Query 038101
Match_columns 660
No_of_seqs 484 out of 3176
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 9.6E-30 3.3E-34 271.7 20.5 159 164-327 4-221 (359)
2 3rlf_A Maltose/maltodextrin im 100.0 1.4E-29 4.8E-34 272.3 19.6 159 164-327 3-216 (381)
3 3tui_C Methionine import ATP-b 100.0 5.8E-29 2E-33 266.3 20.1 165 160-325 20-244 (366)
4 2yyz_A Sugar ABC transporter, 100.0 1.1E-28 3.8E-33 263.4 20.8 159 164-327 3-216 (359)
5 3gfo_A Cobalt import ATP-bindi 100.0 4.8E-29 1.6E-33 257.0 16.5 162 162-327 5-226 (275)
6 2it1_A 362AA long hypothetical 100.0 1.3E-28 4.4E-33 263.2 19.6 159 164-327 3-216 (362)
7 1z47_A CYSA, putative ABC-tran 100.0 1.2E-28 4.2E-33 262.8 19.2 160 163-327 13-228 (355)
8 1v43_A Sugar-binding transport 100.0 1.2E-28 4.2E-33 264.2 19.2 159 164-327 11-224 (372)
9 4g1u_C Hemin import ATP-bindin 100.0 6.7E-29 2.3E-33 254.3 16.5 160 163-327 10-230 (266)
10 2pcj_A ABC transporter, lipopr 100.0 1.3E-28 4.4E-33 245.5 17.9 157 164-326 4-220 (224)
11 1b0u_A Histidine permease; ABC 100.0 2E-28 6.7E-33 250.0 19.7 160 162-326 4-234 (262)
12 3tif_A Uncharacterized ABC tra 100.0 2E-28 6.9E-33 246.0 18.5 160 165-326 2-226 (235)
13 1g29_1 MALK, maltose transport 100.0 3.1E-28 1.1E-32 260.9 20.7 159 164-327 3-222 (372)
14 2olj_A Amino acid ABC transpor 100.0 4.3E-28 1.5E-32 248.3 20.5 158 164-326 24-240 (263)
15 1vpl_A ABC transporter, ATP-bi 100.0 3.2E-28 1.1E-32 248.2 19.3 159 163-326 14-227 (256)
16 1ji0_A ABC transporter; ATP bi 100.0 3.1E-28 1.1E-32 245.2 19.0 160 162-326 4-220 (240)
17 1oxx_K GLCV, glucose, ABC tran 100.0 2.1E-28 7.3E-33 260.5 18.1 159 164-327 3-223 (353)
18 1g6h_A High-affinity branched- 100.0 3.2E-28 1.1E-32 247.3 16.4 158 164-326 7-234 (257)
19 3d31_A Sulfate/molybdate ABC t 100.0 6.1E-28 2.1E-32 256.7 18.2 157 165-327 2-210 (348)
20 2nq2_C Hypothetical ABC transp 100.0 1.3E-27 4.4E-32 243.0 17.2 156 164-325 4-208 (253)
21 2onk_A Molybdate/tungstate ABC 99.9 2.4E-27 8.2E-32 239.5 16.9 154 165-326 2-208 (240)
22 2yz2_A Putative ABC transporte 99.9 7E-27 2.4E-31 238.8 19.7 160 164-325 2-218 (266)
23 2ixe_A Antigen peptide transpo 99.9 7.3E-27 2.5E-31 239.7 17.8 160 164-326 16-237 (271)
24 2ff7_A Alpha-hemolysin translo 99.9 4.4E-27 1.5E-31 238.1 15.7 157 164-326 7-224 (247)
25 2ihy_A ABC transporter, ATP-bi 99.9 3.4E-27 1.2E-31 243.4 14.2 161 161-326 18-244 (279)
26 2pze_A Cystic fibrosis transme 99.9 1.4E-26 4.7E-31 231.6 16.2 159 164-326 6-210 (229)
27 2cbz_A Multidrug resistance-as 99.9 6.6E-27 2.3E-31 235.3 13.9 159 164-326 3-209 (237)
28 2d2e_A SUFC protein; ABC-ATPas 99.9 6.2E-27 2.1E-31 237.0 13.5 158 164-326 3-225 (250)
29 2zu0_C Probable ATP-dependent 99.9 2.5E-26 8.5E-31 235.1 18.0 161 162-327 18-247 (267)
30 3nh6_A ATP-binding cassette SU 99.9 1.1E-26 3.7E-31 243.1 13.8 160 163-327 52-270 (306)
31 1mv5_A LMRA, multidrug resista 99.9 5.5E-27 1.9E-31 236.2 11.0 155 165-325 2-217 (243)
32 2pjz_A Hypothetical protein ST 99.9 3.9E-26 1.3E-30 233.8 14.5 158 165-326 2-207 (263)
33 2ghi_A Transport protein; mult 99.9 8.4E-26 2.9E-30 230.3 16.6 160 163-326 16-234 (260)
34 3gd7_A Fusion complex of cysti 99.9 9.7E-27 3.3E-31 250.9 10.0 158 163-327 18-235 (390)
35 2qi9_C Vitamin B12 import ATP- 99.9 7.9E-26 2.7E-30 229.7 16.1 153 164-326 4-214 (249)
36 1sgw_A Putative ABC transporte 99.9 6.5E-26 2.2E-30 225.7 9.0 148 163-316 9-204 (214)
37 2bbs_A Cystic fibrosis transme 99.9 1.8E-24 6.1E-29 224.5 12.9 155 164-326 40-239 (290)
38 3b5x_A Lipid A export ATP-bind 99.9 7E-24 2.4E-28 237.8 18.2 160 163-326 340-559 (582)
39 3qf4_A ABC transporter, ATP-bi 99.9 4E-24 1.4E-28 240.4 13.4 161 163-327 340-559 (587)
40 4a82_A Cystic fibrosis transme 99.9 9.4E-24 3.2E-28 236.7 15.5 161 163-327 338-557 (578)
41 3b60_A Lipid A export ATP-bind 99.9 2E-23 6.8E-28 234.1 17.9 161 163-327 340-560 (582)
42 3qf4_B Uncharacterized ABC tra 99.9 7.2E-24 2.4E-28 238.7 14.1 158 164-326 354-570 (598)
43 3ozx_A RNAse L inhibitor; ATP 99.9 1.6E-23 5.4E-28 234.1 16.7 152 163-320 268-461 (538)
44 1yqt_A RNAse L inhibitor; ATP- 99.9 4.8E-23 1.6E-27 230.0 19.4 152 163-320 286-477 (538)
45 2yl4_A ATP-binding cassette SU 99.9 4E-23 1.4E-27 232.3 18.5 160 165-327 342-563 (595)
46 1yqt_A RNAse L inhibitor; ATP- 99.9 1.1E-23 3.8E-28 235.0 13.0 150 168-321 25-234 (538)
47 3bk7_A ABC transporter ATP-bin 99.9 5.2E-23 1.8E-27 232.9 16.8 152 163-320 356-547 (607)
48 3bk7_A ABC transporter ATP-bin 99.9 9.4E-23 3.2E-27 230.8 17.0 150 168-321 95-304 (607)
49 3j16_B RLI1P; ribosome recycli 99.9 1.4E-22 4.7E-27 229.5 13.1 137 189-325 375-550 (608)
50 3j16_B RLI1P; ribosome recycli 99.9 1.5E-21 5.2E-26 221.0 16.3 149 169-322 82-298 (608)
51 3ozx_A RNAse L inhibitor; ATP 99.9 1.6E-21 5.4E-26 217.9 14.7 149 169-321 4-213 (538)
52 3g5u_A MCG1178, multidrug resi 99.9 1.8E-21 6.1E-26 236.2 16.0 162 163-327 1029-1251(1284)
53 2iw3_A Elongation factor 3A; a 99.9 1.6E-21 5.4E-26 230.2 14.3 156 164-324 435-624 (986)
54 2iw3_A Elongation factor 3A; a 99.8 7.3E-22 2.5E-26 233.0 8.8 77 248-324 897-977 (986)
55 3g5u_A MCG1178, multidrug resi 99.8 4E-21 1.4E-25 233.2 15.3 162 163-327 386-606 (1284)
56 4f4c_A Multidrug resistance pr 99.8 5.7E-21 1.9E-25 232.4 15.2 170 164-346 1076-1306(1321)
