+.+||++||+.+.+..+||++ +++..|++.
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 79999999999999999999999999999999999987761 23689999999999999999997 466889986
Q ss_pred EE
Q 038101 325 NV 326 (660)
Q Consensus 325 ~V 326 (660)
..
T Consensus 280 ~~ 281 (305)
T PRK14264 280 EY 281 (305)
T ss_pred Ee
Confidence 53
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.89 E-value=1e-22 Score=227.63 Aligned_cols=162 Identities=15% Similarity=0.227 Sum_probs=126.2
Q ss_pred ceEEEEeEEEEECccc------cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------
Q 038101 163 RKGAIIGLTCRVGRAV------SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v------~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------ 221 (660)
..++++||+++|++.- .+...+|+++ +.+|++++|+||||||||||+|+|+|++. ..|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 3589999999996210 0112578887 99999999999999999999999999985 322
Q ss_pred ---------CeEEEEcCCCc--c-cc----------C--C--CCC-------------CCCCCc---cccCCCCCHHHHH
Q 038101 222 ---------KRVMIVDTSSE--I-GG----------N--G--DIP-------------HPGIGN---ARRMQVPNSEMQH 259 (660)
Q Consensus 222 ---------krV~~Vdq~~e--I-a~----------~--~--~ip-------------~~~Lg~---~rrl~vLSgG~qq 259 (660)
++++|+++... + .. . . .++ ..++.. .+.+..||+||||
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence 23777777631 1 10 0 0 011 124431 2466889999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++||++++.+|++||+||||++||+.++..+ ++ .|.|||++||+.+++..+||+++.+.+|++..
T Consensus 433 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 433 RIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred HHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999998775 23 48999999999999999999999999999864
No 269
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.89 E-value=6e-23 Score=236.82 Aligned_cols=161 Identities=15% Similarity=0.236 Sum_probs=128.5
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+..- ..+|+++ |++||.++|+|+||||||||+|.|.|++.|..|
T Consensus 470 g~I~~~nvsf~y~~~~---~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR 546 (709)
T COG2274 470 GEIEFENVSFRYGPDD---PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLR 546 (709)
T ss_pred ceEEEEEEEEEeCCCC---cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHH
Confidence 4578999999998751 2578887 999999999999999999999999999999754
Q ss_pred CeEEEEcCCCccccC-------CCCCC---------------------CCCCccccC----CCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN-------GDIPH---------------------PGIGNARRM----QVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~-------~~ip~---------------------~~Lg~~rrl----~vLSgG~qqrv~IA~aL~~ 269 (660)
+.|++|.|.+.+... .+-|. +..|-...+ ..+|||||||++||||+++
T Consensus 547 ~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 547 RQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred hheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 468999887654210 00011 011111111 3589999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|+|||+||||++||+...+.+ ...|.|+|++||..+... .||++++++.|++...+
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVEQG 689 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceeccC
Confidence 9999999999999999997776 346899999999998775 69999999999987643
No 270
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.89 E-value=1.3e-22 Score=228.53 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=127.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC-
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSS- 231 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~- 231 (660)
..++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.|+.|. +|+|+++..
T Consensus 323 ~~l~~~~l~~~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~ 397 (556)
T PRK11819 323 KVIEAENLSKSFGDR-----LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD 397 (556)
T ss_pred eEEEEEeEEEEECCe-----eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh
Confidence 468999999999875 688888 9999999999999999999999999999887652 578888763
Q ss_pred cccc-----------C--CCC-----------CCCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 232 EIGG-----------N--GDI-----------PHPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 232 eIa~-----------~--~~i-----------p~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
.+.. . ... ...++.. .+.+..||+|||||++||++++.+|++||+||||++||
T Consensus 398 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 398 ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 2210 0 000 0123421 35678899999999999999999999999999999999
Q ss_pred HHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEc-CeEE
Q 038101 285 AMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLI-GGVQ 324 (660)
Q Consensus 285 ~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~-G~I~ 324 (660)
+.++..+ .+.+.+||++||+.+++..+||+++.+.+ |.+.
T Consensus 478 ~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 478 VETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 9998876 33334899999999999999999999986 5654
No 271
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.89 E-value=9.1e-23 Score=228.76 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=131.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCcc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSEI 233 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~eI 233 (660)
.+.++++++.||.. .++.++ +.+|+.+||+|+||||||||||+|+|.+.++.| .+|+++.|....
T Consensus 3 ~i~~~~ls~~~g~~-----~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~ 77 (530)
T COG0488 3 MITLENLSLAYGDR-----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPL 77 (530)
T ss_pred eEEEeeeEEeeCCc-----eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCc
Confidence 57899999999887 888887 899999999999999999999999999988865 378998886543
Q ss_pred ccC---------C----------------CC-------------------------------CCCCCCc-cccCCCCCHH
Q 038101 234 GGN---------G----------------DI-------------------------------PHPGIGN-ARRMQVPNSE 256 (660)
Q Consensus 234 a~~---------~----------------~i-------------------------------p~~~Lg~-~rrl~vLSgG 256 (660)
... + .+ ...++.. .+.+..||||
T Consensus 78 ~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG 157 (530)
T COG0488 78 DPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGG 157 (530)
T ss_pred CCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHH
Confidence 210 0 00 0012222 3677899999
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 257 MQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 257 ~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|.|++||++|..+||+|+|||||++||..++..+ . -.| |||++|||..+.+.+|+.|+.+..|++....
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEec
Confidence 99999999999999999999999999999998876 2 346 9999999999999999999999999876543
No 272
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.89 E-value=1.1e-22 Score=232.52 Aligned_cols=159 Identities=14% Similarity=0.231 Sum_probs=128.5
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSS 231 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~ 231 (660)
...++++||+++|++. .+|+++ |.+|++++|+|||||||||||++|+|++.|+.|. +|+|+++..
T Consensus 317 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 317 KIVFEMENVNYQIDGK-----QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred CceEEEeeeEEEECCe-----EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc
Confidence 3468999999999875 688887 8999999999999999999999999999887552 478888753
Q ss_pred c-ccc-----------CCCC--C-----------CCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCc
Q 038101 232 E-IGG-----------NGDI--P-----------HPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKL 283 (660)
Q Consensus 232 e-Ia~-----------~~~i--p-----------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgL 283 (660)
. +.. .... . .+++.. .+++..||+|||||++||++++.+|++|||||||++|
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~L 471 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDL 471 (635)
T ss_pred cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 1 110 0000 0 112321 2466889999999999999999999999999999999
Q ss_pred cHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEE-cCeEEE
Q 038101 284 EAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEML-IGGVQN 325 (660)
Q Consensus 284 D~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~-~G~I~~ 325 (660)
|+.++..+ .+.+.|||++||+..++..+||+++.+. .|++..
T Consensus 472 D~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 472 DVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 99998776 3446699999999999999999999997 788754
No 273
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.89 E-value=4.2e-23 Score=228.41 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=123.8
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN-DYK---------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~G---------------- 221 (660)
+..++++|++++|++. .+|+++ +.+|++++|+||||||||||+|+|+|++.+ +.|
T Consensus 258 ~~~l~~~~l~~~~~~~-----~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 258 EPRIVLNNGVVSYNDR-----PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred CceEEEeceEEEECCe-----eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 4468999999999865 688887 899999999999999999999999998764 222
Q ss_pred ---CeEEEEcCCCcc-c------------cCC---CC----C------------CCCCCc---cccCCCCCHHHHHHHHH
Q 038101 222 ---KRVMIVDTSSEI-G------------GNG---DI----P------------HPGIGN---ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ---krV~~Vdq~~eI-a------------~~~---~i----p------------~~~Lg~---~rrl~vLSgG~qqrv~I 263 (660)
++++|+.+...+ . ... .. . ..++.. .+++..||+|||||++|
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 412 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALI 412 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHH
Confidence 236776653211 0 000 00 0 113332 24567899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcC-CEEEEEEcChhHHHH-hcCcEEEEEcCeEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRG-IQLVATAHGVTIENL-IMNPSLEMLIGGVQN 325 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~G-vtVI~TtH~~~l~~~-i~dril~l~~G~I~~ 325 (660)
|+|++.+|++||+||||++||+.++..+ ++.| .+||++||+.+++.. +||+++++..|++..
T Consensus 413 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 413 VRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 9999999999999999999999998776 2344 579999999999876 699999999999754
No 274
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=6.8e-23 Score=202.68 Aligned_cols=159 Identities=19% Similarity=0.273 Sum_probs=124.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------RVMIV 227 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------rV~~V 227 (660)
++.+++++..|...- ..+++++ |.+|+.+.++||+||||||||+.+||+..|..|. .=++|
T Consensus 3 ~l~~~~~sl~y~g~~---~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvV 79 (259)
T COG4525 3 MLNVSHLSLSYEGKP---RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79 (259)
T ss_pred eeehhheEEecCCcc---hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeE
Confidence 456889999998761 3488888 8999999999999999999999999999998542 12444
Q ss_pred cCCCccc-----------c--CCCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 228 DTSSEIG-----------G--NGDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 228 dq~~eIa-----------~--~~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
+|..-+- + ..+++. .++.. .+.+..|||||+||+.||+|++.+|+.|++|||
T Consensus 80 FQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP 159 (259)
T COG4525 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP 159 (259)
T ss_pred eccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc
Confidence 4443210 0 011111 12222 256788999999999999999999999999999
Q ss_pred CCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEc--CeEEE
Q 038101 280 GTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLI--GGVQN 325 (660)
Q Consensus 280 gsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~--G~I~~ 325 (660)
+.+||+..++.+ ...|++++++||+.+++-.++++.+++.- |++..
T Consensus 160 fgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 160 FGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999998876 46899999999999999999999988875 35543
No 275
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.89 E-value=7.6e-23 Score=208.04 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=110.0
Q ss_pred ccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------CeEEEEcCCCcccc-------
Q 038101 184 LLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------KRVMIVDTSSEIGG------- 235 (660)
Q Consensus 184 iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------krV~~Vdq~~eIa~------- 235 (660)
+|+++ +.+|++++|+||||||||||+++|+|++.+ .| +.++|+.+...+..
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 46666 889999999999999999999999999854 33 12566665432110
Q ss_pred ----C-CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc-------CCcEEEEeCCCCCccHHHH
Q 038101 236 ----N-GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH-------MPQVIVIDEIGTKLEAMAA 288 (660)
Q Consensus 236 ----~-~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~-------~P~VLILDEPgsgLD~~a~ 288 (660)
. .... ..++.. .+.+..+|+|||||++||++++. +|++||+|||+++||+.++
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 0 0000 012221 24567899999999999999997 6799999999999999987
Q ss_pred HHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 289 STI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 289 ~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 170 ~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 170 AALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 765 34689999999999999999999999999998654
No 276
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=2.4e-22 Score=224.37 Aligned_cols=160 Identities=20% Similarity=0.219 Sum_probs=122.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE------EcCCCcc-
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMI------VDTSSEI- 233 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~------Vdq~~eI- 233 (660)
.+++.+|+++|++.. ...+|+++ +.+|++++|+|||||||||||++|+|++.|+.|. |.+ +.....+
T Consensus 21 mL~lknL~~~~~~~~--~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe-I~I~G~~~~i~~~~~l~ 97 (549)
T PRK13545 21 FDKLKDLFFRSKDGE--YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT-VDIKGSAALIAISSGLN 97 (549)
T ss_pred eeEEEEEEEecCCCc--cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE-EEECCEeeeEEeccccC
Confidence 467888988887631 12478887 8999999999999999999999999999988663 221 1000000
Q ss_pred ---------cc---CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH
Q 038101 234 ---------GG---NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM 286 (660)
Q Consensus 234 ---------a~---~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~ 286 (660)
.. ...+. ..++.. .+++..||+|||||++||+|++.+|++||||||+++||+.
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 00 00010 012222 2456789999999999999999999999999999999999
Q ss_pred HHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 287 AASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 287 a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 87664 45689999999999999999999999999998654
No 277
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.89 E-value=1.8e-22 Score=232.82 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=127.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+||+|||||||++.|+|++.|+.|
T Consensus 476 ~~I~~~~vsf~y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 476 GYVELRNITFGYSPL---EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred CeEEEEEEEEecCCC---CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 358999999999753 12588888 999999999999999999999999999998855
Q ss_pred CeEEEEcCCCccccC--------C--CCCC------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN--------G--DIPH------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~--~ip~------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.|+|++|...+... + .... + ++.. ...-..||||||||++||||++.
T Consensus 553 ~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred hheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 357888887543210 0 0000 0 1110 01224599999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||......+ .+.+.|+|++||..+.... ||+++.+.+|++...
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQR 692 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEe
Confidence 9999999999999999987765 5678999999999998764 999999999998764
No 278
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.89 E-value=8.8e-23 Score=207.53 Aligned_cols=161 Identities=22% Similarity=0.304 Sum_probs=125.6
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------- 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------- 221 (660)
+....++++|++++|+++ .+|.++ |++|+.++|+|||||||||||+.+++...|..|
T Consensus 27 ~~~~li~l~~v~v~r~gk-----~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~ 101 (257)
T COG1119 27 INEPLIELKNVSVRRNGK-----KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI 101 (257)
T ss_pred CCcceEEecceEEEECCE-----eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcch
Confidence 344568999999999988 899998 999999999999999999999999999988633
Q ss_pred ----CeEEEEcCC-------C----cc--cc---CCCCCC-----------------CCCCc--cccCCCCCHHHHHHHH
Q 038101 222 ----KRVMIVDTS-------S----EI--GG---NGDIPH-----------------PGIGN--ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 222 ----krV~~Vdq~-------~----eI--a~---~~~ip~-----------------~~Lg~--~rrl~vLSgG~qqrv~ 262 (660)
++||++... + ++ .+ .-++.+ .++.. .+.+..||-|||||++
T Consensus 102 ~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 102 FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHH
Confidence 123332210 0 00 00 001111 01111 2567889999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH-------H--hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI-------A--QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~--~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||||++++|++||||||++|||..++..+ + ..+.++|++||..+++-...++++.+..|++.+
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 99999999999999999999999998765 2 237899999999999888899999999999754
No 279
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=3e-22 Score=200.49 Aligned_cols=137 Identities=23% Similarity=0.325 Sum_probs=109.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEEEcCCCcccc---C--------C------C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------KRVMIVDTSSEIGG---N--------G------D 238 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------krV~~Vdq~~eIa~---~--------~------~ 238 (660)
+++|++++|+|+||||||||+++|+|++.++.| ++++|+++...+.. . . .
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 678999999999999999999999999988754 24778777543210 0 0 0
Q ss_pred C--CC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hhc
Q 038101 239 I--PH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQR 294 (660)
Q Consensus 239 i--p~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~ 294 (660)
+ +. .++.. .+.+..+|+|||||++|+++++++|++||+|||+++||+.++..+ .+.
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 0 00 12221 134567999999999999999999999999999999999997775 346
Q ss_pred CCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 295 GIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 295 GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|.|+|++||+.+++..+||+++.+ .|++...
T Consensus 163 ~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~ 193 (223)
T TIGR03771 163 GTAILMTTHDLAQAMATCDRVVLL-NGRVIAD 193 (223)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEee
Confidence 999999999999999999999988 7988654
No 280
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=4e-22 Score=207.81 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=121.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGG 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~ 235 (660)
.++++|++++ + . .+|+++ +.+|++++|+||||||||||+++|+|++.++.|. +|+|+++...+..
T Consensus 39 ~l~i~nls~~-~-~-----~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 39 NLFFSNLCLV-G-A-----PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred eEEEEEEEEe-c-c-----cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc
Confidence 4789999985 2 2 578887 8999999999999999999999999999988663 4778887653321
Q ss_pred C--------C-CCCC---------CCCCc-------------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 236 N--------G-DIPH---------PGIGN-------------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 236 ~--------~-~ip~---------~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
. . .... .++.. .+....+|+||+||++||++++.+|++||+|||+++||
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 0 0 0000 01110 01235799999999999999999999999999999999
Q ss_pred HHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 285 AMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 285 ~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+.++..+ ...|.+||++||+...+. .||+++.+..|++...
T Consensus 192 ~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 192 VFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEE
Confidence 9987654 134899999999999875 7999999999998653
No 281
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=5.1e-22 Score=247.82 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=129.9
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------C
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----------------K 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----------------k 222 (660)
..++++||+++|++. ...+++++ +.+|++++|+|||||||||||++|+|++.|+.| +
T Consensus 927 ~~L~I~nLsK~y~~~---~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS---GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred ceEEEEeEEEEecCC---CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhh
Confidence 368899999999521 12688888 899999999999999999999999999998754 2
Q ss_pred eEEEEcCCCcccc-------------CCCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIGG-------------NGDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa~-------------~~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
.+++++|...+.. ..+.+ ..++.. .++...||+|||||++||+|++.+|+||
T Consensus 1004 ~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 3677776543210 01111 113332 2456789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 275 VIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||||||++||+.+++.++ +.|.+||++||++++++.+||+++.+.+|++...
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~ 1141 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCS 1141 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999988762 3589999999999999999999999999998764
No 282
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=1.9e-22 Score=205.93 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=106.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCCccccC-----------CCC-----------C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------KRVMIVDTSSEIGGN-----------GDI-----------P 240 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------krV~~Vdq~~eIa~~-----------~~i-----------p 240 (660)
+.+|++++|+|||||||||||++|+|++.|+.| .+|+|+++....... ... .
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~ 101 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAK 101 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHH
Confidence 678999999999999999999999999988755 367787775432100 000 0
Q ss_pred CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHH
Q 038101 241 HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENL 310 (660)
Q Consensus 241 ~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~ 310 (660)
..++.. .+.+..||+||+||++||++++.+|++||+|||+++||+.++..+ + +.|.+||++||+..++..
T Consensus 102 ~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~ 181 (246)
T cd03237 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDY 181 (246)
T ss_pred HcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 112221 245678999999999999999999999999999999999997765 2 348999999999999999
Q ss_pred hcCcEEEEEcCe
Q 038101 311 IMNPSLEMLIGG 322 (660)
Q Consensus 311 i~dril~l~~G~ 322 (660)
+||+++.+..+.
T Consensus 182 ~~d~i~~l~~~~ 193 (246)
T cd03237 182 LADRLIVFEGEP 193 (246)
T ss_pred hCCEEEEEcCCC
Confidence 999999886543
No 283
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.9e-22 Score=223.43 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=124.6
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
+..++++||++++ . .+|+++ +.+|++++|+||||||||||+++|+|++.|+.|.
T Consensus 248 ~~~i~~~~l~~~~--~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 320 (491)
T PRK10982 248 EVILEVRNLTSLR--Q-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEA 320 (491)
T ss_pred CcEEEEeCccccc--C-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHH
Confidence 3468899999873 2 578877 9999999999999999999999999999887442
Q ss_pred ---eEEEEcCCCc----ccc-----------C------CC-CC-------------CCCCC---ccccCCCCCHHHHHHH
Q 038101 223 ---RVMIVDTSSE----IGG-----------N------GD-IP-------------HPGIG---NARRMQVPNSEMQHKV 261 (660)
Q Consensus 223 ---rV~~Vdq~~e----Ia~-----------~------~~-ip-------------~~~Lg---~~rrl~vLSgG~qqrv 261 (660)
.++|+++... +.. . .+ .. ..++. ..+.+..||+|||||+
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv 400 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKV 400 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHH
Confidence 1455554321 000 0 00 00 01232 1345678999999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||++++.+|+||||||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+..|++...+
T Consensus 401 ~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 401 IIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999997765 467999999999999999999999999999986543
No 284
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.2e-22 Score=207.31 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=133.7
Q ss_pred eEEEEeEEEEECccc--cc--cccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC
Q 038101 164 KGAIIGLTCRVGRAV--SG--SANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN 236 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v--~G--~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~ 236 (660)
.++++||++.|.-.. .. ...+++++ |.+|++++|+|.+|||||||-|+|.|++.|+.|. |.|-... +...
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~--i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKD--ITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcc--hhhc
Confidence 578999999995421 11 23677887 9999999999999999999999999999999884 4443221 1100
Q ss_pred C----------CCCCCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcC
Q 038101 237 G----------DIPHPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRG 295 (660)
Q Consensus 237 ~----------~ip~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~G 295 (660)
. .+...++.. .|....+||||+||+.||||++.+|++|++|||+++||...+..+ .+.|
T Consensus 81 ~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 81 SKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred chhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 0 000112221 257789999999999999999999999999999999999776554 4679
Q ss_pred CEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHHHhhcCCCc
Q 038101 296 IQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTVLERKGPST 350 (660)
Q Consensus 296 vtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~Iler~~~p~ 350 (660)
.+.+++|||+..+..+||++.+|..|+|+..+ ..++++..+.+|.
T Consensus 161 lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g----------~~~~~~~~p~HpY 205 (268)
T COG4608 161 LTYLFISHDLSVVRYISDRIAVMYLGKIVEIG----------PTEEVFSNPLHPY 205 (268)
T ss_pred CeEEEEEEEHHhhhhhcccEEEEecCceeEec----------CHHHHhhCCCCHH
Confidence 99999999999999999999999999998754 3455565554444
No 285
>PLN03073 ABC transporter F family; Provisional
Probab=99.88 E-value=4.7e-22 Score=230.40 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=127.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSE 232 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~e 232 (660)
..+++++|+++|+.. ..+|+++ |..|++++|+||||||||||||+|+|++.|+.| .+|+|++|...
T Consensus 507 ~~L~~~~ls~~y~~~----~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~ 582 (718)
T PLN03073 507 PIISFSDASFGYPGG----PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV 582 (718)
T ss_pred ceEEEEeeEEEeCCC----CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc
Confidence 468999999999642 1478887 899999999999999999999999999998765 25788877531
Q ss_pred cc--cC--------CCCC------------CCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHH
Q 038101 233 IG--GN--------GDIP------------HPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMA 287 (660)
Q Consensus 233 Ia--~~--------~~ip------------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a 287 (660)
.. .. ...+ ..++.. .+.+..||+|||||++||++++++|++|||||||++||+.+
T Consensus 583 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s 662 (718)
T PLN03073 583 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDA 662 (718)
T ss_pred ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 10 00 0011 123431 24678899999999999999999999999999999999998
Q ss_pred HHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 288 ASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 288 ~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+..+ .+.+.+||++||+..++..+||+++.+.+|++.
T Consensus 663 ~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 663 VEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 7776 333459999999999999999999999999875
No 286
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.88 E-value=3.6e-22 Score=224.86 Aligned_cols=160 Identities=14% Similarity=0.194 Sum_probs=124.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.| +
T Consensus 341 ~i~~~~vsf~y~~~---~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 341 DIEFRNVTFTYPGK---EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred eEEEEEEEEecCCC---CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHh
Confidence 58999999999642 12588888 899999999999999999999999999999755 3
Q ss_pred eEEEEcCCCccccC--------CCCCC------------CCCC---------ccccC----CCCCHHHHHHHHHHHHHcc
Q 038101 223 RVMIVDTSSEIGGN--------GDIPH------------PGIG---------NARRM----QVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~~ip~------------~~Lg---------~~rrl----~vLSgG~qqrv~IA~aL~~ 269 (660)
.|+|++|...+... +..+. .++. -...+ ..+||||+||++||||+.+
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 56777776533210 00000 0110 00111 3599999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||+||||++||+.....+ ...+.|+|++||+.+... .||+++.+.+|++...+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIVERG 560 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEeC
Confidence 9999999999999999987765 235799999999998765 59999999999987643
No 287
>PRK13409 putative ATPase RIL; Provisional
Probab=99.88 E-value=2.5e-22 Score=228.27 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=122.5
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCccc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIG 234 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa 234 (660)
..+++.+++++|++. .|+++ +.+|++++|+||||||||||||+|+|++.|+.|. +++|++|.....
T Consensus 339 ~~l~~~~ls~~~~~~------~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~ 412 (590)
T PRK13409 339 TLVEYPDLTKKLGDF------SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPD 412 (590)
T ss_pred eEEEEcceEEEECCE------EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCC
Confidence 458999999999763 25544 8999999999999999999999999999988763 467777754321
Q ss_pred cC-----------CCC----------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH
Q 038101 235 GN-----------GDI----------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI 291 (660)
Q Consensus 235 ~~-----------~~i----------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i 291 (660)
.. ... ..+++.. .+.+..||+|||||++||++++++|++|||||||++||+.++..+
T Consensus 413 ~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l 492 (590)
T PRK13409 413 YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV 492 (590)
T ss_pred CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 00 000 0112221 256788999999999999999999999999999999999997775
Q ss_pred -------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 292 -------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 292 -------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
+ +.|.+||++||+..++..+||+++.+. |++
T Consensus 493 ~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~ 531 (590)
T PRK13409 493 AKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEP 531 (590)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccc
Confidence 2 358999999999999999999999885 454
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.8e-22 Score=222.86 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.+++++++++ .+++++ +.+|++++|+|||||||||||++|+|++.++.|.
T Consensus 257 ~l~~~~~~~~---------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 257 RLRLDGLKGP---------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred EEEEeccccC---------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHh
Confidence 4667777632 467777 8999999999999999999999999999876431
Q ss_pred -eEEEEcCCCc---ccc---------CC--------C--CC-------------CCCCC-c--cccCCCCCHHHHHHHHH
Q 038101 223 -RVMIVDTSSE---IGG---------NG--------D--IP-------------HPGIG-N--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 223 -rV~~Vdq~~e---Ia~---------~~--------~--ip-------------~~~Lg-~--~rrl~vLSgG~qqrv~I 263 (660)
.++|++|... +.. .+ + .. ..++. . .+++..||+|||||++|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 2456655421 100 00 0 00 01331 1 24567899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEec
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTL 328 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~l 328 (660)
|++++.+|++|||||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+..|++...+.
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 9999999999999999999999998775 4569999999999999999999999999999876553
No 289
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=2.1e-22 Score=194.47 Aligned_cols=152 Identities=24% Similarity=0.351 Sum_probs=121.8
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
++++|++|.||.. .+|.|+ .+.|+.+.++||+|+|||||+|.|.-+.-|..|.
T Consensus 3 irv~~in~~yg~~-----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i 77 (242)
T COG4161 3 IQLNGINCFYGAH-----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77 (242)
T ss_pred eEEcccccccccc-----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHH
Confidence 6789999999987 888888 6889999999999999999999999777776553
Q ss_pred -----eEEEEcCCCccccCCCCCCC--------------CCCc--------------------cccCCCCCHHHHHHHHH
Q 038101 223 -----RVMIVDTSSEIGGNGDIPHP--------------GIGN--------------------ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 223 -----rV~~Vdq~~eIa~~~~ip~~--------------~Lg~--------------------~rrl~vLSgG~qqrv~I 263 (660)
.||.|.+... .+||+ ++.. .+..-.+|||||||++|
T Consensus 78 ~~lr~~vgmvfqqy~-----lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai 152 (242)
T COG4161 78 RDLRRNVGMVFQQYN-----LWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI 152 (242)
T ss_pred HHHHHhhhhhhhhhc-----cCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence 2233222211 13432 1111 02223589999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAAST-------IAQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~-------i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||++|+|+||++||||++|||+-... +...|+|-+++||..+.+..++.+++.|..|+|+..
T Consensus 153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 999999999999999999999986443 467899999999999999999999999999998764
No 290
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.88 E-value=5.7e-22 Score=227.95 Aligned_cols=160 Identities=16% Similarity=0.261 Sum_probs=126.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|+.. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.| +
T Consensus 451 ~I~~~nvsf~Y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 451 AIEVDRVTFRYRPD---GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred eEEEEEEEEEcCCC---CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHh
Confidence 58899999999632 12588988 999999999999999999999999999999855 3
Q ss_pred eEEEEcCCCccccC--------CC-CCC---------CCCC---------ccc----cCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 RVMIVDTSSEIGGN--------GD-IPH---------PGIG---------NAR----RMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~~-ip~---------~~Lg---------~~r----rl~vLSgG~qqrv~IA~aL~~~P 271 (660)
.|++++|...+... +. ... .++. -.. .-..+|||||||++||||++.+|
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 57888877654210 00 100 0111 001 12358999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 272 QVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++||+||||++||+...+.+ .+.+.|+|++||..+... .+|+++.+.+|++...+
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQG 666 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999997776 455899999999998876 59999999999987643
No 291
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=2.9e-22 Score=196.29 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=104.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------eEEEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------RVMIV 227 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------rV~~V 227 (660)
+++++++++|++. .++. + +++|++++|+|+||||||||+++|+|++.++.|. .++|+
T Consensus 2 l~~~~l~~~~~~~-----~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQK-----NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYI 75 (195)
T ss_pred eEEEEeeEEECCc-----EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEec
Confidence 6789999999754 3343 5 8999999999999999999999999999888663 12333
Q ss_pred cCCCccccC----------CCC-----------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 228 DTSSEIGGN----------GDI-----------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 228 dq~~eIa~~----------~~i-----------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
.+...+... ... ...++.. .+....+|+||+||++|+++++.+|++||+|||+++||
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 332111000 000 0012221 23557799999999999999999999999999999999
Q ss_pred HHHHHHH-------HhcCCEEEEEEcChhHHHH
Q 038101 285 AMAASTI-------AQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 285 ~~a~~~i-------~~~GvtVI~TtH~~~l~~~ 310 (660)
+.++..+ .+.|.++|++||+.+.+..
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 9997765 3568999999999986543
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.88 E-value=2.5e-22 Score=223.16 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=121.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++|+++ .+++++ +.+|++++|+|||||||||||++|+|++.|+.|
T Consensus 257 ~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~ 326 (501)
T PRK10762 257 RLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLA 326 (501)
T ss_pred EEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHH
Confidence 466777764 246766 899999999999999999999999999987633
Q ss_pred CeEEEEcCCCc---c-cc-----------C---CC----CC-------------CCCCC---ccccCCCCCHHHHHHHHH
Q 038101 222 KRVMIVDTSSE---I-GG-----------N---GD----IP-------------HPGIG---NARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 krV~~Vdq~~e---I-a~-----------~---~~----ip-------------~~~Lg---~~rrl~vLSgG~qqrv~I 263 (660)
+.|+|+++... + .. . .. +. ..++. ..+++..||+|||||++|
T Consensus 327 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~l 406 (501)
T PRK10762 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAI 406 (501)
T ss_pred CCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHH
Confidence 13778877631 1 10 0 00 00 01332 124567899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++++.+|++||+||||++||+.++..+ .+.|.+||++||+.+++..+||+++.+..|++...+
T Consensus 407 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 407 ARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999998765 456999999999999999999999999999986544
No 293
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.88 E-value=1.5e-21 Score=220.73 Aligned_cols=159 Identities=17% Similarity=0.282 Sum_probs=126.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.+++++++++|+.. ..+|+++ +++|+.++|+|+||||||||++.|+|++.|..| +
T Consensus 334 ~I~~~~vsf~y~~~----~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 334 AVEFDDVSFSYDNS----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred eEEEEEEEEEeCCC----CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 58999999999642 1588888 899999999999999999999999999998754 3
Q ss_pred eEEEEcCCCccccC--------C--CCCC------------------C--CCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------G--DIPH------------------P--GIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~--~ip~------------------~--~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.|+|++|...+... + .... . ++... ..-..+||||+||++|||+++++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 67888887644210 0 1100 0 11100 11235999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+|||+||||++||+.....+. ..++|+|++||+.+... .+|+++.+.+|++...+
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVESG 551 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEEeC
Confidence 9999999999999999987762 25799999999998765 69999999999987654
No 294
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.87 E-value=8.5e-22 Score=222.63 Aligned_cols=160 Identities=17% Similarity=0.225 Sum_probs=126.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..+++++++++|+.. ..+|+++ +++|+.++|+|++|||||||++.|+|++.|+.|
T Consensus 339 ~~i~~~~v~f~y~~~----~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 339 GRIDIDNVSFAYRDD----NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred CeEEEEEEEEEeCCC----CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHH
Confidence 358999999999742 2588888 999999999999999999999999999999855
Q ss_pred CeEEEEcCCCccccC--------C-CCCC---------C-----------CCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 KRVMIVDTSSEIGGN--------G-DIPH---------P-----------GIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~-~ip~---------~-----------~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
++|+|++|...+... + .... . |+... ..-..+||||+||++||||++.+
T Consensus 415 ~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~ 494 (592)
T PRK10790 415 QGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQT 494 (592)
T ss_pred hheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 347788777544210 0 0000 0 11100 12245999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+|||+||||++||+...+.+ ...++|+|++||..+... .||+++.+.+|++...+
T Consensus 495 ~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 495 PQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQG 556 (592)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEc
Confidence 999999999999999997776 235799999999998766 59999999999987654
No 295
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=6.3e-22 Score=203.40 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=113.3
Q ss_pred EeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE----------EEcCCC----
Q 038101 168 IGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM----------IVDTSS---- 231 (660)
Q Consensus 168 ~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~----------~Vdq~~---- 231 (660)
.+|+++|+... .+++++ +.+|++++|+|||||||||||++|+|++.|+.|+ |. .++...
T Consensus 4 ~~~~~~y~~~~----~~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~-I~~~~~~~~~~~~~~g~~~~~~ 78 (255)
T cd03236 4 DEPVHRYGPNS----FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGK-FDDPPDWDEILDEFRGSELQNY 78 (255)
T ss_pred cCcceeecCcc----hhhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce-EeeccccchhhhhccCchhhhh
Confidence 47889997541 366666 8999999999999999999999999999998774 32 111100
Q ss_pred -------c--ccc----CCCCC-------------------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 232 -------E--IGG----NGDIP-------------------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 232 -------e--Ia~----~~~ip-------------------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
. ++. ....+ ..++.. .+....+|+|||||++||++++.+|
T Consensus 79 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 79 FTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 0 000 00001 012221 1345679999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+++|+|||+++||+.++..+ .+.|.+||++||+.+++..+||+++.+. |++.
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence 99999999999999986654 3468999999999999998999998884 5553
No 296
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=7.6e-22 Score=196.87 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=104.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccccC-CCCCC-------------------------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS-EIGGN-GDIPH------------------------- 241 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~-eIa~~-~~ip~------------------------- 241 (660)
+++|++++|+||||||||||+++|+|++.++.|. |..++... .++.. ..++.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~-i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 88 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD-FIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDGDEFSHFC 88 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCC-EEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6779999999999999999999999999998885 32121110 01000 00000
Q ss_pred ---CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHH
Q 038101 242 ---PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 242 ---~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~ 310 (660)
.++.. .+.+..+|+|||||++||++++++|++||+|||++++|+.++..+ ...+.++|++||+..++..
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~ 168 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKE 168 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHH
Confidence 01111 235678999999999999999999999999999999999986654 1245789999999999999
Q ss_pred hcCcEEEEEcCeEEEE
Q 038101 311 IMNPSLEMLIGGVQNV 326 (660)
Q Consensus 311 i~dril~l~~G~I~~V 326 (660)
+||+++.+..|++...
T Consensus 169 ~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 169 HCHAFGVLLHGKITMC 184 (213)
T ss_pred hcCeeEEEECCeEEEe
Confidence 9999999999998753
No 297
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=4.8e-22 Score=221.72 Aligned_cols=154 Identities=17% Similarity=0.231 Sum_probs=121.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++|+++ .+|+++ +.+|++++|+||||||||||||+|+|++.|+.|
T Consensus 268 ~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 268 VLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred eEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 577888873 136666 899999999999999999999999999987643
Q ss_pred CeEEEEcCCCc---cc-cC-----------C--CC---------------CCCCCC-c--cccCCCCCHHHHHHHHHHHH
Q 038101 222 KRVMIVDTSSE---IG-GN-----------G--DI---------------PHPGIG-N--ARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 222 krV~~Vdq~~e---Ia-~~-----------~--~i---------------p~~~Lg-~--~rrl~vLSgG~qqrv~IA~a 266 (660)
..++|+++... +. .. . .. ...++. . .+++..||+|||||++||++
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~a 417 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKC 417 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHH
Confidence 13677766421 10 00 0 00 011332 1 24567899999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++.+|++|||||||++||+.++..+ ++.|.+||++||+.+++..+||+++.+.+|++...+
T Consensus 418 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 418 LEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGAL 485 (510)
T ss_pred HhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999999999999999999998775 346999999999999999999999999999987654
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=6e-22 Score=193.70 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=100.0
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------eEEEEcCCCccccCCCCCCCCCC-
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------------RVMIVDTSSEIGGNGDIPHPGIG- 245 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------------rV~~Vdq~~eIa~~~~ip~~~Lg- 245 (660)
.+|+++ +.+|+.++|+||||||||||||+|.+ +.|. +++|+++... +...++.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~------l~~~~L~~ 78 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQF------LIDVGLGY 78 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHH------HHHcCCCc
Confidence 456665 88899999999999999999999963 1221 2444443111 1112222
Q ss_pred --ccccCCCCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCc
Q 038101 246 --NARRMQVPNSEMQHKVLIEAVENHM--PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 246 --~~rrl~vLSgG~qqrv~IA~aL~~~--P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dr 314 (660)
..++...+|+|||||++||++++++ |++||+|||+++||+..+..+ .+.|.+||++||+.+++. .||+
T Consensus 79 ~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~ 157 (176)
T cd03238 79 LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADW 157 (176)
T ss_pred cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCE
Confidence 1346788999999999999999999 999999999999999987765 336999999999999875 6999
Q ss_pred EEEEEcCe
Q 038101 315 SLEMLIGG 322 (660)
Q Consensus 315 il~l~~G~ 322 (660)
++.+..|.
T Consensus 158 i~~l~~g~ 165 (176)
T cd03238 158 IIDFGPGS 165 (176)
T ss_pred EEEECCCC
Confidence 99997765
No 299
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.87 E-value=1.1e-21 Score=222.17 Aligned_cols=158 Identities=16% Similarity=0.206 Sum_probs=124.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ..+++++ +++|+.++|+||||||||||++.|+|++.|+.| +
T Consensus 334 ~i~~~~v~~~y~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 409 (585)
T TIGR01192 334 AVEFRHITFEFANS----SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK 409 (585)
T ss_pred eEEEEEEEEECCCC----CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHh
Confidence 58899999999753 1578887 899999999999999999999999999998755 2
Q ss_pred eEEEEcCCCccccC-------CCCCC---------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN-------GDIPH---------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------~~ip~---------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.+++++|...+... .+.+. . ++.. ...-..+|+|||||++||||++.+
T Consensus 410 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~ 489 (585)
T TIGR01192 410 SIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN 489 (585)
T ss_pred heEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 46677776533210 00000 0 1110 022346999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||+...+.+ ...|.|+|++||+.+... .||+++.+.+|++...
T Consensus 490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEK 550 (585)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEE
Confidence 999999999999999998776 235899999999999885 5999999999998654
No 300
>PLN03073 ABC transporter F family; Provisional
Probab=99.87 E-value=1.3e-21 Score=226.89 Aligned_cols=156 Identities=14% Similarity=0.175 Sum_probs=124.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCCCeEEEEcCCCc-----
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL---ANDYKKRVMIVDTSSE----- 232 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL---~p~~GkrV~~Vdq~~e----- 232 (660)
.++++|++++|+.. .+|+++ |..|+.++|+||||||||||||+|+|.. .|..| .|.++++...
T Consensus 177 ~I~i~nls~~y~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g-~I~~~~Q~~~g~~~t 250 (718)
T PLN03073 177 DIHMENFSISVGGR-----DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNC-QILHVEQEVVGDDTT 250 (718)
T ss_pred eEEEceEEEEeCCC-----EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCC-EEEEEeccCCCCCCC
Confidence 58899999999876 688888 9999999999999999999999999864 23333 5777665310
Q ss_pred -------------------cccC--------------------CCCCC--------------------------------
Q 038101 233 -------------------IGGN--------------------GDIPH-------------------------------- 241 (660)
Q Consensus 233 -------------------Ia~~--------------------~~ip~-------------------------------- 241 (660)
++.. .+.+.
T Consensus 251 ~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~ 330 (718)
T PLN03073 251 ALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAG 330 (718)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 0000 00010
Q ss_pred CCCC---ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCc
Q 038101 242 PGIG---NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 242 ~~Lg---~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dr 314 (660)
.++. ..+.+..||+|||||++||++++++|++|||||||++||+.++..+ .+.|.|||++||+.+++..+||+
T Consensus 331 lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 331 LSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred CCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 1111 1245678999999999999999999999999999999999998876 45689999999999999999999
Q ss_pred EEEEEcCeEEE
Q 038101 315 SLEMLIGGVQN 325 (660)
Q Consensus 315 il~l~~G~I~~ 325 (660)
++.+..|++..
T Consensus 411 i~~l~~g~i~~ 421 (718)
T PLN03073 411 ILHLHGQKLVT 421 (718)
T ss_pred EEEEECCEEEE
Confidence 99999999864
No 301
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.87 E-value=1.9e-21 Score=224.44 Aligned_cols=158 Identities=14% Similarity=0.252 Sum_probs=125.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ..+|+++ +++|+.++|+||||||||||++.|+|++.|+.| +
T Consensus 473 ~I~~~~vsf~y~~~----~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 548 (708)
T TIGR01193 473 DIVINDVSYSYGYG----SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 (708)
T ss_pred cEEEEEEEEEcCCC----CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHH
Confidence 58899999999732 2688888 999999999999999999999999999999855 3
Q ss_pred eEEEEcCCCccccC--------C---CCCC---------CCC---------Ccc----ccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 RVMIVDTSSEIGGN--------G---DIPH---------PGI---------GNA----RRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~---~ip~---------~~L---------g~~----rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.|+|++|...+... + .... .++ |-. ..-..+|||||||++||||+++
T Consensus 549 ~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 549 FINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred heEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 57888887644210 1 1110 011 000 1224589999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH----H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI----A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i----~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||+.....+ . ..|.|+|++||..+... .||+++.+.+|++...
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~ 689 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQ 689 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEEE
Confidence 9999999999999999987765 2 25799999999999774 6999999999998654
No 302
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=2e-21 Score=219.18 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=122.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|+++.|... ..+|+++ +++|+.++|+||+|||||||++.|+|++ |..| +
T Consensus 349 ~i~~~~vsf~~~~~----~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~ 423 (588)
T PRK11174 349 TIEAEDLEILSPDG----KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRK 423 (588)
T ss_pred eEEEEeeEEeccCC----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHh
Confidence 58899999766422 2688888 8999999999999999999999999999 7654 2
Q ss_pred eEEEEcCCCccccC--------C--CCCC------------------C--CCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------G--DIPH------------------P--GIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~--~ip~------------------~--~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.|+||+|...+... + +... + |+... .+=..||||||||++||||++.+
T Consensus 424 ~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 424 HLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred heEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 57888887644211 1 0100 0 11100 12235999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||....+.+ ...+.|+|++||..+... .+|+++.+.+|++...
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeec
Confidence 999999999999999998776 236899999999998775 5999999999998653
No 303
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.4e-21 Score=216.29 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=127.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
+.++++|++|+||.. .+|+++ +.+||+++|+|.||||||||+|.|+|.+.|+.|.
T Consensus 7 ~ll~~~~i~K~FggV-----~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~ 81 (500)
T COG1129 7 PLLELRGISKSFGGV-----KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81 (500)
T ss_pred ceeeeecceEEcCCc-----eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHH
Confidence 357899999999987 899988 9999999999999999999999999999999662
Q ss_pred --eEEEEcCCCccc---------cCCCCCCC---------------------CC--CccccCCCCCHHHHHHHHHHHHHc
Q 038101 223 --RVMIVDTSSEIG---------GNGDIPHP---------------------GI--GNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 223 --rV~~Vdq~~eIa---------~~~~ip~~---------------------~L--g~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
.|.+|.|...+. +.+..|.. ++ .....+..||.++||.|.||+|+.
T Consensus 82 ~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred hCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh
Confidence 123333321110 01111111 11 122456789999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
.+++||||||||+.|+......+ +++|+++|++||.++++..+||++.++.+|++..
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 99999999999999999886654 7899999999999999999999999999999754
No 304
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.87 E-value=3e-21 Score=223.44 Aligned_cols=161 Identities=16% Similarity=0.265 Sum_probs=125.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ....+|+++ +++|+.++|+||||||||||++.|+|++.|+.| +
T Consensus 478 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 478 LIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred eEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 58999999999642 012588888 999999999999999999999999999999865 2
Q ss_pred eEEEEcCCCccccC----------CCCCC------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN----------GDIPH------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~----------~~ip~------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+|++++|...+... .+.+. . ++.. ...-..+|||||||++||||++++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 57788776543210 00110 0 1110 012246999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHHH----hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTIA----QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i~----~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+|||+||||++||+.....+. ..+.|+|++||..+... .+|+++.+.+|++...+
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMG 695 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEee
Confidence 9999999999999999877663 35799999999998875 59999999999987643
No 305
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=2e-21 Score=219.62 Aligned_cols=161 Identities=15% Similarity=0.201 Sum_probs=126.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+||||||||||++.|+|++.|+.|.
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 358999999999642 11588888 8999999999999999999999999999988652
Q ss_pred -eEEEEcCCCccccC-------CCCCC------------CCCCc--------c----ccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 -RVMIVDTSSEIGGN-------GDIPH------------PGIGN--------A----RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~-------~~ip~------------~~Lg~--------~----rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.|++++|...+... ...+. .++.+ . ..-..+|+|||||++|||+++.+
T Consensus 414 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 414 QAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred hheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 47777776543210 00010 01111 0 12346999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++||+||||++||+.....+ ...|.|+|++||..+... .||+++.+.+|++...+
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeC
Confidence 999999999999999997776 235899999999999876 59999999999987643
No 306
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.87 E-value=1.9e-21 Score=224.00 Aligned_cols=160 Identities=14% Similarity=0.208 Sum_probs=125.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+|+||||||||++.|+|++.|+.|
T Consensus 462 ~~I~~~~vsf~Y~~~---~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQ---ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred ceEEEEEEEEEeCCC---CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 358899999999642 12588888 999999999999999999999999999999865
Q ss_pred CeEEEEcCCCccccC--------C--CCCC------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN--------G--DIPH------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~--~ip~------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.|++++|...+... + .... + ++.. ...-..+|+|||||++||||++.
T Consensus 539 ~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 539 RNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred hccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 357888876543210 0 0000 0 1110 01224699999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||+.....+ ...+.|+|++||..+... .||+++.+.+|++.+.
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVAD 680 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEee
Confidence 9999999999999999997776 235899999999999774 6999999999998764
No 307
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.87 E-value=4.6e-22 Score=193.61 Aligned_cols=125 Identities=21% Similarity=0.369 Sum_probs=95.3
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC--------------------eEEEEcCCCc--cccC-
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK--------------------RVMIVDTSSE--IGGN- 236 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk--------------------rV~~Vdq~~e--Ia~~- 236 (660)
.+|+++ +.+|++++|+||||||||||+++|+|++.++.|. .++|+++... +...
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 456655 8889999999999999999999999999887541 2566665531 1100
Q ss_pred -----------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 237 -----------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 237 -----------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
.... ..++.. .+++..+|+|||||++||+|++++|++||+|||+++||+..+..
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0000 012221 24567899999999999999999999999999999999999777
Q ss_pred H-------HhcCCEEEEEEcChhH
Q 038101 291 I-------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 291 i-------~~~GvtVI~TtH~~~l 307 (660)
+ .+.|.+||++||+.++
T Consensus 166 ~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 166 MLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHcCCEEEEEeecccc
Confidence 5 3468999999999864
No 308
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.87 E-value=1.1e-21 Score=207.88 Aligned_cols=131 Identities=21% Similarity=0.299 Sum_probs=103.5
Q ss_pred EEcCCCCcHHHHHHHHHhccccCCC----------------CeEEEEcCCCccccC-------------CCCC-------
Q 038101 197 FIGPPGVGKTTIIREIARVLANDYK----------------KRVMIVDTSSEIGGN-------------GDIP------- 240 (660)
Q Consensus 197 IlGPnGsGKTTLLR~IaglL~p~~G----------------krV~~Vdq~~eIa~~-------------~~ip------- 240 (660)
|+||||||||||||+|+|++.++.| +.++|+++...+... ...+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999988754 236677665432100 0010
Q ss_pred ------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcC
Q 038101 241 ------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHG 304 (660)
Q Consensus 241 ------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~ 304 (660)
..++.. .+.+..||+|||||++||++++.+|++||||||+++||+..+..+ .+.|.|+|++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 012221 245678999999999999999999999999999999999987775 2348999999999
Q ss_pred hhHHHHhcCcEEEEEcCeEEEEe
Q 038101 305 VTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 305 ~~l~~~i~dril~l~~G~I~~V~ 327 (660)
.+++..+||+++.+..|++...+
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~g 183 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIG 183 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999987643
No 309
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.87 E-value=2.1e-21 Score=217.68 Aligned_cols=159 Identities=19% Similarity=0.269 Sum_probs=124.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ...+++++ +++|+.++|+||||||||||++.|+|++.|+.| +
T Consensus 316 ~i~~~~v~~~y~~~---~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~ 392 (544)
T TIGR01842 316 HLSVENVTIVPPGG---KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGK 392 (544)
T ss_pred eEEEEEEEEEcCCC---CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhh
Confidence 58999999999532 12578888 899999999999999999999999999998855 2
Q ss_pred eEEEEcCCCccccC--------CC--CCC------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------GD--IPH------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~~--ip~------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.+++++|...+... +. ... . ++.. ..+-..+|+|||||++||||++++
T Consensus 393 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 393 HIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred heEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 46777776533210 00 000 0 1110 013356999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHHH-------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTIA-------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i~-------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||+.....+. ..|.|+|++||+.+... .||+++.+.+|++...
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~~ 534 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIARF 534 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEee
Confidence 9999999999999999877661 25899999999998764 6999999999998654
No 310
>PLN03211 ABC transporter G-25; Provisional
Probab=99.86 E-value=1.1e-21 Score=225.66 Aligned_cols=157 Identities=21% Similarity=0.294 Sum_probs=123.8
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC--CC--------------CeEEE
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND--YK--------------KRVMI 226 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~--~G--------------krV~~ 226 (660)
.+.+++++|++. .+|+++ +++|++++|+|||||||||||++|+|.+.++ .| ++++|
T Consensus 70 ~~~~l~~~~~~~-----~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~y 144 (659)
T PLN03211 70 KISDETRQIQER-----TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGF 144 (659)
T ss_pred ccccccccCCCC-----eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEE
Confidence 467788888765 789988 9999999999999999999999999998763 22 34788
Q ss_pred EcCCCccccC------------CCCC-----------------CCCCCcc-------ccCCCCCHHHHHHHHHHHHHccC
Q 038101 227 VDTSSEIGGN------------GDIP-----------------HPGIGNA-------RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 227 Vdq~~eIa~~------------~~ip-----------------~~~Lg~~-------rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+.|...+... ...+ ..++... +....+|+|||||++||++++++
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 8776432110 0011 0133221 23457999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChh-HHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVT-IENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~-l~~~i~dril~l~~G~I~~V~ 327 (660)
|+||++||||+|||+.++..+ ++.|.|||+++|+.+ .+..++|+++.+..|++.+.+
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G 289 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEEC
Confidence 999999999999999997765 347999999999998 467889999999999987643
No 311
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=5e-21 Score=214.72 Aligned_cols=161 Identities=15% Similarity=0.213 Sum_probs=125.7
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|.... ..+++++ +++|+.++|+|+||||||||++.|+|++.|..|
T Consensus 329 ~~i~~~~v~f~y~~~~---~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRD---RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred CeEEEEEEEEEcCCCC---CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 3588999999996420 1578887 899999999999999999999999999998755
Q ss_pred CeEEEEcCCCccccC--------C---CCCC---------CCCCc---------cc----cCCCCCHHHHHHHHHHHHHc
Q 038101 222 KRVMIVDTSSEIGGN--------G---DIPH---------PGIGN---------AR----RMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~---~ip~---------~~Lg~---------~r----rl~vLSgG~qqrv~IA~aL~ 268 (660)
+.|+|++|...+... + .... .++.. .. .-..+|||||||++|||+++
T Consensus 406 ~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred hhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 247788877654311 1 1110 01110 01 11358999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
.+|++||+||||++||......+. ..+.|+|++||+.... ..||+++.+.+|++...+
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERG 549 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeC
Confidence 999999999999999999988762 3579999999999876 469999999999986543
No 312
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.86 E-value=2.6e-21 Score=222.91 Aligned_cols=161 Identities=16% Similarity=0.269 Sum_probs=125.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|++++|+.. ...+++++ +++|+.++|+|+||||||||++.|+|++.|+.|.
T Consensus 454 ~~i~~~~vsf~y~~~---~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 454 GAITFENIRFRYAPD---SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 358899999999642 11578887 8999999999999999999999999999988652
Q ss_pred -eEEEEcCCCccccC--------C--CCCC------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 -RVMIVDTSSEIGGN--------G--DIPH------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~--------~--~ip~------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.|++++|...+... + .... . ++.. ...-..+|+|||||++||||++.
T Consensus 531 ~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred HhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 46677776533210 0 0000 0 1111 01234699999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||+||||++||+.....+ ...|.|+|++||..+.... ||+++.+.+|++...+
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAESG 673 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEEeC
Confidence 9999999999999999997776 2358999999999998764 9999999999987643
No 313
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=3.4e-21 Score=217.39 Aligned_cols=160 Identities=16% Similarity=0.236 Sum_probs=124.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.+++++++++|+.. ...+|+++ +++|+.++|+||||||||||++.|+|++.|+.| +
T Consensus 313 ~I~~~~v~~~y~~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 313 ELDVNIRQFTYPQT---DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred cEEEEEEEEECCCC---CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 47899999999642 12578887 899999999999999999999999999998865 2
Q ss_pred eEEEEcCCCccccC--------C--CCCC---------C-----------CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------G--DIPH---------P-----------GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~--~ip~---------~-----------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.+++++|...+... + .... . ++.. ...-..+|+||+||++||||++++
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 46777766433210 0 0000 0 1110 012346999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++||+||||++||+.....+ ...|.|+|++||+.+... .||+++.+..|++...+
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g 531 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQRG 531 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEEec
Confidence 999999999999999997776 236899999999998775 59999999999986543
No 314
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.86 E-value=4.9e-21 Score=215.06 Aligned_cols=158 Identities=14% Similarity=0.152 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ..+|+++ +++|+.++|+||||||||||++.|+|++.|+.| +
T Consensus 322 ~i~~~~v~f~y~~~----~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 322 TLELRNVTFAYQDN----GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred eEEEEEEEEEeCCC----CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 58899999999642 1588888 899999999999999999999999999988755 2
Q ss_pred eEEEEcCCCccccC----C--C---------CCCCCCCcc-----cc--CCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 223 RVMIVDTSSEIGGN----G--D---------IPHPGIGNA-----RR--MQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 223 rV~~Vdq~~eIa~~----~--~---------ip~~~Lg~~-----rr--l~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
.+++++|...+... . . +...+++.. .. -..+|||||||++||||++.+|++||+||||
T Consensus 398 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t 477 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA 477 (547)
T ss_pred heEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 46777765432110 0 0 001122211 00 1369999999999999999999999999999
Q ss_pred CCccHHHHHHH----H----hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 281 TKLEAMAASTI----A----QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 281 sgLD~~a~~~i----~----~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+.....+ . +.|.|+|++||..+.. ..||+++.+.+|++...
T Consensus 478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEECCEEEEe
Confidence 99999987764 1 2489999999999765 47999999999998764
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.86 E-value=6.8e-21 Score=214.51 Aligned_cols=162 Identities=10% Similarity=0.147 Sum_probs=121.4
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|++++|+........+|+++ +++|+.++|+||||||||||++.|+|++.|+.|.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 35889999999975200012478887 8999999999999999999999999999998662
Q ss_pred -eEEEEcCCCccccC---CC-CCC------------CCCCcc--------ccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 223 -RVMIVDTSSEIGGN---GD-IPH------------PGIGNA--------RRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~---~~-ip~------------~~Lg~~--------rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
.+++++|...+... .+ .+. .++... .....+|+|||||++||||++.+|++||+|
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 24444443322100 00 000 011110 112469999999999999999999999999
Q ss_pred CCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 278 EIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 278 EPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|||++||+.....+ ...|.|+|++||+.+... .||+++.+.+|++..
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVK 550 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 99999999987654 135899999999998764 799999999999865
No 316
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.86 E-value=1.1e-20 Score=212.55 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=125.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|.... ...+|+++ +++|+.++|+|+||||||||++.|+|++.|..| +
T Consensus 337 ~i~~~~v~f~y~~~~--~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 337 EIEFEQVNFAYPARP--DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred eEEEEEEEEECCCCC--CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHH
Confidence 588999999996420 02578888 899999999999999999999999999998755 2
Q ss_pred eEEEEcCCCccccC--------C--CCC------------------CC--CCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------G--DIP------------------HP--GIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~--~ip------------------~~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++|++|...+... + ... .. ++.. ...-..+|+||+||++||||++.+
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 46777776533210 0 000 00 1110 012346999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++||+||||++||+...+.+ ...|.|+|++||+.+... .+|+++.+.+|++...+
T Consensus 495 ~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 495 APILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEeee
Confidence 999999999999999987765 235899999999998765 69999999999987644
No 317
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=216.70 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=127.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++|++++|+.. .+...+|+++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 4 ~l~~~nl~~~y~~~-~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSG-EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCC-CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 58899999999632 1112578887 899999999999999999999999999988744
Q ss_pred ---CeEEEEcCCCcccc-C------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 ---KRVMIVDTSSEIGG-N------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 ---krV~~Vdq~~eIa~-~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+.++|+++...+.. . ...+ ..++.. .+....+|+||+||++||++++++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 23666665543210 0 0001 012221 135577999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEec
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTL 328 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~l 328 (660)
|++||+|||+++||+.+++.+ ++.|.++|++||+.+.+. .||+++.+.+|++...+.
T Consensus 163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecC
Confidence 999999999999999998776 346999999999999886 599999999999876543
No 318
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.7e-21 Score=209.25 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=129.7
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-----------------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY----------------- 220 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~----------------- 220 (660)
.+..++++|+++.|+.+ .++|+++ |.+|+.++|+|+|||||||+||+|.|++....
T Consensus 348 ~~~~I~F~dV~f~y~~k----~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPK----RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred CCCcEEEEeeEEEeCCC----CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHh
Confidence 44558999999999987 2499998 99999999999999999999999999998431
Q ss_pred CCeEEEEcCCCccccC-------CCCC------------CCCCC-------c------cccCCCCCHHHHHHHHHHHHHc
Q 038101 221 KKRVMIVDTSSEIGGN-------GDIP------------HPGIG-------N------ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 221 GkrV~~Vdq~~eIa~~-------~~ip------------~~~Lg-------~------~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
++.|++|+|+..+... ++-+ +.++. + -.+-..+|||||||++||||+.
T Consensus 424 R~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred hhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 2358899988654311 0001 00111 0 0234468999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
.+|+++++||||++||...-+++ ...|+|+|++.|+.+++. -||.|+.+.+|++...+
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~v~e~g 567 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK-DFDKIIVLDNGTVKEYG 567 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh-cCCEEEEEECCeeEEec
Confidence 99999999999999999987776 357999999999999876 59999999999997765
No 319
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.85 E-value=7.5e-21 Score=207.99 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=127.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.+++.+++|+|+.. .+.+++ +.+|++.+|+|.||+|||||+++|.|++.|+.|+
T Consensus 4 ~l~~~~itK~f~~~-----~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~ 78 (501)
T COG3845 4 ALEMRGITKRFPGV-----VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIR 78 (501)
T ss_pred eEEEeccEEEcCCE-----EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHH
Confidence 47899999999966 778877 9999999999999999999999999999999763
Q ss_pred -eEEEEcCCCcccc---------CCCCC----C------------------CCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 -RVMIVDTSSEIGG---------NGDIP----H------------------PGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 -rV~~Vdq~~eIa~---------~~~ip----~------------------~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.|++|.|...+.. .+.-+ . +.+...+++..+|-|+|||+.|.++|+.+
T Consensus 79 ~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 2333433321110 00000 0 12233457788999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|++|||||||+-|.|..+.++ ++.|.|||++||-+.++..+||++.++..|+...
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999987765 6899999999999999999999999999999643
No 320
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.85 E-value=6.4e-21 Score=219.23 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=120.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSE 232 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~e 232 (660)
..++++|++++|+.. ..+++++ +++|++++|+||||||||||+++|+|++.++.| .++++++|...
T Consensus 450 ~~i~~~nv~~~~~~~----~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~ 525 (659)
T TIGR00954 450 NGIKFENIPLVTPNG----DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY 525 (659)
T ss_pred CeEEEEeeEEECCCC----CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC
Confidence 358999999999522 1578887 899999999999999999999999999988755 35888888753
Q ss_pred cccC--------C---------CCCC---------CCCCcc--c---------cCCCCCHHHHHHHHHHHHHccCCcEEE
Q 038101 233 IGGN--------G---------DIPH---------PGIGNA--R---------RMQVPNSEMQHKVLIEAVENHMPQVIV 275 (660)
Q Consensus 233 Ia~~--------~---------~ip~---------~~Lg~~--r---------rl~vLSgG~qqrv~IA~aL~~~P~VLI 275 (660)
+... + .... .++... + ....||+|||||++||+|++++|++||
T Consensus 526 l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 526 MTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3210 0 0000 111110 1 125799999999999999999999999
Q ss_pred EeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 276 IDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 276 LDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
+||||++||+.....+ .+.|.|+|++||+.+.. ..||+++.+..
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999997776 45699999999999986 57999998863
No 321
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=1e-20 Score=224.18 Aligned_cols=163 Identities=17% Similarity=0.288 Sum_probs=129.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|+.++|... ....+|+++ |.+|+.++|+||+||||||++..|.|++.|+.|.
T Consensus 349 g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr 426 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLR 426 (1228)
T ss_pred cceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHH
Confidence 468999999999765 134688888 9999999999999999999999999999998652
Q ss_pred -eEEEEcCCCccccC-------CCCCCC---------------------------CCCccccCCCCCHHHHHHHHHHHHH
Q 038101 223 -RVMIVDTSSEIGGN-------GDIPHP---------------------------GIGNARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~-------~~ip~~---------------------------~Lg~~rrl~vLSgG~qqrv~IA~aL 267 (660)
+|++|.|..-+... .+-|.. -+++ +.+ +||||||||++||||+
T Consensus 427 ~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~-qLSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 427 SQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGV-QLSGGQKQRIAIARAL 504 (1228)
T ss_pred hhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCC-CCChHHHHHHHHHHHH
Confidence 45666655422110 011100 1111 233 3999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCc
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGD 330 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd 330 (660)
+.+|+||+|||||++||+.+.+.+ +..|.|.|+++|.++.+.. +|.++++++|+|.+.+..+
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHH
Confidence 999999999999999999987655 4679999999999999876 9999999999998865433
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.85 E-value=1e-20 Score=202.71 Aligned_cols=165 Identities=17% Similarity=0.258 Sum_probs=131.7
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC------------------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND------------------ 219 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~------------------ 219 (660)
.++.+.++||+..|+.. -|...+++++ +..||.++|+|.+|||||-..+.|.|+++..
T Consensus 3 ~~~lL~v~nLsV~f~~~-~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 3 TMPLLSIRNLSVAFHQE-GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CCcceeeeccEEEEecC-CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 34568899999999754 2455788888 8999999999999999999999999999762
Q ss_pred ---------CCCeEEEEcCCCcccc-------------------C---------------CCCCCCCCCccccCCCCCHH
Q 038101 220 ---------YKKRVMIVDTSSEIGG-------------------N---------------GDIPHPGIGNARRMQVPNSE 256 (660)
Q Consensus 220 ---------~GkrV~~Vdq~~eIa~-------------------~---------------~~ip~~~Lg~~rrl~vLSgG 256 (660)
.|.+|+.|+|...-.- . -++|++.-.-.....+||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 1346777777543210 0 01222111112356789999
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 257 MQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 257 ~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+||||||.|++.+|++||.||||++||.....++ ++.|+.++++|||+.++..++|++++|..|+++.-
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 99999999999999999999999999999876665 57899999999999999999999999999998753
No 323
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-20 Score=209.77 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=124.8
Q ss_pred ceEEEE--eEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 038101 163 RKGAII--GLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------- 221 (660)
Q Consensus 163 ~~LeI~--~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------- 221 (660)
..++++ +|+++|.+. ..++.++ +++|+.++|+|++|||||||++.|+|+++++.|
T Consensus 317 ~~~ei~~~~l~~~y~~g----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 317 PPIEISLENLSFRYPDG----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred CCceeeecceEEecCCC----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 345555 999999764 1577887 899999999999999999999999999998744
Q ss_pred --CeEEEEcCCCccccC--------CC--------------------CCC-CCCCccccC----CCCCHHHHHHHHHHHH
Q 038101 222 --KRVMIVDTSSEIGGN--------GD--------------------IPH-PGIGNARRM----QVPNSEMQHKVLIEAV 266 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~--------~~--------------------ip~-~~Lg~~rrl----~vLSgG~qqrv~IA~a 266 (660)
+++.+|+|...+... +. ++. .++ ...+ ..+|+||+||+++|||
T Consensus 393 ~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GL--dt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 393 WRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGL--DTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcc--cchhccCCCCCCHHHHHHHHHHHH
Confidence 457888877654210 00 010 011 1122 2489999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+.++++++++||||++||++....+ ..++.|||++||....+. -+|+|++++.|++...+
T Consensus 471 ll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~-~~D~I~vld~G~l~~~g 536 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA-DADRIVVLDNGRLVEQG 536 (559)
T ss_pred hcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh-cCCEEEEecCCceeccC
Confidence 9999999999999999999997776 356799999999998765 59999999999987644
No 324
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=7.5e-21 Score=212.05 Aligned_cols=152 Identities=14% Similarity=0.226 Sum_probs=117.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+++++ +++|+.++|+||+|||||||++.|+|++.|+.|
T Consensus 319 ~~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CeEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 368999999999753 11578888 999999999999999999999999999998754
Q ss_pred CeEEEEcCCCccccC----------CCCCC---------CC-----------CCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN----------GDIPH---------PG-----------IGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~----------~~ip~---------~~-----------Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.++|++|...+... ..... .+ ++. ...-..+|||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 247777776543210 00000 01 110 01234699999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+|++||+||||++||+...+.+ ...|.|+|++||+.+... .||+++.+
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999998776 236899999999998875 69998753
No 325
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.85 E-value=1.2e-20 Score=212.50 Aligned_cols=159 Identities=17% Similarity=0.268 Sum_probs=124.0
Q ss_pred ceEEEEeEEEEECc-cccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 163 RKGAIIGLTCRVGR-AVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr-~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
..++++|++++|++ . .+++++ +++|+.++|+||+|||||||++.|+|++.+..|
T Consensus 327 ~~I~f~~vsf~y~~~~-----~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 327 GSIEFENVSFSYPGKK-----PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CeEEEEEEEEEcCCCC-----ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 34899999999984 4 789988 899999999999999999999999999999654
Q ss_pred -CeEEEEcCCCccccC-------CCCCC-------------------CCC--CccccC----CCCCHHHHHHHHHHHHHc
Q 038101 222 -KRVMIVDTSSEIGGN-------GDIPH-------------------PGI--GNARRM----QVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------~~ip~-------------------~~L--g~~rrl----~vLSgG~qqrv~IA~aL~ 268 (660)
++|++|+|...+... .+-++ ..+ |-...+ ..+|||||||++||||+.
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 346666665432110 00000 011 001122 358999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
.+|++||+||||+++|+.....+ ...|.|+|+++|..+.+.. ||++++++.|++...+
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G 545 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERG 545 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEec
Confidence 99999999999999999986654 2356799999999988776 9999999999987654
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=99.84 E-value=5.2e-21 Score=217.54 Aligned_cols=147 Identities=18% Similarity=0.206 Sum_probs=112.8
Q ss_pred eEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE----------EEcCC------
Q 038101 169 GLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM----------IVDTS------ 230 (660)
Q Consensus 169 ~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~----------~Vdq~------ 230 (660)
.++++||.. ..+|.++ +++|++++|+||||||||||||+|+|++.|+.|. |. +++..
T Consensus 78 ~~~~~yg~~----~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~-i~~~~~~~~~~~~~~G~~l~~~~ 152 (590)
T PRK13409 78 EPVHRYGVN----GFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGD-YEEEPSWDEVLKRFRGTELQNYF 152 (590)
T ss_pred CceEEecCC----ceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcc-ccCCCcHHHHHHHhCChHHHHHH
Confidence 378999863 1367776 8999999999999999999999999999998774 21 01000
Q ss_pred -------Cccc----cCCCCC-------------------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 231 -------SEIG----GNGDIP-------------------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 231 -------~eIa----~~~~ip-------------------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..++ ....+| ..++.. .+.+..||+||+||++||++++.+|+
T Consensus 153 ~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred HHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0000 000001 112321 25678899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
+|||||||++||+.++..+ ++ |.+||+++|+.+++..++|+++.+..+
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999987765 34 999999999999999999999988753
No 327
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=8.1e-21 Score=195.59 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=113.5
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-eE-EEEcCCC------ccc---c-------------
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-RV-MIVDTSS------EIG---G------------- 235 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-rV-~~Vdq~~------eIa---~------------- 235 (660)
.++.|+ |.+|++++++||||+||||+|++|.|++.|+.|+ +| |+++.++ .++ +
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 355665 8899999999999999999999999999999774 12 2222221 010 0
Q ss_pred -------CCCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--
Q 038101 236 -------NGDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-- 291 (660)
Q Consensus 236 -------~~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-- 291 (660)
.+.+|. ++++. ..++..+|-|||.|+-||++|.|+|+||+|||||-|||..++..+
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 011221 13331 246778999999999999999999999999999999999997766
Q ss_pred ------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 292 ------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 292 ------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
.+++.||+.|||+++.+..+|++++.++.|++.+
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 4679999999999999999999999999999866
No 328
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.3e-20 Score=183.98 Aligned_cols=162 Identities=23% Similarity=0.305 Sum_probs=124.7
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC---cc---
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS---EI--- 233 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~---eI--- 233 (660)
+.+++++|++.||.. .-.+++ +.+||.++|+|.+||||||||++|++-+.|+.| .|.|..... ++
T Consensus 5 PLL~V~~lsk~Yg~~-----~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~m 78 (258)
T COG4107 5 PLLSVSGLSKLYGPG-----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYTM 78 (258)
T ss_pred cceeehhhhhhhCCC-----cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhhh
Confidence 467899999999986 445555 789999999999999999999999999999876 344433211 00
Q ss_pred -------------ccC---------------CCC---------CCC--------------CCCcc---ccCCCCCHHHHH
Q 038101 234 -------------GGN---------------GDI---------PHP--------------GIGNA---RRMQVPNSEMQH 259 (660)
Q Consensus 234 -------------a~~---------------~~i---------p~~--------------~Lg~~---rrl~vLSgG~qq 259 (660)
+.. +++ .|. .|... .....+||||||
T Consensus 79 sEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQ 158 (258)
T COG4107 79 SEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQ 158 (258)
T ss_pred chHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHH
Confidence 000 000 000 11110 133568999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCc
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGD 330 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd 330 (660)
|+.||+-+...|.++++||||.|||......+ .+.|..++++|||+..+..++++.++|..|++...++.|
T Consensus 159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTD 237 (258)
T COG4107 159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTD 237 (258)
T ss_pred HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccc
Confidence 99999999999999999999999999876554 578999999999999999999999999999987765543
No 329
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.3e-21 Score=196.02 Aligned_cols=138 Identities=20% Similarity=0.257 Sum_probs=113.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------------CeEEEEcCCCccccC----CCC---
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------------KRVMIVDTSSEIGGN----GDI--- 239 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------------krV~~Vdq~~eIa~~----~~i--- 239 (660)
+....+++|.|++|||||||+|+|+|++.|+.| ++||||+|...++.. +++
T Consensus 21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG 100 (352)
T COG4148 21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYG 100 (352)
T ss_pred CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhh
Confidence 444489999999999999999999999999843 468888876654211 000
Q ss_pred -------------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCC
Q 038101 240 -------------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGI 296 (660)
Q Consensus 240 -------------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~Gv 296 (660)
.-.+|+. .|+...||||+||||+|.|||...|++|++|||.+.||..-.+++ .+..+
T Consensus 101 ~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 101 MWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 0013333 267789999999999999999999999999999999999887775 35689
Q ss_pred EEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 297 QLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 297 tVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
-|+.+||.++++..++|+++.|.+|++.+.
T Consensus 181 PIlYVSHS~~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 181 PILYVSHSLDEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred CEEEEecCHHHHHhhhheEEEecCCeEEec
Confidence 999999999999999999999999998764
No 330
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4e-20 Score=209.45 Aligned_cols=160 Identities=16% Similarity=0.252 Sum_probs=127.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||++.|... ....+|+|+ |++|+.++|+||+|+||||++..|-+++.|+.|
T Consensus 464 G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 357899999999764 234689998 999999999999999999999999999999865
Q ss_pred CeEEEEcCCCccccC-------CCCC------------------------C---CCCCccccCCCCCHHHHHHHHHHHHH
Q 038101 222 KRVMIVDTSSEIGGN-------GDIP------------------------H---PGIGNARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 krV~~Vdq~~eIa~~-------~~ip------------------------~---~~Lg~~rrl~vLSgG~qqrv~IA~aL 267 (660)
++|++|.|..-+... ++.+ + -.+|+ +=-.||||||||++|||||
T Consensus 542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGE--kG~qLSGGQKQRIAIARAL 619 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGE--KGSQLSGGQKQRIAIARAL 619 (716)
T ss_pred HHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCC--ccccccchHHHHHHHHHHH
Confidence 357777776533211 1111 0 01111 2236999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
..+|.||||||-|++||+++-..+ .-.|.|||+++|.++.+. .+|.|++++.|++.+.+
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMG 684 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeEEecc
Confidence 999999999999999999985554 235799999999999886 59999999999997754
No 331
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.83 E-value=1.7e-20 Score=210.64 Aligned_cols=159 Identities=15% Similarity=0.229 Sum_probs=128.3
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCC
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTS 230 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~ 230 (660)
.+..++++|+++.|+.. ..+++++ |..|+.++|+||||+||||||+.|+|.+.+..| .+++|++|.
T Consensus 318 g~~vl~~~~~~~~y~~~----~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~ 393 (530)
T COG0488 318 GKLVLEFENVSKGYDGG----RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH 393 (530)
T ss_pred CCeeEEEeccccccCCC----ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEeh
Confidence 45568999999999653 2677877 899999999999999999999999998877644 468999887
Q ss_pred Cc-cccC--------CCCCC------------CCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH
Q 038101 231 SE-IGGN--------GDIPH------------PGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM 286 (660)
Q Consensus 231 ~e-Ia~~--------~~ip~------------~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~ 286 (660)
.. +... ...|. +++.. .+++..||||||.|+++|+.++..|.||||||||+.||..
T Consensus 394 ~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~ 473 (530)
T COG0488 394 RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIE 473 (530)
T ss_pred hhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHH
Confidence 52 2110 00111 12211 2577899999999999999999999999999999999999
Q ss_pred HHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 287 AASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 287 a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
++..+ .+..-|||++|||..+++.+|++++.+.. .+.
T Consensus 474 s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~ 514 (530)
T COG0488 474 SLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVE 514 (530)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-cee
Confidence 98876 45677999999999999999999999987 543
No 332
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=3.2e-20 Score=207.09 Aligned_cols=138 Identities=17% Similarity=0.268 Sum_probs=107.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------e
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----------------R 223 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----------------r 223 (660)
.++++||+++|+.. ..+|+++ +++|+.++|+||+|||||||++.|+|++.|+.|. .
T Consensus 334 ~I~~~~vsf~Y~~~----~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~ 409 (529)
T TIGR02868 334 TLELRDLSFGYPGS----PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409 (529)
T ss_pred eEEEEEEEEecCCC----CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhh
Confidence 58899999999753 1589988 9999999999999999999999999999998653 5
Q ss_pred EEEEcCCCccccC--------C--CCCC---------CCCC---------ccc----cCCCCCHHHHHHHHHHHHHccCC
Q 038101 224 VMIVDTSSEIGGN--------G--DIPH---------PGIG---------NAR----RMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 224 V~~Vdq~~eIa~~--------~--~ip~---------~~Lg---------~~r----rl~vLSgG~qqrv~IA~aL~~~P 271 (660)
|+||+|...+... + .... .++. -.. +=..+|||||||++||||+..+|
T Consensus 410 i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 410 ISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred eEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 7788887644210 0 0000 0110 011 11359999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcCh
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGV 305 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~ 305 (660)
++||+||||++||+.....+ ...+.|+|++||..