57 3ux8_A Excinuclease ABC, A sub 99.8 9.5E-21 3.3E-25 215.6 15.2 79 248-327 198-291 (670)
58 4f4c_A Multidrug resistance pr 99.8 2.4E-20 8.3E-25 226.9 16.2 164 164-330 415-637 (1321)
59 3ux8_A Excinuclease ABC, A sub 99.8 7.7E-19 2.6E-23 199.9 15.9 79 248-327 539-633 (670)
60 4gp7_A Metallophosphoesterase; 99.7 1.8E-18 6.3E-23 164.1 8.0 121 189-310 6-164 (171)
61 2vf7_A UVRA2, excinuclease ABC 99.7 8.6E-18 2.9E-22 196.3 15.0 79 248-327 726-820 (842)
62 4aby_A DNA repair protein RECN 99.7 2E-17 6.8E-22 175.9 13.3 72 253-325 296-379 (415)
63 2npi_A Protein CLP1; CLP1-PCF1 99.7 1.2E-18 4.1E-23 191.4 2.1 135 189-324 135-329 (460)
64 3pih_A Uvrabc system protein A 99.7 7.8E-17 2.7E-21 189.7 17.4 78 249-327 802-895 (916)
65 1ye8_A Protein THEP1, hypothet 99.7 1.2E-17 4.1E-22 161.1 8.6 128 194-326 2-160 (178)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 2E-17 6.8E-22 176.1 10.4 75 249-324 276-363 (365)
67 2r6f_A Excinuclease ABC subuni 99.7 1.2E-16 4.1E-21 188.1 16.6 79 248-327 841-935 (972)
68 2ygr_A Uvrabc system protein A 99.7 1.4E-16 4.8E-21 187.9 16.9 77 249-326 860-952 (993)
69 2pt7_A CAG-ALFA; ATPase, prote 99.6 4.3E-17 1.5E-21 171.5 4.2 214 97-322 42-291 (330)
70 3b85_A Phosphate starvation-in 99.6 1.2E-18 4.1E-23 172.4 -7.3 123 183-310 14-163 (208)
71 3jvv_A Twitching mobility prot 99.6 1.8E-16 6.1E-21 168.9 8.3 208 101-319 16-244 (356)
72 1tf7_A KAIC; homohexamer, hexa 99.6 1.6E-15 5.3E-20 168.1 6.6 132 189-322 278-444 (525)
73 1e69_A Chromosome segregation 99.5 4.2E-14 1.4E-18 147.2 15.0 77 249-326 216-304 (322)
74 1cr0_A DNA primase/helicase; R 99.5 2E-14 7E-19 146.5 12.1 139 183-322 23-236 (296)
75 2ehv_A Hypothetical protein PH 99.5 6.4E-15 2.2E-19 144.1 7.7 134 184-319 22-206 (251)
76 2eyu_A Twitching motility prot 99.5 7.9E-15 2.7E-19 149.6 8.4 124 183-318 15-145 (261)
77 2o8b_B DNA mismatch repair pro 99.5 8.4E-15 2.9E-19 174.5 8.2 152 163-324 749-930 (1022)
78 3thx_A DNA mismatch repair pro 99.5 2.3E-14 7.9E-19 169.2 10.3 134 183-326 650-805 (934)
79 3qkt_A DNA double-strand break 99.5 1.4E-13 4.9E-18 144.3 13.2 70 249-319 245-327 (339)
80 4a74_A DNA repair and recombin 99.5 4E-14 1.4E-18 136.8 8.0 136 187-322 20-201 (231)
81 2w0m_A SSO2452; RECA, SSPF, un 99.5 4.6E-14 1.6E-18 135.8 7.6 132 189-321 20-192 (235)
82 3b9q_A Chloroplast SRP recepto 99.5 5.1E-14 1.8E-18 146.6 8.2 129 189-322 97-283 (302)
83 3thx_B DNA mismatch repair pro 99.4 1.1E-13 3.8E-18 163.1 9.1 118 183-309 661-800 (918)
84 1tq4_A IIGP1, interferon-induc 99.4 2.2E-15 7.4E-20 163.7 -5.5 123 194-316 71-248 (413)
85 1znw_A Guanylate kinase, GMP k 99.4 1.3E-15 4.3E-20 148.2 -6.6 136 183-318 10-201 (207)
86 2og2_A Putative signal recogni 99.4 2.8E-13 9.5E-18 144.7 9.3 129 189-322 154-340 (359)
87 1ewq_A DNA mismatch repair pro 99.4 3.9E-13 1.3E-17 156.0 9.8 117 183-309 567-702 (765)
88 2v9p_A Replication protein E1; 99.3 9.7E-16 3.3E-20 160.4 -14.1 135 166-325 103-257 (305)
89 3aez_A Pantothenate kinase; tr 99.3 3E-14 1E-18 149.1 -4.1 97 189-285 87-209 (312)
90 2cvh_A DNA repair and recombin 99.3 1.5E-12 5.1E-17 125.1 8.0 129 189-321 17-185 (220)
91 2ewv_A Twitching motility prot 99.3 9.6E-13 3.3E-17 140.6 7.4 206 99-318 26-256 (372)
92 1tf7_A KAIC; homohexamer, hexa 99.3 8.8E-13 3E-17 146.1 5.7 135 183-320 26-209 (525)
93 3sop_A Neuronal-specific septi 99.3 3.2E-13 1.1E-17 138.3 1.4 110 194-307 4-152 (270)
94 1wb9_A DNA mismatch repair pro 99.3 1.7E-12 5.9E-17 151.3 6.3 136 183-323 596-747 (800)
95 2obl_A ESCN; ATPase, hydrolase 99.3 1.1E-13 3.9E-18 146.8 -4.5 145 164-325 45-246 (347)
96 1f2t_B RAD50 ABC-ATPase; DNA d 99.3 1.3E-11 4.4E-16 116.3 9.7 71 248-319 53-136 (148)
97 2i3b_A HCR-ntpase, human cance 99.2 1E-12 3.5E-17 128.1 1.2 129 192-327 1-169 (189)
98 1n0w_A DNA repair protein RAD5 99.2 1.5E-11 5.1E-16 119.9 8.9 122 188-309 20-178 (243)
99 1nlf_A Regulatory protein REPA 99.2 8.3E-12 2.8E-16 126.5 7.3 118 189-309 27-185 (279)
100 3ec2_A DNA replication protein 99.2 1E-12 3.5E-17 124.1 0.5 102 189-306 35-144 (180)
101 1pzn_A RAD51, DNA repair and r 99.2 1.9E-11 6.5E-16 129.4 7.6 120 189-308 128-289 (349)
102 2jeo_A Uridine-cytidine kinase 99.2 3.2E-12 1.1E-16 127.4 0.9 129 183-315 13-176 (245)
103 2dpy_A FLII, flagellum-specifi 99.2 5.3E-13 1.8E-17 145.8 -5.5 146 164-325 131-335 (438)
104 2kjq_A DNAA-related protein; s 99.1 5.6E-11 1.9E-15 111.2 7.3 82 191-304 35-124 (149)
105 1z6g_A Guanylate kinase; struc 99.1 4.6E-13 1.6E-17 132.0 -7.5 124 189-315 20-204 (218)
106 2cpm_A Sperm-associated antige 99.1 8.4E-11 2.9E-15 103.7 7.2 69 547-615 3-74 (94)
107 2oap_1 GSPE-2, type II secreti 99.1 2.4E-10 8.4E-15 127.1 12.6 205 98-309 142-371 (511)
108 3pih_A Uvrabc system protein A 99.0 2.6E-10 8.7E-15 134.7 9.7 79 248-327 460-553 (916)
109 2qnr_A Septin-2, protein NEDD5 99.0 8.7E-12 3E-16 129.3 -3.6 126 168-306 2-168 (301)
110 1pui_A ENGB, probable GTP-bind 99.0 5.3E-11 1.8E-15 113.4 1.7 122 164-291 3-189 (210)
111 1rj9_A FTSY, signal recognitio 99.0 8.1E-10 2.8E-14 115.2 10.6 114 191-306 101-259 (304)
112 2gza_A Type IV secretion syste 99.0 1.7E-10 5.7E-15 122.7 3.2 127 189-321 172-302 (361)
113 2ygr_A Uvrabc system protein A 99.0 1.2E-09 4.1E-14 129.4 10.3 79 248-327 517-610 (993)