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999997776 23589999999973
No 333
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=8.4e-20 Score=185.82 Aligned_cols=143 Identities=17% Similarity=0.309 Sum_probs=112.7
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc-CCC----------ccccCC---------CC
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD-TSS----------EIGGNG---------DI 239 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd-q~~----------eIa~~~---------~i 239 (660)
.+|+|+ +.+|+.++|+|+||||||||||.|+|.+.|+.|+ |.+-. -.. ++.+.. ++
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~-v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK-VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCce-EEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 577887 8999999999999999999999999999999875 21110 000 110000 00
Q ss_pred CC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCE
Q 038101 240 PH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQ 297 (660)
Q Consensus 240 p~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~Gvt 297 (660)
.. ..+|+ ..++..+|.||+.|++++.|...+|++||+||..+-.|+.-++.. .+.+.|
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~t 199 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKT 199 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCE
Confidence 00 02332 256788999999999999999999999999999999999876654 467899
Q ss_pred EEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 298 LVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 298 VI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+++.+..+||+++++..|.+...
T Consensus 200 iv~VSHd~~~I~~~Cd~~i~l~~G~i~~~ 228 (249)
T COG1134 200 IVLVSHDLGAIKQYCDRAIWLEHGQIRME 228 (249)
T ss_pred EEEEECCHHHHHHhcCeeEEEeCCEEEEc
Confidence 99999999999999999999999998764
No 334
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.7e-20 Score=205.22 Aligned_cols=158 Identities=12% Similarity=0.224 Sum_probs=122.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|... ...+|+++ +++||.++|+|++|||||||+..|+|.+.++.|.
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e 412 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHH
Confidence 57899999999876 22589988 9999999999999999999999999999888652
Q ss_pred eEEEEcCCCccccC----------CC---------CCCCCCCc---------cccC----CCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN----------GD---------IPHPGIGN---------ARRM----QVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~----------~~---------ip~~~Lg~---------~rrl----~vLSgG~qqrv~IA~aL~~~ 270 (660)
.++++.|+..+... .+ +.+.++.+ ...+ ..+|||++||++|||++.++
T Consensus 413 ~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 413 TISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred HHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 23444444332110 00 00001110 0112 35899999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
..++|+||||.|||+...+++ .-+|+|+|++||....++ .||+|+++.+|++..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkiie 552 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIE 552 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeeee
Confidence 999999999999999998776 346999999999998776 699999999999865
No 335
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=6.5e-21 Score=185.07 Aligned_cols=143 Identities=16% Similarity=0.334 Sum_probs=111.5
Q ss_pred ccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEcCCCccccC--C-
Q 038101 182 ANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------RVMIVDTSSEIGGN--G- 237 (660)
Q Consensus 182 a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------rV~~Vdq~~eIa~~--~- 237 (660)
+.+|.++ +.+|++++|+||+|||||||+|++|-+++|+.|. +|.|+-|...+.+. .
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 3677776 8999999999999999999999999999999762 12222222222111 0
Q ss_pred --CCCC------------------CCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH---
Q 038101 238 --DIPH------------------PGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--- 291 (660)
Q Consensus 238 --~ip~------------------~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--- 291 (660)
.+|. .+++. .+++..+|||++||++|+|-|...|+||+|||||++||+...+.+
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~m 175 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHH
Confidence 0121 12222 145677999999999999999999999999999999999987765
Q ss_pred -----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 292 -----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 292 -----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+++.+.++.+||+.+.+...+++++.+..|.+.
T Consensus 176 i~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 176 IHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 578899999999999988999999999888753
No 336
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=1.5e-19 Score=223.77 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=124.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|... ...+|+++ |++|+.++|+|++|||||||++.|.|++.|+.| +
T Consensus 1234 ~I~f~nVsf~Y~~~---~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1234 SIKFEDVHLRYRPG---LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred cEEEEEEEEEECCC---CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 58999999999532 12589998 999999999999999999999999999998855 3
Q ss_pred eEEEEcCCCccccC---------CCCCC--------------------CCCCcc--ccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 RVMIVDTSSEIGGN---------GDIPH--------------------PGIGNA--RRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 rV~~Vdq~~eIa~~---------~~ip~--------------------~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+|++|+|...+... ..... .++... ..=..+|+|||||++||||++++|
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 57788776543210 00000 011100 111359999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI----A--QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i----~--~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||||||+|+++|....+.+ . ..+.|+|+++|..+.+.. ||+++++..|++.+.
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY 1450 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence 99999999999999986665 2 258999999999988765 999999999998764
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=6.4e-20 Score=226.28 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=118.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|+.. ....+|+++ +++|+.++|+||||||||||+++|+|++.|+.|.
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr 459 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWR 459 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHH
Confidence 58899999999742 112588888 9999999999999999999999999999988652
Q ss_pred -eEEEEcCCCcccc--------CCCCC-----------------------------------------------------
Q 038101 223 -RVMIVDTSSEIGG--------NGDIP----------------------------------------------------- 240 (660)
Q Consensus 223 -rV~~Vdq~~eIa~--------~~~ip----------------------------------------------------- 240 (660)
.|++|.|...+.. .+...
T Consensus 460 ~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 539 (1466)
T PTZ00265 460 SKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK 539 (1466)
T ss_pred HhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence 2444444432210 00000
Q ss_pred ---C------------CCCCc-------------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-
Q 038101 241 ---H------------PGIGN-------------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI- 291 (660)
Q Consensus 241 ---~------------~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i- 291 (660)
. .++.. ..+...||+|||||++||||++++|+||||||||++||+.....+
T Consensus 540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~ 619 (1466)
T PTZ00265 540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ 619 (1466)
T ss_pred ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence 0 00000 022356999999999999999999999999999999999987765
Q ss_pred ------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 292 ------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 292 ------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
.+ .|.|+|++||+.+.+ ..||+++.+..|+
T Consensus 620 ~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 620 KTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 22 589999999999987 5799999999874
No 338
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.81 E-value=3.5e-20 Score=219.34 Aligned_cols=161 Identities=17% Similarity=0.271 Sum_probs=130.0
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..+.+.+|++.|++... +++++ |++||+++++|+|||||||++++|.|..+++.|.
T Consensus 563 ~~~~~~~L~k~y~~~~~----Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~ 638 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG----AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 (885)
T ss_pred ceEEEcceeeeecchhh----hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence 45678999999998721 78777 9999999999999999999999999999998663
Q ss_pred --eEEEEcCCCcc-------------ccCCCCCCC-------------CCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 223 --RVMIVDTSSEI-------------GGNGDIPHP-------------GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 223 --rV~~Vdq~~eI-------------a~~~~ip~~-------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
.+||++|.+-+ +...+++.. ++.. .+++..+|+|+|+|+++|.|++.+|+
T Consensus 639 ~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~ 718 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS 718 (885)
T ss_pred hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC
Confidence 24444444321 111233321 2221 24678899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+++||||++|+||.+++.+ ++.|..+|.|||.+++++.+|+|+..|..|+++.++
T Consensus 719 vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 719 VILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 9999999999999999887 345669999999999999999999999999998865
No 339
>PLN03130 ABC transporter C family member; Provisional
Probab=99.81 E-value=4.4e-19 Score=220.64 Aligned_cols=161 Identities=12% Similarity=0.154 Sum_probs=125.9
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||+++|... ...+|+++ |++|+.++|+|++|||||||++.|.|++.++.|
T Consensus 1236 g~I~f~nVsf~Y~~~---~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR 1312 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPE---LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312 (1622)
T ss_pred CcEEEEEEEEEeCCC---CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHH
Confidence 358999999999642 12589988 999999999999999999999999999998754
Q ss_pred CeEEEEcCCCccccC--------C-CCCC--------------------CCCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 KRVMIVDTSSEIGGN--------G-DIPH--------------------PGIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~-~ip~--------------------~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+++++|+|...+... + .... .++... ..-..+|+|||||++||||++.+
T Consensus 1313 ~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1313 KVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred hccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 357788877543210 0 0000 011100 11236999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI----A--QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i----~--~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+||||||+|+++|......+ . -.|+|+|+++|..+.+.. ||+|+++.+|++.+.+
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFD 1454 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeC
Confidence 999999999999999986665 2 258999999999998764 9999999999987643
No 340
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=3.5e-19 Score=179.50 Aligned_cols=77 Identities=10% Similarity=0.123 Sum_probs=67.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+....+|+|||||++||++++.+| ++||+|||+++||+..+..+ ++.|.|+|++||+.+++. +||+++.+
T Consensus 133 ~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l 211 (226)
T cd03270 133 RSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDI 211 (226)
T ss_pred CccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEe
Confidence 466789999999999999999998 59999999999999987765 457999999999999875 89999999
Q ss_pred ------EcCeEEE
Q 038101 319 ------LIGGVQN 325 (660)
Q Consensus 319 ------~~G~I~~ 325 (660)
..|+|.+
T Consensus 212 ~~~~~~~~G~iv~ 224 (226)
T cd03270 212 GPGAGVHGGEIVA 224 (226)
T ss_pred CCCccccCCEEEe
Confidence 7777654
No 341
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.81 E-value=2.8e-19 Score=191.87 Aligned_cols=174 Identities=15% Similarity=0.269 Sum_probs=128.9
Q ss_pred eEEEEeEEEEECcc---cccc---ccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------
Q 038101 164 KGAIIGLTCRVGRA---VSGS---ANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~---v~G~---a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------ 222 (660)
.++.++++..|.-. +... ..+++++ +.+|+.++|+|.+|||||||-++|.+++.+. |.
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 57889999888432 1111 2345565 8899999999999999999999999999876 31
Q ss_pred ---------eEEEEcCCC--ccc---------cCCC-CCC------------------CCCCc---cccCCCCCHHHHHH
Q 038101 223 ---------RVMIVDTSS--EIG---------GNGD-IPH------------------PGIGN---ARRMQVPNSEMQHK 260 (660)
Q Consensus 223 ---------rV~~Vdq~~--eIa---------~~~~-ip~------------------~~Lg~---~rrl~vLSgG~qqr 260 (660)
++-+|+|.. .+. +.+. +.. .+++. .|....+||||+||
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQR 434 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQR 434 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhH
Confidence 122222221 110 0000 001 13332 36778999999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchh
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEE 332 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~ 332 (660)
++||||++.+|++|++||||++||...+.++ .+.|.+.++++||+..+..+|+++++|.+|+|+.-
T Consensus 435 IAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~------ 508 (534)
T COG4172 435 IAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ------ 508 (534)
T ss_pred HHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee------
Confidence 9999999999999999999999999876664 46899999999999999999999999999999763
Q ss_pred hhcccchHHHHhhcCC
Q 038101 333 AHRRGVQKTVLERKGP 348 (660)
Q Consensus 333 a~~~Gt~~~Iler~~~ 348 (660)
|..++|++.+..
T Consensus 509 ----G~~~~if~~P~~ 520 (534)
T COG4172 509 ----GPTEAVFANPQH 520 (534)
T ss_pred ----CCHHHHhcCCCc
Confidence 345666665533
No 342
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.81 E-value=4.4e-19 Score=218.88 Aligned_cols=158 Identities=14% Similarity=0.178 Sum_probs=120.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc----------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN---------------------- 218 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p---------------------- 218 (660)
.++++||+++|... ....+|+++ +++|+.++|+||+|||||||++.|.|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred eEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 58999999999632 012589988 999999999999999999999999999987
Q ss_pred --------------------------------CCC------------------CeEEEEcCCCccccC-------CCCCC
Q 038101 219 --------------------------------DYK------------------KRVMIVDTSSEIGGN-------GDIPH 241 (660)
Q Consensus 219 --------------------------------~~G------------------krV~~Vdq~~eIa~~-------~~ip~ 241 (660)
+.| +.|+||+|...+... .+-+.
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~ 1322 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED 1322 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC
Confidence 223 246777776543210 00010
Q ss_pred C-----------------------CCCcc--ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----H
Q 038101 242 P-----------------------GIGNA--RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----A 292 (660)
Q Consensus 242 ~-----------------------~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~ 292 (660)
. ++... .+=..||||||||++||||++.+|+||||||||++||....+.+ .
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~ 1402 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 0 11100 12235999999999999999999999999999999999986665 1
Q ss_pred ----hcCCEEEEEEcChhHHHHhcCcEEEEEc----CeEE
Q 038101 293 ----QRGIQLVATAHGVTIENLIMNPSLEMLI----GGVQ 324 (660)
Q Consensus 293 ----~~GvtVI~TtH~~~l~~~i~dril~l~~----G~I~ 324 (660)
..|.|+|+++|..+.+. .||+++++.+ |++.
T Consensus 1403 ~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1403 DIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEE
Confidence 25899999999998875 5999999998 8753
No 343
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.80 E-value=2.8e-19 Score=204.22 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=112.5
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC---CC---------------CeEEEEcCCCccccC-----
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND---YK---------------KRVMIVDTSSEIGGN----- 236 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~---~G---------------krV~~Vdq~~eIa~~----- 236 (660)
.+|+++ +++|+.++|+|||||||||||++|+|...++ .| +.++|++|...+...
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e 118 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE 118 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence 577777 8999999999999999999999999988763 22 235777765432110
Q ss_pred -------CCCCC-----------------CCCCc--cccC------CCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 237 -------GDIPH-----------------PGIGN--ARRM------QVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 237 -------~~ip~-----------------~~Lg~--~rrl------~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
...+. .++.. ...+ ..+|+|||||+.||++++.+|+||++|||++|||
T Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD 198 (617)
T TIGR00955 119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198 (617)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchh
Confidence 01111 12222 1223 3599999999999999999999999999999999
Q ss_pred HHHHHHH-------HhcCCEEEEEEcChh-HHHHhcCcEEEEEcCeEEEEe
Q 038101 285 AMAASTI-------AQRGIQLVATAHGVT-IENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 285 ~~a~~~i-------~~~GvtVI~TtH~~~-l~~~i~dril~l~~G~I~~V~ 327 (660)
+.++..+ ++.|.|+|+++|+.+ .+..++|+++.+.+|++.+.+
T Consensus 199 ~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G 249 (617)
T TIGR00955 199 SFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249 (617)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEEC
Confidence 9997775 456999999999985 567789999999999987654
No 344
>PTZ00243 ABC transporter; Provisional
Probab=99.80 E-value=6.8e-19 Score=218.48 Aligned_cols=161 Identities=12% Similarity=0.170 Sum_probs=125.5
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||+++|... ...+|+++ |++|+.++|+|++|||||||++.|.|++.++.|
T Consensus 1307 G~I~f~nVsf~Y~~~---~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG---LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred CeEEEEEEEEEeCCC---CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 458999999999653 12589998 999999999999999999999999999998754
Q ss_pred CeEEEEcCCCccccC---------CCCCC---------CCCCc---------cccC----CCCCHHHHHHHHHHHHHccC
Q 038101 222 KRVMIVDTSSEIGGN---------GDIPH---------PGIGN---------ARRM----QVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---------~~ip~---------~~Lg~---------~rrl----~vLSgG~qqrv~IA~aL~~~ 270 (660)
+.|++|+|...+... ..... .++.+ ...+ ..||+|||||++||||++++
T Consensus 1384 ~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred hcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 357888877544210 00000 01110 0112 35999999999999999996
Q ss_pred -CcEEEEeCCCCCccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 -PQVIVIDEIGTKLEAMAASTI----A--QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 -P~VLILDEPgsgLD~~a~~~i----~--~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+||||||||+++|....+.+ . -.+.|+|+++|..+.+. .||+|++|.+|++.+.+
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE~G 1526 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAEMG 1526 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEEC
Confidence 899999999999999986665 2 25899999999998775 59999999999987643
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=4.5e-19 Score=219.85 Aligned_cols=160 Identities=14% Similarity=0.198 Sum_probs=126.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGG 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~ 235 (660)
.++++|++++|+.. ...+|+++ +++|+.++|+|||||||||||++|+|++.+..|. +|+|++|...+..
T Consensus 636 ~i~~~~~~~~~~~~---~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~ 712 (1522)
T TIGR00957 636 SITVHNATFTWARD---LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQN 712 (1522)
T ss_pred cEEEEEeEEEcCCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccC
Confidence 58899999999742 11578887 8999999999999999999999999999988663 5789988754321
Q ss_pred C--------C-CCC------------------CCCCCc----cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 236 N--------G-DIP------------------HPGIGN----ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 236 ~--------~-~ip------------------~~~Lg~----~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
. + .+. ...-+. ..+...||||||||++||||++.+|+++|+|||+++||
T Consensus 713 ~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 713 DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 0 0 000 000010 12345799999999999999999999999999999999
Q ss_pred HHHHHHHH---------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 285 AMAASTIA---------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 285 ~~a~~~i~---------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+...+.+. .+|.|+|++||+...+.. ||+++.+.+|++...+
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMG 843 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeC
Confidence 99877651 247899999999998865 9999999999987644
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.80 E-value=3.7e-19 Score=218.92 Aligned_cols=163 Identities=18% Similarity=0.170 Sum_probs=122.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc---cCCC--------------Ce
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA---NDYK--------------KR 223 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~---p~~G--------------kr 223 (660)
.++++||++.|+.. .+...+|+++ +++|++++|+|||||||||||++|+|.+. ++.| +.
T Consensus 759 ~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred eEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 36899999999521 1123688988 99999999999999999999999999986 3322 24
Q ss_pred EEEEcCCCccccC-------------C---CCC-------------CCCCCc--cccCC----CCCHHHHHHHHHHHHHc
Q 038101 224 VMIVDTSSEIGGN-------------G---DIP-------------HPGIGN--ARRMQ----VPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 224 V~~Vdq~~eIa~~-------------~---~ip-------------~~~Lg~--~rrl~----vLSgG~qqrv~IA~aL~ 268 (660)
++|+.|...+... . .++ ..++.. .+.+. .+|+|||||+.||++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 6777775421100 0 000 012221 12333 69999999999999999
Q ss_pred cCCc-EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHH-HHhcCcEEEEEcC-eEEEEe
Q 038101 269 HMPQ-VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIE-NLIMNPSLEMLIG-GVQNVT 327 (660)
Q Consensus 269 ~~P~-VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~-~~i~dril~l~~G-~I~~V~ 327 (660)
.+|+ ||+|||||++||..++..+ ++.|.|||+++|+.+.. ...+|+++.+..| ++.+.+
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEEC
Confidence 9997 9999999999999987765 46799999999999863 4579999999987 776643
No 347
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=7.4e-19 Score=217.96 Aligned_cols=161 Identities=11% Similarity=0.151 Sum_probs=125.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|... ...+|+++ |++|+.++|+|++|||||||++.|.|++.++.|
T Consensus 1283 g~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CcEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 358999999999643 12589988 999999999999999999999999999998754
Q ss_pred CeEEEEcCCCccccC---------CCCCC--------------------CCCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 KRVMIVDTSSEIGGN---------GDIPH--------------------PGIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---------~~ip~--------------------~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+++++|+|...+... +.... .++... ..-..+|+|||||++||||++.+
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 357788877543210 00000 011110 11135899999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI----A--QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i----~--~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+||||||||+++|......+ . -.+.|+|+++|..+.+. .+|++++|.+|++.+.+
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlVld~G~IvE~G 1501 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIVLDKGEVAEFG 1501 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEEC
Confidence 999999999999999986555 2 25899999999998876 49999999999987643
No 348
>PLN03232 ABC transporter C family member; Provisional
Probab=99.79 E-value=7.4e-19 Score=217.67 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=125.4
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCCccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------KRVMIVDTSSEIG 234 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------krV~~Vdq~~eIa 234 (660)
.++++|++++|+.. ....+|+++ +++|+.++|+||+|||||||++.|.|.+.+..| ..|+|++|...+.
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccc
Confidence 58899999999742 012578888 999999999999999999999999999998765 3689998876442
Q ss_pred cC--------C----------------------CCCCC---CCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 235 GN--------G----------------------DIPHP---GIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 235 ~~--------~----------------------~ip~~---~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
.. + .+|+- .+|+ +=..||||||||++||||+..+|+++|||||++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe--~G~~LSGGQkQRIaLARAly~~~~IlLLDEptS 769 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGE--RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLS 769 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecC--CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10 0 01100 1111 123599999999999999999999999999999
Q ss_pred CccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 282 KLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 282 gLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||+...+.+ ...|.|+|++||..+... .+|.++.+.+|++...+
T Consensus 770 aLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 770 ALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEG 821 (1495)
T ss_pred ccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEEec
Confidence 9999876654 125799999999998764 69999999999987654
No 349
>cd02645 R3H_AAA R3H domain of a group of proteins with unknown function, who also contain a AAA-ATPase (AAA) domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to be binding ssDNA or ssRNA in a sequence-specific manner.
Probab=99.79 E-value=1.3e-19 Score=148.57 Aligned_cols=60 Identities=68% Similarity=1.064 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCCceeecCCCChhHHHHHHHHHHHcCcceeeccCCCCceEEEcC
Q 038101 554 DALEEARVAIEQVVIPKGESVELLPRPSYILSIQIDLIRKYQLHYQRVGKEPDARLRILP 613 (660)
Q Consensus 554 ~al~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 613 (660)
+|||||+.||+||+.++|+||+|.|+++++|++||+++++|+|.|+|+|+||+|||+|+|
T Consensus 1 ~al~ea~~aa~~V~~~~~~~veL~Pm~~~eRri~H~~v~~~~l~s~S~G~ep~RrvvI~p 60 (60)
T cd02645 1 DALEEARLAIEQVVIPKGEPVELLPRSAYIRRLQHDLVERYQLRSESFGSEPNRRLRILP 60 (60)
T ss_pred CHHHHHHHHHHHHHhcCCceEEcCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcEEEEeC
Confidence 599999999999999988999999999999999999999999999999999999999998
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.1e-19 Score=180.15 Aligned_cols=156 Identities=21% Similarity=0.308 Sum_probs=122.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI------ 233 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eI------ 233 (660)
..+++.|||.+||.. .+|+++ +..|+.-+||||||+||||+|-.|+|...|+.|+ |.| +...++
T Consensus 4 ~iL~~~~vsVsF~GF-----~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~-v~f-~g~~dl~~~~e~ 76 (249)
T COG4674 4 IILYLDGVSVSFGGF-----KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE-VLF-DGDTDLTKLPEH 76 (249)
T ss_pred ceEEEeceEEEEcce-----eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcce-EEE-cCchhhccCCHH
Confidence 457899999999998 899988 8999999999999999999999999999998774 433 332211
Q ss_pred --c--cCC---CCCC-------------------------------------------CCCCcc--ccCCCCCHHHHHHH
Q 038101 234 --G--GNG---DIPH-------------------------------------------PGIGNA--RRMQVPNSEMQHKV 261 (660)
Q Consensus 234 --a--~~~---~ip~-------------------------------------------~~Lg~~--rrl~vLSgG~qqrv 261 (660)
+ +.+ ..|. .+++.. +....||-||||++
T Consensus 77 ~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwL 156 (249)
T COG4674 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWL 156 (249)
T ss_pred HHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhh
Confidence 1 000 0110 022221 22356899999999
Q ss_pred HHHHHHccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 262 LIEAVENHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
-|.+.++.+|++|++|||.+|+........ ...+.+|+++-||+.++..+++++-+++.|.+-+
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLA 226 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceee
Confidence 999999999999999999999876654432 3567899999999999999999999999998754
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=1.3e-18 Score=214.34 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=122.1
Q ss_pred eEEEEeEEEEECccc--------cccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCC---------
Q 038101 164 KGAIIGLTCRVGRAV--------SGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN--DYK--------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v--------~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--~~G--------- 221 (660)
.+..+||++.+.... .+...+|+++ +++|++++|+|||||||||||++|+|...+ ..|
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 467899998884221 1223588888 999999999999999999999999998753 112
Q ss_pred ------CeEEEEcCCCcccc------------CCCCCC-----------------CCCCcc--ccC-----CCCCHHHHH
Q 038101 222 ------KRVMIVDTSSEIGG------------NGDIPH-----------------PGIGNA--RRM-----QVPNSEMQH 259 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~------------~~~ip~-----------------~~Lg~~--rrl-----~vLSgG~qq 259 (660)
+.++|+.|...+.. ....+. .++... +.+ ..+|+||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 23677777542210 000110 122211 222 469999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhH-HHHhcCcEEEEEc-CeEEEEe
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTI-ENLIMNPSLEMLI-GGVQNVT 327 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l-~~~i~dril~l~~-G~I~~V~ 327 (660)
|+.||++++.+|++|++||||+|||+.++..+ ++.|.|||+++|+.+. +..++|+++.+.. |++.+.+
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 99999999999999999999999999987765 4679999999999984 5678999999986 7776543
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=1.3e-18 Score=216.54 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=125.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-C-----CeEEEEcCCCccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY-K-----KRVMIVDTSSEIG 234 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~-G-----krV~~Vdq~~eIa 234 (660)
.++++|++++|+.. ....+|+++ +++|+.++|+||+|||||||++.|.|.+.+.. | .+|+|++|...+.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccC
Confidence 58899999999742 012578888 89999999999999999999999999999887 4 4689999876442
Q ss_pred cC--------C----------------------CCCC---CCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 235 GN--------G----------------------DIPH---PGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 235 ~~--------~----------------------~ip~---~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
.. + .+|+ ..+|+ +=..||||||||++||||+..+|+++|||||++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe--~G~~LSGGQKQRIaLARAly~~~~IlLLDEptS 769 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGE--RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccC--CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 10 0 0111 01111 223599999999999999999999999999999
Q ss_pred CccHHHHHHH-----H--hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 282 KLEAMAASTI-----A--QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 282 gLD~~a~~~i-----~--~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||+...+.+ . ..|.|+|++||...... .+|+++.+.+|++...+
T Consensus 770 ALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 770 ALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEG 821 (1622)
T ss_pred ccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeC
Confidence 9999876554 1 25899999999998765 59999999999987654
No 353
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=8.4e-19 Score=175.94 Aligned_cols=165 Identities=18% Similarity=0.272 Sum_probs=127.0
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-----------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS----------- 230 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~----------- 230 (660)
+.+.|+++-|.+...-...+|.++ |.+|+++.|+|.||+|||||++.|+|-+.++.|+ | ++++.
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~-I-~Idg~dVtk~~~~~RA 79 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQ-I-LIDGVDVTKKSVAKRA 79 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCce-E-EECceecccCCHHHHh
Confidence 356777787766544445678877 8999999999999999999999999999999875 2 23221
Q ss_pred ---------CccccCC------------------CCCC----------------CCCC--c--cccCCCCCHHHHHHHHH
Q 038101 231 ---------SEIGGNG------------------DIPH----------------PGIG--N--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 231 ---------~eIa~~~------------------~ip~----------------~~Lg--~--~rrl~vLSgG~qqrv~I 263 (660)
...+-+. ++.. .+++ . ..+++-+||||||-+.+
T Consensus 80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 1111000 0000 0111 1 13567899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCch
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDE 331 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~ 331 (660)
..|-.+.|+||+|||-|++|||.....+ .+.+.|.+++||.+..+-.+.+|.++++.|+|..-..+++
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~ 235 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccccc
Confidence 9999999999999999999999986654 5778999999999999999999999999999876555554
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.79 E-value=4.9e-19 Score=194.13 Aligned_cols=157 Identities=20% Similarity=0.321 Sum_probs=123.5
Q ss_pred eEEEEeEEEEECcccccc-ccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGS-ANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY------------------K 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~-a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~------------------G 221 (660)
.+.++++++-= +|. ..+++++ +..|+.++||||+|||||||.|.|.|...|.. |
T Consensus 334 ~L~Ve~l~~~P----Pg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 334 ALSVERLTAAP----PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred eeeEeeeeecC----CCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 36788888732 222 3578887 89999999999999999999999999999873 5
Q ss_pred CeEEEEcCCCcccc---------CC-C---------------------CCC---CCCCccccCCCCCHHHHHHHHHHHHH
Q 038101 222 KRVMIVDTSSEIGG---------NG-D---------------------IPH---PGIGNARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 krV~~Vdq~~eIa~---------~~-~---------------------ip~---~~Lg~~rrl~vLSgG~qqrv~IA~aL 267 (660)
+.|||.+|.-|+.. ++ + +|+ ..+|+ .=..||+|||||+++|||+
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~--~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE--GGATLSGGQRQRIALARAL 487 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCC--CCCCCCchHHHHHHHHHHH
Confidence 78999998876531 11 0 010 01111 1135899999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAAST-------IAQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~-------i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
..+|.+++||||-++||...-.. ++++|.++|++||-.+... .+|+++++.+|++...+
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG 553 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAFG 553 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhcC
Confidence 99999999999999999986443 3789999999999998765 69999999999987654
No 355
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=2.3e-18 Score=204.34 Aligned_cols=161 Identities=17% Similarity=0.295 Sum_probs=126.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|... ....+++++ ++.|+.++|+||+||||||++-+|-|.+.|+.| +
T Consensus 987 ~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR--PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred EEEEeeeEeeCCCC--CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 58999999999754 234688988 999999999999999999999999999998865 2
Q ss_pred eEEEEcCCCccccC--------C--CCCCC--------------------CCCcc--ccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------G--DIPHP--------------------GIGNA--RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~--~ip~~--------------------~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+++.|.|...+... | .+++. |.+-. .+=.+||||||||++||||++.+
T Consensus 1065 ~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred hcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 45666665433210 1 11110 11100 13357999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+||||||-|++||.++-+.+ +..|.|.|+++|.++.+. .||.|.++.+|++++-+
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEEEecc
Confidence 999999999999999986554 457999999999999875 69999999999997643
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.78 E-value=2.9e-18 Score=212.28 Aligned_cols=158 Identities=18% Similarity=0.245 Sum_probs=123.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|... ...+|+++ |++|+.++|+|++|||||||+++|.|++. ..| +
T Consensus 1217 ~I~f~nVs~~Y~~~---~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEA---GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred eEEEEEEEEEeCCC---CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 58999999999742 12689988 99999999999999999999999999986 333 3
Q ss_pred eEEEEcCCCccccC---------CCCCC---------CCCCc---------cccC----CCCCHHHHHHHHHHHHHccCC
Q 038101 223 RVMIVDTSSEIGGN---------GDIPH---------PGIGN---------ARRM----QVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 rV~~Vdq~~eIa~~---------~~ip~---------~~Lg~---------~rrl----~vLSgG~qqrv~IA~aL~~~P 271 (660)
++++|+|...+... ..... .++.. ...+ ..+|+|||||++||||++.+|
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 57788877654211 00000 01100 0111 258999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||||||||+++|......+ ...++|||+++|..+.+. .+|++++|..|++...
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL-ECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEe
Confidence 99999999999999986665 235899999999998776 4999999999998764
No 357
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.77 E-value=2.3e-18 Score=171.62 Aligned_cols=154 Identities=15% Similarity=0.141 Sum_probs=105.1
Q ss_pred eEEEEeEEEEECccccccccccc-ccccCCcEEEEEcCCCCcHHHHHHHHHhccc-cCCC-----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQ-DLVQDGASLLFIGPPGVGKTTIIREIARVLA-NDYK-----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~-dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~-p~~G-----------------krV 224 (660)
.++++|+. .|.+. ..+. ....+|++++|+|||||||||||++|++.+. ...+ ..|
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEE
Confidence 35677777 44332 2222 1134588999999999999999999996542 1111 123
Q ss_pred EEEcCCCccc----cCCCC-----------CCCCCCc--cccCCCCCHHHHHHHHHHHHHcc----------CCcEEEEe
Q 038101 225 MIVDTSSEIG----GNGDI-----------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENH----------MPQVIVID 277 (660)
Q Consensus 225 ~~Vdq~~eIa----~~~~i-----------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~----------~P~VLILD 277 (660)
.++.+..... ...++ ++..+.. .+....+|+||+||+++++++++ +|++||+|
T Consensus 79 ~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 79 SFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred EEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 3333221100 00001 1111111 23556799999999999999975 57899999
Q ss_pred CCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 278 EIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
||+++||+.....+ ++.|.|||++||+.+++..+|++++++.+|+.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 99999999987765 34589999999999999999999999998863
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.77 E-value=6.6e-18 Score=209.23 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=114.1
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCccccC-------CCCCC------
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGGN-------GDIPH------ 241 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~~-------~~ip~------ 241 (660)
.+|+++ +++|+.++|+|||||||||||++|+|++.+..|. +|+|+.|...+... .+.+.
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 519 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT 519 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence 467877 8999999999999999999999999999988663 57888887543210 00000
Q ss_pred --------------CCCCcc----ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHH-------hcCC
Q 038101 242 --------------PGIGNA----RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIA-------QRGI 296 (660)
Q Consensus 242 --------------~~Lg~~----rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~-------~~Gv 296 (660)
...+.. .+...||||||||++||||++.+|+++|||||+++||+.....+. ..|.
T Consensus 520 ~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~ 599 (1490)
T TIGR01271 520 SVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNK 599 (1490)
T ss_pred HHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCC
Confidence 000110 134579999999999999999999999999999999999977662 2489
Q ss_pred EEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 297 QLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 297 tVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|+|++||+...+.. ||+++.+.+|++...+
T Consensus 600 tvilvtH~~~~~~~-ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 600 TRILVTSKLEHLKK-ADKILLLHEGVCYFYG 629 (1490)
T ss_pred eEEEEeCChHHHHh-CCEEEEEECCEEEEEc
Confidence 99999999998864 9999999999986543
No 359
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=165.59 Aligned_cols=136 Identities=18% Similarity=0.343 Sum_probs=108.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC-------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY-------------------K 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~-------------------G 221 (660)
.+.++|++.+.+.. ..|.++ |.+||++-|+||+|||||||+.-++|.+.+.. .
T Consensus 2 ~l~l~nvsl~l~g~-----cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS-----CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecCCCc-----eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 35688999888766 667666 99999999999999999999999999998762 2
Q ss_pred CeEEEEcCCCccccCCCCCCCCCCc--------------------------------cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGNGDIPHPGIGN--------------------------------ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~~~ip~~~Lg~--------------------------------~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.+++..|...+ +||..++. .+....+|||||.|+++.|++..
T Consensus 77 Rq~GiLFQD~lL-----FphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla 151 (213)
T COG4136 77 RQIGILFQDALL-----FPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151 (213)
T ss_pred hheeeeeccccc-----ccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHh
Confidence 345555554433 33332221 13456799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHH
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~ 309 (660)
.|+.+++|||++.||..-+..+ ...|.-.|.+|||...+.
T Consensus 152 ~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred CcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 9999999999999999887665 567999999999987665
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.3e-18 Score=171.47 Aligned_cols=137 Identities=26% Similarity=0.342 Sum_probs=103.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC----c-c---
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS----E-I--- 233 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~----e-I--- 233 (660)
++.++|++.-+.. .++.++ +..|+.+.|.||||||||||||+|+|++.|+.|. |.+-+... + .
T Consensus 3 L~a~~L~~~R~e~-----~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~-v~~~~~~i~~~~~~~~~~ 76 (209)
T COG4133 3 LEAENLSCERGER-----TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGE-VYWQGEPIQNVRESYHQA 76 (209)
T ss_pred chhhhhhhccCcc-----eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCe-EEecCCCCccchhhHHHH
Confidence 4567788877665 677776 8999999999999999999999999999999873 54432211 0 0
Q ss_pred ----c---cC-----------------CCCC---------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeC
Q 038101 234 ----G---GN-----------------GDIP---------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDE 278 (660)
Q Consensus 234 ----a---~~-----------------~~ip---------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDE 278 (660)
+ ++ +..+ ..++.. ...+..||.|||+|++||+..+..+++-|+||
T Consensus 77 l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE 156 (209)
T COG4133 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE 156 (209)
T ss_pred HHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecC
Confidence 0 00 0000 012221 13567899999999999999999999999999
Q ss_pred CCCCccHHHHHHH-------HhcCCEEEEEEcChhH
Q 038101 279 IGTKLEAMAASTI-------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 279 PgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l 307 (660)
|+++||..+...+ ..+|-.||+|||..--
T Consensus 157 P~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 157 PFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred cccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999998776 4678999999998643
No 361
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.76 E-value=5.1e-18 Score=168.14 Aligned_cols=129 Identities=20% Similarity=0.284 Sum_probs=95.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC------------------------CCeEEEEcCCCcccc-C---CC--
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDY------------------------KKRVMIVDTSSEIGG-N---GD-- 238 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~------------------------GkrV~~Vdq~~eIa~-~---~~-- 238 (660)
+.+| +++|+||||||||||+++|++++.+.. ..+|+++.|...... . ..
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~~~~~~~ 98 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVS 98 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEEehhhHH
Confidence 6678 999999999999999999999874321 135667766443210 0 00
Q ss_pred --CCCCCCCccccCCCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChh
Q 038101 239 --IPHPGIGNARRMQVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVT 306 (660)
Q Consensus 239 --ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~ 306 (660)
+...+. ..+.+..+|+|||||++|+++++ ..|+++++|||+++||+.....+. ..+.+||++||+.+
T Consensus 99 ~~l~~~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 99 EIIEAPGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred HHHhCCCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 000111 12456789999999999999986 466999999999999999877761 24799999999999
Q ss_pred HHHHhcCcEEEEEc
Q 038101 307 IENLIMNPSLEMLI 320 (660)
Q Consensus 307 l~~~i~dril~l~~ 320 (660)
++. +||+++.+..
T Consensus 178 ~~~-~~d~v~~~~~ 190 (197)
T cd03278 178 TME-AADRLYGVTM 190 (197)
T ss_pred HHh-hcceEEEEEe
Confidence 874 7999887653
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.75 E-value=5.1e-18 Score=210.79 Aligned_cols=143 Identities=18% Similarity=0.210 Sum_probs=113.9
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCccccC--------CC-CC-----
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----KRVMIVDTSSEIGGN--------GD-IP----- 240 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----krV~~Vdq~~eIa~~--------~~-ip----- 240 (660)
.+|+++ +.+|+.++|+|||||||||||++|+|++.++.| .+|+|++|...+... +. ..
T Consensus 674 ~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~ 753 (1560)
T PTZ00243 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLA 753 (1560)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHH
Confidence 577776 899999999999999999999999999998866 368999887543210 00 00
Q ss_pred -------------CC--CCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCC
Q 038101 241 -------------HP--GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGI 296 (660)
Q Consensus 241 -------------~~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~Gv 296 (660)
.. ++.. ..+...||||||||++||||++.+|+++|||||+++||+.....+ ...|.