114 2r6f_A Excinuclease ABC subuni 98.9 1.1E-09 3.7E-14 129.5 9.5 82 247-329 499-595 (972)
115 4ad8_A DNA repair protein RECN 98.9 9.5E-10 3.2E-14 121.6 8.0 73 248-321 392-473 (517)
116 2qag_C Septin-7; cell cycle, c 98.9 1.1E-10 3.7E-15 127.1 -0.3 134 164-306 11-178 (418)
117 2vf7_A UVRA2, excinuclease ABC 98.9 1.9E-09 6.3E-14 126.4 8.3 81 247-328 374-469 (842)
118 3asz_A Uridine kinase; cytidin 98.9 3.6E-12 1.2E-16 122.8 -13.2 112 190-305 4-161 (211)
119 3kta_B Chromosome segregation 98.8 1.4E-08 4.9E-13 97.9 11.0 75 248-323 60-146 (173)
120 1s96_A Guanylate kinase, GMP k 98.8 1.6E-08 5.3E-13 100.6 10.8 113 189-310 13-145 (219)
121 1p9r_A General secretion pathw 98.8 1.7E-09 5.7E-14 117.7 4.0 114 184-306 158-272 (418)
122 3szr_A Interferon-induced GTP- 98.8 1.3E-09 4.3E-14 123.5 2.8 144 165-308 11-199 (608)
123 3lda_A DNA repair protein RAD5 98.8 6.2E-09 2.1E-13 112.6 7.7 117 189-305 175-328 (400)
124 2px0_A Flagellar biosynthesis 98.8 1.2E-08 4.1E-13 105.8 8.3 127 190-324 103-245 (296)
125 2dr3_A UPF0273 protein PH0284; 98.7 1.7E-07 5.7E-12 91.2 14.4 131 188-319 19-195 (247)
126 1sxj_E Activator 1 40 kDa subu 98.7 2.5E-08 8.6E-13 103.0 8.2 38 268-306 132-175 (354)
127 1lw7_A Transcriptional regulat 98.7 1.8E-09 6.3E-14 114.0 -0.4 124 189-315 165-338 (365)
128 2o5v_A DNA replication and rep 98.7 3.6E-08 1.2E-12 105.3 8.7 71 252-326 265-348 (359)
129 3e70_C DPA, signal recognition 98.7 5.3E-08 1.8E-12 102.6 9.9 131 190-322 127-305 (328)
130 3auy_A DNA double-strand break 98.6 5.7E-08 2E-12 103.0 8.9 74 249-323 277-364 (371)
131 1htw_A HI0065; nucleotide-bind 98.6 4.3E-09 1.5E-13 99.8 -1.1 48 169-222 12-62 (158)
132 1vma_A Cell division protein F 98.6 2.9E-08 9.9E-13 103.7 4.6 89 189-281 101-197 (306)
133 2zr9_A Protein RECA, recombina 98.6 2E-07 7E-12 98.8 10.7 114 189-306 58-199 (349)
134 1w1w_A Structural maintenance 98.5 1.3E-07 4.6E-12 101.8 8.4 71 248-319 329-410 (430)
135 1ls1_A Signal recognition part 98.5 1.1E-07 3.9E-12 98.3 6.6 100 191-291 97-202 (295)
136 2ce7_A Cell division protein F 98.5 3.3E-07 1.1E-11 101.3 10.2 97 193-308 50-167 (476)
137 2r6a_A DNAB helicase, replicat 98.4 2.3E-07 7.9E-12 101.0 8.0 134 189-322 200-400 (454)
138 2qag_B Septin-6, protein NEDD5 98.4 3.9E-08 1.3E-12 107.4 1.5 131 166-303 18-217 (427)
139 2yhs_A FTSY, cell division pro 98.4 3.3E-07 1.1E-11 101.9 8.7 39 189-228 290-328 (503)
140 3b9p_A CG5977-PA, isoform A; A 98.4 2.6E-06 8.8E-11 86.0 13.3 75 190-283 52-126 (297)
141 1fnn_A CDC6P, cell division co 98.3 1E-06 3.5E-11 91.1 8.8 117 192-311 42-175 (389)
142 1udx_A The GTP-binding protein 98.3 2.4E-07 8.1E-12 100.8 3.1 113 189-306 154-310 (416)
143 1odf_A YGR205W, hypothetical 3 98.3 3.3E-08 1.1E-12 102.3 -3.8 96 191-286 30-168 (290)
144 3hr8_A Protein RECA; alpha and 98.2 3.3E-06 1.1E-10 90.2 9.6 114 189-304 58-197 (356)
145 3c8u_A Fructokinase; YP_612366 98.2 6.2E-07 2.1E-11 86.9 3.6 41 189-230 19-59 (208)
146 3h4m_A Proteasome-activating n 98.2 4.5E-06 1.5E-10 83.6 9.0 74 189-281 48-121 (285)
147 2xau_A PRE-mRNA-splicing facto 98.1 7.3E-07 2.5E-11 103.7 3.6 130 184-313 101-260 (773)
148 3tr0_A Guanylate kinase, GMP k 98.1 1.4E-06 4.8E-11 82.7 4.0 29 189-217 4-32 (205)
149 2qm8_A GTPase/ATPase; G protei 98.1 1.5E-07 5E-12 99.2 -3.2 57 166-228 31-90 (337)
150 2b8t_A Thymidine kinase; deoxy 98.1 1E-05 3.4E-10 81.1 10.2 108 189-304 9-125 (223)
151 2qby_A CDC6 homolog 1, cell di 98.1 1.2E-06 3.9E-11 90.1 3.3 117 191-309 44-177 (386)
152 2rcn_A Probable GTPase ENGC; Y 98.1 1.8E-06 6E-11 92.4 4.7 32 189-220 212-244 (358)
153 1sq5_A Pantothenate kinase; P- 98.1 2.1E-07 7.4E-12 96.3 -2.4 39 190-229 78-118 (308)
154 2x8a_A Nuclear valosin-contain 98.1 6.3E-06 2.1E-10 84.1 8.4 79 183-282 34-115 (274)
155 3k1j_A LON protease, ATP-depen 98.1 1.4E-06 4.6E-11 98.3 3.5 38 183-220 48-88 (604)
156 4b4t_L 26S protease subunit RP 98.0 1.8E-05 6E-10 86.8 11.5 74 189-281 212-285 (437)
157 1lv7_A FTSH; alpha/beta domain 98.0 2.7E-05 9.1E-10 77.2 11.6 69 192-279 45-113 (257)
158 2z4s_A Chromosomal replication 98.0 1.5E-06 5E-11 94.6 2.6 99 192-305 130-237 (440)
159 2r8r_A Sensor protein; KDPD, P 98.0 2.4E-06 8.3E-11 86.2 3.5 107 194-305 8-127 (228)
160 3cf0_A Transitional endoplasmi 98.0 6.5E-06 2.2E-10 84.4 6.7 73 189-280 46-118 (301)
161 3kl4_A SRP54, signal recogniti 98.0 5.5E-06 1.9E-10 90.6 6.4 108 191-304 96-223 (433)
162 1ypw_A Transitional endoplasmi 98.0 1E-05 3.6E-10 94.4 9.1 104 185-307 230-352 (806)
163 3a00_A Guanylate kinase, GMP k 98.0 2.4E-06 8.1E-11 81.3 2.9 33 192-224 1-33 (186)
164 1zp6_A Hypothetical protein AT 98.0 3.4E-06 1.2E-10 79.4 3.7 27 189-215 6-32 (191)
165 2ius_A DNA translocase FTSK; n 98.0 8.5E-06 2.9E-10 90.9 7.5 118 189-306 164-343 (512)
166 1ni3_A YCHF GTPase, YCHF GTP-b 98.0 1.3E-07 4.3E-12 102.3 -7.1 52 270-323 139-202 (392)
167 4b4t_K 26S protease regulatory 98.0 2.3E-05 8E-10 85.6 10.6 73 189-280 203-275 (428)
168 3uie_A Adenylyl-sulfate kinase 98.0 4E-06 1.4E-10 80.5 4.1 40 189-229 22-61 (200)
169 3nwj_A ATSK2; P loop, shikimat 97.9 1.9E-06 6.5E-11 87.5 1.6 48 164-216 17-72 (250)
170 4b4t_J 26S protease regulatory 97.9 2.5E-05 8.7E-10 84.8 10.2 74 189-281 179-252 (405)