T Consensus 754 ~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~ 833 (1560)
T PTZ00243 754 DAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833 (1560)
T ss_pred HHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCC
Confidence 00 1110 134567999999999999999999999999999999999875554 22589
Q ss_pred EEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 297 QLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 297 tVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|++||+.+.+. .||+++.+.+|++...
T Consensus 834 TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 834 TRVLATHQVHVVP-RADYVVALGDGRVEFS 862 (1560)
T ss_pred EEEEEeCCHHHHH-hCCEEEEEECCEEEEe
Confidence 9999999999885 6999999999998654
No 363
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=8.1e-18 Score=165.56 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=116.7
Q ss_pred EEEEeEEEEECcc--ccc--cccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc---
Q 038101 165 GAIIGLTCRVGRA--VSG--SANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIG--- 234 (660)
Q Consensus 165 LeI~~Lt~rygr~--v~G--~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa--- 234 (660)
+++.||+|.|-.. .++ ...+++.+ ++.|+-++|||.||||||||.|+|+|+++|+.|+ +.+-+..-.++
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~-il~n~~~L~~~Dy~ 83 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGE-ILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCce-EEECCccccccchH
Confidence 4566666655211 001 12344444 8899999999999999999999999999999763 32222211110
Q ss_pred ------------------------cCCCCCC---------------------CCCCc---cccCCCCCHHHHHHHHHHHH
Q 038101 235 ------------------------GNGDIPH---------------------PGIGN---ARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 235 ------------------------~~~~ip~---------------------~~Lg~---~rrl~vLSgG~qqrv~IA~a 266 (660)
-.-+.|- .|+.. +-.++.++.||||||++|||
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARA 163 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARA 163 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHH
Confidence 0000000 01111 12356689999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+..+|++||.||...+||...+.++ .+.|++.|.++.+..++..++|.+++|+.|++...
T Consensus 164 LIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 164 LILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred HhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 9999999999999999999987775 36799999999999999999999999999998653
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.2e-17 Score=167.05 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=118.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCCCeEEEE-----------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN--DYKKRVMIV----------- 227 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--~~GkrV~~V----------- 227 (660)
.++|+||+..++.. .++|+++ |+.|++.+|+||||||||||.+.|+|.-.. +.| .|.|-
T Consensus 3 ~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G-~I~~~GedI~~l~~~E 77 (251)
T COG0396 3 MLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG-EILFDGEDILELSPDE 77 (251)
T ss_pred eeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc-eEEECCcccccCCHhH
Confidence 57899999999862 2799988 999999999999999999999999998533 233 22221
Q ss_pred ---------cC-CCccccC----------------CC-CCC-----------CCCCc---cccCC-CCCHHHHHHHHHHH
Q 038101 228 ---------DT-SSEIGGN----------------GD-IPH-----------PGIGN---ARRMQ-VPNSEMQHKVLIEA 265 (660)
Q Consensus 228 ---------dq-~~eIa~~----------------~~-ip~-----------~~Lg~---~rrl~-vLSgG~qqrv~IA~ 265 (660)
.| ..+|.+. .. ++. .++.. .|.+. .+|||+|+|.-|.+
T Consensus 78 RAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ 157 (251)
T COG0396 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQ 157 (251)
T ss_pred HHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHH
Confidence 11 1122211 00 000 01111 13343 48999999999999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhc-CcEEEEEcCeEEE
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIM-NPSLEMLIGGVQN 325 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~-dril~l~~G~I~~ 325 (660)
+++++|++.|||||-+|||..+.+.+ ++.|.+++++||...+++.+. |.+.++.+|+|..
T Consensus 158 ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 158 LLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred HHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 99999999999999999999987664 678999999999999988765 8999999999865
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.74 E-value=6.3e-18 Score=208.46 Aligned_cols=145 Identities=17% Similarity=0.227 Sum_probs=112.9
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC---CC---------------CeEEEEcCCCcccc------
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND---YK---------------KRVMIVDTSSEIGG------ 235 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~---~G---------------krV~~Vdq~~eIa~------ 235 (660)
.+|+++ +++|++++|+|||||||||||++|+|.+.++ .| +.++|+.|...+..
T Consensus 179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E 258 (1470)
T PLN03140 179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE 258 (1470)
T ss_pred eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence 577777 8999999999999999999999999998765 22 34778877642210
Q ss_pred -------CCCC--------------------C---------------------------CCCCCc-------cccCCCCC
Q 038101 236 -------NGDI--------------------P---------------------------HPGIGN-------ARRMQVPN 254 (660)
Q Consensus 236 -------~~~i--------------------p---------------------------~~~Lg~-------~rrl~vLS 254 (660)
+... | ..++.. ...+..+|
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 0000 0 012322 12345799
Q ss_pred HHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcCh-hHHHHhcCcEEEEEcCeEEE
Q 038101 255 SEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGV-TIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 255 gG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~-~l~~~i~dril~l~~G~I~~ 325 (660)
||||||+.||++++.+|++|++||||+|||...+..+ ++ .|.|+|+++|+. ..+..++|+++.+..|++.+
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy 418 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVY 418 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEE
Confidence 9999999999999999999999999999999997775 23 589999999985 46778999999999999876
Q ss_pred Ee
Q 038101 326 VT 327 (660)
Q Consensus 326 V~ 327 (660)
.+
T Consensus 419 ~G 420 (1470)
T PLN03140 419 QG 420 (1470)
T ss_pred eC
Confidence 43
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.74 E-value=1.3e-17 Score=205.28 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=110.1
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc----cCCC-----------------CeEEEEcCCCcccc---
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA----NDYK-----------------KRVMIVDTSSEIGG--- 235 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~----p~~G-----------------krV~~Vdq~~eIa~--- 235 (660)
.+|+++ +++|++++|+||||||||||||+|+|.+. +..| +.++|+.|...+..
T Consensus 75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT 154 (1394)
T TIGR00956 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT 154 (1394)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence 466666 88999999999999999999999999862 2222 23777777542210
Q ss_pred ----------CC-------CCC--------------CCCCCcc-------ccCCCCCHHHHHHHHHHHHHccCCcEEEEe
Q 038101 236 ----------NG-------DIP--------------HPGIGNA-------RRMQVPNSEMQHKVLIEAVENHMPQVIVID 277 (660)
Q Consensus 236 ----------~~-------~ip--------------~~~Lg~~-------rrl~vLSgG~qqrv~IA~aL~~~P~VLILD 277 (660)
.. .+. ..++... ..+..+|||||||+.||++++.+|+||++|
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 00 000 0123221 123569999999999999999999999999
Q ss_pred CCCCCccHHHHHHH-------Hh-cCCEEEEEEcCh-hHHHHhcCcEEEEEcCeEEEEe
Q 038101 278 EIGTKLEAMAASTI-------AQ-RGIQLVATAHGV-TIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 278 EPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~-~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+|||+.++..+ ++ .|.|+|+++|+. +.+..++|+++.+..|++.+.+
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999987765 33 599999999996 5777899999999999987643
No 367
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=5e-18 Score=186.41 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=114.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc---ccCCCCeEEEEcC--------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL---ANDYKKRVMIVDT-------- 229 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL---~p~~GkrV~~Vdq-------- 229 (660)
-+.+.+++..||.+ .+|.+- +..|.-+||+|+||+|||||||+|+.-- -+... .+.-+++
T Consensus 80 Di~~~~fdLa~G~k-----~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veq-E~~g~~t~~~~~~l~ 153 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGK-----ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQ-EVRGDDTEALQSVLE 153 (582)
T ss_pred ceeeeeeeeeecch-----hhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchh-heeccchHHHhhhhh
Confidence 45688999999976 666544 8899999999999999999999999711 11100 0100110
Q ss_pred -----------CCccccC---C-----CCCCCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHH
Q 038101 230 -----------SSEIGGN---G-----DIPHPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMA 287 (660)
Q Consensus 230 -----------~~eIa~~---~-----~ip~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a 287 (660)
..++... . -+...++.. .+.+..+|||.|-|++||||+..+||+|+|||||+.||..+
T Consensus 154 ~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 154 SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence 0000000 0 000112221 24667899999999999999999999999999999999999
Q ss_pred HHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 288 ASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 288 ~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
...+ ...+.|+|+++||..+.+.+|..|+....-++.+
T Consensus 234 v~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~ 275 (582)
T KOG0062|consen 234 VAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDY 275 (582)
T ss_pred HHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhh
Confidence 8776 5678999999999999999999998887766543
No 368
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.72 E-value=3.9e-17 Score=180.31 Aligned_cols=158 Identities=20% Similarity=0.229 Sum_probs=122.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIG------ 234 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa------ 234 (660)
.+.+.++++.|.+. .+++|. +..|+.++|+|+|||||||+|++|++-..|..- ++.+..-+.++.
T Consensus 75 dvk~~sls~s~~g~-----~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-~~d~y~ls~e~~ps~~~a 148 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV-----ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-HIDFYLLSREIEPSEKQA 148 (614)
T ss_pred cceeeeeeeccCCc-----eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-ccchhhhcccCCCchHHH
Confidence 35699999999887 788887 899999999999999999999999999877532 233322222110
Q ss_pred ------------------------cCCCCCC--------------------------CCCCc-----cccCCCCCHHHHH
Q 038101 235 ------------------------GNGDIPH--------------------------PGIGN-----ARRMQVPNSEMQH 259 (660)
Q Consensus 235 ------------------------~~~~ip~--------------------------~~Lg~-----~rrl~vLSgG~qq 259 (660)
.+.+..+ .+++- .+.+..+|+|++.
T Consensus 149 v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 149 VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 0000000 01221 2566789999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCC-EEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGI-QLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~Gv-tVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++||+++..+|++|+|||||++||..++..+ ++... ++|+++|..++.+.+|..|+-+..++..+..
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 99999999999999999999999999998776 45555 8999999999999999999999999865544
No 369
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=6.7e-17 Score=162.73 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=60.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
.+...+|+||+||++||++++ .+|+++|+|||+++||+.++..+ ...|.++|+++|..+ ...+||+++.
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~ 232 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYG 232 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEE
Confidence 355779999999999999996 35899999999999999998776 224888998999876 4578999988
Q ss_pred EEcC
Q 038101 318 MLIG 321 (660)
Q Consensus 318 l~~G 321 (660)
+...
T Consensus 233 l~~~ 236 (243)
T cd03272 233 VKFR 236 (243)
T ss_pred EEEE
Confidence 8653
No 370
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.71 E-value=7.2e-17 Score=184.64 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=122.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC---C---------------CCe
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND---Y---------------KKR 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~---~---------------Gkr 223 (660)
+...+++............+|+++ +++|++++|+||+||||||||++|+|..... . .+.
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 456677776654422345788888 8999999999999999999999999998753 1 135
Q ss_pred EEEEcCCCccccC------------CCCCC-----------------CCCCcc--ccC-----CCCCHHHHHHHHHHHHH
Q 038101 224 VMIVDTSSEIGGN------------GDIPH-----------------PGIGNA--RRM-----QVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 224 V~~Vdq~~eIa~~------------~~ip~-----------------~~Lg~~--rrl-----~vLSgG~qqrv~IA~aL 267 (660)
++||.|.+-+.+. -.+|. +++... ..+ ..+|||+|+|++||.=+
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 7888877643210 01111 122211 223 35899999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChh-HHHHhcCcEEEEEcCeEEEEe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVT-IENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~-l~~~i~dril~l~~G~I~~V~ 327 (660)
.++|.||++||||+|||...+..+ ++.|.|||+|-|..+ .+-.+-|+++.+..|+..+.+
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 999999999999999999987554 667999999999875 344578999999999887644
No 371
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=1e-16 Score=160.69 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=97.0
Q ss_pred EEEEeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCeEEEEcCCCcc------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLAND----YKKRVMIVDTSSEI------ 233 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~----~GkrV~~Vdq~~eI------ 233 (660)
+++.|+- .|+.. .+++++ . ++++|+||||||||||+++|...+... .+++++++.+....
T Consensus 6 l~l~nfk-~~~~~-----~~l~~~~~---~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 76 (212)
T cd03274 6 LVLENFK-SYAGE-----QVIGPFHK---SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDS 76 (212)
T ss_pred EEEECcc-cCCCC-----eeeccCCC---CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCce
Confidence 4455555 56554 566655 3 799999999999999999998442211 01112222111100
Q ss_pred -------ccC--------CCCC---------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc----CCcEEEEe
Q 038101 234 -------GGN--------GDIP---------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH----MPQVIVID 277 (660)
Q Consensus 234 -------a~~--------~~ip---------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~----~P~VLILD 277 (660)
... .++. ..++.. .++...+|+|||||++||++++. .|+++++|
T Consensus 77 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililD 156 (212)
T cd03274 77 CSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMD 156 (212)
T ss_pred EEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEc
Confidence 000 0000 011221 23567799999999999999963 47999999
Q ss_pred CCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 278 EIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 278 EPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
||+++||+.....+. ..+.++|++||+.. +..+||+++.+..
T Consensus 157 EPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~-~~~~~d~v~~~~~ 204 (212)
T cd03274 157 EIDAALDFRNVSIVANYIKERTKNAQFIVISLRNN-MFELADRLVGIYK 204 (212)
T ss_pred CCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHH-HHHhCCEEEEEEe
Confidence 999999999987762 35789999999965 5578999988864
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.70 E-value=3.1e-16 Score=162.52 Aligned_cols=77 Identities=12% Similarity=0.158 Sum_probs=67.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHccC---CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHM---PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~---P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+....||+||+||+.||++++.+ |+++|+|||+++||+..+..+ .+.|.|||+++|+.+++. .||+++.
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~ 243 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIID 243 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE
Confidence 45678999999999999999996 799999999999999997765 456999999999999886 6999999
Q ss_pred E------EcCeEEE
Q 038101 318 M------LIGGVQN 325 (660)
Q Consensus 318 l------~~G~I~~ 325 (660)
+ ..|++.+
T Consensus 244 Lgp~~g~~~G~iv~ 257 (261)
T cd03271 244 LGPEGGDGGGQVVA 257 (261)
T ss_pred ecCCcCCCCCEEEE
Confidence 9 6777654
No 373
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.70 E-value=8.7e-17 Score=158.82 Aligned_cols=127 Identities=14% Similarity=0.204 Sum_probs=91.7
Q ss_pred ccCCc-EEEEEcCCCCcHHHHHHHHH--------hccccCCC-CeEEEEcCCCccccCCCCCCCCCC--ccccCCCCCHH
Q 038101 189 VQDGA-SLLFIGPPGVGKTTIIREIA--------RVLANDYK-KRVMIVDTSSEIGGNGDIPHPGIG--NARRMQVPNSE 256 (660)
Q Consensus 189 I~~Ge-~ilIlGPnGsGKTTLLR~Ia--------glL~p~~G-krV~~Vdq~~eIa~~~~ip~~~Lg--~~rrl~vLSgG 256 (660)
+..|+ .++|+||||+|||||||.|+ |...|... ..++++++... ..+.. ....+..+|+|
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~--------~lg~~~~l~~~~s~fs~g 95 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFA--------DIGDEQSIEQSLSTFSSH 95 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEE--------ecCchhhhhcCcchHHHH
Confidence 66774 79999999999999999998 44333211 12333333211 11111 01345678999
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 257 MQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 257 ~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
|+|+..++++ +.+|+++++|||++++|+.....+ .+.|.++|++||+.. ...+|++++.+..|.+..
T Consensus 96 ~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 96 MKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE-LKAYAYKREGVENASMEF 170 (200)
T ss_pred HHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH-HHHHHhcCCCeEEEEEEE
Confidence 9999999877 589999999999999999875543 346899999999855 557899999998888754
No 374
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1e-16 Score=174.98 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=120.9
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|+++.|... ..+|+|+ +.+|+.++|+||+|+||||+||.|-|+.....|
T Consensus 536 G~i~fsnvtF~Y~p~----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPG----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred CeEEEEEeEEecCCC----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 357899999999765 2688988 899999999999999999999999999866543
Q ss_pred CeEEEEcCCCccccC---CCCC--CC---------------------CCCc--cccC----CCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN---GDIP--HP---------------------GIGN--ARRM----QVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---~~ip--~~---------------------~Lg~--~rrl----~vLSgG~qqrv~IA~aL~~ 269 (660)
+.||+|+|..-+..+ +++. .+ ++.+ +.++ -.+|||+||||+|||++..
T Consensus 612 s~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred HhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 346777765432211 0000 00 0000 1122 2489999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
.|.+|++||.|++||....+.+ ...+.|-|+++|.++.+- .+|-++.+.+|+|.+
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv-nAD~ILvi~~G~IvE 752 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV-NADLILVISNGRIVE 752 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee-cccEEEEEeCCeEee
Confidence 9999999999999999876665 235889999999998753 599999999999865
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.69 E-value=3.8e-16 Score=176.40 Aligned_cols=153 Identities=22% Similarity=0.371 Sum_probs=116.8
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcCCC
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDTSS 231 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq~~ 231 (660)
+..+.++||+..-+.. ...++++ +.+|+.++|.|+||||||||+|+|||+.+...|+ ++.|++|..
T Consensus 390 ~~~i~~~nl~l~~p~~----~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~P 465 (604)
T COG4178 390 DHGITLENLSLRTPDG----QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRP 465 (604)
T ss_pred cceeEEeeeeEECCCC----CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCC
Confidence 5778999999987654 2567766 8999999999999999999999999999876543 467777776
Q ss_pred ccccC-----CCCCCC----------------CCCc-------ccc-CCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 038101 232 EIGGN-----GDIPHP----------------GIGN-------ARR-MQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 232 eIa~~-----~~ip~~----------------~Lg~-------~rr-l~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsg 282 (660)
.+..- -.+|.. ++++ ..+ -++||+|+|||+++||++.|+|++++|||-|++
T Consensus 466 Y~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 466 YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred CCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 55311 011211 2221 111 257999999999999999999999999999999
Q ss_pred ccHHHHHHH----Hh--cCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 283 LEAMAASTI----AQ--RGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 283 LD~~a~~~i----~~--~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
||+.....+ .+ .++|||.+.|...+.. +.++.+.+.
T Consensus 546 LDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l~ 587 (604)
T COG4178 546 LDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLELL 587 (604)
T ss_pred cChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheeec
Confidence 999987776 34 6999999999988765 455544443
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-16 Score=155.53 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=113.3
Q ss_pred eEEEEeEEEEECcccccc--ccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc------
Q 038101 164 KGAIIGLTCRVGRAVSGS--ANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE------ 232 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~--a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e------ 232 (660)
.+.++|++|.|-=...+. ..+++++ ++.||++++-||+|+|||||||+|-+.+.++.|+ |.+-.+..-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~-I~v~H~g~~vdl~~a 82 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ-ILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCce-EEEEeCcchhhhhcc
Confidence 466788888773222222 2467776 8999999999999999999999999999999774 322111110
Q ss_pred ------------ccc----CCCCCC-------------------------------CCCCc---cccCCCCCHHHHHHHH
Q 038101 233 ------------IGG----NGDIPH-------------------------------PGIGN---ARRMQVPNSEMQHKVL 262 (660)
Q Consensus 233 ------------Ia~----~~~ip~-------------------------------~~Lg~---~rrl~vLSgG~qqrv~ 262 (660)
|++ ...+|. .++.+ ......+|||+||||-
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 010 011121 01111 0123568999999999
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
||+.++.+-.+|+|||||+.||...+..+ +.+|..+|.+-||.+.-+.+||+++-+.
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999875543 6789999999999999999999997653
No 377
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.67 E-value=3.7e-16 Score=155.57 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=91.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHH----hccccCCC---------------CeEEEEcCCCc-----ccc----CCCC-
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIA----RVLANDYK---------------KRVMIVDTSSE-----IGG----NGDI- 239 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Ia----glL~p~~G---------------krV~~Vdq~~e-----Ia~----~~~i- 239 (660)
+..| +++|+||||+||||||++|. |...++.+ ..|.++.+... +.. ...+
T Consensus 20 ~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 20 FFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 5556 99999999999999999995 66655432 13444444331 000 0000
Q ss_pred --CCCCCCc--cccCCCCCHHHHHH------HHHHHHHccCCcEEEEeCCCCCccHHHHH-HH-------Hhc-CCEEEE
Q 038101 240 --PHPGIGN--ARRMQVPNSEMQHK------VLIEAVENHMPQVIVIDEIGTKLEAMAAS-TI-------AQR-GIQLVA 300 (660)
Q Consensus 240 --p~~~Lg~--~rrl~vLSgG~qqr------v~IA~aL~~~P~VLILDEPgsgLD~~a~~-~i-------~~~-GvtVI~ 300 (660)
+...+.. .+....+|+||+|+ ++++++++.+|++|++|||+++||+..+. .+ .+. |.+||+
T Consensus 99 ~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iii 178 (204)
T cd03240 99 FCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIV 178 (204)
T ss_pred eechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEE
Confidence 0000000 13567899999996 67889999999999999999999998877 54 233 889999
Q ss_pred EEcChhHHHHhcCcEEEEEcC
Q 038101 301 TAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 301 TtH~~~l~~~i~dril~l~~G 321 (660)
+||+.++.. .||+++.+...
T Consensus 179 itH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 179 ITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEecHHHHh-hCCEEEEEeeC
Confidence 999998775 69999877543
No 378
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.66 E-value=3.7e-17 Score=149.92 Aligned_cols=93 Identities=19% Similarity=0.381 Sum_probs=66.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEcCCCccccCCC------------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------RVMIVDTSSEIGGNGD------------ 238 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------rV~~Vdq~~eIa~~~~------------ 238 (660)
+.+|++++|+|+||||||||+++|+|++.+..|. .++++++...+.....
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~ 87 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENESDERIEE 87 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHHHHHHHH
T ss_pred EcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7789999999999999999999999999886442 2444444321110000
Q ss_pred -CCCCCCCc--cc----cCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 239 -IPHPGIGN--AR----RMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 239 -ip~~~Lg~--~r----rl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
+...++.. .+ +...+|+|||||++||++++.+|++||+||||+
T Consensus 88 ~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 88 VLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 00011111 12 337899999999999999999999999999985
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.66 E-value=1.3e-15 Score=155.17 Aligned_cols=71 Identities=13% Similarity=0.154 Sum_probs=59.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+++..+|+|||||++||++++ ..|+++|+|||+++||+.....+ ...|.++|++||..+..+ .||+++.
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~ 240 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFR 240 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEE
Confidence 356789999999999999997 47899999999999999987776 135899999999966555 6999976
Q ss_pred EE
Q 038101 318 ML 319 (660)
Q Consensus 318 l~ 319 (660)
+.
T Consensus 241 ~~ 242 (251)
T cd03273 241 TR 242 (251)
T ss_pred EE
Confidence 65
No 380
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=2.1e-15 Score=182.64 Aligned_cols=168 Identities=15% Similarity=0.240 Sum_probs=129.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++.||... ...+|+++ |++||-+||+|+.|||||||+.+|-|+..+..|
T Consensus 1137 G~I~f~~~~~RYrp~---lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPN---LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred CeEEEEEeEEEeCCC---CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 358999999999765 33688988 999999999999999999999999999987655
Q ss_pred CeEEEEcCCCcccc-C--CCC-CC-------------------------CCCCccccC----CCCCHHHHHHHHHHHHHc
Q 038101 222 KRVMIVDTSSEIGG-N--GDI-PH-------------------------PGIGNARRM----QVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 krV~~Vdq~~eIa~-~--~~i-p~-------------------------~~Lg~~rrl----~vLSgG~qqrv~IA~aL~ 268 (660)
.++++|+|..-+.. . .++ |. .++. ..+ ..+|-||||.+++|||+.
T Consensus 1214 srlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld--~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLD--SEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred hcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCC--ceecCCCccCChHHHHHHHHHHHHh
Confidence 35666777654321 0 000 00 0111 112 248999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHH----HHHHh--cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHH
Q 038101 269 HMPQVIVIDEIGTKLEAMAA----STIAQ--RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTV 342 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~----~~i~~--~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~I 342 (660)
.+.+||||||.|++.|+..- +++++ .++|||.++|..+.+. -||++++|+.|++.+.. ++.++
T Consensus 1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-d~DrVlVld~G~v~Efd----------sP~~L 1360 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-DSDRVLVLDAGRVVEFD----------SPAEL 1360 (1381)
T ss_pred ccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-hcCeEEEeeCCeEeecC----------ChHHH
Confidence 99999999999999999873 33433 5899999999998765 49999999999997754 56677
Q ss_pred Hhhc
Q 038101 343 LERK 346 (660)
Q Consensus 343 ler~ 346 (660)
+.+.
T Consensus 1361 l~~~ 1364 (1381)
T KOG0054|consen 1361 LSDK 1364 (1381)
T ss_pred HhCC
Confidence 7554
No 381
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=4.9e-16 Score=167.87 Aligned_cols=164 Identities=14% Similarity=0.229 Sum_probs=121.8
Q ss_pred cccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEc
Q 038101 159 AIRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVD 228 (660)
Q Consensus 159 ~irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vd 228 (660)
.+..+.+-+.++|+.|... ..++..+ |.-...++|+||||+||||||+.|.|-+.|..| -+||+++
T Consensus 581 ~L~PPvLGlH~VtFgy~gq----kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~Fd 656 (807)
T KOG0066|consen 581 KLNPPVLGLHDVTFGYPGQ----KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFD 656 (807)
T ss_pred CCCCCeeecccccccCCCC----CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechh
Confidence 3566678899999999543 1555555 666789999999999999999999999998754 3689988
Q ss_pred CCCc--cc----------cCCCCCC---------CCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 229 TSSE--IG----------GNGDIPH---------PGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 229 q~~e--Ia----------~~~~ip~---------~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
+... +. ....+|+ +++.. .-.+..|||||+.||++|-.-+..|+||||||||++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 7531 10 0123333 12221 13457799999999999999999999999999999999
Q ss_pred HHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 285 AMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 285 ~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+.++..+ .+..-.||+++||..++.......+++.+.+|..+
T Consensus 737 IESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 737 IESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEI 782 (807)
T ss_pred hhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhc
Confidence 9987766 45567899999998876655445556655555443
No 382
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=8.1e-16 Score=167.32 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=113.0
Q ss_pred eEEEEeEEEEECcccccccccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----CeEEEEcCCCccccCCC-
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYK----KRVMIVDTSSEIGGNGD- 238 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----krV~~Vdq~~eIa~~~~- 238 (660)
..+..++++.||.... ++=.+-+..||+++++||||.||||+.++|||.+.|+.| -+|.|-+|.-.-...+.
T Consensus 342 lv~y~~~~k~~g~F~L---~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV 418 (591)
T COG1245 342 LVEYPDLKKTYGDFKL---EVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTV 418 (591)
T ss_pred eeecchheeecCceEE---EecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcH
Confidence 3445566666665400 111122788899999999999999999999999999977 45666555311100000
Q ss_pred ---------------------CCCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----
Q 038101 239 ---------------------IPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI---- 291 (660)
Q Consensus 239 ---------------------ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i---- 291 (660)
+.-+.+.. .++++.||||+-||++||++|..+.|+.+||||.+.||...+..+
T Consensus 419 ~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred HHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence 00112221 267889999999999999999999999999999999999875443
Q ss_pred ----HhcCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 292 ----AQRGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 292 ----~~~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
.+.+.+.+++-||.-+++.++|++++..
T Consensus 499 RR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 499 RRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 4678999999999999999999997764
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.62 E-value=5.2e-16 Score=171.51 Aligned_cols=161 Identities=15% Similarity=0.215 Sum_probs=122.3
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------eEEEEcC
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-------RVMIVDT 229 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-------rV~~Vdq 229 (660)
+-.+.+.+.|++++|... ..++.++ ++.++-++++|||||||||||+.|.|.+.|..|. ++.+..|
T Consensus 385 ~p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q 460 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ 460 (614)
T ss_pred CCCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh
Confidence 445678899999999765 1355665 8889999999999999999999999999998663 1221122
Q ss_pred CCc--ccc--------CCCCC-------------CCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCc
Q 038101 230 SSE--IGG--------NGDIP-------------HPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKL 283 (660)
Q Consensus 230 ~~e--Ia~--------~~~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgL 283 (660)
..- ... +..++ ..++.. ...+..||.|||.||.+|+..+..|.+|||||||++|
T Consensus 461 h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 110 000 00011 113321 2467889999999999999999999999999999999
Q ss_pred cHHHHHHHH----hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 284 EAMAASTIA----QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 284 D~~a~~~i~----~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
|...+..++ +.--+||++|||.-++..+++.++...+|.+.
T Consensus 541 Di~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 541 DIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred CchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 999877763 34568999999999999999999999888864
No 384
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=3.4e-15 Score=180.83 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=127.2
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCcc
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----KRVMIVDTSSEI 233 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----krV~~Vdq~~eI 233 (660)
+..++++|.++..+.. +....|+|+ +++|+.++|+|+.|||||+||.+|.|.+....| ..++|++|..-|
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh
Confidence 3457889999998763 333488888 899999999999999999999999999987655 258899987543
Q ss_pred c----------c--------------C---CCCCCCCCCccc----cCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 038101 234 G----------G--------------N---GDIPHPGIGNAR----RMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 234 a----------~--------------~---~~ip~~~Lg~~r----rl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsg 282 (660)
. | | .++..+.-|+.. +=-.||||||||+.+|||...+.|+++||.|.++
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 1 1 1 011111112211 2236999999999999999999999999999999
Q ss_pred ccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 283 LEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 283 LD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|+...+.+ .-+++|+|++||...... .+|.+++|.+|+|...+
T Consensus 674 VDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~G 724 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIVESG 724 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEeccc
Confidence 999987776 346899999999887664 69999999999997654
No 385
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.8e-15 Score=162.00 Aligned_cols=165 Identities=19% Similarity=0.322 Sum_probs=124.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.+.+.++++.|... ..+|.++ +..|+.++++|++|+||||++|.|-|.+.+..|.
T Consensus 262 ~v~F~~V~F~y~~~----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 262 AVAFINVSFAYDPR----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred eEEEEEEEeecccc----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHH
Confidence 45688999999654 3678777 8999999999999999999999999999888662
Q ss_pred eEEEEcCCCccccC-------------------------------CCCCC---CCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 223 RVMIVDTSSEIGGN-------------------------------GDIPH---PGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------------------------~~ip~---~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
.|++++|+.-+..+ ..+|. ..+|+ +---+|||+|||++|||++.
T Consensus 338 aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vge--rglklSggekqrvaiar~il 415 (497)
T COG5265 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE--RGLKLSGGEKQRVAIARTIL 415 (497)
T ss_pred HhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccch--heeeccCchHHHHHHHHHHh
Confidence 23444443321100 00110 01111 11247999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHH
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTV 342 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~I 342 (660)
.+|.+|++||.|++||...-+.+ ...|.|-++++|.++.+- -+|.++++.+|+|.+ +|+-+++
T Consensus 416 k~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~-~adeiivl~~g~i~e----------rg~h~~l 484 (497)
T COG5265 416 KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII-DADEIIVLDNGRIVE----------RGTHEEL 484 (497)
T ss_pred cCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhcc-CCceEEEeeCCEEEe----------cCcHHHH
Confidence 99999999999999999886665 357999999999998764 499999999999865 3455666
Q ss_pred Hhh
Q 038101 343 LER 345 (660)
Q Consensus 343 ler 345 (660)
+.+
T Consensus 485 l~~ 487 (497)
T COG5265 485 LAA 487 (497)
T ss_pred HHc
Confidence 654
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.60 E-value=6.6e-15 Score=163.60 Aligned_cols=157 Identities=17% Similarity=0.173 Sum_probs=118.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.+++++++.. ..++|+ +.+||+++|.|--|+|+|-|+++|.|..+...|
T Consensus 263 ~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~ 333 (500)
T COG1129 263 VLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333 (500)
T ss_pred EEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHH
Confidence 4556666643 234444 899999999999999999999999997765533
Q ss_pred CeEEEEcCCCccccC---------------CCCC-C------------------CCCC---ccccCCCCCHHHHHHHHHH
Q 038101 222 KRVMIVDTSSEIGGN---------------GDIP-H------------------PGIG---NARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 222 krV~~Vdq~~eIa~~---------------~~ip-~------------------~~Lg---~~rrl~vLSgG~qqrv~IA 264 (660)
..++|+++...-.+. ..+. . +++. ....+..||||.||++.|+
T Consensus 334 ~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred cCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHH
Confidence 135666654321110 0000 0 0010 0134567999999999999
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecC
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLG 329 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lg 329 (660)
+.+..+|+||||||||.|.|.-+..++ +..|++||++|-++.++..+||++++|..|++......
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999999999987765 67899999999999999999999999999999775533
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=1e-14 Score=144.77 Aligned_cols=127 Identities=9% Similarity=0.086 Sum_probs=86.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCC-----C-------------CeEEEEcCCCcccc--CCCCC--------CCCCC
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDY-----K-------------KRVMIVDTSSEIGG--NGDIP--------HPGIG 245 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~-----G-------------krV~~Vdq~~eIa~--~~~ip--------~~~Lg 245 (660)
+.+|+||||+||||||.+|.-.+.... + ..|.+..+...+.. ..... ...-.
T Consensus 23 l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (198)
T cd03276 23 VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMARSFLTSNKA 102 (198)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHHHHHhccccc
Confidence 779999999999999999975443220 1 12222222211111 00000 00111
Q ss_pred ccccCCCCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCccHHHHHHH-------Hhc---CCEEEEEEcChhHHHHh
Q 038101 246 NARRMQVPNSEMQHKVLIEAVE----NHMPQVIVIDEIGTKLEAMAASTI-------AQR---GIQLVATAHGVTIENLI 311 (660)
Q Consensus 246 ~~rrl~vLSgG~qqrv~IA~aL----~~~P~VLILDEPgsgLD~~a~~~i-------~~~---GvtVI~TtH~~~l~~~i 311 (660)
..+++..+|+||||++.|++++ +++|+++|+|||+++||+.....+ .+. +.+||+++|+++.+..+
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence 1246778999999999999999 689999999999999999986654 222 35899999999988765
Q ss_pred cCcEEEEEcC
Q 038101 312 MNPSLEMLIG 321 (660)
Q Consensus 312 ~dril~l~~G 321 (660)
|++.++..+
T Consensus 183 -d~v~~~~~~ 191 (198)
T cd03276 183 -DDVKVFRMK 191 (198)
T ss_pred -cceeEEEec
Confidence 888777654
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=5.1e-15 Score=150.93 Aligned_cols=70 Identities=10% Similarity=0.097 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHHccC----CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 250 MQVPNSEMQHKVLIEAVENHM----PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 250 l~vLSgG~qqrv~IA~aL~~~----P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+..+|+||||+++|+++++.+ |+++|+|||+++||+..+..+ ++.|.++|++||+.++. ..||+++.+
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~ 231 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGV 231 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEE
Confidence 367899999999999999864 899999999999999876665 33489999999998765 579999877
Q ss_pred Ec
Q 038101 319 LI 320 (660)
Q Consensus 319 ~~ 320 (660)
..
T Consensus 232 ~~ 233 (247)
T cd03275 232 YR 233 (247)
T ss_pred Ee
Confidence 54
No 389
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=159.29 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=117.6
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------CeEEEE
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------KRVMIV 227 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------krV~~V 227 (660)
.+..+++++|+..-... ...+++++ |.+|++++|.||||||||+|+|.|+|+.....| +.+.|+
T Consensus 430 ~Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lffl 506 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFL 506 (659)
T ss_pred ccceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEe
Confidence 44568899998875442 12355666 899999999999999999999999999985533 348888
Q ss_pred cCCCcccc--CC---CCCC---------------------C----------CCCc---cccCCCCCHHHHHHHHHHHHHc
Q 038101 228 DTSSEIGG--NG---DIPH---------------------P----------GIGN---ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 228 dq~~eIa~--~~---~ip~---------------------~----------~Lg~---~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+|+.-+.. .. -+|. . ++.. ..-+++||+|+|||+++||.+.
T Consensus 507 PQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 507 PQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred cCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 88764421 00 0110 0 1110 1235689999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
|+|++-||||-|+++|...-..+ .+.|+|.|.+.|..++. .+.|-++.+..+
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-KFHDYVLRMDGR 642 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-hhhhEEEEecCC
Confidence 99999999999999988765544 78899999999999864 567888777653
No 390
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.54 E-value=3e-14 Score=136.59 Aligned_cols=126 Identities=14% Similarity=0.199 Sum_probs=85.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.++.+++|+||||+||||+++.|+-.+....++ +.. ..++.....++...+.-......+|+||++++.+++++.
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~-~~~---~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~ 93 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSA-TRR---RSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILA 93 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchh-hhc---cCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHH
Confidence 3445699999999999999999987665443221 100 111100000110000000112358999999999999998
Q ss_pred c----CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 269 H----MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 269 ~----~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
. +|+++++|||++++|+.....+ ...|.++|++||+.++.. .+|+++.+.
T Consensus 94 ~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 94 LASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred hcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 6 7899999999999999886654 233789999999999876 578887764
No 391
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.54 E-value=2.4e-14 Score=141.56 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=86.7
Q ss_pred ccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccc-cCCCCeEEEEcC-CCccccCC-CCCCCCCCc--cccCCCCCHHH
Q 038101 184 LLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLA-NDYKKRVMIVDT-SSEIGGNG-DIPHPGIGN--ARRMQVPNSEM 257 (660)
Q Consensus 184 iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-p~~GkrV~~Vdq-~~eIa~~~-~ip~~~Lg~--~rrl~vLSgG~ 257 (660)
+..++ +..|+.++|+||||+||||||++|++..- ...|. +++. ...++... .+.+.+... ...+..++.++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~---~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~ 96 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC---FVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAEL 96 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC---CccccccccCCcCEEEEEecCcccccCCceeHHHHH
Confidence 33455 78889999999999999999999994331 11221 1111 11111110 011111111 12334556676
Q ss_pred HHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 258 QHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 258 qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
+| +..+..+..+|+++|+|||++++|+.....+ .+.|.++|++||+.++.. .++++..+..+.+.
T Consensus 97 ~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~ 169 (202)
T cd03243 97 LE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD-LPEQVPGVKNLHME 169 (202)
T ss_pred HH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH-HhhcCCCeEEEEEE
Confidence 65 5555677889999999999999999754432 456899999999988766 56666666666654
No 392
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.53 E-value=1e-13 Score=135.66 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCc---------ccc---CCCCCCCCCCccccCCCCCHH
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYK-----KRVMIVDTSSE---------IGG---NGDIPHPGIGNARRMQVPNSE 256 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~G-----krV~~Vdq~~e---------Ia~---~~~ip~~~Lg~~rrl~vLSgG 256 (660)
+.+|+||||+|||++|.+|.-.+..... ..+........ +.. ...+|+- .....+|+|
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~-----~~~~~LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQG-----KVEQILSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCC-----cCcccCCHH
Confidence 8999999999999999999755432110 00000000000 000 0112221 223459999
Q ss_pred HHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 257 MQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 257 ~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
|+|++.++++++ .+|+++++|||++++|+.....+ ++.|.++|++||+.+... .+|+++.+..