171 3euj_A Chromosome partition pr 97.9 5.6E-06 1.9E-10 91.7 4.9 39 183-222 18-59 (483)
172 1l8q_A Chromosomal replication 97.9 5E-06 1.7E-10 85.4 4.2 96 192-304 37-140 (324)
173 3lnc_A Guanylate kinase, GMP k 97.9 4.1E-06 1.4E-10 82.1 2.9 29 189-217 24-53 (231)
174 1lvg_A Guanylate kinase, GMP k 97.9 4.5E-06 1.5E-10 80.7 2.8 28 190-217 2-29 (198)
175 2qz4_A Paraplegin; AAA+, SPG7, 97.9 3.3E-05 1.1E-09 75.9 9.1 73 190-281 37-109 (262)
176 3d8b_A Fidgetin-like protein 1 97.9 5.8E-05 2E-09 79.4 11.1 71 190-279 115-185 (357)
177 4a1f_A DNAB helicase, replicat 97.9 4.2E-05 1.4E-09 81.1 10.0 110 189-303 43-164 (338)
178 1ixz_A ATP-dependent metallopr 97.8 9.7E-06 3.3E-10 80.3 4.8 33 183-217 39-74 (254)
179 2e87_A Hypothetical protein PH 97.8 4.5E-05 1.5E-09 80.3 10.1 112 191-306 166-293 (357)
180 4b4t_H 26S protease regulatory 97.8 4.2E-05 1.4E-09 84.4 10.2 74 189-281 240-313 (467)
181 1qhl_A Protein (cell division 97.8 7.5E-07 2.6E-11 89.4 -3.3 52 160-222 5-57 (227)
182 2j41_A Guanylate kinase; GMP, 97.8 9.2E-06 3.1E-10 77.1 4.3 31 189-219 3-33 (207)
183 1jbk_A CLPB protein; beta barr 97.8 3.2E-05 1.1E-09 70.7 7.7 27 191-217 42-68 (195)
184 1zu4_A FTSY; GTPase, signal re 97.8 2.1E-05 7.3E-10 82.4 7.0 93 189-282 102-203 (320)
185 3bos_A Putative DNA replicatio 97.8 3E-05 1E-09 74.2 7.5 39 191-230 51-89 (242)
186 1u94_A RECA protein, recombina 97.8 4.5E-05 1.5E-09 81.2 9.4 116 189-306 60-201 (356)
187 1xwi_A SKD1 protein; VPS4B, AA 97.8 5.8E-05 2E-09 78.5 10.1 74 190-281 43-116 (322)
188 4b4t_I 26S protease regulatory 97.8 4.8E-05 1.6E-09 83.3 9.7 74 189-281 213-286 (437)
189 1iy2_A ATP-dependent metallopr 97.8 1.7E-05 5.7E-10 80.0 5.4 33 183-217 63-98 (278)
190 2z43_A DNA repair and recombin 97.8 1.6E-05 5.5E-10 82.7 5.4 118 189-306 104-259 (324)
191 1v5w_A DMC1, meiotic recombina 97.8 9E-05 3.1E-09 77.9 10.8 119 189-307 119-276 (343)
192 3kta_A Chromosome segregation 97.8 3E-05 1E-09 72.6 6.4 30 189-219 24-53 (182)
193 1kgd_A CASK, peripheral plasma 97.8 1.3E-05 4.5E-10 75.9 4.0 28 191-218 4-31 (180)
194 4b4t_M 26S protease regulatory 97.7 4.4E-05 1.5E-09 83.6 8.3 73 189-280 212-284 (434)
195 3eie_A Vacuolar protein sortin 97.7 6.3E-05 2.2E-09 77.7 8.5 72 191-281 50-121 (322)
196 2w58_A DNAI, primosome compone 97.7 3.5E-05 1.2E-09 73.3 6.0 36 193-229 55-90 (202)
197 3syl_A Protein CBBX; photosynt 97.7 0.00016 5.6E-09 72.9 11.0 28 191-218 66-93 (309)
198 4eun_A Thermoresistant glucoki 97.7 1.7E-05 5.8E-10 76.1 3.6 27 190-216 27-53 (200)
199 4fcw_A Chaperone protein CLPB; 97.7 5.6E-05 1.9E-09 76.3 7.4 36 193-229 48-83 (311)
200 2qp9_X Vacuolar protein sortin 97.7 9.9E-05 3.4E-09 77.8 9.1 73 190-281 82-154 (355)
201 3vfd_A Spastin; ATPase, microt 97.7 0.00022 7.5E-09 75.6 11.8 71 191-280 147-217 (389)
202 1d2n_A N-ethylmaleimide-sensit 97.7 8.8E-05 3E-09 74.2 8.3 71 192-280 64-134 (272)
203 1njg_A DNA polymerase III subu 97.6 6.9E-05 2.3E-09 70.7 6.8 26 193-218 46-71 (250)
204 3tau_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 75.0 4.3 29 190-218 6-34 (208)
205 2bdt_A BH3686; alpha-beta prot 97.6 2.3E-05 7.8E-10 74.0 3.0 24 192-215 2-25 (189)
206 2qgz_A Helicase loader, putati 97.6 1.2E-05 4.1E-10 83.4 1.1 39 192-230 152-190 (308)
207 1u0l_A Probable GTPase ENGC; p 97.6 2.9E-05 9.9E-10 80.1 3.6 34 189-222 166-199 (301)
208 1in4_A RUVB, holliday junction 97.6 2.7E-06 9.3E-11 88.6 -4.1 25 193-217 52-76 (334)
209 3cf2_A TER ATPase, transitiona 97.6 0.00016 5.4E-09 84.7 9.9 100 189-307 235-352 (806)
210 2zan_A Vacuolar protein sortin 97.6 0.00019 6.5E-09 78.0 9.9 73 191-281 166-238 (444)
211 3m6a_A ATP-dependent protease 97.6 4.9E-05 1.7E-09 84.9 5.3 28 191-218 107-134 (543)
212 1kag_A SKI, shikimate kinase I 97.5 3.7E-05 1.3E-09 71.1 3.4 27 191-217 3-29 (173)
213 2bbw_A Adenylate kinase 4, AK4 97.5 3.7E-05 1.3E-09 76.1 3.6 30 190-219 25-57 (246)
214 1xp8_A RECA protein, recombina 97.5 0.00022 7.5E-09 76.2 9.6 114 189-306 71-212 (366)
215 1knq_A Gluconate kinase; ALFA/ 97.5 4.3E-05 1.5E-09 71.1 3.4 27 190-216 6-32 (175)
216 1sxj_D Activator 1 41 kDa subu 97.5 0.00014 4.9E-09 74.3 7.6 29 189-217 53-83 (353)
217 3hu3_A Transitional endoplasmi 97.5 0.0002 6.8E-09 79.3 8.8 71 190-279 236-306 (489)
218 3bh0_A DNAB-like replicative h 97.5 0.0002 6.9E-09 74.3 8.3 111 189-304 65-190 (315)
219 3n70_A Transport activator; si 97.5 0.00023 7.8E-09 65.1 7.7 89 189-304 21-115 (145)
220 3io5_A Recombination and repai 97.5 0.00017 5.7E-09 76.5 7.6 115 189-306 26-173 (333)
221 3t15_A Ribulose bisphosphate c 97.5 7.9E-05 2.7E-09 76.4 4.9 69 192-281 36-110 (293)
222 4e22_A Cytidylate kinase; P-lo 97.4 4E-05 1.4E-09 76.8 2.5 31 185-215 20-50 (252)
223 1w1w_A Structural maintenance 97.4 4.9E-05 1.7E-09 81.9 3.3 31 189-219 23-53 (430)
224 3cr8_A Sulfate adenylyltranfer 97.4 5.6E-05 1.9E-09 85.0 3.9 43 189-231 366-408 (552)
225 2v1u_A Cell division control p 97.4 5.4E-05 1.8E-09 77.8 3.3 40 190-229 42-86 (387)
226 3vaa_A Shikimate kinase, SK; s 97.4 7.3E-05 2.5E-09 71.6 3.6 33 184-216 14-49 (199)
227 2q6t_A DNAB replication FORK h 97.4 0.00048 1.6E-08 74.7 10.4 111 189-303 197-318 (444)
228 1rz3_A Hypothetical protein rb 97.4 9.1E-05 3.1E-09 71.3 4.3 39 189-228 19-57 (201)
229 2r62_A Cell division protease 97.4 2E-05 6.8E-10 78.3 -0.4 25 192-216 44-68 (268)
230 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00013 4.5E-09 81.1 6.0 24 194-217 66-89 (499)
231 1t9h_A YLOQ, probable GTPase E 97.4 3.1E-05 1.1E-09 81.0 0.9 33 189-221 170-202 (307)
232 2p65_A Hypothetical protein PF 97.4 7.5E-05 2.6E-09 68.4 3.2 27 192-218 43-69 (187)
233 2chg_A Replication factor C sm 97.4 0.00071 2.4E-08 63.1 9.9 25 193-217 39-63 (226)
234 1xx6_A Thymidine kinase; NESG, 97.4 0.00073 2.5E-08 65.9 10.2 120 190-318 6-141 (191)
235 2vp4_A Deoxynucleoside kinase; 97.4 9.7E-05 3.3E-09 72.7 3.9 27 189-215 17-43 (230)
236 2qt1_A Nicotinamide riboside k 97.4 0.00012 4E-09 70.2 4.4 39 189-232 18-56 (207)
237 2yv5_A YJEQ protein; hydrolase 97.4 0.00011 3.8E-09 76.0 4.4 33 189-222 162-194 (302)
238 3dm5_A SRP54, signal recogniti 97.3 0.00058 2E-08 75.0 10.2 94 192-291 100-204 (443)
239 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.0003 1E-08 74.6 7.3 37 189-229 120-156 (331)
240 2orw_A Thymidine kinase; TMTK, 97.3 0.00014 4.9E-09 69.9 4.2 107 191-306 2-114 (184)
241 2f1r_A Molybdopterin-guanine d 97.3 8.2E-05 2.8E-09 71.3 2.3 34 193-227 3-36 (171)
242 2pez_A Bifunctional 3'-phospho 97.3 0.00016 5.3E-09 67.8 4.2 37 191-228 4-40 (179)
243 2i1q_A DNA repair and recombin 97.2 0.00018 6.2E-09 74.1 4.2 44 189-232 95-153 (322)
244 3tqc_A Pantothenate kinase; bi 97.2 0.0002 6.7E-09 75.4 4.5 37 194-230 94-131 (321)
245 3llm_A ATP-dependent RNA helic 97.2 0.0005 1.7E-08 67.6 7.1 98 189-288 73-195 (235)
246 2zts_A Putative uncharacterize 97.2 0.0011 3.9E-08 64.0 9.2 42 189-230 27-68 (251)
247 3ney_A 55 kDa erythrocyte memb 97.2 0.0002 6.8E-09 70.5 3.8 29 189-217 16-44 (197)
248 2wji_A Ferrous iron transport 97.2 0.0033 1.1E-07 57.5 11.9 23 194-216 5-27 (165)
249 1m7g_A Adenylylsulfate kinase; 97.2 0.00018 6.1E-09 69.5 3.3 40 189-228 22-61 (211)
250 3pvs_A Replication-associated 97.1 0.00099 3.4E-08 72.8 9.4 32 186-217 42-75 (447)
251 2o5v_A DNA replication and rep 97.1 0.00027 9.2E-09 75.4 4.7 27 189-216 24-50 (359)
252 2dy1_A Elongation factor G; tr 97.1 0.0014 4.7E-08 75.1 10.6 114 189-307 6-138 (665)
253 1svm_A Large T antigen; AAA+ f 97.1 0.0002 6.9E-09 76.9 3.4 34 183-216 157-193 (377)
254 3cmu_A Protein RECA, recombina 97.1 0.00081 2.8E-08 85.2 9.3 87 189-280 1424-1515(2050)
255 3lxx_A GTPase IMAP family memb 97.1 0.0032 1.1E-07 61.6 11.5 25 194-218 31-55 (239)
256 1cke_A CK, MSSA, protein (cyti 97.1 0.00026 8.9E-09 68.2 3.6 25 192-216 5-29 (227)
257 2yvu_A Probable adenylyl-sulfa 97.1 0.00034 1.2E-08 65.8 4.3 39 189-228 10-48 (186)
258 3co5_A Putative two-component 97.1 0.00042 1.5E-08 63.3 4.7 28 189-216 24-51 (143)
259 1ypw_A Transitional endoplasmi 97.0 0.0001 3.6E-09 86.0 0.4 73 189-280 508-580 (806)
260 1j8m_F SRP54, signal recogniti 97.0 0.0012 4.2E-08 68.3 8.3 90 192-282 98-192 (297)
261 3t34_A Dynamin-related protein 97.0 0.0022 7.5E-08 67.3 10.2 22 194-215 36-57 (360)
262 1nij_A Hypothetical protein YJ 97.0 0.00028 9.5E-09 73.3 3.3 24 193-216 5-28 (318)
263 3cmw_A Protein RECA, recombina 97.0 0.0019 6.6E-08 80.8 11.2 111 189-303 729-867 (1706)
264 2c9o_A RUVB-like 1; hexameric 97.0 0.00053 1.8E-08 74.5 5.5 73 191-281 62-137 (456)
265 1q57_A DNA primase/helicase; d 97.0 0.0026 8.9E-08 69.8 10.9 42 189-230 239-280 (503)
266 2qby_B CDC6 homolog 3, cell di 97.0 0.001 3.5E-08 68.7 7.4 37 192-228 45-88 (384)
267 3pfi_A Holliday junction ATP-d 97.0 0.0025 8.6E-08 65.3 10.2 24 193-216 56-79 (338)
268 3gku_A Probable RNA-binding pr 97.0 0.00039 1.3E-08 70.0 4.0 57 558-615 153-210 (225)
269 1um8_A ATP-dependent CLP prote 97.0 0.0022 7.4E-08 67.3 9.8 35 191-229 71-105 (376)
270 1oix_A RAS-related protein RAB 97.0 0.00039 1.3E-08 65.7 3.7 25 194-218 31-55 (191)
271 1sxj_C Activator 1 40 kDa subu 97.0 0.00023 7.9E-09 73.7 2.2 31 189-219 41-73 (340)
272 2qor_A Guanylate kinase; phosp 96.9 0.00038 1.3E-08 66.9 3.4 29 189-217 9-37 (204)
273 1ofh_A ATP-dependent HSL prote 96.9 0.00064 2.2E-08 68.0 5.2 34 192-229 50-83 (310)
274 2www_A Methylmalonic aciduria 96.9 0.00046 1.6E-08 72.9 4.2 36 192-228 74-109 (349)
275 2p67_A LAO/AO transport system 96.9 0.00046 1.6E-08 72.4 4.1 46 183-229 44-92 (341)
276 1jjv_A Dephospho-COA kinase; P 96.9 0.00042 1.4E-08 66.1 3.4 21 194-214 4-24 (206)
277 1qvr_A CLPB protein; coiled co 96.9 0.002 6.8E-08 75.5 9.5 102 192-306 191-310 (854)
278 3cmw_A Protein RECA, recombina 96.9 0.0021 7.2E-08 80.5 10.2 114 189-304 380-519 (1706)
279 2f9l_A RAB11B, member RAS onco 96.9 0.00051 1.8E-08 64.9 3.5 24 194-217 7-30 (199)
280 2if2_A Dephospho-COA kinase; a 96.9 0.00051 1.8E-08 65.3 3.4 21 194-214 3-23 (204)
281 3u61_B DNA polymerase accessor 96.8 0.0056 1.9E-07 62.4 11.2 89 193-306 49-147 (324)
282 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0036 1.2E-07 71.9 10.7 103 190-305 205-325 (758)
283 1iqp_A RFCS; clamp loader, ext 96.8 0.0005 1.7E-08 69.2 3.1 30 188-217 40-71 (327)
284 2chq_A Replication factor C sm 96.8 0.00073 2.5E-08 67.7 4.0 31 187-217 31-63 (319)
285 1sxj_A Activator 1 95 kDa subu 96.8 0.0034 1.2E-07 69.2 9.7 35 192-230 77-111 (516)
286 1jr3_A DNA polymerase III subu 96.8 0.0011 3.8E-08 68.2 5.4 26 193-218 39-64 (373)