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 999999999985 68999999999999999987664 345799999999998775 7999887754
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.53 E-value=6.4e-14 Score=140.33 Aligned_cols=162 Identities=23% Similarity=0.317 Sum_probs=122.7
Q ss_pred cccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE------cC
Q 038101 159 AIRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV------DT 229 (660)
Q Consensus 159 ~irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~V------dq 229 (660)
+.++..++++|+++.|... ..++-|+ +..|.-.+++|.||+||||||+.|+|---...+ .|.+. |+
T Consensus 8 ~~~~~aievsgl~f~y~~~----dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~-~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 8 AVSDFAIEVSGLQFKYKVS----DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG-VVQVLGRSAFHDT 82 (291)
T ss_pred hcccceEEEeccEEecccC----CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCC-eEEEcCcCccccc
Confidence 3456778999999999654 2567776 889999999999999999999999986433222 12111 11
Q ss_pred CCc-------ccc--------CCCCCC---------------------------CCCCccccCCCCCHHHHHHHHHHHHH
Q 038101 230 SSE-------IGG--------NGDIPH---------------------------PGIGNARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 230 ~~e-------Ia~--------~~~ip~---------------------------~~Lg~~rrl~vLSgG~qqrv~IA~aL 267 (660)
+-+ +++ .+.+|- .+|.-.-|+...|.||++||.|++.+
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred cccccCceeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhc
Confidence 100 000 011111 12332347788999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
.+.-+||+|||.|--||..|+..+ ..+|.|||..||..+=.+.+.+.++.+..|+++.
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999998776 3589999999999988889999999999999864
No 394
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.52 E-value=1.6e-13 Score=162.85 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=67.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHcc---CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENH---MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~---~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+.+..||+||+||+.||++++. +|+++|||||+++||+..+..+ .+.|.|||+++|+.+++. .||.++.
T Consensus 824 ~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD~ii~ 902 (924)
T TIGR00630 824 QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK-TADYIID 902 (924)
T ss_pred CccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE
Confidence 3457799999999999999997 5999999999999999987765 457999999999999885 6999999
Q ss_pred E------EcCeEEE
Q 038101 318 M------LIGGVQN 325 (660)
Q Consensus 318 l------~~G~I~~ 325 (660)
+ ..|++..
T Consensus 903 Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 903 LGPEGGDGGGTIVA 916 (924)
T ss_pred ecCCccCCCCEEEE
Confidence 9 5777754
No 395
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.51 E-value=2.7e-13 Score=161.31 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=68.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+.+..||+||+||+.||++++.+| +++|||||+++||+..+..+ .+.|.|||+++|+.+++. .||.++.
T Consensus 826 ~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~-~aD~ii~ 904 (943)
T PRK00349 826 QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK-TADWIID 904 (943)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 345679999999999999999999 99999999999999987765 457999999999999885 6999999
Q ss_pred E------EcCeEEEE
Q 038101 318 M------LIGGVQNV 326 (660)
Q Consensus 318 l------~~G~I~~V 326 (660)
+ ..|++...
T Consensus 905 Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 905 LGPEGGDGGGEIVAT 919 (943)
T ss_pred ecCCcCCCCCEEEEe
Confidence 9 57777653
No 396
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.49 E-value=2.8e-13 Score=168.12 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=67.7
Q ss_pred cCCCCCHHHHHHHHHHHHHc---cCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 249 RMQVPNSEMQHKVLIEAVEN---HMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~---~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
.+..||+||+||++||++++ ++|++||||||+++||+..+..+ .+.|.|||+++|+++++ .++|+++.|
T Consensus 806 ~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L 884 (1809)
T PRK00635 806 PLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLEL 884 (1809)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEE
Confidence 45679999999999999997 69999999999999999997765 45799999999999998 789999999
Q ss_pred E------cCeEEEEe
Q 038101 319 L------IGGVQNVT 327 (660)
Q Consensus 319 ~------~G~I~~V~ 327 (660)
. .|++...+
T Consensus 885 ~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 885 GPEGGNLGGYLLASC 899 (1809)
T ss_pred ccCCCCCCCEEEEeC
Confidence 5 56665543
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.2e-13 Score=152.31 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=123.6
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcC
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDT 229 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq 229 (660)
..++.++|..+++.|...-+ ..+.++ ++.-.-++++|+||+||||+++.+.+.+.|..| .+|++..|
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y---~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Q 434 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEY---QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQ 434 (582)
T ss_pred CCCCeeEEEeeeccCCCcch---hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhH
Confidence 56777899999999876511 244544 555678899999999999999999998887633 34444433
Q ss_pred CC---------ccc-----cCCCCC--------CCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 230 SS---------EIG-----GNGDIP--------HPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 230 ~~---------eIa-----~~~~ip--------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
.. .+. ..|..+ .+|+.. ...+..||||||-||++|++...+|.+|||||||+.||
T Consensus 435 hhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD 514 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD 514 (582)
T ss_pred hhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc
Confidence 21 000 001110 113322 13467899999999999999999999999999999999
Q ss_pred HHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 285 AMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 285 ~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
..+...+ .+-+-.||++||+.+++..+|+.+|...+|++..+-
T Consensus 515 ~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 515 RDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeee
Confidence 9987766 455668999999999999999999999999987654
No 398
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.46 E-value=7.2e-13 Score=131.89 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=76.6
Q ss_pred cccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCCCeEEEEcCC-CccccCCCCCCCCCCccccCCCCC--HHH
Q 038101 183 NLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLAN-DYKKRVMIVDTS-SEIGGNGDIPHPGIGNARRMQVPN--SEM 257 (660)
Q Consensus 183 ~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~GkrV~~Vdq~-~eIa~~~~ip~~~Lg~~rrl~vLS--gG~ 257 (660)
.++.++ +..|++++|+||||||||||||.|++...- ..|..| +.. ..+.....+++....+.-. ..+| ..+
T Consensus 15 ~v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v---~a~~~~~q~~~l~~~~~~~d~l~-~~~s~~~~e 90 (199)
T cd03283 15 RVANDIDMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV---CASSFELPPVKIFTSIRVSDDLR-DGISYFYAE 90 (199)
T ss_pred eecceEEEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE---ecCccCcccceEEEeccchhccc-cccChHHHH
Confidence 455677 788999999999999999999999986521 123322 111 0111000111111111000 0111 122
Q ss_pred HHHHHHHHHHcc--CCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHh
Q 038101 258 QHKVLIEAVENH--MPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLI 311 (660)
Q Consensus 258 qqrv~IA~aL~~--~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i 311 (660)
..++.-+..... +|++||+|||++++|+.....+ .+.|.++|++||+.+++..+
T Consensus 91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 244444444444 9999999999999998865432 45689999999999987765
No 399
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=7.3e-13 Score=134.03 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=91.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-EEcCCC-ccccCC-CCCCCCCCccccCCCCCHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM-IVDTSS-EIGGNG-DIPHPGIGNARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~-~Vdq~~-eIa~~~-~ip~~~Lg~~rrl~vLSgG~qqrv~IA~ 265 (660)
...+++++|.||||+||||+||.|+-..-- ..++ +++... .+.... -+...++.+ .....+|.+++++..+++
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~~~~~~~~~il~~~~l~d-~~~~~lS~~~~e~~~~a~ 102 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDSADIPIVDCILARVGASD-SQLKGVSTFMAEMLETAA 102 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCcccEEEeccceeEeeecccc-chhcCcChHHHHHHHHHH
Confidence 346789999999999999999998733110 0111 333221 111110 112223332 124678999999999999
Q ss_pred HH--ccCCcEEEEeCC---CCCccHHHHHHH-----Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 266 VE--NHMPQVIVIDEI---GTKLEAMAASTI-----AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 266 aL--~~~P~VLILDEP---gsgLD~~a~~~i-----~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++ +.+|+++|+||| |+++|..+.... .+ .|.++|++||. ..+..+|+++..+..|++...
T Consensus 103 il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~ 173 (222)
T cd03285 103 ILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTAL 173 (222)
T ss_pred HHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEE
Confidence 99 899999999999 778999875432 33 58999999996 555678999888888887543
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.44 E-value=3.6e-13 Score=147.02 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=106.1
Q ss_pred EEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE---E---E--cCCCccc-----
Q 038101 170 LTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM---I---V--DTSSEIG----- 234 (660)
Q Consensus 170 Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~---~---V--dq~~eIa----- 234 (660)
++-|||..- -.|..+ ..+|.+++|+||||.||||.++.|+|.+.|..|+-=. + + +...|+.
T Consensus 80 ~vHRYg~Ng----FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 80 VVHRYGVNG----FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred ceeeccCCc----eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 456776541 233344 7889999999999999999999999999998553100 0 0 0000000
Q ss_pred -------------cCCCCC-------------------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 235 -------------GNGDIP-------------------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 235 -------------~~~~ip-------------------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
....+| ++++.. .|.+..||||+-||++||+++..+.++.
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY 235 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVY 235 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEE
Confidence 000011 112222 2677889999999999999999999999
Q ss_pred EEeCCCCCccHHHHHH-------HHhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 275 VIDEIGTKLEAMAAST-------IAQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~-------i~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
++|||++.||...+-. +++.+..||++-||+...+.++|-+.++..
T Consensus 236 ~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 236 FFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred EEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 9999999999986443 345589999999999999999999877754
No 401
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.43 E-value=2.5e-13 Score=136.47 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=118.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY-------------------- 220 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~-------------------- 220 (660)
.+.|.||++.+... .|-.++++.+ +.+||+-+++|.+|||||-+.++|+|......
T Consensus 3 LLDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 3 LLDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred cccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 35677888887532 4555778777 89999999999999999999999999987541
Q ss_pred ------CCeEEEEcCCC--------cccc--CCCCCC----------C--------------CCCcc-----ccCCCCCH
Q 038101 221 ------KKRVMIVDTSS--------EIGG--NGDIPH----------P--------------GIGNA-----RRMQVPNS 255 (660)
Q Consensus 221 ------GkrV~~Vdq~~--------eIa~--~~~ip~----------~--------------~Lg~~-----rrl~vLSg 255 (660)
|+.|.+++|.. +++. ...+|. + |+.+. .....+..
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 22333333322 1110 011221 0 22211 23456788
Q ss_pred HHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 256 EMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 256 G~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
|+-|+||||.|++..|.+||.||||+.+|+..+.++ .+.|.+|++++||...+..+||++-++..|.-
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 899999999999999999999999999999887665 35799999999999999999999999998874
No 402
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=9.9e-14 Score=165.72 Aligned_cols=141 Identities=20% Similarity=0.282 Sum_probs=103.4
Q ss_pred ccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----------------CCCeEEEEcCCCcccc------
Q 038101 182 ANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND-----------------YKKRVMIVDTSSEIGG------ 235 (660)
Q Consensus 182 a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----------------~GkrV~~Vdq~~eIa~------ 235 (660)
.++|+++ +.+|-.++|+|++||||||||+.|||-..-+ ..+.+||+.|.+.--.
T Consensus 804 ~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrE 883 (1391)
T KOG0065|consen 804 RQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRE 883 (1391)
T ss_pred eEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHH
Confidence 3788888 9999999999999999999999999864322 1245677766542100
Q ss_pred ------CCCCCC-----------------CCCCcc--ccC----CCCCHHHHHHHHHHHHHccCC-cEEEEeCCCCCccH
Q 038101 236 ------NGDIPH-----------------PGIGNA--RRM----QVPNSEMQHKVLIEAVENHMP-QVIVIDEIGTKLEA 285 (660)
Q Consensus 236 ------~~~ip~-----------------~~Lg~~--rrl----~vLSgG~qqrv~IA~aL~~~P-~VLILDEPgsgLD~ 285 (660)
.-..|+ .++... .-+ ..||.+||+|+.|+.=|+.+| -+|+|||||+|||.
T Consensus 884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDs 963 (1391)
T KOG0065|consen 884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDS 963 (1391)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccH
Confidence 000010 012111 112 348999999999999999999 99999999999999
Q ss_pred HHHHHH-------HhcCCEEEEEEcChhH-HHHhcCcEEEEEcCe
Q 038101 286 MAASTI-------AQRGIQLVATAHGVTI-ENLIMNPSLEMLIGG 322 (660)
Q Consensus 286 ~a~~~i-------~~~GvtVI~TtH~~~l-~~~i~dril~l~~G~ 322 (660)
+++..+ +..|.|||+|-|..+. +-..-|+.+.|..|+
T Consensus 964 qaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGG 1008 (1391)
T KOG0065|consen 964 QAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGG 1008 (1391)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCC
Confidence 986554 6799999999998864 334578888888776
No 403
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.42 E-value=8.5e-13 Score=142.15 Aligned_cols=157 Identities=13% Similarity=0.206 Sum_probs=116.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC---c-----
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS---E----- 232 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~---e----- 232 (660)
.++++|+.+.|...- --+..+ |++||++-|+|.|||||||+++.+.|+..|+.|. |. +|... +
T Consensus 322 ~lelrnvrfay~~~~----FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~-I~-ldg~pV~~e~ledY 395 (546)
T COG4615 322 TLELRNVRFAYQDNA----FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE-IL-LDGKPVSAEQLEDY 395 (546)
T ss_pred ceeeeeeeeccCccc----ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCc-ee-ECCccCCCCCHHHH
Confidence 478889988886531 122233 8999999999999999999999999999999885 32 33211 0
Q ss_pred ------cccC----------CCCCCC----------------CCCcc-ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 233 ------IGGN----------GDIPHP----------------GIGNA-RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 233 ------Ia~~----------~~ip~~----------------~Lg~~-rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
+..+ .+.+.+ .+.+. -..-.+|.|||+|+++-.|+.-+-+|+++||=
T Consensus 396 R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 396 RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 0000 011110 11110 11235899999999999999999999999999
Q ss_pred CCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 280 GTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 280 gsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
.+..||.-++.+ ++.|+||+++|||...- ..+|+.+.+.+|++...+
T Consensus 476 AADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 476 AADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred hccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 999999998875 78999999999997654 469999999999986643
No 404
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=9.3e-14 Score=150.49 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=112.3
Q ss_pred EEEEeEEEEECcccccccccccc--c-ccCCcEEEEEcCCCCcHHHHHHHHHh-ccccCCCCeEEEEcCCC------ccc
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQD--L-VQDGASLLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSS------EIG 234 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~d--l-I~~Ge~ilIlGPnGsGKTTLLR~Iag-lL~p~~GkrV~~Vdq~~------eIa 234 (660)
|.|.|+++.-.+. .++-+ + |-.|..++|+||||-||||||+.|+. .++.-....|.++.+.- -|.
T Consensus 265 IKiEnF~ISA~Gk-----~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~ 339 (807)
T KOG0066|consen 265 IKIENFDISAQGK-----LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAID 339 (807)
T ss_pred ceeeeeeeecccc-----eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHH
Confidence 6788888875443 34433 3 78899999999999999999999973 34322233344433321 000
Q ss_pred -------------------------c-----------------CCCC---CC-----CCCCc-----cccCCCCCHHHHH
Q 038101 235 -------------------------G-----------------NGDI---PH-----PGIGN-----ARRMQVPNSEMQH 259 (660)
Q Consensus 235 -------------------------~-----------------~~~i---p~-----~~Lg~-----~rrl~vLSgG~qq 259 (660)
+ .+.. +. .++|- .+....+|||.+.
T Consensus 340 tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRM 419 (807)
T KOG0066|consen 340 TVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRM 419 (807)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceee
Confidence 0 0000 00 02221 2566789999999
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||.+||||.+.|.+|+|||||+.||..+...+ .....|+++++||..+.+.+|+.|+.+...++.+
T Consensus 420 RvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 420 RVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 99999999999999999999999999987665 3345899999999999999999999998877654
No 405
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.40 E-value=1.1e-13 Score=135.88 Aligned_cols=135 Identities=19% Similarity=0.302 Sum_probs=100.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC------cccc----C-------CCCC-----------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS------EIGG----N-------GDIP----------- 240 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~------eIa~----~-------~~ip----------- 240 (660)
+..|+++-++|||||||||||-.++|+++.. | .|.+-..+- |++. . ..+|
T Consensus 22 v~aGe~~HliGPNGaGKSTLLA~lAGm~~~s-G-si~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~ 99 (248)
T COG4138 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSGS-G-SIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPD 99 (248)
T ss_pred cccceEEEEECCCCccHHHHHHHHhCCCCCC-c-eEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCch
Confidence 8889999999999999999999999999754 4 233222111 1110 0 0011
Q ss_pred ------------CCCCCcc--ccCCCCCHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCccHHHHHH-------HH
Q 038101 241 ------------HPGIGNA--RRMQVPNSEMQHKVLIEAVEN-------HMPQVIVIDEIGTKLEAMAAST-------IA 292 (660)
Q Consensus 241 ------------~~~Lg~~--rrl~vLSgG~qqrv~IA~aL~-------~~P~VLILDEPgsgLD~~a~~~-------i~ 292 (660)
..+++++ |.+..+|||+=|||-+|++.. -.-++|++|||.++||...... ++
T Consensus 100 ~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c 179 (248)
T COG4138 100 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179 (248)
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHH
Confidence 0133332 456789999999999998764 2347999999999999987544 37
Q ss_pred hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 293 QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 293 ~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
..|.+||++.||.+-....+|+++.+..|++..
T Consensus 180 ~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred hCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 889999999999999889999999999998754
No 406
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.39 E-value=2.1e-12 Score=129.77 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=57.2
Q ss_pred cCCCCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCccHHHHHHH-------Hhc-C-CEEEEEEcChhHHHHhcC--
Q 038101 249 RMQVPNSEMQHKVLIEAVE----NHMPQVIVIDEIGTKLEAMAASTI-------AQR-G-IQLVATAHGVTIENLIMN-- 313 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL----~~~P~VLILDEPgsgLD~~a~~~i-------~~~-G-vtVI~TtH~~~l~~~i~d-- 313 (660)
.+..+|+||||++.+++++ +.+|+++|+|||+++||+..+..+ .+. | .++|++||++......++
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~ 202 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKM 202 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCce
Confidence 4568999999998877554 579999999999999999987765 334 5 579999998876666666
Q ss_pred cEEEEEcCe
Q 038101 314 PSLEMLIGG 322 (660)
Q Consensus 314 ril~l~~G~ 322 (660)
+++++.+|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 455555554
No 407
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=1.5e-12 Score=130.38 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=80.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCC-CccccCC-CCCCCCCCc--cccCCCCCHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTS-SEIGGNG-DIPHPGIGN--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~-~eIa~~~-~ip~~~Lg~--~rrl~vLSgG~qqrv~I 263 (660)
+..|++++|+||||+||||++|.|+++.--. .| .+++.. ..+.... -+.+.+... .+....+|.|+++. ..
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G---~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~ 101 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIG---CFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSET-AY 101 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcC---CCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHH-HH
Confidence 5678999999999999999999998764211 12 112111 1111000 011111111 23455678888875 45
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHH--------HHHhcCCEEEEEEcChhHHHHhcC
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAAS--------TIAQRGIQLVATAHGVTIENLIMN 313 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~--------~i~~~GvtVI~TtH~~~l~~~i~d 313 (660)
+..++.+|+++++|||+.|+|+.... .+.+.|.++|++||+.++++.+++
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhhc
Confidence 56678899999999999999886422 235679999999999999887664
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.39 E-value=7.2e-13 Score=146.40 Aligned_cols=136 Identities=20% Similarity=0.322 Sum_probs=98.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------CeEEEEcCCCccccC---CC--CCC-------CC------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------KRVMIVDTSSEIGGN---GD--IPH-------PG------ 243 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------krV~~Vdq~~eIa~~---~~--ip~-------~~------ 243 (660)
|++|..++|+||||||||+|.|.|+|+.+-..| .++.|++|+.-+... .. +|. .+
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL 584 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDL 584 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHH
Confidence 899999999999999999999999999875433 357888887654310 00 111 01
Q ss_pred ------------------CCccc-cCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH----HHhcCCEEEE
Q 038101 244 ------------------IGNAR-RMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST----IAQRGIQLVA 300 (660)
Q Consensus 244 ------------------Lg~~r-rl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~----i~~~GvtVI~ 300 (660)
+...+ -.++||||+|||+.+||.+.|+|+..+|||-|++..+..-.. ++..|.++|.
T Consensus 585 ~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~lls 664 (728)
T KOG0064|consen 585 EAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLS 664 (728)
T ss_pred HHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEE
Confidence 11111 136799999999999999999999999999999765554333 3678999999
Q ss_pred EEcChhHHHHhcCcEEEE-EcCeEEE
Q 038101 301 TAHGVTIENLIMNPSLEM-LIGGVQN 325 (660)
Q Consensus 301 TtH~~~l~~~i~dril~l-~~G~I~~ 325 (660)
+||..++- .+.+..+.. -.|+++.
T Consensus 665 ithrpslw-k~h~~ll~~dg~g~~q~ 689 (728)
T KOG0064|consen 665 ITHRPSLW-KYHTHLLEFDGEGGWQF 689 (728)
T ss_pred eecCccHH-HHHHHHHhccCCCCeee
Confidence 99998864 344444433 2355554
No 409
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.35 E-value=5.4e-12 Score=133.34 Aligned_cols=220 Identities=17% Similarity=0.206 Sum_probs=130.4
Q ss_pred cceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCCC----ccceeecc---ceeeccccCceEEEE--
Q 038101 98 YELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAVD----NRAGISRT---LHRISAIRNRKGAII-- 168 (660)
Q Consensus 98 ~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~d----~R~GI~rt---lhRIs~irn~~LeI~-- 168 (660)
.++.||.+.-+..+.+...++.........|.+++...+..+..+++. .++-+..+ .+||..+..+...-.
T Consensus 5 ~~v~eI~in~~~~v~v~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~p~~~~~l~~g~Rv~~~~~p~~~~~~~ 84 (308)
T TIGR02788 5 EDVTEICINRPGEVWVEGPGGWQRFDVPDLTFSHLMRLARAIASFSKQSISEENPILSATLPGGERVQIVIPPACENDTV 84 (308)
T ss_pred CCcEEEEEcCCCEEEEEECCcEEEecCccCCHHHHHHHHHHHHHHhCCcccCCCceEEEECCCCeEEEEECCCcccCCCc
Confidence 457888888777666665543333333468999999998888765421 22233322 378876554321111
Q ss_pred eEEEEECcccc---------ccc---------------c------------cccccccCCcEEEEEcCCCCcHHHHHHHH
Q 038101 169 GLTCRVGRAVS---------GSA---------------N------------LLQDLVQDGASLLFIGPPGVGKTTIIREI 212 (660)
Q Consensus 169 ~Lt~rygr~v~---------G~a---------------~------------iL~dlI~~Ge~ilIlGPnGsGKTTLLR~I 212 (660)
.+++|.-.... |.. . .|+-.+..|++++|+||+|||||||+++|
T Consensus 85 ~i~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~v~~~~~ili~G~tGsGKTTll~al 164 (308)
T TIGR02788 85 SITIRKPSLVDFSLDDYEEKGFFDTVRAQSGTLSDNDEQLLELLDAGDIKEFLRLAIASRKNIIISGGTGSGKTTFLKSL 164 (308)
T ss_pred eEEEECCCCCCCCHHHHHHcCCcccccccccccchhhHHHHHhhhhHHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHH
Confidence 34444322110 000 0 01112668999999999999999999999
Q ss_pred HhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc-ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH
Q 038101 213 ARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA-RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI 291 (660)
Q Consensus 213 aglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~-rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i 291 (660)
++.+.+. .++..+.+..|+.... + ..+... ..-..-.......-.++.++.++|++|++|||.+. +..+.-..
T Consensus 165 ~~~~~~~--~~iv~ied~~El~~~~--~-~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~-e~~~~l~a 238 (308)
T TIGR02788 165 VDEIPKD--ERIITIEDTREIFLPH--P-NYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILGELRGD-EAFDFIRA 238 (308)
T ss_pred HccCCcc--ccEEEEcCccccCCCC--C-CEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEeccCCH-HHHHHHHH
Confidence 9999765 3466777666653221 0 000000 00000011122334677788999999999999974 33333333
Q ss_pred HhcCC-EEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 292 AQRGI-QLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 292 ~~~Gv-tVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
...|. .++.|+|+.+.... .+++..+..|++.
T Consensus 239 ~~~g~~~~i~T~Ha~~~~~~-~~Rl~~l~~~~~~ 271 (308)
T TIGR02788 239 VNTGHPGSITTLHAGSPEEA-FEQLALMVKSSQA 271 (308)
T ss_pred HhcCCCeEEEEEeCCCHHHH-HHHHHHHhhcccc
Confidence 45776 46999999996554 7888777666653
No 410
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.1e-11 Score=128.82 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 252 VPNSEMQHKVLIEAVENH----MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~~----~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
.+|+||+||+++|++++. +|+++|+|||+++||+.....+ ...+.++|++||+.... .+||+++.+..+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEEe
Confidence 489999999999986554 9999999999999999987775 23578999999999865 689999988876
Q ss_pred e
Q 038101 322 G 322 (660)
Q Consensus 322 ~ 322 (660)
+
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.31 E-value=5.1e-12 Score=123.83 Aligned_cols=110 Identities=17% Similarity=0.264 Sum_probs=68.5
Q ss_pred EEEEcCCCCcHHHHHHHHHh-ccccCCC-------CeEEEEcCCCccccCCCCCCCCCCc--cccCCCCCHHHHHHHHHH
Q 038101 195 LLFIGPPGVGKTTIIREIAR-VLANDYK-------KRVMIVDTSSEIGGNGDIPHPGIGN--ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 195 ilIlGPnGsGKTTLLR~Iag-lL~p~~G-------krV~~Vdq~~eIa~~~~ip~~~Lg~--~rrl~vLSgG~qqrv~IA 264 (660)
++|+||||+||||+||.|+- .+-...| -++.++++-. .+.+... ......+|+++++...+.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il--------~~~~~~d~~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIF--------TRIGASDSLAQGLSTFMVEMKETANIL 73 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEE--------EEeCCCCchhccccHHHHHHHHHHHHH
Confidence 68999999999999999982 2211122 2223222211 1111111 124456777777633332
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH--------Hh-cCCEEEEEEcChhHHHHhcCc
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI--------AQ-RGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~-~GvtVI~TtH~~~l~~~i~dr 314 (660)
..+.+|+++|+|||++++|+.....+ .+ .|.++|++||..++. .+++.
T Consensus 74 -~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~-~~~~~ 130 (185)
T smart00534 74 -KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT-KLADE 130 (185)
T ss_pred -HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH-HHhhc
Confidence 23349999999999999999854332 34 489999999999754 45654
No 412
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=2.7e-11 Score=121.89 Aligned_cols=113 Identities=16% Similarity=0.224 Sum_probs=73.9
Q ss_pred ccCC--cEEEEEcCCCCcHHHHHHHHHh--ccccCCC-------CeEEEEcCCCccccCCCCCCCCCCcccc-CCCCC--
Q 038101 189 VQDG--ASLLFIGPPGVGKTTIIREIAR--VLANDYK-------KRVMIVDTSSEIGGNGDIPHPGIGNARR-MQVPN-- 254 (660)
Q Consensus 189 I~~G--e~ilIlGPnGsGKTTLLR~Iag--lL~p~~G-------krV~~Vdq~~eIa~~~~ip~~~Lg~~rr-l~vLS-- 254 (660)
+..+ ..++|+||||+|||||||.|+. .++. .| -+++++++-.. .++.... ...+|
T Consensus 24 l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~-~G~~v~a~~~~~~~~d~i~~----------~l~~~~si~~~~S~f 92 (213)
T cd03281 24 IGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAH-IGSFVPADSATIGLVDKIFT----------RMSSRESVSSGQSAF 92 (213)
T ss_pred ecCCCceEEEEECCCCCChHHHHHHHHHHHHHHh-CCCeeEcCCcEEeeeeeeee----------eeCCccChhhccchH
Confidence 4444 6899999999999999999983 3322 22 23444443211 1111101 11223
Q ss_pred HHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHH--------HHHHhc---CCEEEEEEcChhHHHHhc
Q 038101 255 SEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAA--------STIAQR---GIQLVATAHGVTIENLIM 312 (660)
Q Consensus 255 gG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~--------~~i~~~---GvtVI~TtH~~~l~~~i~ 312 (660)
..+-+++.++++++.+|.++|+|||++++|+... +.+.+. +.++|++||+.+++....
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 2345788888999999999999999999998532 122343 358999999999887653
No 413
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.24 E-value=2.5e-11 Score=131.63 Aligned_cols=137 Identities=26% Similarity=0.475 Sum_probs=100.7
Q ss_pred ccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--------CCCCeEEEEcCCC-----------ccccC-----
Q 038101 184 LLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN--------DYKKRVMIVDTSS-----------EIGGN----- 236 (660)
Q Consensus 184 iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--------~~GkrV~~Vdq~~-----------eIa~~----- 236 (660)
+++|+ +++|+.++|+|++|+||||+||+|+|.... +.|+ |- ++.+. ++.+.
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~-v~-vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-VE-VPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCc-ee-ccccchhhccCcccccccCchhHHHH
Confidence 45555 899999999999999999999999997643 3332 21 22111 11100
Q ss_pred -----CC-------CCCCCCCcc----ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------H
Q 038101 237 -----GD-------IPHPGIGNA----RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------A 292 (660)
Q Consensus 237 -----~~-------ip~~~Lg~~----rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~ 292 (660)
++ +...++.++ ++...||.|||.|..||.++...|.++++||-.+.||...+..+ +
T Consensus 476 l~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR 555 (593)
T COG2401 476 LRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555 (593)
T ss_pred HhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 11 111233332 45678999999999999999999999999999999999987665 4
Q ss_pred hcCCEEEEEEcChhHHHHh-cCcEEEEEcCe
Q 038101 293 QRGIQLVATAHGVTIENLI-MNPSLEMLIGG 322 (660)
Q Consensus 293 ~~GvtVI~TtH~~~l~~~i-~dril~l~~G~ 322 (660)
+.|.|++++||..++.+.+ -|.++...-|.
T Consensus 556 e~giTlivvThrpEv~~AL~PD~li~vgYg~ 586 (593)
T COG2401 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGK 586 (593)
T ss_pred HhCCeEEEEecCHHHHhccCCceeEEeeccc
Confidence 6799999999999999988 55565554444
No 414
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.21 E-value=1.7e-10 Score=127.49 Aligned_cols=160 Identities=12% Similarity=0.155 Sum_probs=123.2
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
...+++++|+..-.+. ...++++ +..||+++|.|-.|-|-+.|+-+|+|+..+..|+
T Consensus 255 ~~vL~V~~L~v~~~~~----~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 255 EVVLEVEDLSVKDRRG----VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred CeEEEEeeeEeecCCC----CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 3458899999876543 3677777 8999999999999999999999999998665442
Q ss_pred ----eEEEEcCCCccccCCCCCC--------------------------------------CCCC---ccccCCCCCHHH
Q 038101 223 ----RVMIVDTSSEIGGNGDIPH--------------------------------------PGIG---NARRMQVPNSEM 257 (660)
Q Consensus 223 ----rV~~Vdq~~eIa~~~~ip~--------------------------------------~~Lg---~~rrl~vLSgG~ 257 (660)
.++||++...- .+.++. +++. ...+...||||.
T Consensus 331 ~r~~G~~~VPedR~~--~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 331 RRRLGLAYVPEDRHG--HGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHhcCCccCChhhcc--CccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 12233322100 000000 0110 012356799999
Q ss_pred HHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 258 QHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 258 qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+.+||=+..+|++||+.+||.|||..+.+.+ ++.|..|++++-+++++..+||++.+|..|++....
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 9999999999999999999999999999997765 578999999999999999999999999999987644
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.21 E-value=5e-11 Score=120.19 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=73.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC-CCccccC-CCCCCCCCCccccCCCCCHHHHHHHHHHHHH--c
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT-SSEIGGN-GDIPHPGIGNARRMQVPNSEMQHKVLIEAVE--N 268 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq-~~eIa~~-~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL--~ 268 (660)
++++|+||||+||||+||.|++..-.. ..-.+++. ...++.. ..+++.+.... -....|.-+.....++.++ +
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~--~~g~~vp~~~~~i~~~~~i~~~~~~~~~-ls~g~s~f~~e~~~l~~~l~~~ 107 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLA--QIGSFVPASKAEIGVVDRIFTRIGASDD-LAGGRSTFMVEMVETANILNNA 107 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHh--ccCCeeccccceecceeeEeccCCchhh-hccCcchHHHHHHHHHHHHHhC
Confidence 899999999999999999998643211 11112221 1111111 11222222110 0011232233333454444 5
Q ss_pred cCCcEEEEeCC---CCCccHHHH-----HHHHhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 269 HMPQVIVIDEI---GTKLEAMAA-----STIAQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 269 ~~P~VLILDEP---gsgLD~~a~-----~~i~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
.+|.++|+||| |+++|..+. +.+.+. +.++|++||+.++. .+++.+..+..+.+.
T Consensus 108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~-~l~~~~~~v~~~~~~ 171 (216)
T cd03284 108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELT-ELEGKLPRVKNFHVA 171 (216)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHH-HHhhcCCCeEEEEEE
Confidence 79999999999 788887653 223455 89999999997654 467766555555543
No 416
>PRK13764 ATPase; Provisional
Probab=99.19 E-value=4.6e-10 Score=128.34 Aligned_cols=212 Identities=19% Similarity=0.273 Sum_probs=133.6
Q ss_pred hhhhCCCccEEecCC-CCcc---cccCcCCHHHHHHHHhhhcCCCCC--------ccce--ee-ccceeeccccCceEEE
Q 038101 103 VVMDLGRKPLARFPS-GDFS---LSDCQITVHHIEHATSQVGDFAVD--------NRAG--IS-RTLHRISAIRNRKGAI 167 (660)
Q Consensus 103 I~Ld~gR~~~arf~~-~~~~---l~~~~vt~eDl~~~~~~lg~fs~d--------~R~G--I~-rtlhRIs~irn~~LeI 167 (660)
|-|..|.||.++... ++|. +++.++|.+++...+..+-.+..- ...+ +. -..+|+...+.+..
T Consensus 147 vhL~~g~pp~~r~~~~G~~~l~~i~~~~lt~~~l~~la~~i~~~~~~~~~~~~e~~~p~~~~~~~~~~Rv~i~~~p~~-- 224 (602)
T PRK13764 147 VHLKEGVPPMAKKGKPGEWKLVKIRDEPLTEEELEEIAREILERAKRDPDGFIEIERRGATVVQLGNYRIVIARPPFS-- 224 (602)
T ss_pred EEEcCCCCcEEEEecCCceEEEECCCCCCCHHHHHHHHHHHHHHhcccccccceeecCcccccCCCCEEEEEEccCcc--
Confidence 445579999998863 4333 455689999998888877433211 0011 10 11367666544331
Q ss_pred EeEEEEECcc--cc-----cccc-cccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCC
Q 038101 168 IGLTCRVGRA--VS-----GSAN-LLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDI 239 (660)
Q Consensus 168 ~~Lt~rygr~--v~-----G~a~-iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~i 239 (660)
.+++++.-+. .. +... ++..+...+.+++|.||+||||||++++|+..+.. .++.|..+.+..|+.....+
T Consensus 225 ~~~~itirrp~~~~~Le~l~l~~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~~-~~riV~TiEDp~El~~~~~i 303 (602)
T PRK13764 225 DGIEITAVRPVVKLSLEDYNLSEKLKERLEERAEGILIAGAPGAGKSTFAQALAEFYAD-MGKIVKTMESPRDLQVPPEI 303 (602)
T ss_pred ccEEEEEEccCCCCCHHHhCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHhh-CCCEEEEECCCccccCCCcc
Confidence 1333322111 00 0011 11222566788999999999999999999998864 46677788877776321111
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEc---------------C
Q 038101 240 PHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAH---------------G 304 (660)
Q Consensus 240 p~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH---------------~ 304 (660)
.+ ...+.+.+. .....+|.++||+|++||+....+..+...+...|..++.|.| +
T Consensus 304 ~q--------~~~~~~~~~--~~~~~lLR~rPD~IivGEiRd~Et~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~ 373 (602)
T PRK13764 304 TQ--------YSKLEGSME--ETADILLLVRPDYTIYDEMRKTEDFKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVE 373 (602)
T ss_pred eE--------EeeccccHH--HHHHHHHhhCCCEEEECCCCCHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhh
Confidence 11 111111221 2223347889999999999988887777777778999999999 5
Q ss_pred hhHHHHhcCcEEEEEcCeEEEEe
Q 038101 305 VTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 305 ~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+..+..++|.++.+..|++..+.
T Consensus 374 lg~i~~iID~IV~I~~G~I~~v~ 396 (602)
T PRK13764 374 LGMIPQIVDTVIFIEDGEVSKVY 396 (602)
T ss_pred hchHHHhhcEEEEEeCCEEEEEE
Confidence 66666789999999999986554
No 417
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=99.17 E-value=4.7e-10 Score=120.41 Aligned_cols=205 Identities=17% Similarity=0.248 Sum_probs=117.3
Q ss_pred eehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCC------CCcccee----ecc-ceeeccccCceEEEEe
Q 038101 101 IEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFA------VDNRAGI----SRT-LHRISAIRNRKGAIIG 169 (660)
Q Consensus 101 ~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs------~d~R~GI----~rt-lhRIs~irn~~LeI~~ 169 (660)
.+|-+..+.++.+|..+.-..+...+++.+++...+..+..+. .+.+..+ .+. -.|++.+.... -..