287 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0046 1.6E-07 71.0 10.8 88 193-290 489-576 (758)
288 3cm0_A Adenylate kinase; ATP-b 96.7 0.0006 2.1E-08 63.6 2.9 26 191-216 3-28 (186)
289 3pxi_A Negative regulator of g 96.7 0.0032 1.1E-07 72.6 9.5 77 194-291 523-599 (758)
290 1hqc_A RUVB; extended AAA-ATPa 96.7 0.0036 1.2E-07 63.4 8.7 25 192-216 38-62 (324)
291 1qvr_A CLPB protein; coiled co 96.7 0.0018 6.3E-08 75.7 7.4 92 193-291 589-680 (854)
292 3kb2_A SPBC2 prophage-derived 96.7 0.00072 2.5E-08 61.8 3.1 23 194-216 3-25 (173)
293 3cf2_A TER ATPase, transitiona 96.7 0.0012 4.1E-08 77.3 5.4 73 190-281 509-581 (806)
294 4eaq_A DTMP kinase, thymidylat 96.7 0.0015 5.2E-08 64.7 5.3 36 189-226 23-58 (229)
295 1qhx_A CPT, protein (chloramph 96.7 0.001 3.5E-08 61.6 3.8 26 192-217 3-28 (178)
296 3t61_A Gluconokinase; PSI-biol 96.6 0.0007 2.4E-08 64.5 2.6 25 192-216 18-42 (202)
297 2j9r_A Thymidine kinase; TK1, 96.6 0.0034 1.2E-07 62.7 7.5 120 190-318 26-161 (214)
298 1sxj_B Activator 1 37 kDa subu 96.6 0.0023 7.7E-08 64.3 6.4 24 194-217 44-67 (323)
299 1np6_A Molybdopterin-guanine d 96.6 0.0012 4.1E-08 63.4 4.0 35 193-228 7-41 (174)
300 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.001 3.5E-08 61.8 3.4 25 192-216 23-47 (149)
301 3bgw_A DNAB-like replicative h 96.6 0.002 6.8E-08 70.4 6.2 110 189-303 194-318 (444)
302 3e1s_A Exodeoxyribonuclease V, 96.6 0.005 1.7E-07 69.4 9.3 37 191-228 203-239 (574)
303 3pxg_A Negative regulator of g 96.6 0.0024 8.4E-08 69.7 6.6 28 190-217 199-226 (468)
304 3lxw_A GTPase IMAP family memb 96.5 0.0051 1.7E-07 61.3 8.2 23 194-216 23-45 (247)
305 2rhm_A Putative kinase; P-loop 96.5 0.0012 4.1E-08 61.6 3.4 27 190-216 3-29 (193)
306 2gj8_A MNME, tRNA modification 96.5 0.0012 4.2E-08 61.2 3.3 26 191-216 3-28 (172)
307 3cmu_A Protein RECA, recombina 96.5 0.0059 2E-07 77.6 10.4 111 189-305 380-520 (2050)
308 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.5E-08 61.1 3.4 26 192-217 3-28 (192)
309 2v3c_C SRP54, signal recogniti 96.5 0.0017 5.8E-08 70.8 4.8 37 193-230 100-136 (432)
310 3lw7_A Adenylate kinase relate 96.5 0.0013 4.5E-08 59.4 3.3 19 194-212 3-21 (179)
311 2v54_A DTMP kinase, thymidylat 96.4 0.002 6.8E-08 60.8 4.1 26 191-216 3-28 (204)
312 1ly1_A Polynucleotide kinase; 96.4 0.0018 6E-08 59.6 3.5 22 193-214 3-24 (181)
313 2jaq_A Deoxyguanosine kinase; 96.4 0.0016 5.4E-08 61.2 3.2 24 194-217 2-25 (205)
314 2ffh_A Protein (FFH); SRP54, s 96.4 0.0022 7.7E-08 69.9 4.7 99 191-290 97-201 (425)
315 1nks_A Adenylate kinase; therm 96.4 0.0023 7.9E-08 59.3 4.1 34 194-228 3-36 (194)
316 1y63_A LMAJ004144AAA protein; 96.4 0.002 7E-08 60.8 3.8 26 190-215 8-33 (184)
317 3trf_A Shikimate kinase, SK; a 96.4 0.0018 6.1E-08 60.4 3.4 25 192-216 5-29 (185)
318 1g5t_A COB(I)alamin adenosyltr 96.3 0.0055 1.9E-07 60.4 6.9 127 192-320 28-179 (196)
319 1ojl_A Transcriptional regulat 96.3 0.006 2E-07 62.9 7.5 40 189-229 22-61 (304)
320 1xjc_A MOBB protein homolog; s 96.3 0.0022 7.6E-08 61.6 3.9 36 193-229 5-40 (169)
321 3iij_A Coilin-interacting nucl 96.3 0.0018 6E-08 60.5 3.1 27 190-216 9-35 (180)
322 1via_A Shikimate kinase; struc 96.3 0.0015 5.2E-08 60.7 2.6 23 194-216 6-28 (175)
323 1q3t_A Cytidylate kinase; nucl 96.3 0.0021 7E-08 63.2 3.6 27 190-216 14-40 (236)
324 2plr_A DTMP kinase, probable t 96.3 0.0021 7.2E-08 60.7 3.5 28 191-218 3-30 (213)
325 3ice_A Transcription terminati 96.3 0.00087 3E-08 72.9 0.9 51 164-218 133-200 (422)
326 2c95_A Adenylate kinase 1; tra 96.3 0.002 6.9E-08 60.3 3.3 28 189-216 6-33 (196)
327 2orv_A Thymidine kinase; TP4A 96.3 0.011 3.7E-07 59.9 8.8 107 190-306 17-127 (234)
328 2p5t_B PEZT; postsegregational 96.2 0.0015 5.3E-08 65.1 2.4 29 189-217 29-57 (253)
329 2wjg_A FEOB, ferrous iron tran 96.2 0.0024 8.3E-08 58.9 3.4 22 194-215 9-30 (188)
330 2wwf_A Thymidilate kinase, put 96.2 0.0026 8.7E-08 60.4 3.5 28 190-217 8-35 (212)
331 2zej_A Dardarin, leucine-rich 96.1 0.0021 7.3E-08 59.9 2.7 23 194-216 4-26 (184)
332 1tev_A UMP-CMP kinase; ploop, 96.1 0.0027 9.2E-08 59.0 3.3 25 192-216 3-27 (196)
333 4ag6_A VIRB4 ATPase, type IV s 96.1 0.0045 1.6E-07 65.4 5.4 42 191-233 34-75 (392)
334 1nn5_A Similar to deoxythymidy 96.1 0.0029 1E-07 60.0 3.5 28 190-217 7-34 (215)
335 2ga8_A Hypothetical 39.9 kDa p 96.1 0.002 6.9E-08 69.0 2.6 29 189-217 19-49 (359)
336 1vht_A Dephospho-COA kinase; s 96.0 0.0037 1.3E-07 60.2 3.8 23 192-214 4-26 (218)
337 2ze6_A Isopentenyl transferase 96.0 0.0032 1.1E-07 63.2 3.5 23 194-216 3-25 (253)
338 3qks_A DNA double-strand break 96.0 0.0029 1E-07 61.4 3.1 24 193-216 24-47 (203)
339 1aky_A Adenylate kinase; ATP:A 96.0 0.0035 1.2E-07 60.5 3.6 26 191-216 3-28 (220)
340 2bwj_A Adenylate kinase 5; pho 96.0 0.0033 1.1E-07 59.0 3.2 27 190-216 10-36 (199)
341 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.5E-08 61.9 1.1 34 194-228 2-35 (214)
342 2vli_A Antibiotic resistance p 96.0 0.0026 8.8E-08 59.0 2.4 26 191-216 4-29 (183)
343 4dcu_A GTP-binding protein ENG 95.9 0.0048 1.6E-07 67.0 4.6 23 193-215 24-46 (456)
344 1zuh_A Shikimate kinase; alpha 95.9 0.0037 1.3E-07 57.6 3.3 24 193-216 8-31 (168)
345 1ega_A Protein (GTP-binding pr 95.9 0.0028 9.7E-08 65.2 2.5 25 192-216 8-32 (301)