T Consensus 15 SDIhi~~~~~v~~R~~G~l~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~r~R~~~~~~~~--g~~ 92 (343)
T TIGR01420 15 SDIHLTAGSPPAMRIDGDLVRIEFEPLTPEDTQKLLREILSEKQREEFEENGELDFSYSLPGVSRFRVNAFKQRG--GVA 92 (343)
T ss_pred cEEEEECCCeEEEEECCEEEEcCCCCCCHHHHHHHHHHHhHHHHHhhhcccCcEEEEEEcCCCcEEEEEEeecCC--CeE
Confidence 3455556777777776554445555788888877777654322 1111111 110 12333332111 012
Q ss_pred EEEEECcc-c-----cccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCC---C
Q 038101 170 LTCRVGRA-V-----SGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGD---I 239 (660)
Q Consensus 170 Lt~rygr~-v-----~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~---i 239 (660)
+.+|.-.. . .|....+..+ ...+++++|.||+||||||+|+.|.+.+....+.+|..+.+..|+..... +
T Consensus 93 ~viR~~~~~~~~l~~lg~~~~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i 172 (343)
T TIGR01420 93 LVLRLIPSKIPTFEELGLPPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLI 172 (343)
T ss_pred EEEEcCCCCCCCHHHcCCCHHHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceE
Confidence 22222111 0 0111222233 35678999999999999999999999776444567888877666531110 1
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEE
Q 038101 240 PHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSL 316 (660)
Q Consensus 240 p~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~i~dril 316 (660)
.+..++ .- ..-..-+++.++.++|++|++||+........+-..+..|..|+.|.|..+.... .++++
T Consensus 173 ~q~evg------~~--~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~-~~Rl~ 240 (343)
T TIGR01420 173 NQREVG------LD--TLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQT-IERII 240 (343)
T ss_pred EccccC------CC--CcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHH-HHHHH
Confidence 111111 10 1112345788899999999999998544444444457889999999999887654 45553
No 418
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.17 E-value=1.8e-10 Score=114.35 Aligned_cols=117 Identities=18% Similarity=0.323 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCC---CCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGD---IPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~---ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
..++|.||+||||||+++.|++.+.+..+.+|..+.+..++..... +.+..++. +. .--.-.++.++.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~----~~----~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGL----DT----LSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCC----Cc----cCHHHHHHHHhcC
Confidence 4789999999999999999999887554556777766555421110 11111111 01 1122467889999
Q ss_pred CCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+|++|++||+...........++..|..+++|+|+.+... ..++++.+
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~~-~~~Rl~~l 121 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAAK-TIDRIIDV 121 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHHH-HHhHHHhh
Confidence 9999999999865555555556789999999999998765 46776544
No 419
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=3.2e-10 Score=117.53 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhc---Cc
Q 038101 251 QVPNSEMQHKVLIEAVEN---------HMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIM---NP 314 (660)
Q Consensus 251 ~vLSgG~qqrv~IA~aL~---------~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~---dr 314 (660)
..+|.|||++++++++++ .+|+++++|||+++||+..+..+ .+.+ ++++++|+......+| ..
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~~ 260 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRAQ 260 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCcc
Confidence 447999999999999875 79999999999999999998776 2344 6777777776666666 56
Q ss_pred EEEEEcCeE
Q 038101 315 SLEMLIGGV 323 (660)
Q Consensus 315 il~l~~G~I 323 (660)
++.+..|++
T Consensus 261 i~~l~~g~i 269 (270)
T cd03242 261 IFRVDAGTL 269 (270)
T ss_pred EEEEeCcEE
Confidence 777777764
No 420
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.13 E-value=3.1e-10 Score=133.64 Aligned_cols=121 Identities=21% Similarity=0.322 Sum_probs=82.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc-ccCCCCeEEEEcCC--CccccCCCCCCCCCCc----cccCCCCCHHHHHHHHHH
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL-ANDYKKRVMIVDTS--SEIGGNGDIPHPGIGN----ARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL-~p~~GkrV~~Vdq~--~eIa~~~~ip~~~Lg~----~rrl~vLSgG~qqrv~IA 264 (660)
+.+++|.|||++||||+||.++... -...| .+|+.. ..++....+ ...++. ...+..+|++|++++.|+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G---~~vpa~~~~~i~~~~~i-~~~ig~~~si~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSG---LPIPANEPSEIPVFKEI-FADIGDEQSIEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhC---CCcccCCCccccccceE-EEecCCccchhhchhHHHHHHHHHHHHH
Confidence 4689999999999999999996441 11112 133332 122111100 001221 134567899999999998
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+++ .+|.++|+|||++|+|+.....+ .+.|.++|++||+.++....++...+
T Consensus 403 ~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 403 EKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred HhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 877 78999999999999998754332 46799999999999988777665433
No 421
>PRK13695 putative NTPase; Provisional
Probab=99.10 E-value=3.7e-10 Score=109.06 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=88.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeE-EEEcCCCc-----ccc---------CCCCCCCCC-Cc---cccCCCCC
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRV-MIVDTSSE-----IGG---------NGDIPHPGI-GN---ARRMQVPN 254 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV-~~Vdq~~e-----Ia~---------~~~ip~~~L-g~---~rrl~vLS 254 (660)
.++|+|+||||||||++.|++.+.. .|..+ +++.+... .+. ...+.+.+. .. .+....+|
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ls 80 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLE 80 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehH
Confidence 5799999999999999999887764 34443 34433110 000 000111111 11 12334578
Q ss_pred HHHHHHHHHHHHHccCCcEEEEeCCCC--CccHHHHHH---HHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEec
Q 038101 255 SEMQHKVLIEAVENHMPQVIVIDEIGT--KLEAMAAST---IAQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTL 328 (660)
Q Consensus 255 gG~qqrv~IA~aL~~~P~VLILDEPgs--gLD~~a~~~---i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~l 328 (660)
++++....+......+|++|++|||+. .+|....+. +.+.|.++|+++|+.. ...+++++..+.+|++..++.
T Consensus 81 gle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~-~~~~~~~i~~~~~~~i~~~~~ 158 (174)
T PRK13695 81 DLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS-VHPFVQEIKSRPGGRVYELTP 158 (174)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh-hHHHHHHHhccCCcEEEEEcc
Confidence 888888887777778999999999653 555444333 3578999999999854 446789999999999887753
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.09 E-value=1.4e-10 Score=136.19 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=79.8
Q ss_pred ccCC-cEEEEEcCCCCcHHHHHHHHHhc-cccCCCCeEEEEcCCC--ccccCCCCCCCCCCc----cccCCCCCHHHHHH
Q 038101 189 VQDG-ASLLFIGPPGVGKTTIIREIARV-LANDYKKRVMIVDTSS--EIGGNGDIPHPGIGN----ARRMQVPNSEMQHK 260 (660)
Q Consensus 189 I~~G-e~ilIlGPnGsGKTTLLR~Iagl-L~p~~GkrV~~Vdq~~--eIa~~~~ip~~~Lg~----~rrl~vLSgG~qqr 260 (660)
+..+ +.++|+||||+|||||||.|++. +-+..|- +++... .++....+. ..++. ...+..+|++|++.
T Consensus 318 l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---~Vpa~~~~~~~~~d~i~-~~i~~~~si~~~LStfS~~m~~~ 393 (771)
T TIGR01069 318 LKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---PIPANEHSEIPYFEEIF-ADIGDEQSIEQNLSTFSGHMKNI 393 (771)
T ss_pred eCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---CccCCccccccchhhee-eecChHhHHhhhhhHHHHHHHHH
Confidence 5555 89999999999999999999988 3332231 222221 121111000 01111 13456789999998
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHH
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~ 309 (660)
..|.... ..|.++|+|||++|+|+.....+ .+.|.++|+|||+.++..
T Consensus 394 ~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 394 SAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 8877655 68999999999999999875543 457999999999988754
No 423
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=99.08 E-value=3.6e-10 Score=110.81 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=81.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCc-c--ccCCCCCHHHHH
Q 038101 183 NLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGN-A--RRMQVPNSEMQH 259 (660)
Q Consensus 183 ~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~-~--rrl~vLSgG~qq 259 (660)
..|+..+..|++++|+||||||||||+++|++++.++. ++..+....++.. ++...-. . ......++....
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~--~~i~ied~~E~~~----~~~~~~~~~~~~~~~~~~~~~~~ 89 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE--RIITIEDTAELQL----PHPNWVRLVTRPGNVEGSGEVTM 89 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC--CEEEECCccccCC----CCCCEEEEEEecCCCCCCCccCH
Confidence 34455588999999999999999999999999998753 3555655555422 1111000 0 000111222333
Q ss_pred HHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCE-EEEEEcChhHHHHh
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQ-LVATAHGVTIENLI 311 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gvt-VI~TtH~~~l~~~i 311 (660)
.-.+..++.++|++++++|+.... +.+.-+.++.|.. ++.|.|..+....+
T Consensus 90 ~~~l~~~lR~~pd~i~igEir~~e-a~~~~~a~~tGh~g~~~T~Ha~s~~~~~ 141 (186)
T cd01130 90 ADLLRSALRMRPDRIIVGEVRGGE-ALDLLQAMNTGHPGGMTTIHANSAEEAL 141 (186)
T ss_pred HHHHHHHhccCCCEEEEEccCcHH-HHHHHHHHhcCCCCceeeecCCCHHHHH
Confidence 456667888999999999998753 3444445788998 99999998866543
No 424
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=99.08 E-value=1.6e-09 Score=117.93 Aligned_cols=206 Identities=19% Similarity=0.182 Sum_probs=125.9
Q ss_pred cceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCC------CCCcccee--------------e-ccc--
Q 038101 98 YELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDF------AVDNRAGI--------------S-RTL-- 154 (660)
Q Consensus 98 ~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~f------s~d~R~GI--------------~-rtl-- 154 (660)
....||.+..|+++.++..++-..++...++.+++..++..+-.. ..+++.+. + +..
T Consensus 22 ~~~SDI~l~~g~~v~ir~~G~l~~~~~~~l~~~~~~~~i~~i~~~~~~~~l~~~~~vd~a~~~~~~~~g~~~l~~g~~~r 101 (372)
T TIGR02525 22 HEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDRAIQLRGDENGRYGLGRGERVR 101 (372)
T ss_pred CCCceEEEcCCCCeEEEECCeEEECCCCCCCHHHHHHHHHHHhHHHHHHHHhccCCcccceecccccccceeccCCceEE
Confidence 457789999999999988776566666678999998888776322 12222222 1 001
Q ss_pred eeeccccCc---eEEEEeEEEEECcc-c-----cccc-ccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCe
Q 038101 155 HRISAIRNR---KGAIIGLTCRVGRA-V-----SGSA-NLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLAND-YKKR 223 (660)
Q Consensus 155 hRIs~irn~---~LeI~~Lt~rygr~-v-----~G~a-~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~Gkr 223 (660)
.|+...... .-.-..+++|.-.. + .|.. .+++.++..+..++|.||+||||||+|++|++.+... .+.+
T Consensus 102 fR~n~~~~~~~~~~~~~~i~iR~~~~~~~~l~~lgl~~~~~~~l~~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~ 181 (372)
T TIGR02525 102 FRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTLAASIYQHCGETYPDRK 181 (372)
T ss_pred EEEEEecccccccCCCceEEEEeCCCcCCCHHHcCCCHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 122211100 00012334443211 1 0111 1222235566789999999999999999999887532 2457
Q ss_pred EEEEcCCCccccCC--CC---CCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEE
Q 038101 224 VMIVDTSSEIGGNG--DI---PHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQL 298 (660)
Q Consensus 224 V~~Vdq~~eIa~~~--~i---p~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtV 298 (660)
|..+.+..|+...+ .+ .+..++. +..+ -.-++..++-++||+|+++|.....+..++..+++.|..+
T Consensus 182 IvtiEdp~E~~~~~~~~~~~~~q~evg~----~~~~----~~~~l~~aLR~~PD~I~vGEiRd~et~~~al~aa~TGH~v 253 (372)
T TIGR02525 182 IVTYEDPIEYILGSPDDLLPPAQSQIGR----DVDS----FANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFC 253 (372)
T ss_pred EEEEecCchhccCCCceeecccccccCC----CccC----HHHHHHHhhccCCCEEeeCCCCCHHHHHHHHHHHhcCCcE
Confidence 88888777753211 00 1111111 1111 2345677888999999999999876666667788999999
Q ss_pred EEEEcChhHHHHh
Q 038101 299 VATAHGVTIENLI 311 (660)
Q Consensus 299 I~TtH~~~l~~~i 311 (660)
+.|.|..+....+
T Consensus 254 ~tTlHa~s~~~ai 266 (372)
T TIGR02525 254 LGTLHVKSPGEAI 266 (372)
T ss_pred EEeeCCCCHHHHH
Confidence 9999998866543
No 425
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.99 E-value=6.4e-10 Score=106.88 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc----cC--CCCCC-----CCCCc--cccCCCCCHHHHH-
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIG----GN--GDIPH-----PGIGN--ARRMQVPNSEMQH- 259 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa----~~--~~ip~-----~~Lg~--~rrl~vLSgG~qq- 259 (660)
+++|.||||+|||||...++-... ..|.++.|+....... .+ .+++. .+.-. ......+|+++++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 478999999999999887654332 2467788886532110 00 01110 01000 1233456788777
Q ss_pred -----HHHHHHHHccCCcEEEEeCCCCCcc---HHHHHH-------HHhcCCEEEEEEcChhH---------HHHhcCcE
Q 038101 260 -----KVLIEAVENHMPQVIVIDEIGTKLE---AMAAST-------IAQRGIQLVATAHGVTI---------ENLIMNPS 315 (660)
Q Consensus 260 -----rv~IA~aL~~~P~VLILDEPgsgLD---~~a~~~-------i~~~GvtVI~TtH~~~l---------~~~i~dri 315 (660)
......+...+|+++|+|||+..+| ...... +++.|+++|+++|.... +..+||.+
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~i 159 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGV 159 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEE
Confidence 5666666778999999999999888 433322 35679999999998764 34455555
Q ss_pred EEEE
Q 038101 316 LEML 319 (660)
Q Consensus 316 l~l~ 319 (660)
+.+.
T Consensus 160 i~l~ 163 (187)
T cd01124 160 IRLR 163 (187)
T ss_pred EEEE
Confidence 5443
No 426
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=98.99 E-value=6e-09 Score=110.28 Aligned_cols=205 Identities=18% Similarity=0.230 Sum_probs=123.8
Q ss_pred ccceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCCC----ccceeecc----ceeeccccCceEEEE
Q 038101 97 LYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAVD----NRAGISRT----LHRISAIRNRKGAII 168 (660)
Q Consensus 97 ~~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~d----~R~GI~rt----lhRIs~irn~~LeI~ 168 (660)
...+.||.+.-...+.+...++.+.... .++.+++...++.+..+++. ..+-++.. .+|+.+...+...=.
T Consensus 16 d~~v~eI~in~~~~v~v~~~g~~~~~~~-~~s~~~~~~l~~~la~~~g~~~~~~~P~~~~~lp~~g~R~~~~~~p~~~g~ 94 (299)
T TIGR02782 16 DPGVVEIMLNPDGRLWVERLGSGMSPLG-EMSPADAQRIIGLVADYLGTEVDRDKPIVEGELPLDGSRFEGLIPPVVAAP 94 (299)
T ss_pred CCCceEEEEcCCCeEEEEECCceEEecC-CCCHHHHHHHHHHHHHHhCCeecCCCCEEEEEECCCCEEEEEEecCccCCc
Confidence 3568888887765555544443333322 37899999888887766532 22333322 357775433221112
Q ss_pred eEEEEECcccc---------c-----ccccccccccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCCCeEEEEcCCCcc
Q 038101 169 GLTCRVGRAVS---------G-----SANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLAN-DYKKRVMIVDTSSEI 233 (660)
Q Consensus 169 ~Lt~rygr~v~---------G-----~a~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~GkrV~~Vdq~~eI 233 (660)
.+++|.-.... | ....|...+..+.+++|.|++||||||+++.|++.+.. ..+.++..+.+..|+
T Consensus 95 ~i~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 95 SFAIRKKAVAVFTLDDYVEAGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred EEEEECcCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 34444322111 0 01122333667789999999999999999999999864 235688888888786
Q ss_pred ccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCE-EEEEEcChhHHHH
Q 038101 234 GGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQ-LVATAHGVTIENL 310 (660)
Q Consensus 234 a~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gvt-VI~TtH~~~l~~~ 310 (660)
.. ++.+.-.. ....-.+. ..-++..+|-++||.|+++|+-.. ++...-..++.|.. ++.|.|..+..+.
T Consensus 175 ~~----~~~~~v~~-~~~~~~~~--~~~~l~~aLR~~pD~iivGEiR~~-ea~~~l~a~~tGh~G~~tTiHa~~~~~a 244 (299)
T TIGR02782 175 QC----AAPNVVQL-RTSDDAIS--MTRLLKATLRLRPDRIIVGEVRGG-EALDLLKAWNTGHPGGIATIHANNAKAA 244 (299)
T ss_pred cC----CCCCEEEE-EecCCCCC--HHHHHHHHhcCCCCEEEEeccCCH-HHHHHHHHHHcCCCCeEEeeccCCHHHH
Confidence 42 11111000 00000112 234677889999999999999975 34444455788986 8999999876554
No 427
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.97 E-value=8.8e-10 Score=120.11 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCC--cccc------------CCCCCC--------CCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSS--EIGG------------NGDIPH--------PGI 244 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~--eIa~------------~~~ip~--------~~L 244 (660)
.+++..+|.||.||||+++++||.+.|+.+. .|.|-++.- ...+ .+.-|+ +.+
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i 446 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI 446 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH
Confidence 3789999999999999999999999988653 455544421 1100 000000 111
Q ss_pred Cc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCc
Q 038101 245 GN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 245 g~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dr 314 (660)
.. ...++.+|||++||++++..+-...++.++|||..-||.+.+..+ ...++|-.++-|+.-++.-++|+
T Consensus 447 e~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladr 526 (592)
T KOG0063|consen 447 ENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADR 526 (592)
T ss_pred HHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcce
Confidence 11 135678999999999999999999999999999999999876553 46788999999999999999999
Q ss_pred EEEEE
Q 038101 315 SLEML 319 (660)
Q Consensus 315 il~l~ 319 (660)
++...
T Consensus 527 vivf~ 531 (592)
T KOG0063|consen 527 VIVFE 531 (592)
T ss_pred eEEEe
Confidence 97764
No 428
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=98.96 E-value=7e-09 Score=111.35 Aligned_cols=208 Identities=18% Similarity=0.174 Sum_probs=123.4
Q ss_pred ccceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCCC----ccceeecc---ceeeccccCceEEE--
Q 038101 97 LYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAVD----NRAGISRT---LHRISAIRNRKGAI-- 167 (660)
Q Consensus 97 ~~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~d----~R~GI~rt---lhRIs~irn~~LeI-- 167 (660)
...+.||.+.-...+.+...+.-........+.+++...+..+..+.+. ..+-+..+ .+|+..+..+...-
T Consensus 21 d~~vtEI~iN~~~~v~v~~~G~~~~~~~~~~~~~~~~~l~~~ia~~~~~~i~~~~P~l~~~Lp~G~Rv~~~~~p~~~~~~ 100 (332)
T PRK13900 21 EDGVNEISINKPGEVWVEKKGDIRCEQIPELDLSHLKALGRLVAQATEQKISEEKPLLSATLPNGYRIQIVFPPACEIGQ 100 (332)
T ss_pred CCCCEEEEECCCCEEEEEECCcEEEecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCeEEEEEcCCcccCCC
Confidence 3568899988877777665433222333357888888888877655421 22333322 36776654332110
Q ss_pred EeEEEEECccc---------cccc--------------------------ccccccccCCcEEEEEcCCCCcHHHHHHHH
Q 038101 168 IGLTCRVGRAV---------SGSA--------------------------NLLQDLVQDGASLLFIGPPGVGKTTIIREI 212 (660)
Q Consensus 168 ~~Lt~rygr~v---------~G~a--------------------------~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~I 212 (660)
..+++|-.... .|.. ..|...+..+.+++|.|++||||||||++|
T Consensus 101 ~~~~IRk~~~~~~sl~~l~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~~v~~~~nili~G~tgSGKTTll~aL 180 (332)
T PRK13900 101 IVYSIRKPSGMQLTLDDYEKMGAFDETATESLVDEDDVILNELLAEKKIKEFLEHAVISKKNIIISGGTSTGKTTFTNAA 180 (332)
T ss_pred ceEEEECCCCCCCCHHHHHhcCCCCcccccccccchhhhhhhhhhhHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHH
Confidence 12333322110 0100 111222567889999999999999999999
Q ss_pred HhccccCCCCeEEEEcCCCccccCCCCCCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 213 ARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 213 aglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
+..+++. .+|..+.+..|+.... +.+.-. ..+-..-+...-..-.+..++.++||+|+++|.-.. ++...-.
T Consensus 181 ~~~ip~~--~ri~tiEd~~El~l~~---~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~IivGEiR~~-ea~~~l~ 254 (332)
T PRK13900 181 LREIPAI--ERLITVEDAREIVLSN---HPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELRGA-EAFSFLR 254 (332)
T ss_pred HhhCCCC--CeEEEecCCCcccccc---CCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEEEecCCH-HHHHHHH
Confidence 9988753 6788888888874211 111000 001011111112334677889999999999999965 3444445
Q ss_pred HHhcCCE-EEEEEcChhHHHH
Q 038101 291 IAQRGIQ-LVATAHGVTIENL 310 (660)
Q Consensus 291 i~~~Gvt-VI~TtH~~~l~~~ 310 (660)
.++.|.. ++.|.|..+..+.
T Consensus 255 a~~tGh~G~~tTiHa~s~~~a 275 (332)
T PRK13900 255 AINTGHPGSISTLHADSPAMA 275 (332)
T ss_pred HHHcCCCcEEEEEecCCHHHH
Confidence 5788985 8999999876544
No 429
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.95 E-value=3.7e-09 Score=107.51 Aligned_cols=119 Identities=15% Similarity=0.257 Sum_probs=68.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHh-ccccCCCCeEEEEcC-CCccccCCCC-CCCCCCcc--ccCCCCCHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDT-SSEIGGNGDI-PHPGIGNA--RRMQVPNSEMQHKVLI 263 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iag-lL~p~~GkrV~~Vdq-~~eIa~~~~i-p~~~Lg~~--rrl~vLSgG~qqrv~I 263 (660)
+..|+.++|+||||+||||+|+.|++ .+.+..|. ++.. ...++....+ -+.+-.+. .....+...+++--.+
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~---~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS---FVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC---EEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 56789999999999999999999998 44444442 1111 1111111000 00000000 0112233344443333
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHH--------HHHHhc-CCEEEEEEcChhHHHHh
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAA--------STIAQR-GIQLVATAHGVTIENLI 311 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~--------~~i~~~-GvtVI~TtH~~~l~~~i 311 (660)
.-.+.++.++|+|||++|.|+... +.+.+. +.++|++||+.++....
T Consensus 105 -l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 105 -LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred -HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 234568999999999877664332 222455 89999999999987643
No 430
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=6.7e-09 Score=91.19 Aligned_cols=111 Identities=24% Similarity=0.397 Sum_probs=74.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+.+++|+||||+||||+++.|+..+.... ..+.+++............. ............+.+..+..++.+....|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999987542 34666655432211000000 00000122345667788888999998889
Q ss_pred cEEEEeCCCCCccHHHHHHH-------------HhcCCEEEEEEcC
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------------AQRGIQLVATAHG 304 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------------~~~GvtVI~TtH~ 304 (660)
.+|++||+..-.+....... ...+..+|+++|.
T Consensus 80 ~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 80 DVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 99999999987776654322 3457888888885
No 431
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=98.94 E-value=2.1e-08 Score=107.36 Aligned_cols=204 Identities=16% Similarity=0.191 Sum_probs=122.5
Q ss_pred ccceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCC----Cccceeecc----ceeeccccCceEEEE
Q 038101 97 LYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAV----DNRAGISRT----LHRISAIRNRKGAII 168 (660)
Q Consensus 97 ~~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~----d~R~GI~rt----lhRIs~irn~~LeI~ 168 (660)
...+.||.+.--+...+...++.+.. ...++.++++..+..+..+.+ ...+-+..+ .+|+.++..+.-.=.
T Consensus 28 D~~V~eI~iN~~~~v~v~~~g~~~~~-~~~l~~~~~~~~i~~lA~~~~~~~~~~~P~l~~~Lp~~g~Ri~~~~pp~~~~~ 106 (323)
T PRK13833 28 DATVVEIMLNPDGKLFIERLGHGVAP-AGEMSAAAAEVVIGSVAHALQSEADDERPIISGELPIGGHRFEGLLPPVVSGP 106 (323)
T ss_pred CCCcEEEEECCCCEEEEEECCceEEe-cCcCCHHHHHHHHHHHHHHhCCccCCCCceEEEEeCCCCEEEEEEcCCCCCCc
Confidence 46688998875554444333322222 235888899888888765542 233334433 368886543321112
Q ss_pred eEEEEECcccc---------c-----ccccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCCcc
Q 038101 169 GLTCRVGRAVS---------G-----SANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSSEI 233 (660)
Q Consensus 169 ~Lt~rygr~v~---------G-----~a~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~~eI 233 (660)
.+++|-..... | ....|...+..+.+++|.|++||||||||+.|++.+... .+.++..+.+..|+
T Consensus 107 ~~~IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 107 AFTIRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred eEEEECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 35555322100 0 011222336667899999999999999999999987311 24578888888886
Q ss_pred ccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCE-EEEEEcChhHHHH
Q 038101 234 GGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQ-LVATAHGVTIENL 310 (660)
Q Consensus 234 a~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gvt-VI~TtH~~~l~~~ 310 (660)
.. ++... ..+. .+.+....-++..++.++|+.|++.|+-.. ++...-..++.|.. ++.|.|..+....
T Consensus 187 ~~----~~~n~---v~l~-~~~~~~~~~lv~~aLR~~PD~IivGEiRg~-ea~~~l~a~~tGh~G~itTiHA~s~~~a 255 (323)
T PRK13833 187 QC----AAENA---VALH-TSDTVDMARLLKSTMRLRPDRIIVGEVRDG-AALTLLKAWNTGHPGGVTTIHSNTAMSA 255 (323)
T ss_pred cc----CCCCE---EEec-cCCCcCHHHHHHHHhCCCCCEEEEeecCCH-HHHHHHHHHcCCCCceEEEECCCCHHHH
Confidence 42 11111 0111 111222345667888999999999999865 34444455788885 7999999886554
No 432
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=98.93 E-value=3.5e-09 Score=108.94 Aligned_cols=204 Identities=18% Similarity=0.221 Sum_probs=120.0
Q ss_pred cceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCC----Ccc----ceeeccceeeccccCceEEEEe
Q 038101 98 YELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAV----DNR----AGISRTLHRISAIRNRKGAIIG 169 (660)
Q Consensus 98 ~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~----d~R----~GI~rtlhRIs~irn~~LeI~~ 169 (660)
.++.||.+.-+........++.........+.+++...++.+..+.+ ..+ ..+.+..+|+.....+...-..
T Consensus 11 ~~~sdI~i~~~~~v~v~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~p~~~~~~~~~~~R~~i~~~p~~~~~~ 90 (270)
T PF00437_consen 11 PEVSDIHINGPDEVWVKRIGGWVRSPVRFLSEEELERLIRRLASAAGREINERNPIQDGELPGDGIRVRITTPPVSGGPT 90 (270)
T ss_dssp TTECEEEEESTTEEEEEETTEEEEEESTTCGHHHHHHHHHHHHHHTTHHHHCCSSEEEEEECTTSEEEEEEETTTSTSEE
T ss_pred CCCEEEEEECCCeEEEEEcCcEEEEeCCCCCHHHHHHHHHHHHHHhhhhHHhhCcceeeEEeeCCeEEEEEEcCCcCCcc
Confidence 45778888877765553333323444457788888888887765542 111 1222233566544333211144
Q ss_pred EEEEECcccccccc--------------cccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc
Q 038101 170 LTCRVGRAVSGSAN--------------LLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG 235 (660)
Q Consensus 170 Lt~rygr~v~G~a~--------------iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~ 235 (660)
+++|......-..+ .|...++.+.+++|.|++||||||+|+.++..+.+. ..++..+.+..|+..
T Consensus 91 ~~iR~~~~~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 91 IVIRKFSSKPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRL 169 (270)
T ss_dssp EEEEEETSS--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--
T ss_pred cceeccccccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceee
Confidence 56653221110000 111225668999999999999999999999988775 578888888877632
Q ss_pred CCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEE-EEEEcChhHHHH
Q 038101 236 NGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQL-VATAHGVTIENL 310 (660)
Q Consensus 236 ~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtV-I~TtH~~~l~~~ 310 (660)
++.... .+..-..+.-..-.+..++-++||+|+++|+.+.....+ ...++.|..+ +.|.|..+....
T Consensus 170 ----~~~~~~---~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~-~~a~~tGh~~~~tT~Ha~s~~~~ 237 (270)
T PF00437_consen 170 ----PGPNQI---QIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA-IQAANTGHLGSLTTLHANSAEDA 237 (270)
T ss_dssp ----SCSSEE---EEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH-HHHHHTT-EEEEEEEE-SSHHHH
T ss_pred ----cccceE---EEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH-HHhhccCCceeeeeeecCCHHHH
Confidence 221110 000002222334557788999999999999998855555 6778999999 999999876554
No 433
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.91 E-value=1.6e-08 Score=109.55 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=82.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC--CCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND--YKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~--~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~a 266 (660)
..+++.++|+||+||||||+|++|++.+.+. .+++|..+.+..|+...+ +... ........+.....-..-.+..+
T Consensus 131 ~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~-~~~~-~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 131 APQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDE-IETI-SASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccc-cccc-cceeeeeeccccccCHHHHHHHH
Confidence 4578999999999999999999999998543 345677776666642111 0000 00000000100011223455668
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+-++|++|+++|+-......++-.++..|..|+.|.|..+....+ .+.+.
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i-~Rl~~ 258 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETI-RRLVG 258 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHH-HHHHH
Confidence 889999999999986666656666789999999999998876643 34433
No 434
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.91 E-value=3.3e-09 Score=126.71 Aligned_cols=78 Identities=12% Similarity=0.115 Sum_probs=69.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
.+.+..||+||+||+.||++++++| +++|||||+++||+.....+ ++.|.|||+++|+.+++. .||+++.
T Consensus 482 ~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi~ 560 (924)
T TIGR00630 482 SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVID 560 (924)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEEE
Confidence 3567899999999999999999986 89999999999999987665 467999999999999886 8999999
Q ss_pred E------EcCeEEE
Q 038101 318 M------LIGGVQN 325 (660)
Q Consensus 318 l------~~G~I~~ 325 (660)
| ..|++..
T Consensus 561 LgpgaG~~~G~Iv~ 574 (924)
T TIGR00630 561 IGPGAGIHGGEVVA 574 (924)
T ss_pred ecccccCCCCEEee
Confidence 9 7888754
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.91 E-value=8.7e-09 Score=104.93 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=74.4
Q ss_pred eEEEEeEEEEECcccccccccccccccCCcEEEEEcCCCCcHHHH-HHHHHhccccCCCCeEEEEcCCCccc-------c
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDLVQDGASLLFIGPPGVGKTTI-IREIARVLANDYKKRVMIVDTSSEIG-------G 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dlI~~Ge~ilIlGPnGsGKTTL-LR~IaglL~p~~GkrV~~Vdq~~eIa-------~ 235 (660)
.+.+.+|++.++.. +.+|++++|+|+|||||||| ++.+++.+.. |.++.|+....... .
T Consensus 7 ~~~~~~ld~~l~gg-----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 7 ELSRDELHKRLGGG-----------IPAGSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred EEEEeeeehhhCCC-----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHH
Confidence 34566777666543 78899999999999999999 6888887654 56777776432110 0
Q ss_pred CC-CCCCC-CCCc--cccC-CCCCHHHHHHHHHHHHH----ccCCcEEEEeCCCCCc----cHHHHHHH-------HhcC
Q 038101 236 NG-DIPHP-GIGN--ARRM-QVPNSEMQHKVLIEAVE----NHMPQVIVIDEIGTKL----EAMAASTI-------AQRG 295 (660)
Q Consensus 236 ~~-~ip~~-~Lg~--~rrl-~vLSgG~qqrv~IA~aL----~~~P~VLILDEPgsgL----D~~a~~~i-------~~~G 295 (660)
.+ ++... .-+. .... ..+++...++..+..++ ..+|+++++|||++.+ |+...+.+ ++.|
T Consensus 74 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g 153 (230)
T PRK08533 74 LGYDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLN 153 (230)
T ss_pred hCCchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCC
Confidence 00 00000 0000 0000 12333333333333222 3579999999999988 66544433 3568
Q ss_pred CEEEEEEc
Q 038101 296 IQLVATAH 303 (660)
Q Consensus 296 vtVI~TtH 303 (660)
.++++|+|
T Consensus 154 ~tvi~t~~ 161 (230)
T PRK08533 154 KVIILTAN 161 (230)
T ss_pred CEEEEEec
Confidence 87766654
No 436
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.89 E-value=8.3e-09 Score=94.98 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC----CCCCCCC-CCc---c-ccCCCCCHHHHHHHHHH
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN----GDIPHPG-IGN---A-RRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~----~~ip~~~-Lg~---~-rrl~vLSgG~qqrv~IA 264 (660)
+++|.|+||+||||++..+++.... .+..+.|++........ ....... ... . ............+...+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER 79 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence 3789999999999999999998876 46678888765432100 0000000 000 0 01122334455567788
Q ss_pred HHHccCCcEEEEeCCCCCccH----------HHHHHH-------HhcCCEEEEEEcChhHHH
Q 038101 265 AVENHMPQVIVIDEIGTKLEA----------MAASTI-------AQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~----------~a~~~i-------~~~GvtVI~TtH~~~l~~ 309 (660)
.+...+|++||+||++.-++. .....+ .+.|+++|+++|......
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 889999999999999954333 222222 346999999999876543
No 437
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.89 E-value=4.2e-09 Score=126.06 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=69.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
.+.+..||+||+||+.||++++++| +++||||||++||+..+..+ ++.|.|||+++|+.+++. .||+++.
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi~ 562 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIVD 562 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEE
Confidence 3678899999999999999999987 99999999999999987765 467999999999999876 6999999
Q ss_pred E------EcCeEEE
Q 038101 318 M------LIGGVQN 325 (660)
Q Consensus 318 l------~~G~I~~ 325 (660)
+ ..|++..
T Consensus 563 LgpgaG~~~G~iv~ 576 (943)
T PRK00349 563 IGPGAGVHGGEVVA 576 (943)
T ss_pred eccccCCCCCEEee
Confidence 9 8888754
No 438
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.87 E-value=1e-08 Score=106.57 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=82.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
..+.+++|.||+||||||+++.+...+.+ .+.++..+.+..|+... ++.+..+.. ..+.-..-.+..++.+
T Consensus 78 ~~~GlilisG~tGSGKTT~l~all~~i~~-~~~~iitiEdp~E~~~~-~~~q~~v~~-------~~~~~~~~~l~~~lR~ 148 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTLYSALSELNT-PEKNIITVEDPVEYQIP-GINQVQVNE-------KAGLTFARGLRAILRQ 148 (264)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHhhhCC-CCCeEEEECCCceecCC-CceEEEeCC-------cCCcCHHHHHHHHhcc
Confidence 45679999999999999999998777654 35678888888776321 111111111 1123345667888899
Q ss_pred CCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 270 MPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
+||+|+++|+.....+.+..+++..|..++.|.|..+....
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~a 189 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGA 189 (264)
T ss_pred CCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHH
Confidence 99999999999887777777788899999999999886654
No 439
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=98.86 E-value=7.7e-08 Score=102.90 Aligned_cols=205 Identities=16% Similarity=0.162 Sum_probs=120.0
Q ss_pred ccceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCCC----ccceeecc----ceeeccccCceEEEE
Q 038101 97 LYELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAVD----NRAGISRT----LHRISAIRNRKGAII 168 (660)
Q Consensus 97 ~~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~d----~R~GI~rt----lhRIs~irn~~LeI~ 168 (660)
-..+.||.+.--..+.....++ +......++.+++...+..+..+.+. ..+-++.+ ..|+.+.-.+...=-
T Consensus 32 Dp~v~EI~iN~~~~V~v~~~g~-~~~~~~~~~~~~~~~~~~~lA~~~g~~~~~~~P~l~~~lp~~G~Rv~~~~~p~~~g~ 110 (319)
T PRK13894 32 DPKTVEIMLNADGKLWQERLGE-PMRCIGTLRVAQAQAIIETIAGYHGKEVTRSKPILEGELPLDGSRFAGQLPPVVPAP 110 (319)
T ss_pred CCCceEEEEcCCCEEEEEECCc-EEecCCCCCHHHHHHHHHHHHHHcCCcccCCCceEEEEcCCCCEEEEEEcCCcCCCc
Confidence 3568888776533333333222 22111257888999888888776531 22333322 357776432221111
Q ss_pred eEEEEECcccc---------cc-----cccccccccCCcEEEEEcCCCCcHHHHHHHHHhcccc-CCCCeEEEEcCCCcc
Q 038101 169 GLTCRVGRAVS---------GS-----ANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLAN-DYKKRVMIVDTSSEI 233 (660)
Q Consensus 169 ~Lt~rygr~v~---------G~-----a~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~GkrV~~Vdq~~eI 233 (660)
.+++|...... |. ...|...+..+.+++|.|++|||||||++.|++.+.. ....++..+.+..|+
T Consensus 111 ~~~IRk~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 111 TFAIRKKAVAIFTLDQYVERGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred EEEEECCCCCCCCHHHHHhcCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 24444322111 10 1122223678899999999999999999999987421 124578888888887
Q ss_pred ccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCE-EEEEEcChhHHHHh
Q 038101 234 GGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQ-LVATAHGVTIENLI 311 (660)
Q Consensus 234 a~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gvt-VI~TtH~~~l~~~i 311 (660)
.. ++.+.-.... +.+....-++..++.++||.||+.|+-.. ++...-..++.|.. .+.|.|..+....+
T Consensus 191 ~~----~~~~~v~~~~----~~~~~~~~ll~~aLR~~PD~IivGEiR~~-Ea~~~l~A~~tGh~G~~tTiHa~s~~~ai 260 (319)
T PRK13894 191 QC----AAENYVQYHT----SIDVNMTALLKTTLRMRPDRILVGEVRGP-EALDLLMAWNTGHEGGAATLHANNAKAGL 260 (319)
T ss_pred cc----CCCCEEEEec----CCCCCHHHHHHHHhcCCCCEEEEeccCCH-HHHHHHHHHHcCCCceEEEECCCCHHHHH
Confidence 42 1111110000 11112334677888999999999999976 34444455788885 78999998866544
No 440
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.84 E-value=6.3e-09 Score=125.47 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=104.3
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC---C---------------CeEEEEcCCCc-cc------
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY---K---------------KRVMIVDTSSE-IG------ 234 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~---G---------------krV~~Vdq~~e-Ia------ 234 (660)
.+++|+ +++|++++++|||||||||||++++|-+.... | +.++|+.+.+- ++
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 466666 89999999999999999999999999875431 1 23445544321 11
Q ss_pred -----c-CCC----CCC-----------------CCCCcc-------ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 235 -----G-NGD----IPH-----------------PGIGNA-------RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 235 -----~-~~~----ip~-----------------~~Lg~~-------rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
. +.. ++. .|+... .-+...|||+|+|+.++-+++..+.++.+||++
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 0 100 010 011110 123458999999999999999999999999999
Q ss_pred CCccHHHHHHH--------HhcCCEEEEEEcCh-hHHHHhcCcEEEEEcCeEEEEec
Q 038101 281 TKLEAMAASTI--------AQRGIQLVATAHGV-TIENLIMNPSLEMLIGGVQNVTL 328 (660)
Q Consensus 281 sgLD~~a~~~i--------~~~GvtVI~TtH~~-~l~~~i~dril~l~~G~I~~V~l 328 (660)
+|||...+-++ ...+.|++++-|.. ...-.+-|.++.+..|.+.+.+.