346 2cdn_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 58.9 3.6 25 192-216 20-44 (201)
347 1zd8_A GTP:AMP phosphotransfer 95.9 0.0043 1.5E-07 60.3 3.5 26 191-216 6-31 (227)
348 2r44_A Uncharacterized protein 95.8 0.002 6.8E-08 66.1 1.1 29 189-217 43-71 (331)
349 1uf9_A TT1252 protein; P-loop, 95.8 0.0051 1.7E-07 57.8 3.8 24 192-215 8-31 (203)
350 1w4r_A Thymidine kinase; type 95.8 0.009 3.1E-07 58.9 5.6 107 190-307 18-129 (195)
351 1yrb_A ATP(GTP)binding protein 95.8 0.0063 2.1E-07 59.8 4.5 38 192-231 14-51 (262)
352 2z0h_A DTMP kinase, thymidylat 95.8 0.0044 1.5E-07 58.0 3.1 33 194-227 2-34 (197)
353 2xxa_A Signal recognition part 95.8 0.0099 3.4E-07 64.8 6.3 94 192-290 100-204 (433)
354 3dl0_A Adenylate kinase; phosp 95.8 0.0047 1.6E-07 59.2 3.4 23 194-216 2-24 (216)
355 3fb4_A Adenylate kinase; psych 95.8 0.0048 1.6E-07 59.1 3.4 23 194-216 2-24 (216)
356 3ake_A Cytidylate kinase; CMP 95.8 0.0045 1.6E-07 58.4 3.1 23 194-216 4-26 (208)
357 1gvn_B Zeta; postsegregational 95.8 0.0043 1.5E-07 63.6 3.2 26 191-216 32-57 (287)
358 1qf9_A UMP/CMP kinase, protein 95.8 0.0044 1.5E-07 57.4 3.0 24 193-216 7-30 (194)
359 2pbr_A DTMP kinase, thymidylat 95.8 0.0047 1.6E-07 57.4 3.1 24 194-217 2-25 (195)
360 3pxi_A Negative regulator of g 95.7 0.01 3.6E-07 68.3 6.6 96 190-306 199-302 (758)
361 2iyv_A Shikimate kinase, SK; t 95.7 0.004 1.4E-07 58.1 2.6 24 193-216 3-26 (184)
362 1e6c_A Shikimate kinase; phosp 95.7 0.0041 1.4E-07 57.1 2.6 24 193-216 3-26 (173)
363 3p32_A Probable GTPase RV1496/ 95.7 0.0065 2.2E-07 63.9 4.3 38 192-230 79-116 (355)
364 3a8t_A Adenylate isopentenyltr 95.7 0.045 1.5E-06 58.2 10.7 26 191-216 39-64 (339)
365 1ukz_A Uridylate kinase; trans 95.7 0.0063 2.2E-07 57.7 3.7 25 192-216 15-39 (203)
366 1zak_A Adenylate kinase; ATP:A 95.6 0.0048 1.6E-07 59.7 2.8 25 192-216 5-29 (222)
367 2j37_W Signal recognition part 95.6 0.0078 2.7E-07 67.0 4.8 38 192-230 101-138 (504)
368 2pt5_A Shikimate kinase, SK; a 95.6 0.0058 2E-07 55.9 3.2 23 194-216 2-24 (168)
369 3r20_A Cytidylate kinase; stru 95.6 0.0054 1.9E-07 61.7 3.2 25 192-216 9-33 (233)
370 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0063 2.2E-07 61.0 3.7 38 191-229 3-40 (260)
371 3k53_A Ferrous iron transport 95.6 0.0057 1.9E-07 61.4 3.2 23 194-216 5-27 (271)
372 3iby_A Ferrous iron transport 95.6 0.025 8.6E-07 56.8 7.9 23 194-216 3-25 (256)
373 1kao_A RAP2A; GTP-binding prot 95.6 0.0073 2.5E-07 53.7 3.5 22 194-215 5-26 (167)
374 3e2i_A Thymidine kinase; Zn-bi 95.6 0.018 6E-07 57.9 6.6 106 190-305 26-138 (219)
375 2nzj_A GTP-binding protein REM 95.6 0.0062 2.1E-07 55.1 3.0 22 194-215 6-27 (175)
376 3iev_A GTP-binding protein ERA 95.6 0.055 1.9E-06 55.7 10.5 23 193-215 11-33 (308)
377 2ce2_X GTPase HRAS; signaling 95.5 0.007 2.4E-07 53.6 3.3 22 194-215 5-26 (166)
378 3uk6_A RUVB-like 2; hexameric 95.5 0.0059 2E-07 63.0 3.2 27 191-217 69-95 (368)
379 1z2a_A RAS-related protein RAB 95.5 0.0074 2.5E-07 54.0 3.4 22 194-215 7-28 (168)
380 2ged_A SR-beta, signal recogni 95.5 0.0074 2.5E-07 56.0 3.5 24 193-216 49-72 (193)
381 1u8z_A RAS-related protein RAL 95.5 0.0078 2.7E-07 53.6 3.4 22 194-215 6-27 (168)
382 2dyk_A GTP-binding protein; GT 95.5 0.008 2.7E-07 53.5 3.5 23 194-216 3-25 (161)
383 3umf_A Adenylate kinase; rossm 95.5 0.0077 2.6E-07 59.9 3.7 28 189-216 26-53 (217)
384 2erx_A GTP-binding protein DI- 95.5 0.0079 2.7E-07 53.9 3.4 22 194-215 5-26 (172)
385 1ex7_A Guanylate kinase; subst 95.5 0.0069 2.4E-07 58.8 3.2 24 194-217 3-26 (186)
386 3be4_A Adenylate kinase; malar 95.4 0.0069 2.4E-07 58.7 3.2 25 192-216 5-29 (217)
387 2iut_A DNA translocase FTSK; n 95.4 0.023 8E-07 64.2 7.7 54 189-242 211-268 (574)
388 3auy_A DNA double-strand break 95.4 0.013 4.6E-07 61.8 5.5 22 193-214 26-47 (371)
389 2wsm_A Hydrogenase expression/ 95.4 0.011 3.7E-07 56.4 4.4 35 193-229 31-65 (221)
390 1z0j_A RAB-22, RAS-related pro 95.4 0.0088 3E-07 53.6 3.5 23 194-216 8-30 (170)
391 3q72_A GTP-binding protein RAD 95.4 0.006 2.1E-07 54.8 2.3 22 194-215 4-25 (166)
392 1ek0_A Protein (GTP-binding pr 95.4 0.009 3.1E-07 53.4 3.4 23 194-216 5-27 (170)
393 2bjv_A PSP operon transcriptio 95.4 0.011 3.8E-07 58.6 4.4 41 189-230 26-66 (265)
394 1g16_A RAS-related protein SEC 95.4 0.008 2.7E-07 53.9 3.1 22 194-215 5-26 (170)
395 1z08_A RAS-related protein RAB 95.4 0.0085 2.9E-07 53.9 3.3 22 194-215 8-29 (170)
396 3q85_A GTP-binding protein REM 95.4 0.0078 2.7E-07 54.2 3.0 23 194-216 4-26 (169)
397 1c1y_A RAS-related protein RAP 95.3 0.0086 2.9E-07 53.5 3.2 22 194-215 5-26 (167)
398 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0094 3.2E-07 54.1 3.5 22 194-215 9-30 (177)
399 1ak2_A Adenylate kinase isoenz 95.3 0.0093 3.2E-07 58.4 3.7 27 190-216 14-40 (233)
400 3i8s_A Ferrous iron transport 95.3 0.035 1.2E-06 56.1 8.0 23 194-216 5-27 (274)
401 1a5t_A Delta prime, HOLB; zinc 95.3 0.06 2E-06 55.8 9.9 30 189-218 18-50 (334)
402 1ky3_A GTP-binding protein YPT 95.3 0.0099 3.4E-07 53.9 3.5 23 194-216 10-32 (182)
403 2qen_A Walker-type ATPase; unk 95.3 0.0058 2E-07 61.7 2.1 29 188-216 27-55 (350)
404 3sr0_A Adenylate kinase; phosp 95.3 0.0091 3.1E-07 58.6 3.4 23 194-216 2-24 (206)