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp 345 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGP 345 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEecc
Confidence 99999886654 23577888877654 34556789999999999887653
No 441
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=98.83 E-value=7.1e-08 Score=103.97 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=123.4
Q ss_pred cceeehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCC----Cccceeeccc---eeeccccCceEE-EEe
Q 038101 98 YELIEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAV----DNRAGISRTL---HRISAIRNRKGA-IIG 169 (660)
Q Consensus 98 ~~l~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~----d~R~GI~rtl---hRIs~irn~~Le-I~~ 169 (660)
..+.||.+.-.....+.-.++.+..+....+.+++...+.++..+.+ ...+-++..+ .|+..+..+.-. =..
T Consensus 62 ~~VtdI~vng~~~v~v~~~~~~~~~~~~f~~~~~~~~l~~~la~~~g~~l~~~~P~~d~~l~~g~Rv~~~~~pvs~~g~~ 141 (340)
T TIGR03819 62 PGVTDVLVNGPDEVWVDRGEGLERTDVRFPDEAAVRRLAQRLAAAAGRRLDDAQPWVDGRLPDGTRLHAVLPPVATDGTC 141 (340)
T ss_pred CCCEEEEEcCCCEEEEEECCeEEEcCCCcCCHHHHHHHHHHHHHHcCCcccCCCCeeEeECCCCEEEEEEecCccCCCcE
Confidence 56888888766655554333222233335678889888887765543 1234444433 677765332100 012
Q ss_pred EEEEECccccc--------------ccccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc
Q 038101 170 LTCRVGRAVSG--------------SANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG 235 (660)
Q Consensus 170 Lt~rygr~v~G--------------~a~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~ 235 (660)
+++|.-..... ....|+.++..+.+++|.|++|+|||||++.+++++.+. .++.++.+..|+..
T Consensus 142 i~IR~~~~~~~tl~~l~~~g~~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~--~riv~iEd~~El~~ 219 (340)
T TIGR03819 142 LSLRVPRPRTFTLDELVASGTFPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPD--ERIVLVEDAAELRP 219 (340)
T ss_pred EEEEeeCCccCCHHHHHHcCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCC--CcEEEECCcceecC
Confidence 34443221110 011233336778899999999999999999999999875 45777887777742
Q ss_pred CCCCCCCCCCcc-ccCCCC--CHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCE-EEEEEcChhHHHH
Q 038101 236 NGDIPHPGIGNA-RRMQVP--NSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQ-LVATAHGVTIENL 310 (660)
Q Consensus 236 ~~~ip~~~Lg~~-rrl~vL--SgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gvt-VI~TtH~~~l~~~ 310 (660)
. +.++-.. .+.... .++.-..-.+..+|.++||.|++.|+-.. ++...-..++.|.. ++.|.|..+..+.
T Consensus 220 ~----~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~IivGEiRg~-Ea~~~l~a~~tGh~G~~tTiHA~s~~~~ 293 (340)
T TIGR03819 220 D----HPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIVVGEVRGA-EVVDLLAALNTGHDGGAGTLHANSPADV 293 (340)
T ss_pred C----CCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEEEeCcCcH-HHHHHHHHHHcCCCceEEeeCCCCHHHH
Confidence 1 1111100 011111 11223345677889999999999999965 34444455788986 7889999876554
No 442
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.81 E-value=4.4e-08 Score=97.47 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHH----Hh--cCCEEEEEEcChhHHHHhcCcEEE
Q 038101 251 QVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTI----AQ--RGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 251 ~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i----~~--~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
..+|+|||..++||..++ ....++||||+.++||...+..+ .+ .+.++|++||...+.. .++..+.
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~ 210 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIG 210 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 478999999999986653 56789999999999999998776 23 3599999999988765 4566543
No 443
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=4.2e-08 Score=99.66 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=70.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCC-ccccCCC-CCCCCCCcc--ccCCCCCHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSS-EIGGNGD-IPHPGIGNA--RRMQVPNSEMQHKVLI 263 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~~-eIa~~~~-ip~~~Lg~~--rrl~vLSgG~qqrv~I 263 (660)
..+|++++|+||||+||||+++.|+...--. .| .+|+... .+..... +.+.+-.+. .....+...+++- .-
T Consensus 27 ~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G---~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~-~~ 102 (218)
T cd03286 27 ATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG---MDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSET-AN 102 (218)
T ss_pred ecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC---CccCccccEeccccEEEEecCcccccccCcchHHHHHHHH-HH
Confidence 4568999999999999999999998763211 12 1222211 1111000 011110000 0112223334333 22
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHH--------HHhc-CCEEEEEEcChhHHHHhc
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAAST--------IAQR-GIQLVATAHGVTIENLIM 312 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~--------i~~~-GvtVI~TtH~~~l~~~i~ 312 (660)
....+.+|.++++|||+.|.++..... +.+. |.++|++||+.++...++
T Consensus 103 il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 103 ILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 233347899999999999988876333 3444 899999999999887765
No 444
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=98.80 E-value=5.3e-08 Score=105.19 Aligned_cols=115 Identities=21% Similarity=0.296 Sum_probs=78.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc--ccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA--RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~--rrl~vLSgG~qqrv~IA~a 266 (660)
+..+.+++|.||+|||||||+++|++.+.++ .++..+.+..|+.. ++...-.. ..-..-.++....-++..+
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~--~rivtiEd~~El~l----~~~~~v~l~~~~~~~~~~~~t~~~ll~~~ 232 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ--ERLITIEDTLELVI----PHENHVRLLYSKNGAGLGAVTAEHLLQAS 232 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCC--CCEEEECCCccccC----CCCCEEEEEeeccccCcCccCHHHHHHHH
Confidence 7789999999999999999999999998764 46777877777632 22110000 0000011222344577889
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHHHhcCCE-EEEEEcChhHHHH
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTIAQRGIQ-LVATAHGVTIENL 310 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i~~~Gvt-VI~TtH~~~l~~~ 310 (660)
+.++|+.|++.|..... +...-..++.|.. ++.|.|..+....
T Consensus 233 LR~~pD~IivGEiR~~e-a~~~l~a~~tGh~G~ltTiHa~s~~~a 276 (344)
T PRK13851 233 LRMRPDRILLGEMRDDA-AWAYLSEVVSGHPGSISTIHGANPVQG 276 (344)
T ss_pred hcCCCCeEEEEeeCcHH-HHHHHHHHHhCCCcEEECCCCCCHHHH
Confidence 99999999999999753 3333444677775 8999999876554
No 445
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.79 E-value=6.1e-09 Score=99.45 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHHH-------hcCCEEEEEEcChhHH
Q 038101 252 VPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTIA-------QRGIQLVATAHGVTIE 308 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i~-------~~GvtVI~TtH~~~l~ 308 (660)
.+|.|+++.+.+...+...+ .+|++|||-.+|.|..++.+. +.+.+||+|||...++
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35999999988777777665 899999999999999987762 2489999999998764
No 446
>cd02644 R3H_jag R3H domain found in proteins homologous to Bacillus subtilus Jag, which is associated with SpoIIIJ. SpoIIIJ is necessary for the third stage of sporulation. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.78 E-value=1.1e-08 Score=86.10 Aligned_cols=57 Identities=28% Similarity=0.324 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCCceeecCCCChhHHHHHHHHHHHcC-cceeeccCCCCceEEEcCC
Q 038101 557 EEARVAIEQVVIPKGESVELLPRPSYILSIQIDLIRKYQ-LHYQRVGKEPDARLRILPF 614 (660)
Q Consensus 557 ~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~-l~~~~~g~~~~~r~~i~p~ 614 (660)
+-|+.|+++| ...|++|+|-|-+++-|+++|++++.|. |.|+|+|++|+|+|.|+|.
T Consensus 10 ~~A~~~a~~v-~~tg~~~~l~PM~~~eRrivH~~~~~~~~l~T~S~G~~~~R~vvI~~~ 67 (67)
T cd02644 10 RLAERAAEKV-RRTGKPVKLEPMNAYERRIIHDALANDEDVETESEGEGPYRRVVISPK 67 (67)
T ss_pred HHHHHHHHHH-HHHCCeeEeCCCCHHHHHHHHHHHHhCCCceEEeecCCCCeEEEEEeC
Confidence 4488899995 5579999999999999999999999999 9999999999999999984
No 447
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.74 E-value=1.7e-07 Score=108.94 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 250 MQVPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 250 l~vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
...||||+.||+-||.=|..+. .+.||||||+||-......+ ...|-|||++-|+++.+ ..+|.++-+
T Consensus 820 atTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI-k~AD~IIDL 897 (935)
T COG0178 820 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI-KTADWIIDL 897 (935)
T ss_pred cccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE-eecCEEEEc
Confidence 3469999999999999998776 99999999999988876664 57899999999999976 458877654
No 448
>PRK09183 transposase/IS protein; Provisional
Probab=98.73 E-value=1e-08 Score=106.39 Aligned_cols=99 Identities=19% Similarity=0.382 Sum_probs=59.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
++.|++++|+||||+|||||+.+|+..... .|.+|.|+.....+.. +..... .++. . ..+.. ..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~~~l~~~--------l~~a~~----~~~~-~-~~~~~-~~ 162 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVR-AGIKVRFTTAADLLLQ--------LSTAQR----QGRY-K-TTLQR-GV 162 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeHHHHHHH--------HHHHHH----CCcH-H-HHHHH-Hh
Confidence 788999999999999999999999766543 4778887764321100 000000 0000 0 11111 24
Q ss_pred cCCcEEEEeCCCC-CccHHHHHHH-------HhcCCEEEEEEcC
Q 038101 269 HMPQVIVIDEIGT-KLEAMAASTI-------AQRGIQLVATAHG 304 (660)
Q Consensus 269 ~~P~VLILDEPgs-gLD~~a~~~i-------~~~GvtVI~TtH~ 304 (660)
..|++||+||.+. .++...+..+ .+.+ ++|+||+-
T Consensus 163 ~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 163 MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCC
Confidence 6899999999985 4666554333 2344 45666643
No 449
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.69 E-value=4.7e-08 Score=122.52 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=67.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+.+..||+||+||++||+++..+| +++|||||+++||+..+..+ ++.|.|||+++|+.++. .+||+++.+
T Consensus 472 R~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~vi-~~aDrVi~L 550 (1809)
T PRK00635 472 RALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQMI-SLADRIIDI 550 (1809)
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-HhCCEEEEE
Confidence 567899999999999999999999 89999999999999987765 46799999999999954 789999999
Q ss_pred E------cCeEEE
Q 038101 319 L------IGGVQN 325 (660)
Q Consensus 319 ~------~G~I~~ 325 (660)
. .|++..
T Consensus 551 ~pGag~~gG~Iv~ 563 (1809)
T PRK00635 551 GPGAGIFGGEVLF 563 (1809)
T ss_pred cCCcccCCCEEEE
Confidence 5 556654
No 450
>PRK06526 transposase; Provisional
Probab=98.65 E-value=1.4e-08 Score=105.31 Aligned_cols=101 Identities=21% Similarity=0.332 Sum_probs=59.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHH
Q 038101 188 LVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 188 lI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL 267 (660)
+++.+++++|+||+|+|||+|+..|+..+.. .|.+|.|+....-+... ... .+.+.-.+ .+ ..
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~~~l~~~l--------~~~-----~~~~~~~~-~l--~~ 156 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-AGHRVLFATAAQWVARL--------AAA-----HHAGRLQA-EL--VK 156 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHH-CCCchhhhhHHHHHHHH--------HHH-----HhcCcHHH-HH--HH
Confidence 4778899999999999999999999876543 46677665432211000 000 00010001 11 12
Q ss_pred ccCCcEEEEeCCCC-CccHHHHHHH------HhcCCEEEEEEcCh
Q 038101 268 NHMPQVIVIDEIGT-KLEAMAASTI------AQRGIQLVATAHGV 305 (660)
Q Consensus 268 ~~~P~VLILDEPgs-gLD~~a~~~i------~~~GvtVI~TtH~~ 305 (660)
..++++||+||++. ..+......+ +.....+|+||+-.
T Consensus 157 l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 35789999999986 4566554433 12234577777644
No 451
>smart00393 R3H Putative single-stranded nucleic acids-binding domain.
Probab=98.65 E-value=9.3e-08 Score=82.28 Aligned_cols=65 Identities=32% Similarity=0.403 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCceeecCCCChhHHHHHHHHHHHcCcceeeccCCCCceEEEcCC
Q 038101 550 SEKIDALEEARVAIEQVVIPKGESVELLPRPSYILSIQIDLIRKYQLHYQRVGKEPDARLRILPF 614 (660)
Q Consensus 550 ~~~~~al~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p~ 614 (660)
....++|++....+.+.|.+.+++++|.|-+++-|++.|++++.|+|.|+|.|.+|+|+|.|+|.
T Consensus 15 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~pm~~~~R~~iH~~a~~~~l~s~S~g~g~~R~vvv~~~ 79 (79)
T smart00393 15 PRRREELIELELEIARFVKSTKESVELPPMNSYERKIVHELAEKYGLESESFGEGPKRRVVISKK 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEcCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999873
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.60 E-value=9.1e-08 Score=96.66 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=73.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHh-ccccCCCCeEEEEcCCCcccc------CCCCCC--------CCCCc--cccCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDTSSEIGG------NGDIPH--------PGIGN--ARRMQ 251 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iag-lL~p~~GkrV~~Vdq~~eIa~------~~~ip~--------~~Lg~--~rrl~ 251 (660)
+..|.+++|.|+||+|||||...++- .+. .|.++.|+........ ..++.- ..+-. .....
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 77899999999999999999999853 232 3678989876542210 000000 00000 01122
Q ss_pred CCCHHHHHHHHHHHHHcc--CCcEEEEeCCCC---CccHHHHHHH-------HhcCCEEEEEEcChhH
Q 038101 252 VPNSEMQHKVLIEAVENH--MPQVIVIDEIGT---KLEAMAASTI-------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~~--~P~VLILDEPgs---gLD~~a~~~i-------~~~GvtVI~TtH~~~l 307 (660)
..+.++++.+........ +|+++++|||+. ..|......+ ++.|.++++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 234455666655555553 999999999995 3444433332 5679999999997654
No 453
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.59 E-value=2.7e-07 Score=97.59 Aligned_cols=206 Identities=16% Similarity=0.234 Sum_probs=127.8
Q ss_pred eehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcC------C----CCCccceeeccc-eeeccccCc---eEE
Q 038101 101 IEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGD------F----AVDNRAGISRTL-HRISAIRNR---KGA 166 (660)
Q Consensus 101 ~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~------f----s~d~R~GI~rtl-hRIs~irn~---~Le 166 (660)
-.|-|.+|-||..|..+.-..+...++|.+++...+..+=+ | -.|...++.+.. .|+.+...+ .+.
T Consensus 18 SDiHL~~G~pp~~Ri~G~l~~~~~p~lt~~~~~~l~~~il~~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~qr~~~a~v 97 (353)
T COG2805 18 SDLHLSAGLPPRIRIDGELRPINYPPLTAEDVQSLLREILNDDQRKILEENGELDFSYTLPGVARFRVNAFKQRGGYALV 97 (353)
T ss_pred CchhhccCCCceEEecCceeecCCCCCCHHHHHHHHHHHhCHHHHHHHHHhcceeEEEecCCcceEEeehhhhcCCcEEE
Confidence 34678899999999876555566555888777655443220 1 112222333221 355544332 223
Q ss_pred EEeEEEEECc-ccccccccccccc-cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC---CCCCC
Q 038101 167 IIGLTCRVGR-AVSGSANLLQDLV-QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN---GDIPH 241 (660)
Q Consensus 167 I~~Lt~rygr-~v~G~a~iL~dlI-~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~---~~ip~ 241 (660)
++-+...+-. +-.|...++.+++ .+...+++.||.||||||.|-.|...+.....+.|..+.+.-|+-.. ..+.+
T Consensus 98 lR~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~Q 177 (353)
T COG2805 98 LRLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQ 177 (353)
T ss_pred EeccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhH
Confidence 3333332221 1123344566663 34579999999999999999999988876666677777766554111 01112
Q ss_pred CCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcE
Q 038101 242 PGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPS 315 (660)
Q Consensus 242 ~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~i~dri 315 (660)
..+|. +..| ---++.+||-.+||||++-|.-.-.....+-++++.|.-|+.|-|..+-+.. -|++
T Consensus 178 REvG~----dT~s----F~~aLraALReDPDVIlvGEmRD~ETi~~ALtAAETGHLV~~TLHT~sA~~t-i~Ri 242 (353)
T COG2805 178 REVGR----DTLS----FANALRAALREDPDVILVGEMRDLETIRLALTAAETGHLVFGTLHTNSAAKT-IDRI 242 (353)
T ss_pred HHhcc----cHHH----HHHHHHHHhhcCCCEEEEeccccHHHHHHHHHHHhcCCEEEEecccccHHHH-HHHH
Confidence 22222 1111 2245778999999999999999777777777889999999999999886653 3444
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=98.57 E-value=2.5e-07 Score=104.16 Aligned_cols=111 Identities=21% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
++.+++|.||+||||||+|+.+...+... +++|..+.+..|+... ++.+..+. -..|.-..-++..++.++
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~-~~~iiTiEDpvE~~~~-~~~q~~v~-------~~~g~~f~~~lr~~LR~d 311 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTP-ERNILTVEDPVEYQIE-GIGQIQVN-------PKIGLTFAAGLRAILRQD 311 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCC-CCcEEEEcCCeeeecC-CCceEEEc-------cccCccHHHHHHHHHhcC
Confidence 45689999999999999999877666543 5678888776664211 11111111 011233446777889999
Q ss_pred CcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 271 PQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
||+|++.|+.....+..+-+++..|..|+.|.|..+....
T Consensus 312 PDvI~vGEiRd~eta~~a~~aa~tGHlvlsTlHa~sa~~a 351 (486)
T TIGR02533 312 PDIIMVGEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGA 351 (486)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 9999999999887777777788999999999999886553
No 455
>PRK08181 transposase; Validated
Probab=98.55 E-value=4.9e-08 Score=102.14 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=61.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 038101 187 DLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 187 dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~a 266 (660)
++++.+++++|+||+|+|||+|+.+|+..+.. .|.+|.|+.....+.... ... ...+ ..+ .+ -
T Consensus 101 ~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~~~L~~~l~--------~a~--~~~~--~~~--~l--~ 163 (269)
T PRK08181 101 SWLAKGANLLLFGPPGGGKSHLAAAIGLALIE-NGWRVLFTRTTDLVQKLQ--------VAR--RELQ--LES--AI--A 163 (269)
T ss_pred HHHhcCceEEEEecCCCcHHHHHHHHHHHHHH-cCCceeeeeHHHHHHHHH--------HHH--hCCc--HHH--HH--H
Confidence 46788999999999999999999999876543 477888876533221000 000 0011 111 11 2
Q ss_pred HccCCcEEEEeCCCC-CccHHHHHHH------HhcCCEEEEEEcC
Q 038101 267 ENHMPQVIVIDEIGT-KLEAMAASTI------AQRGIQLVATAHG 304 (660)
Q Consensus 267 L~~~P~VLILDEPgs-gLD~~a~~~i------~~~GvtVI~TtH~ 304 (660)
...++++|||||++. ..+......+ +..+..+|+||.-
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 345899999999985 3555544333 1223567777754
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=2.5e-07 Score=95.81 Aligned_cols=138 Identities=14% Similarity=0.205 Sum_probs=90.9
Q ss_pred cccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-e-EEE-EcCCC-c-------c-----ccCCCCCCC--
Q 038101 183 NLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-R-VMI-VDTSS-E-------I-----GGNGDIPHP-- 242 (660)
Q Consensus 183 ~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-r-V~~-Vdq~~-e-------I-----a~~~~ip~~-- 242 (660)
.+++-+ +..|+.++|+||+|||||||++.|++.+...... . +.+ +.++. + + ....+.|..
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 355555 7889999999999999999999999887654221 1 222 33321 1 1 000000100
Q ss_pred ---------------CCCc--------------c-cc----C-CCCCHHH--------HHHHHHHHHHccCCcEEEEeCC
Q 038101 243 ---------------GIGN--------------A-RR----M-QVPNSEM--------QHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 243 ---------------~Lg~--------------~-rr----l-~vLSgG~--------qqrv~IA~aL~~~P~VLILDEP 279 (660)
..|. . +. . ..+|+|+ +|++.+|+++..++.|.++ +
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~ 162 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--A 162 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--e
Confidence 0000 0 00 0 2358888 9999999998789999999 9
Q ss_pred CCCccHHH------HHHHHhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 280 GTKLEAMA------ASTIAQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 280 gsgLD~~a------~~~i~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
|..+|... ...++..+-+.|+.+|..... ...+.|.++..|.+
T Consensus 163 T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~-~~~paI~vl~s~sr 211 (249)
T cd01128 163 TALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAER-RIFPAIDILKSGTR 211 (249)
T ss_pred eheecCCCcccchHHHHHhcCCCcEEEEchHHhhC-CCCCeEEEcCCCCc
Confidence 98887321 334455678999999998765 46788999988876
No 457
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=2.6e-07 Score=112.35 Aligned_cols=76 Identities=11% Similarity=-0.021 Sum_probs=67.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHcc----------CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHH
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENH----------MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~----------~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~ 309 (660)
.+.+..+|||+++++.||++++. +|++||||||+++||+.....+ ...|.+|+++||+..+..
T Consensus 945 ~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~ 1024 (1042)
T TIGR00618 945 VRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRE 1024 (1042)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 35778999999999999999986 7999999999999999986654 457899999999999999
Q ss_pred HhcCcEEEEEcCe
Q 038101 310 LIMNPSLEMLIGG 322 (660)
Q Consensus 310 ~i~dril~l~~G~ 322 (660)
.+++++.++..++
T Consensus 1025 ~~~~~i~v~~~~~ 1037 (1042)
T TIGR00618 1025 RIPHRILVKKTNA 1037 (1042)
T ss_pred hhCCEEEEEECCC
Confidence 9999999887643
No 458
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.50 E-value=2.7e-07 Score=105.32 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHHccC----CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 251 QVPNSEMQHKVLIEAVENHM----PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 251 ~vLSgG~qqrv~IA~aL~~~----P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
..+|+||++|++||++++.. |++||+|||++++|+..+..+ ...|.+||++||+..++. +||+++.+..
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence 57899999999999999985 699999999999999987765 235899999999998885 7999998876
Q ss_pred C
Q 038101 321 G 321 (660)
Q Consensus 321 G 321 (660)
|
T Consensus 518 ~ 518 (563)
T TIGR00634 518 E 518 (563)
T ss_pred c
Confidence 5
No 459
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=98.50 E-value=2.4e-07 Score=76.05 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCCceeecCCCChhHHHHHHHHHHHcCcceeeccCCCCceEEEcC
Q 038101 556 LEEARVAIEQVVIPKGESVELLPRPSYILSIQIDLIRKYQLHYQRVGKEPDARLRILP 613 (660)
Q Consensus 556 l~e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 613 (660)
+++....+.+.++..+++++|.|-++.-|++.|++++.|+|.|.|.|.+|+|+|.|++
T Consensus 5 l~~~~~~~~~~~~~~~~~~~f~pm~~~~R~~iH~~a~~~gL~s~S~g~~~~R~vvv~k 62 (63)
T PF01424_consen 5 LEKIEEKLIEFFLSSGESLEFPPMNSFERKLIHELAEYYGLKSKSEGEGPNRRVVVSK 62 (63)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEC--SHHHHHHHHHHHHCTEEEEEESSSSSSEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEe
Confidence 4444445555556667799999999999999999999999999999999999999986
No 460
>cd02325 R3H R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=98.50 E-value=2.7e-07 Score=72.80 Aligned_cols=57 Identities=32% Similarity=0.424 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCC-CceeecCCCChhHHHHHHHHHHHcCcceeeccCCCCceEEEcC
Q 038101 557 EEARVAIEQVVIPK-GESVELLPRPSYILSIQIDLIRKYQLHYQRVGKEPDARLRILP 613 (660)
Q Consensus 557 ~e~~~ai~~~v~~~-~~~vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~~r~~i~p 613 (660)
++.+.+++..+... +..+++.|.++..|+++|++++.|+|.++|.|.+++|++.|++
T Consensus 2 ~~~~~~l~~f~~~~~~~~~~~~p~~~~~R~~vH~la~~~~L~s~s~g~~~~r~v~i~~ 59 (59)
T cd02325 2 EEREEELEAFAKDAAGKSLELPPMNSYERKLIHDLAEYYGLKSESEGEGPNRRVVITK 59 (59)
T ss_pred hHHHHHHHHHHHhhcCCeEEcCCCCHHHHHHHHHHHHHCCCEEEEecCCCCcEEEEeC
Confidence 46778888888888 9999999999999999999999999999999999999999975
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=5.7e-07 Score=99.83 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=97.6
Q ss_pred EEEeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-CccccC--CCCC
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS-SEIGGN--GDIP 240 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~-~eIa~~--~~ip 240 (660)
+...++..|... ..+++.+ +..|+.++|+|++|+|||||+++|++...++.+ .++++.++ .+.... ..+.
T Consensus 132 ~r~~i~~~l~TG----iraID~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~g-vI~~iGerg~ev~e~~~~~l~ 206 (432)
T PRK06793 132 EREEITDVFETG----IKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADIN-VISLVGERGREVKDFIRKELG 206 (432)
T ss_pred heechhhccCCC----CEEEeccceecCCcEEEEECCCCCChHHHHHHHhccCCCCeE-EEEeCCCCcccHHHHHHHHhh
Confidence 344555555422 2466665 889999999999999999999999999887654 45566655 222110 0011
Q ss_pred CCCCCc---cccCCCCCHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCccHHHHHHH-----HhcCCEEEEEEcCh
Q 038101 241 HPGIGN---ARRMQVPNSEMQHKVLIEAVEN-------HMPQVIVIDEIGTKLEAMAASTI-----AQRGIQLVATAHGV 305 (660)
Q Consensus 241 ~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~-------~~P~VLILDEPgsgLD~~a~~~i-----~~~GvtVI~TtH~~ 305 (660)
..++.. .......|+++|.++..+++.. .++-+|++|++|...|+...-.+ -..|.+..+.+|-.
T Consensus 207 ~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~ 286 (432)
T PRK06793 207 EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMK 286 (432)
T ss_pred hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccch
Confidence 112211 0123456899999999888876 78999999999999998632222 12478888888855
Q ss_pred hHHHHhcCcEEEEEcCeEE
Q 038101 306 TIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 306 ~l~~~i~dril~l~~G~I~ 324 (660)
.+.+..+. ...|.|.
T Consensus 287 ~L~ERag~----~~~GSiT 301 (432)
T PRK06793 287 KLLERSGK----TQKGSIT 301 (432)
T ss_pred hHHHHhcc----CCCcceE
Confidence 55554433 3355553
No 462
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.46 E-value=2.4e-06 Score=91.22 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=125.7
Q ss_pred cceeehhhhCCCccEEecCCCCcccc-cCcCCHHHHHHHHhhhcCCCCCc----cceeecc---ceeeccccCceEEEEe
Q 038101 98 YELIEVVMDLGRKPLARFPSGDFSLS-DCQITVHHIEHATSQVGDFAVDN----RAGISRT---LHRISAIRNRKGAIIG 169 (660)
Q Consensus 98 ~~l~EI~Ld~gR~~~arf~~~~~~l~-~~~vt~eDl~~~~~~lg~fs~d~----R~GI~rt---lhRIs~irn~~LeI~~ 169 (660)
..++||.+.--.+....-....++.. ....+.+++...+.+++.+++.+ .+=++.+ .+|++....+.....+
T Consensus 25 ~~iedI~~n~~~~v~v~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~gk~is~~~Pi~~~~lp~g~Ri~i~~~~~v~~~~ 104 (312)
T COG0630 25 PRIEDIVVNGPGPVYVEHKGGGSYVTNIPFLTEEELDSLAIRLAQRSGKPISEANPILDATLPDGSRIQIVLGPEVSPNG 104 (312)
T ss_pred CCceEEEecCCceEEEEEcCCcceeccCccCCHHHHHHHHHHHHHHcCCCCCCCCCceEeEcCCCcEEEEEeCCCcCCCC
Confidence 45778877754444443333222322 23567788888888777666432 2222222 3677755444333333
Q ss_pred --EEEEECcccc---------cc-----cccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc
Q 038101 170 --LTCRVGRAVS---------GS-----ANLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI 233 (660)
Q Consensus 170 --Lt~rygr~v~---------G~-----a~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eI 233 (660)
++.|--.... |. ..-|+..++.+.++.|+|++|+||||+|++|..++.+. .++..+.+..|+
T Consensus 105 ~s~~IRk~~~~~~t~~~l~~~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~--~rivtIEdt~E~ 182 (312)
T COG0630 105 SSFTIRKFSDEPITPEDLIEYGTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPE--ERIVTIEDTPEL 182 (312)
T ss_pred CcEEEEcCCCCCCCHHHHhhcCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCch--hcEEEEeccccc
Confidence 3433222111 00 01122337899999999999999999999999999875 567888777776
Q ss_pred ccCCCCCCCCCCcc--ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 234 GGNGDIPHPGIGNA--RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 234 a~~~~ip~~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
. +||.++-.. +.-..-+++..-.-.+.+++.++|+.||++|.-... ....-+....|...+.|.|..+....
T Consensus 183 ~----~~~~n~~~l~~r~~~~~~~~v~~~dll~aalR~rPd~IivgEvrg~e-~~~~~~a~~tGh~~isT~ha~s~~~~ 256 (312)
T COG0630 183 K----LPHENWVQLVTREGESGSSEVSLEDLLRAALRQRPDYIIVGELRGRE-AFVLFQAMQTGHGTISTIHADSPELV 256 (312)
T ss_pred c----CCCCCEEEEEecCCCCCccccCHHHHHHHHHhcCCCeEEEeeeecHH-HHHHHHHHhcCCCceeEEecCCHHHH
Confidence 3 333322110 111111333455677889999999999999997653 34444556788899999998876543
No 463
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.45 E-value=7.4e-07 Score=99.66 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=83.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.+-.++++.||.||||||+|..+...+... .++|..+.+.-|+.. .++.+..+.. ..|+----.+.+.|-+
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~-~~nI~TiEDPVE~~~-~gI~Q~qVN~-------k~gltfa~~LRa~LRq 326 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTP-ERNIITIEDPVEYQL-PGINQVQVNP-------KIGLTFARALRAILRQ 326 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC-CceEEEeeCCeeeec-CCcceeeccc-------ccCCCHHHHHHHHhcc
Confidence 455799999999999999999998877643 456888888777521 1122211111 1233334567788999
Q ss_pred CCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 270 MPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
+||||+++|+-....++.+-+.+..|..|+.|.|..+....
T Consensus 327 DPDvImVGEIRD~ETAeiavqAalTGHLVlSTlHtnda~~a 367 (500)
T COG2804 327 DPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPGA 367 (500)
T ss_pred CCCeEEEeccCCHHHHHHHHHHHhcCCeEeeecccCchHHH
Confidence 99999999999888888888889999999999999886544
No 464
>PRK10436 hypothetical protein; Provisional
Probab=98.44 E-value=9.1e-07 Score=99.08 Aligned_cols=112 Identities=24% Similarity=0.305 Sum_probs=82.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.++.+++|.||.||||||+|..+...+... +++|..+.+..|+... ++.+..++. ..|.-..-++..++-+
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~TiEDPvE~~l~-gi~Q~~v~~-------~~g~~f~~~lr~~LR~ 286 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICSVEDPVEIPLA-GINQTQIHP-------KAGLTFQRVLRALLRQ 286 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEEecCCccccCC-CcceEeeCC-------ccCcCHHHHHHHHhcC
Confidence 467899999999999999998887776543 5678888877775221 111111111 1223345677888999
Q ss_pred CCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 270 MPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
+||+|++.|+.....+..+-+++..|..|+.|.|..+....
T Consensus 287 dPDvI~vGEIRD~eta~~al~AA~TGHlVlsTlHa~~a~~a 327 (462)
T PRK10436 287 DPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSET 327 (462)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHcCCcEEEeeccCChHHH
Confidence 99999999999877777777778899999999999876543
No 465
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.42 E-value=5.2e-07 Score=89.55 Aligned_cols=35 Identities=3% Similarity=0.103 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHccCCcEEEEeCCC-----CCccHHHHHHH
Q 038101 257 MQHKVLIEAVENHMPQVIVIDEIG-----TKLEAMAASTI 291 (660)
Q Consensus 257 ~qqrv~IA~aL~~~P~VLILDEPg-----sgLD~~a~~~i 291 (660)
++++..||++++++|+++++|||+ ++||+.....+
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~ 196 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQA 196 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHH
Confidence 788899999999999999999999 99999998876
No 466
>PRK10869 recombination and repair protein; Provisional
Probab=98.40 E-value=8.3e-07 Score=101.40 Aligned_cols=70 Identities=9% Similarity=0.098 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 251 QVPNSEMQHKVLIEAVENH----MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 251 ~vLSgG~qqrv~IA~aL~~----~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
..+|+||++|++||++++. +|++||+|||++++|...+..+ ...+.+||++||...++ .+||+.+.+..
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEec
Confidence 4789999999999999997 5899999999999999987765 23579999999999877 68999888765
Q ss_pred C
Q 038101 321 G 321 (660)
Q Consensus 321 G 321 (660)
+
T Consensus 508 ~ 508 (553)
T PRK10869 508 E 508 (553)
T ss_pred c
Confidence 3
No 467
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=98.38 E-value=1.3e-06 Score=100.05 Aligned_cols=112 Identities=20% Similarity=0.272 Sum_probs=81.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
....+++|.||.||||||+|..+...+... .++|..+.+..|+... ++.+..+.. ..|.-..-++..++-+
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~~~-~~~q~~v~~-------~~g~~~~~~l~~~LR~ 384 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEINLP-GINQVNVNP-------KIGLTFAAALRSFLRQ 384 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceecCC-CceEEEecc-------ccCCCHHHHHHHHhcc
Confidence 356799999999999999999888887543 4678777777665311 111111110 1223345678889999
Q ss_pred CCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHH
Q 038101 270 MPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~ 310 (660)
+||+|++.|+.....+..+-+.+..|..|+.|.|..+-...
T Consensus 385 dPDvI~vGEiRd~eta~~a~~aa~tGHlv~tTlHa~~a~~~ 425 (564)
T TIGR02538 385 DPDIIMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNDAPET 425 (564)
T ss_pred CCCEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHH
Confidence 99999999999776666667778899999999999876543
No 468
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.36 E-value=4.8e-07 Score=99.19 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=96.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe---------EEEEcCCCcccc---------CCC---------CCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKR---------VMIVDTSSEIGG---------NGD---------IPH 241 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gkr---------V~~Vdq~~eIa~---------~~~---------ip~ 241 (660)
...|+..+++|-||.||||.++.++|-+.|..|+- +++. ...|+.. ... +|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~f-rgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYF-RGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhh-hhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 57899999999999999999999999999876531 1111 0111100 000 010
Q ss_pred -------------------------CCCC--ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH---
Q 038101 242 -------------------------PGIG--NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--- 291 (660)
Q Consensus 242 -------------------------~~Lg--~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--- 291 (660)
+.++ ..|.+.++|+|+-||.+||++.+...++.++|||.+.||...+...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 0111 1245678999999999999999999999999999999999864432
Q ss_pred ----HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 292 ----AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 292 ----~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
.+-..=||++.||++..+.+.|-+..+..
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 34567799999999999999998877753
No 469
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.35 E-value=8.9e-07 Score=99.95 Aligned_cols=75 Identities=11% Similarity=0.147 Sum_probs=62.0
Q ss_pred cCCCCCHHHHHHHHHHHHHc----------cCCcEEEEeCCC-CCccHHHHHHH----Hh-cCCEEEEEEcChhHHHHhc
Q 038101 249 RMQVPNSEMQHKVLIEAVEN----------HMPQVIVIDEIG-TKLEAMAASTI----AQ-RGIQLVATAHGVTIENLIM 312 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~----------~~P~VLILDEPg-sgLD~~a~~~i----~~-~GvtVI~TtH~~~l~~~i~ 312 (660)
.+..+|+||+||++||++++ .+|++||+|||+ ++||+.....+ .+ .|.+||++||+..+.. .+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~~ 543 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-KF 543 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-hh
Confidence 45789999999999999887 589999999998 68999987765 22 5889999999977654 68
Q ss_pred CcEEEEEc-CeEE
Q 038101 313 NPSLEMLI-GGVQ 324 (660)
Q Consensus 313 dril~l~~-G~I~ 324 (660)
|+++.+.. |+..
T Consensus 544 d~~~~l~~~~~~~ 556 (562)
T PHA02562 544 DRHLKMEKVGRFS 556 (562)
T ss_pred hcEEEEEEECCee
Confidence 99888875 5543
No 470
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.35 E-value=1.8e-06 Score=76.85 Aligned_cols=99 Identities=27% Similarity=0.425 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHH---HHHHHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM---QHKVLIEAVE 267 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~---qqrv~IA~aL 267 (660)
.+..++|.||+|+|||||++.+++.+... +..+.+++........ ...... .+........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 81 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLLEGL---------------VVAELFGHFLVRLLFELAE 81 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhhhhh---------------HHHHHhhhhhHhHHHHhhc
Confidence 47899999999999999999999987532 4456666543321100 000000 2344555666
Q ss_pred ccCCcEEEEeCCCCCccHHHHHH----H---H-----hcCCEEEEEEcChh
Q 038101 268 NHMPQVIVIDEIGTKLEAMAAST----I---A-----QRGIQLVATAHGVT 306 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~----i---~-----~~GvtVI~TtH~~~ 306 (660)
..++.+|++||.... +...... + . ..++.+|++++...
T Consensus 82 ~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 778999999999864 1222111 2 1 25778888887654
No 471
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.32 E-value=4.8e-06 Score=99.63 Aligned_cols=115 Identities=21% Similarity=0.315 Sum_probs=69.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCCCeEEEEcCCC-ccccCCCCCCCCCCccc-cCCCCCHHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL--ANDYKKRVMIVDTSS-EIGGNGDIPHPGIGNAR-RMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~GkrV~~Vdq~~-eIa~~~~ip~~~Lg~~r-rl~vLSgG~qqrv~IA~ 265 (660)
..+.+++|.|||++||||+||.++-.. +. .| .+|+... .++....+ ...+|... -....|.-|.....++.
T Consensus 605 ~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq-~G---~~VPa~~a~i~~~d~I-~triga~d~i~~g~STF~~E~~~~~~ 679 (854)
T PRK05399 605 EERRLLLITGPNMAGKSTYMRQVALIVLLAQ-IG---SFVPAESARIGIVDRI-FTRIGASDDLASGRSTFMVEMTETAN 679 (854)
T ss_pred CCCcEEEEECCCCCCcHHHHHHHHHHHHHHh-cC---CceeccceEecccCee-eeccCcccccccCcccHHHHHHHHHH
Confidence 345799999999999999999987432 21 22 1233221 11111000 00122111 12345666666677777
Q ss_pred HHcc--CCcEEEEeCC---CCCccHHHHHH-----HHhc-CCEEEEEEcChhHHH
Q 038101 266 VENH--MPQVIVIDEI---GTKLEAMAAST-----IAQR-GIQLVATAHGVTIEN 309 (660)
Q Consensus 266 aL~~--~P~VLILDEP---gsgLD~~a~~~-----i~~~-GvtVI~TtH~~~l~~ 309 (660)
++.+ ++.++|+||| |+.+|..+... +.+. |..+|++||..++..
T Consensus 680 il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 680 ILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred HHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 7665 8999999999 55677655322 3455 589999999976554
No 472
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.31 E-value=3.7e-06 Score=93.69 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=88.0
Q ss_pred cccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccccC--CCCCCCCCCcc---ccCCCCC
Q 038101 183 NLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS-EIGGN--GDIPHPGIGNA---RRMQVPN 254 (660)
Q Consensus 183 ~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~-eIa~~--~~ip~~~Lg~~---rrl~vLS 254 (660)
.+++++ +.+|+.++|+|+||+|||||+++|+++..++.+ .|.++.++. ++... ..+...++... --...-+
T Consensus 147 ~vid~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~g-vI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~ 225 (438)
T PRK07721 147 RAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLN-VIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQP 225 (438)
T ss_pred hhhheeeeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCC
Confidence 456666 889999999999999999999999999987654 355554433 22110 00111111100 0012234
Q ss_pred HHHHHHHHH---HHHHc---cCCc-EEEEe-----------------CCC--CCccHHHHHHHH---------hcCC---
Q 038101 255 SEMQHKVLI---EAVEN---HMPQ-VIVID-----------------EIG--TKLEAMAASTIA---------QRGI--- 296 (660)
Q Consensus 255 gG~qqrv~I---A~aL~---~~P~-VLILD-----------------EPg--sgLD~~a~~~i~---------~~Gv--- 296 (660)
..+|-+... +.|.. ..-+ +|++| ||- .|+|+.....+. +.|.
T Consensus 226 ~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~ 305 (438)
T PRK07721 226 ALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITA 305 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeee
Confidence 555544332 22221 2334 55667 753 589998876551 2574
Q ss_pred --EEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 297 --QLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 297 --tVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||++.+|+++. .+||.+..+.+|.|..
T Consensus 306 ~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 306 FYTVLVDGDDMNE--PIADTVRGILDGHFVL 334 (438)
T ss_pred EEEEEEECCCCCc--hhhhhEEEecCEEEEE
Confidence 99999999984 7899999999999854
No 473
>PRK03918 chromosome segregation protein; Provisional
Probab=98.30 E-value=2.3e-06 Score=101.74 Aligned_cols=71 Identities=8% Similarity=0.091 Sum_probs=59.1
Q ss_pred ccCCCCCHHHHHH------HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCc
Q 038101 248 RRMQVPNSEMQHK------VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 248 rrl~vLSgG~qqr------v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dr 314 (660)
+.+..+|+|++++ ++++++++.+|+++|+|||+++||+..+..+ ...|.+||++||+..+. .+||.
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d~ 862 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAADY 862 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCCe
Confidence 4667899999994 5555678899999999999999999886665 34578999999999865 57999
Q ss_pred EEEEE
Q 038101 315 SLEML 319 (660)
Q Consensus 315 il~l~ 319 (660)
++.+.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 98887
No 474
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.27 E-value=3.5e-06 Score=84.40 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=79.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc---CCCCeEEE-EcCC-Ccccc---C---CCCC------------------C-
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLAN---DYKKRVMI-VDTS-SEIGG---N---GDIP------------------H- 241 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p---~~GkrV~~-Vdq~-~eIa~---~---~~ip------------------~- 241 (660)
.-++.|+|.||+||||||-.|+-...- ..++.+.. ++.+ +.+.. + ...+ .
T Consensus 37 apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De~ 116 (233)
T COG3910 37 APITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDEA 116 (233)
T ss_pred CceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHhh
Confidence 368999999999999999999754322 22222211 1111 11100 0 0000 0
Q ss_pred ---CCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh
Q 038101 242 ---PGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI 311 (660)
Q Consensus 242 ---~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i 311 (660)
.+.+ .+.+...|-|+--. .+..-..+.--+.|||||-++|.+.-+-.+ ++.|-++|++||..-+...=
T Consensus 117 ~~e~~~~-~~sLh~~SHGEsf~-~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP 194 (233)
T COG3910 117 DGEANYG-GRSLHHMSHGESFL-AIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIP 194 (233)
T ss_pred hhhcccC-CcchhhhccchHHH-HHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCC
Confidence 0000 12344556665433 333344577889999999999999865543 67899999999998765444
Q ss_pred cCcEEEEEcCeEEEE
Q 038101 312 MNPSLEMLIGGVQNV 326 (660)
Q Consensus 312 ~dril~l~~G~I~~V 326 (660)
.-.|+.+..+++..+
T Consensus 195 ~A~I~~~~~~g~~~~ 209 (233)
T COG3910 195 GAEIYEISESGIEER 209 (233)
T ss_pred CcEEEEEecCCcccc
Confidence 445677777766543
No 475
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.24 E-value=2.9e-06 Score=103.42 Aligned_cols=74 Identities=14% Similarity=0.027 Sum_probs=64.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHcc--------CCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENH--------MPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI 311 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~--------~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i 311 (660)
.+.+..||||++++++|+++++. +|++||+|||+++||+.....+ ...|.+|+++||...+.+.+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 36778999999999999999996 8999999999999999987665 46799999999988888877
Q ss_pred cCcEEEEEc
Q 038101 312 MNPSLEMLI 320 (660)
Q Consensus 312 ~dril~l~~ 320 (660)
...+.+...
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 777766654
No 476
>PRK04296 thymidine kinase; Provisional
Probab=98.24 E-value=2e-05 Score=78.03 Aligned_cols=123 Identities=16% Similarity=0.220 Sum_probs=68.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC--CccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS--SEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~--~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
|.++++.||+|+||||++..++..+.. .|++|.++... ...+......+.++... .....+...-.+. +.. ...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~-~~~~~~~~~~~~~-~~~-~~~ 77 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGKVVSRIGLSRE-AIPVSSDTDIFEL-IEE-EGE 77 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCcEecCCCCccc-ceEeCChHHHHHH-HHh-hCC
Confidence 678999999999999998877765543 47788777321 11111011112222110 0111111111111 111 345
Q ss_pred CCcEEEEeCCCCCccHHH----HHHHHhcCCEEEEEEcChh----------HHHHhcCcEEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMA----ASTIAQRGIQLVATAHGVT----------IENLIMNPSLEML 319 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a----~~~i~~~GvtVI~TtH~~~----------l~~~i~dril~l~ 319 (660)
++++|++||... ++... .+.+++.|++||++.++.+ ....++|.+..+.
T Consensus 78 ~~dvviIDEaq~-l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~ 140 (190)
T PRK04296 78 KIDCVLIDEAQF-LDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELK 140 (190)
T ss_pred CCCEEEEEcccc-CCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEee
Confidence 889999999954 44332 2333778999999998832 3334677776553
No 477
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.23 E-value=1.1e-06 Score=89.19 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc-----------cCCCCeEEEEcCCCccc----------c-CC--CCCC-C--CC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLA-----------NDYKKRVMIVDTSSEIG----------G-NG--DIPH-P--GI 244 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~-----------p~~GkrV~~Vdq~~eIa----------~-~~--~ip~-~--~L 244 (660)
|...+|+||+|+|||||+-.++-..+ +..+.+|.|+....... . .+ .+.. . .-
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 56789999999999999999975322 22345788886543110 0 00 0000 0 00
Q ss_pred CccccCCCCC-----HHHHHHHHHHHHHccCCcEEEEeCCCC------CccHHHHHHH--------HhcCCEEEEEEcCh
Q 038101 245 GNARRMQVPN-----SEMQHKVLIEAVENHMPQVIVIDEIGT------KLEAMAASTI--------AQRGIQLVATAHGV 305 (660)
Q Consensus 245 g~~rrl~vLS-----gG~qqrv~IA~aL~~~P~VLILDEPgs------gLD~~a~~~i--------~~~GvtVI~TtH~~ 305 (660)
+...++.... .-......+..+..++|++||+| |.+ ..|......+ .+.|++||+++|..
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 0000110000 01112223333556899999999 553 4677665443 35699999999986
Q ss_pred h
Q 038101 306 T 306 (660)
Q Consensus 306 ~ 306 (660)
.
T Consensus 160 K 160 (239)
T cd01125 160 K 160 (239)
T ss_pred c
Confidence 5
No 478
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.23 E-value=5e-06 Score=74.74 Aligned_cols=93 Identities=27% Similarity=0.424 Sum_probs=59.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC-CcE
Q 038101 195 LLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM-PQV 273 (660)
Q Consensus 195 ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~-P~V 273 (660)
++|.||||+||||+++.++..+ +..+..++....... ...+....-+-.+..+.... |.|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc----ccccccccccccccc---------------ccccccccccccccccccccccee
Confidence 5899999999999999999987 355666665433210 11223344445555555565 999
Q ss_pred EEEeCCCCCccHH----------HHHHH-------Hh--cCCEEEEEEcChh
Q 038101 274 IVIDEIGTKLEAM----------AASTI-------AQ--RGIQLVATAHGVT 306 (660)
Q Consensus 274 LILDEPgsgLD~~----------a~~~i-------~~--~GvtVI~TtH~~~ 306 (660)
|++||...-.... ....+ .. .++.+|++++..+
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD 113 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh
Confidence 9999997533332 12222 11 3578888988754
No 479
>PRK01156 chromosome segregation protein; Provisional
Probab=98.20 E-value=5.7e-06 Score=99.03 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=62.6
Q ss_pred ccCCCCCHHHHHHHHH------HHHHccCCcEEEEeCCCCCccHHHHHHH--------Hhc-C-CEEEEEEcChhHHHHh
Q 038101 248 RRMQVPNSEMQHKVLI------EAVENHMPQVIVIDEIGTKLEAMAASTI--------AQR-G-IQLVATAHGVTIENLI 311 (660)
Q Consensus 248 rrl~vLSgG~qqrv~I------A~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~-G-vtVI~TtH~~~l~~~i 311 (660)
..+..+|+|++++++| |++++.+|+++++||||++||+.....+ ... | .|||++||+..+.. +
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h
Confidence 3567899999999875 4888899999999999999999986654 122 3 48999999999874 7
Q ss_pred cCcEEEEE-cCeEEEE
Q 038101 312 MNPSLEML-IGGVQNV 326 (660)
Q Consensus 312 ~dril~l~-~G~I~~V 326 (660)
||+++.+. .|++..|
T Consensus 876 ~d~ii~~~~~~~~s~v 891 (895)
T PRK01156 876 ADVAYEVKKSSGSSKV 891 (895)
T ss_pred cCeEEEEEecCCeeEE
Confidence 99998887 4665443
No 480
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.11 E-value=7.3e-06 Score=90.31 Aligned_cols=100 Identities=18% Similarity=0.353 Sum_probs=61.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..+..++|.||||||||||++.+++.+.. .+..+... ++. . ..++ .+...-+-.+..|..
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~----~fi~i~~s-~l~------~------k~~g--e~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTA----TFIRVVGS-EFV------Q------KYLG--EGPRMVRDVFRLARE 236 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCC----CEEEEehH-HHH------H------Hhcc--hhHHHHHHHHHHHHh
Confidence 556788999999999999999999987532 22222111 110 0 0011 112233445667778
Q ss_pred cCCcEEEEeCCC----------CCccHHHHHHH-----------HhcCCEEEEEEcChhH
Q 038101 269 HMPQVIVIDEIG----------TKLEAMAASTI-----------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 269 ~~P~VLILDEPg----------sgLD~~a~~~i-----------~~~GvtVI~TtH~~~l 307 (660)
+.|.||++||+- ++.|....+.+ ...++.||++||..+.
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 899999999954 33444433332 1246789999987654
No 481
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=4.9e-06 Score=103.59 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=56.1
Q ss_pred CCCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCccHHHHHHHH------------hcCCEEEEEEcChhHHHHhc
Q 038101 251 QVPNSEMQH------KVLIEAVENHMPQVIVIDEIGTKLEAMAASTIA------------QRGIQLVATAHGVTIENLIM 312 (660)
Q Consensus 251 ~vLSgG~qq------rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~------------~~GvtVI~TtH~~~l~~~i~ 312 (660)
..+|+||+| |++||++++.+|.+|+|||||++||+.....+. ..|.+||++||+..++..+|
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 579999999 999999999999999999999999999876541 24899999999999998887
Q ss_pred C
Q 038101 313 N 313 (660)
Q Consensus 313 d 313 (660)
.
T Consensus 1278 ~ 1278 (1311)
T TIGR00606 1278 R 1278 (1311)
T ss_pred h
Confidence 4
No 482
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.06 E-value=3e-05 Score=79.69 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc--ccCCCCeEEEEcCCC-ccccCCC-CCCCCCCccccCCCCCHHHHHHHHHHHHH-
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL--ANDYKKRVMIVDTSS-EIGGNGD-IPHPGIGNARRMQVPNSEMQHKVLIEAVE- 267 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL--~p~~GkrV~~Vdq~~-eIa~~~~-ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL- 267 (660)
.+++|.|||.+||||+||.|+-.. +. .| .+|+... ++.-... +.+.+..+ .-...+|.-+.-...+..++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq-~G---~~VPA~~~~i~~~d~I~t~~~~~d-~~~~~~S~F~~E~~~~~~il~ 118 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQ-IG---CFVPAESAEIPIFDRIFTRIGDDD-SIESGLSTFMAEMKRLSSILR 118 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHT-TT-----BSSSEEEEE--SEEEEEES----SSTTSSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhh-cC---ceeeecccccccccEEEeeccccc-ccccccccHHHhHHHHHhhhh
Confidence 489999999999999999997432 21 12 2222211 1100000 00000000 01123443332222233332
Q ss_pred -ccCCcEEEEeCCCCCccHHHHHH--------HHh-cCCEEEEEEcChhHHHH
Q 038101 268 -NHMPQVIVIDEIGTKLEAMAAST--------IAQ-RGIQLVATAHGVTIENL 310 (660)
Q Consensus 268 -~~~P~VLILDEPgsgLD~~a~~~--------i~~-~GvtVI~TtH~~~l~~~ 310 (660)
+.+-.++|+||++.|=++..... +.+ .+..+|++||..++...
T Consensus 119 ~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 119 NATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp H--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred hcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence 35677999999998877765332 355 58999999999887554
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.02 E-value=5.7e-06 Score=80.93 Aligned_cols=117 Identities=25% Similarity=0.352 Sum_probs=57.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccC--------------CCCeEEE--EcC-CC---ccccCCCCCCCCCCccccCCCC
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLAND--------------YKKRVMI--VDT-SS---EIGGNGDIPHPGIGNARRMQVP 253 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~--------------~GkrV~~--Vdq-~~---eIa~~~~ip~~~Lg~~rrl~vL 253 (660)
.+.|.|++|+|||||++-++..+... .|.++|| ++- +. .++.........+|.+ .+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky---~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKY---FVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTC---EE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCE---EEc
Confidence 47899999999999999998887432 2344443 121 11 1111110111112211 000
Q ss_pred -CHHHHH-HHHHHHHHccCCcEEEEeCCCCC-ccH----HHHHHHHhcCCEEEEEEcCh---hHHHHhcCc
Q 038101 254 -NSEMQH-KVLIEAVENHMPQVIVIDEIGTK-LEA----MAASTIAQRGIQLVATAHGV---TIENLIMNP 314 (660)
Q Consensus 254 -SgG~qq-rv~IA~aL~~~P~VLILDEPgsg-LD~----~a~~~i~~~GvtVI~TtH~~---~l~~~i~dr 314 (660)
...++- .-.|..++ .++++||+||+|.- +-. .+...+.+.++.+|+|.|.. .+++.++++
T Consensus 78 ~e~fe~~~~~~L~~~~-~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~~l~~i~~~ 147 (168)
T PF03266_consen 78 LESFEEIGLPALRNAL-SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRSDNPFLEEIKRR 147 (168)
T ss_dssp HHHHHCCCCCCCHHHH-HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS--SCCHHHHHTT
T ss_pred HHHHHHHHHHHHHhhc-CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhC
Confidence 000000 01223334 79999999999963 332 23444567789999999977 256666654
No 484
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.02 E-value=1.7e-05 Score=77.67 Aligned_cols=109 Identities=31% Similarity=0.459 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccC--------------CCCeEEE--EcCC-Cccc--cCCCCCCCCCCccccCCCC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLAND--------------YKKRVMI--VDTS-SEIG--GNGDIPHPGIGNARRMQVP 253 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~--------------~GkrV~~--Vdq~-~eIa--~~~~ip~~~Lg~~rrl~vL 253 (660)
-.++|.|+||+|||||+.-|+..+... .|+++|| +|-. .+-+ ...+.....+|. ..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk---Y~V~ 82 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK---YGVN 82 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce---EEee
Confidence 467999999999999999999877654 1334443 2211 1110 001111222222 1121
Q ss_pred CHHH--HHHHHHHHHHccCCcEEEEeCCCC-CccHH----HHHHHHhcCCEEEEEEcCh
Q 038101 254 NSEM--QHKVLIEAVENHMPQVIVIDEIGT-KLEAM----AASTIAQRGIQLVATAHGV 305 (660)
Q Consensus 254 SgG~--qqrv~IA~aL~~~P~VLILDEPgs-gLD~~----a~~~i~~~GvtVI~TtH~~ 305 (660)
-.+. -.--+|.+|+ ...|+||+||++- .|-.. +.+++.+++.-+|+|.|-.
T Consensus 83 v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 83 VEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred HHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecc
Confidence 1111 1122334444 3479999999995 23222 2444577888899999966
No 485
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=6.2e-06 Score=91.84 Aligned_cols=124 Identities=17% Similarity=0.253 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccc-CCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLAN-DYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p-~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
..+.|.||+|+|||+|+++|+..+.. ..+.+|.|++...-+... . ..+..-+ .. .+......++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~--------~--~~~~~~~--~~---~f~~~~~~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL--------V--DSMKEGK--LN---EFREKYRKKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH--------H--HHHhccc--HH---HHHHHHHhcC
Confidence 36899999999999999999986543 235678888653211000 0 0000000 00 1111122479
Q ss_pred cEEEEeCCCCCccHHHH-HH-------HHhcCCEEEEEE-cChhHHHHhcCcEEE-EEcCeEEEEecCch
Q 038101 272 QVIVIDEIGTKLEAMAA-ST-------IAQRGIQLVATA-HGVTIENLIMNPSLE-MLIGGVQNVTLGDE 331 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~-~~-------i~~~GvtVI~Tt-H~~~l~~~i~dril~-l~~G~I~~V~lgd~ 331 (660)
++|++||+...++.... .. +.+.|.++|+++ |.......+.+++.. +..|-+..+...|.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 99999999976654322 22 245677888876 777766666666553 33454555544444
No 486
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.01 E-value=1.6e-05 Score=89.55 Aligned_cols=87 Identities=25% Similarity=0.419 Sum_probs=53.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeEEEEcCCCc-cccCCCCCC----CCCCccccCCCCCHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-KRVMIVDTSSE-IGGNGDIPH----PGIGNARRMQVPNSEMQHKVL 262 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-krV~~Vdq~~e-Ia~~~~ip~----~~Lg~~rrl~vLSgG~qqrv~ 262 (660)
+..|.+++|+|||||||||++..|++.+....| ++|+++++... +++...+.. .++. +.... ......
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp----v~~~~--~~~Dl~ 326 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP----VHAVK--DAADLR 326 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC----eeccC--CchhHH
Confidence 567899999999999999999999998865554 58998876542 221110000 0110 00000 111233
Q ss_pred HHHHHccCCcEEEEeCCCC
Q 038101 263 IEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgs 281 (660)
++..-..+.+++++|.+|.
T Consensus 327 ~aL~~L~d~d~VLIDTaGr 345 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGM 345 (484)
T ss_pred HHHHhccCCCeEEeCCCCc
Confidence 3445556778999999884
No 487
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.01 E-value=4.6e-05 Score=79.90 Aligned_cols=207 Identities=16% Similarity=0.221 Sum_probs=123.8
Q ss_pred hhhCCCccEEecCCCCcccccCcCCHHHHHHHHhh------hcCCCCCccceee---cc--ceeeccccCce---EEEEe
Q 038101 104 VMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQ------VGDFAVDNRAGIS---RT--LHRISAIRNRK---GAIIG 169 (660)
Q Consensus 104 ~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~------lg~fs~d~R~GI~---rt--lhRIs~irn~~---LeI~~ 169 (660)
-+-.|=||..+..+.-.-+.+.+.|-|+...++.. ...|...+...+. +. -.|++++..+. +.++-
T Consensus 23 fIt~g~Ppsmkv~g~~tpi~q~pLt~eq~~~i~~~iM~~~q~~eF~~~~EcNfai~~~~~gRfRvnAf~qr~~~g~VlRr 102 (375)
T COG5008 23 FITAGFPPSMKVDGKLTPITQEPLTGEQTMAIAFSIMSAKQREEFEETHECNFAISARDIGRFRVNAFYQRGLAGLVLRR 102 (375)
T ss_pred EEEcCCCcceeecCceeecCCCCCCHHHHHHHHHHHhhHHHHHHHHhcccceEEEEcCCCceEEeehhhhcCcchhhhhh
Confidence 34567787777665445566778887776554432 2346555444333 11 25666543221 22222
Q ss_pred EEEEECcc-ccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc
Q 038101 170 LTCRVGRA-VSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA 247 (660)
Q Consensus 170 Lt~rygr~-v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~ 247 (660)
++-++... ..+-.++|+++ +.+...+.|+|+.||||||.|-.+.|.-....-..|..+.+.-|+-.. ++..+-.-
T Consensus 103 I~~~IPt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~---h~~CIvTQ 179 (375)
T COG5008 103 IETKIPTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHK---HKRCIVTQ 179 (375)
T ss_pred hhccCCcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhc---ccceeEEe
Confidence 33332221 11223567777 788889999999999999999999887543322245555554443100 00000000
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSL 316 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~i~dril 316 (660)
|.+++-. .-..+++.-.+...||||++.|+-+-..-.-+..+++.|.-+++|-|..+- +.--++|+
T Consensus 180 REvGvDT--esw~~AlkNtlRQapDvI~IGEvRsretMeyAi~fAeTGHLcmaTLHAN~a-nQaleRIi 245 (375)
T COG5008 180 REVGVDT--ESWEVALKNTLRQAPDVILIGEVRSRETMEYAIQFAETGHLCMATLHANNA-NQALERII 245 (375)
T ss_pred eeeccch--HHHHHHHHHHHhcCCCeEEEeecccHhHHHHHHHHHhcCceEEEEeccCCc-hHHHHHHH
Confidence 1122111 334588888999999999999999877777777889999999999998763 33334443
No 488
>PRK00064 recF recombination protein F; Reviewed
Probab=98.00 E-value=1.8e-05 Score=86.01 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=61.2
Q ss_pred cCCCCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhc--C
Q 038101 249 RMQVPNSEMQHKVLIEAVEN---------HMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIM--N 313 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~---------~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~--d 313 (660)
....+|.|||+++.+++.++ ..|+||++|||+++||+..+..+ .+.+.++++|+|+.+.....+ .
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccC
Confidence 44678999999999999885 78999999999999999988776 233679999999987665554 3
Q ss_pred cEEEEEcCeE
Q 038101 314 PSLEMLIGGV 323 (660)
Q Consensus 314 ril~l~~G~I 323 (660)
+++.+..|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 5777877775
No 489
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.97 E-value=2.5e-05 Score=87.15 Aligned_cols=102 Identities=21% Similarity=0.384 Sum_probs=62.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..+..++|.||||+|||||+++|++.+.. .+..+..+ ++. ...++ .+...-+-.+..|..
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~----~fi~V~~s-eL~------~k~~G--------e~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSA----TFLRVVGS-ELI------QKYLG--------DGPKLVRELFRVAEE 274 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCC----CEEEEecc-hhh------hhhcc--------hHHHHHHHHHHHHHh
Confidence 556788999999999999999999997642 22222221 110 00001 111223445566777
Q ss_pred cCCcEEEEeCCCC----------CccHHHHHHH-----------HhcCCEEEEEEcChhHHH
Q 038101 269 HMPQVIVIDEIGT----------KLEAMAASTI-----------AQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 269 ~~P~VLILDEPgs----------gLD~~a~~~i-----------~~~GvtVI~TtH~~~l~~ 309 (660)
+.|.||+|||+-+ +.+....+.+ ...++.||++||..+.++
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD 336 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD 336 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh
Confidence 8999999999632 2233222222 134788999999876654
No 490
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.97 E-value=1.5e-05 Score=96.19 Aligned_cols=70 Identities=7% Similarity=0.146 Sum_probs=58.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
..+..+|+|++++++|+++++ ..|+++|+|||+++||+.....+ ...+.++|++||+..+. .+||+++.
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~~~ 1163 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQLYG 1163 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhHee
Confidence 466789999999999999984 67799999999999999887665 22468999999999976 46999864
Q ss_pred E
Q 038101 318 M 318 (660)
Q Consensus 318 l 318 (660)
+
T Consensus 1164 ~ 1164 (1179)
T TIGR02168 1164 V 1164 (1179)
T ss_pred e
Confidence 4
No 491
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=1.6e-05 Score=87.12 Aligned_cols=97 Identities=26% Similarity=0.463 Sum_probs=59.1
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeEEEEcCCCc-cccCCCCC----CCCCCccccCC-CCCHHHHHH
Q 038101 188 LVQDGASLLFIGPPGVGKTTIIREIARVLANDYK-KRVMIVDTSSE-IGGNGDIP----HPGIGNARRMQ-VPNSEMQHK 260 (660)
Q Consensus 188 lI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-krV~~Vdq~~e-Ia~~~~ip----~~~Lg~~rrl~-vLSgG~qqr 260 (660)
++..|++++|+||||+||||++..|+..+....| ++|+++..... +++...+. ..++ .+. ..+++.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv----~~~~~~~~~~--- 205 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV----PVHAVKDGGD--- 205 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC----ceEecCCccc---
Confidence 3788999999999999999999999987643334 57888876542 22111000 0011 111 111111
Q ss_pred HHHHHHHccCCcEEEEeCCCC-CccHHHHHHH
Q 038101 261 VLIEAVENHMPQVIVIDEIGT-KLEAMAASTI 291 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgs-gLD~~a~~~i 291 (660)
+..+.....+.+++|+|++|. ..|....+++
T Consensus 206 l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~L 237 (374)
T PRK14722 206 LQLALAELRNKHMVLIDTIGMSQRDRTVSDQI 237 (374)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCcccHHHHHHH
Confidence 122334456889999999995 4666654444
No 492
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.93 E-value=7.4e-05 Score=89.45 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=64.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc--cccCCCCeEEEEcCCC-ccccCCCCCCCCCCcccc-CCCCCHHHHHHHHHHHHHc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV--LANDYKKRVMIVDTSS-EIGGNGDIPHPGIGNARR-MQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl--L~p~~GkrV~~Vdq~~-eIa~~~~ip~~~Lg~~rr-l~vLSgG~qqrv~IA~aL~ 268 (660)
.+++|.|||.+||||+||.++=. ++. .| .+|+... +++....+ ...+|.... ....|.-|-....++.++.
T Consensus 593 ~~~iITGPNmgGKSt~lrqvali~imAq-~G---~~VPA~~a~i~~~D~I-ftrig~~d~i~~g~STF~~Em~e~a~IL~ 667 (840)
T TIGR01070 593 RMLLITGPNMGGKSTYMRQTALIALLAQ-IG---SFVPAESAELPLFDRI-FTRIGASDDLASGRSTFMVEMTEAANILH 667 (840)
T ss_pred cEEEEECCCCCCchHHHHHHHHHHHHHh-cC---CCccchheEeccccEE-EEecCcccchhcCcchHHHHHHHHHHHHh
Confidence 58999999999999999998632 121 12 1222221 11110000 001121111 1233444444444555544
Q ss_pred --cCCcEEEEeCCCCCccHH---HH-----HHHHh-cCCEEEEEEcChhHHHH
Q 038101 269 --HMPQVIVIDEIGTKLEAM---AA-----STIAQ-RGIQLVATAHGVTIENL 310 (660)
Q Consensus 269 --~~P~VLILDEPgsgLD~~---a~-----~~i~~-~GvtVI~TtH~~~l~~~ 310 (660)
..+.++|+||+|.|-++. +. +.+.+ .|..++++||..++...
T Consensus 668 ~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l 720 (840)
T TIGR01070 668 NATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTAL 720 (840)
T ss_pred hCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHH
Confidence 678999999998765544 31 22345 78999999999877543
No 493
>PRK06893 DNA replication initiation factor; Validated
Probab=97.93 E-value=3.6e-05 Score=78.25 Aligned_cols=87 Identities=10% Similarity=0.230 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
-++.|.||+|+|||||+++|+..+... +.++.|++.... ...... .+ ....+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~------------------~~~~~~-----~~--~~~~~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKS------------------QYFSPA-----VL--ENLEQQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHh------------------hhhhHH-----HH--hhcccCC
Confidence 467999999999999999999876432 456666654210 000000 01 1234789
Q ss_pred EEEEeCCCCCc-cHHHHHH-------HHhcCCEEEEEEcCh
Q 038101 273 VIVIDEIGTKL-EAMAAST-------IAQRGIQLVATAHGV 305 (660)
Q Consensus 273 VLILDEPgsgL-D~~a~~~-------i~~~GvtVI~TtH~~ 305 (660)
+|++||+.... +...... +.+.|.++|++|++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999998643 3332222 245677776666554
No 494
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.91 E-value=8.4e-05 Score=74.62 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=30.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHh-ccccCCCCeEEEEcC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIAR-VLANDYKKRVMIVDT 229 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iag-lL~p~~GkrV~~Vdq 229 (660)
+.+|++++|.|+||+|||||+..++. .+. .|..+.|+..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEc
Confidence 78899999999999999999987653 222 3667777764
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.90 E-value=1.7e-05 Score=78.01 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=52.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc------------CCCCCCC-C------------CCc--
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG------------NGDIPHP-G------------IGN-- 246 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~------------~~~ip~~-~------------Lg~-- 246 (660)
+++|+||+|||||||++.|++++. +..+.++........ ....|.. . .+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 77 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---NPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCE
Confidence 479999999999999999999982 234555544321100 0111110 0 000
Q ss_pred cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
..+....+.+++++..+ ..+.++++|+|.++...++.....
T Consensus 78 ~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~~~~ 118 (198)
T cd02023 78 EIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKELRDL 118 (198)
T ss_pred eccccccccCcccCCce---ecCCCCEEEEechhhccchhHHhh
Confidence 01222334444433322 457789999999998887644433
No 496
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.89 E-value=7.6e-06 Score=80.58 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=48.2
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHH
Q 038101 188 LVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 188 lI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL 267 (660)
+++.+.+++|.||+|+|||+|+.+|+..+.. .|..|.|+.....+..... ....-+. .+ .+. .
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~~L~~~l~~----------~~~~~~~---~~-~~~--~ 105 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITASDLLDELKQ----------SRSDGSY---EE-LLK--R 105 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEHHHHHHHHHC----------CHCCTTH---CH-HHH--H
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeecCceeccccc----------cccccch---hh-hcC--c
Confidence 4788999999999999999999999876654 6788988876543321100 0001111 11 122 2
Q ss_pred ccCCcEEEEeCCCCC
Q 038101 268 NHMPQVIVIDEIGTK 282 (660)
Q Consensus 268 ~~~P~VLILDEPgsg 282 (660)
..++++|||||.+..
T Consensus 106 l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LKRVDLLILDDLGYE 120 (178)
T ss_dssp HHTSSCEEEETCTSS
T ss_pred cccccEeccccccee
Confidence 348999999999974
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.89 E-value=3.7e-05 Score=86.18 Aligned_cols=128 Identities=23% Similarity=0.310 Sum_probs=75.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCC-CCCCCCCCc--cccCCCCCHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNG-DIPHPGIGN--ARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~-~ip~~~Lg~--~rrl~vLSgG~qqrv~IA~ 265 (660)
+.+|+.++|.|+||+|||||+..++..+... |.+|.|++......... .....++.. ...+...+.. -.+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~----~I~~~ 165 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWE----QICAN 165 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHH----HHHHH
Confidence 6778999999999999999999998876654 45788886543211000 000001110 0011112221 12233
Q ss_pred HHccCCcEEEEeCCCCCc----c-----HHHHHH--------HHhcCCEEEEEEcChhH--------HHHhcCcEEEEEc
Q 038101 266 VENHMPQVIVIDEIGTKL----E-----AMAAST--------IAQRGIQLVATAHGVTI--------ENLIMNPSLEMLI 320 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgL----D-----~~a~~~--------i~~~GvtVI~TtH~~~l--------~~~i~dril~l~~ 320 (660)
+.-.+|+++|+|.+.+-. + ....++ +++.|+|+++++|.... ++.++|.++.+..
T Consensus 166 i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~ 245 (454)
T TIGR00416 166 IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 245 (454)
T ss_pred HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEec
Confidence 445689999999987421 1 111111 26789999999995432 4566777777764
Q ss_pred C
Q 038101 321 G 321 (660)
Q Consensus 321 G 321 (660)
+
T Consensus 246 ~ 246 (454)
T TIGR00416 246 D 246 (454)
T ss_pred c
Confidence 4
No 498
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.88 E-value=2.2e-05 Score=85.92 Aligned_cols=127 Identities=23% Similarity=0.343 Sum_probs=74.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCC-CCCCCCCC--ccccCCCCCHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNG-DIPHPGIG--NARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~-~ip~~~Lg--~~rrl~vLSgG~qqrv~IA~ 265 (660)
+.+|++++|.|+||+|||||+..++..+... +.+|.|++......... .....++. ...-....+-. -.+..
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le----~I~~~ 153 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLE----DILAS 153 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHH----HHHHH
Confidence 6778999999999999999999999877654 45788886532111000 00001110 00001111111 12334
Q ss_pred HHccCCcEEEEeCCCC----Ccc-----HHHHH--------HHHhcCCEEEEEEcChh--------HHHHhcCcEEEEEc
Q 038101 266 VENHMPQVIVIDEIGT----KLE-----AMAAS--------TIAQRGIQLVATAHGVT--------IENLIMNPSLEMLI 320 (660)
Q Consensus 266 aL~~~P~VLILDEPgs----gLD-----~~a~~--------~i~~~GvtVI~TtH~~~--------l~~~i~dril~l~~ 320 (660)
+...+|++||+|++.+ .+| ....+ .+++.|+++|++.|-.. .++.++|-++.+..
T Consensus 154 i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~ 233 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEG 233 (372)
T ss_pred HHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEc
Confidence 4557999999999853 222 11111 12678999999998432 34556777766654
No 499
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.87 E-value=5.3e-05 Score=90.46 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=45.3
Q ss_pred HccCCcEEEEeCCCCCc-cHHHHHHH-------HhcCCEEEEEEcChhHHH---------HhcCcEEEEEcCeE
Q 038101 267 ENHMPQVIVIDEIGTKL-EAMAASTI-------AQRGIQLVATAHGVTIEN---------LIMNPSLEMLIGGV 323 (660)
Q Consensus 267 L~~~P~VLILDEPgsgL-D~~a~~~i-------~~~GvtVI~TtH~~~l~~---------~i~dril~l~~G~I 323 (660)
+..+|.++++|||..+| |+..+..+ ++.|.++|++||+.+.+. ..|+..+.+.+|++
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 36799999999999999 67665543 567999999999998764 46777777777765
No 500
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.87 E-value=2.9e-05 Score=87.45 Aligned_cols=68 Identities=29% Similarity=0.469 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..++|.||||||||||++.|++.. +..+..++...... ...-.+..+-+-.+..|..+.|.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~----~~~~~~i~~~~~~~---------------~~~g~~~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEA----GVPFFSISGSDFVE---------------MFVGVGASRVRDLFEQAKKNAPC 149 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc----CCCeeeccHHHHHH---------------HHhcccHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999864 23333333221110 00011223445567778889999
Q ss_pred EEEEeCC
Q 038101 273 VIVIDEI 279 (660)
Q Consensus 273 VLILDEP 279 (660)
||++||+
T Consensus 150 Il~iDEi 156 (495)
T TIGR01241 150 IIFIDEI 156 (495)
T ss_pred EEEEech
Confidence 9999999
Done!