405 2xb4_A Adenylate kinase; ATP-b 95.3 0.0093 3.2E-07 58.2 3.4 23 194-216 2-24 (223)
406 1r2q_A RAS-related protein RAB 95.3 0.0095 3.2E-07 53.3 3.2 22 194-215 8-29 (170)
407 3tw8_B RAS-related protein RAB 95.3 0.0075 2.6E-07 54.6 2.6 22 194-215 11-32 (181)
408 1e4v_A Adenylate kinase; trans 95.2 0.009 3.1E-07 57.5 3.2 23 194-216 2-24 (214)
409 3clv_A RAB5 protein, putative; 95.2 0.0095 3.3E-07 54.6 3.3 23 194-216 9-31 (208)
410 2lkc_A Translation initiation 95.2 0.012 4.1E-07 53.4 3.9 26 190-215 6-31 (178)
411 2fn4_A P23, RAS-related protei 95.2 0.01 3.5E-07 53.8 3.4 22 194-215 11-32 (181)
412 1w36_D RECD, exodeoxyribonucle 95.2 0.016 5.6E-07 65.4 5.7 39 191-229 163-204 (608)
413 3tlx_A Adenylate kinase 2; str 95.2 0.011 3.7E-07 58.8 3.8 27 190-216 27-53 (243)
414 3t1o_A Gliding protein MGLA; G 95.2 0.0097 3.3E-07 54.7 3.2 25 194-218 16-40 (198)
415 3hws_A ATP-dependent CLP prote 95.2 0.0087 3E-07 62.5 3.2 26 191-216 50-75 (363)
416 3bc1_A RAS-related protein RAB 95.2 0.011 3.7E-07 54.1 3.4 22 194-215 13-34 (195)
417 4dsu_A GTPase KRAS, isoform 2B 95.2 0.01 3.5E-07 54.3 3.3 23 194-216 6-28 (189)
418 4ad8_A DNA repair protein RECN 95.2 0.006 2.1E-07 67.3 1.9 27 189-216 58-84 (517)
419 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.0063 2.2E-07 67.6 2.1 29 189-217 38-66 (500)
420 2hxs_A RAB-26, RAS-related pro 95.1 0.011 3.7E-07 53.7 3.3 23 194-216 8-30 (178)
421 1svi_A GTP-binding protein YSX 95.1 0.0099 3.4E-07 55.1 3.0 24 192-215 23-46 (195)
422 1mky_A Probable GTP-binding pr 95.1 0.0094 3.2E-07 64.4 3.2 23 194-216 182-204 (439)
423 3crm_A TRNA delta(2)-isopenten 95.1 0.078 2.7E-06 55.9 10.1 24 193-216 6-29 (323)
424 2oil_A CATX-8, RAS-related pro 95.1 0.011 3.7E-07 55.0 3.2 23 194-216 27-49 (193)
425 1upt_A ARL1, ADP-ribosylation 95.1 0.012 4.2E-07 52.8 3.4 23 193-215 8-30 (171)
426 4dzz_A Plasmid partitioning pr 95.1 0.026 8.7E-07 53.1 5.7 101 194-302 3-106 (206)
427 3pqc_A Probable GTP-binding pr 95.1 0.011 3.7E-07 54.4 3.0 24 193-216 24-47 (195)
428 1r8s_A ADP-ribosylation factor 95.0 0.012 4.1E-07 52.7 3.2 22 194-215 2-23 (164)
429 1uj2_A Uridine-cytidine kinase 95.0 0.011 3.9E-07 58.5 3.4 39 193-231 23-65 (252)
430 2y8e_A RAB-protein 6, GH09086P 95.0 0.011 3.9E-07 53.3 3.1 22 194-215 16-37 (179)
431 2cxx_A Probable GTP-binding pr 95.0 0.011 3.6E-07 54.3 2.9 22 194-215 3-24 (190)
432 3a1s_A Iron(II) transport prot 95.0 0.13 4.5E-06 51.6 11.1 23 194-216 7-29 (258)
433 2a9k_A RAS-related protein RAL 95.0 0.013 4.4E-07 53.4 3.4 22 194-215 20-41 (187)
434 1fzq_A ADP-ribosylation factor 95.0 0.0089 3E-07 55.6 2.3 24 192-215 16-39 (181)
435 1z0f_A RAB14, member RAS oncog 95.0 0.013 4.5E-07 52.9 3.4 23 194-216 17-39 (179)
436 1nrj_B SR-beta, signal recogni 95.0 0.013 4.3E-07 55.7 3.4 24 193-216 13-36 (218)
437 1m2o_B GTP-binding protein SAR 95.0 0.013 4.4E-07 55.1 3.3 23 193-215 24-46 (190)
438 2efe_B Small GTP-binding prote 95.0 0.013 4.5E-07 53.3 3.3 22 194-215 14-35 (181)
439 2g6b_A RAS-related protein RAB 94.9 0.014 4.9E-07 53.0 3.4 23 194-216 12-34 (180)
440 2bme_A RAB4A, RAS-related prot 94.9 0.013 4.4E-07 53.7 3.1 23 194-216 12-34 (186)
441 3con_A GTPase NRAS; structural 94.9 0.015 5E-07 53.8 3.4 22 194-215 23-44 (190)
442 2ohf_A Protein OLA1, GTP-bindi 94.9 0.012 4.1E-07 63.7 3.2 31 185-215 15-45 (396)
443 3b1v_A Ferrous iron uptake tra 94.9 0.013 4.4E-07 59.7 3.3 23 194-216 5-27 (272)
444 1f6b_A SAR1; gtpases, N-termin 94.8 0.0091 3.1E-07 56.6 1.9 32 183-214 14-47 (198)
445 1ltq_A Polynucleotide kinase; 94.8 0.014 4.8E-07 58.8 3.4 23 193-215 3-25 (301)
446 2bov_A RAla, RAS-related prote 94.8 0.014 4.9E-07 54.3 3.2 22 194-215 16-37 (206)
447 1moz_A ARL1, ADP-ribosylation 94.8 0.0086 2.9E-07 54.8 1.6 24 191-214 17-40 (183)
448 1m7b_A RND3/RHOE small GTP-bin 94.8 0.014 4.8E-07 54.0 3.1 22 194-215 9-30 (184)
449 3tkl_A RAS-related protein RAB 94.8 0.015 5.1E-07 53.8 3.2 23 194-216 18-40 (196)
450 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.015 5.2E-07 53.0 3.2 22 194-215 7-28 (186)
451 1vg8_A RAS-related protein RAB 94.8 0.016 5.6E-07 54.1 3.5 23 194-216 10-32 (207)
452 2gf9_A RAS-related protein RAB 94.8 0.015 5.3E-07 53.9 3.2 23 194-216 24-46 (189)
453 3kkq_A RAS-related protein M-R 94.7 0.017 5.8E-07 52.9 3.4 22 194-215 20-41 (183)
454 2gf0_A GTP-binding protein DI- 94.7 0.015 5.2E-07 53.8 3.1 23 193-215 9-31 (199)
455 2qtf_A Protein HFLX, GTP-bindi 94.7 0.013 4.5E-07 62.2 3.0 24 194-217 181-204 (364)
456 4edh_A DTMP kinase, thymidylat 94.7 0.024 8.3E-07 55.8 4.7 36 191-227 5-40 (213)
457 3d3q_A TRNA delta(2)-isopenten 94.7 0.1 3.4E-06 55.4 9.7 24 193-216 8-31 (340)
458 3ihw_A Centg3; RAS, centaurin, 94.7 0.017 5.7E-07 54.1 3.3 22 194-215 22-43 (184)
459 3bwd_D RAC-like GTP-binding pr 94.6 0.017 5.9E-07 52.5 3.2 22 194-215 10-31 (182)
460 3t5g_A GTP-binding protein RHE 94.6 0.018 6.2E-07 52.6 3.3 21 194-214 8-28 (181)
461 2fg5_A RAB-22B, RAS-related pr 94.6 0.018 6.2E-07 53.7 3.4 23 194-216 25-47 (192)
462 1zbd_A Rabphilin-3A; G protein 94.6 0.017 5.8E-07 54.1 3.1 23 194-216 10-32 (203)
463 2hf9_A Probable hydrogenase ni 94.6 0.024 8.2E-07 54.2 4.3 34 193-228 39-72 (226)
464 1ksh_A ARF-like protein 2; sma 94.6 0.017 5.8E-07 53.2 3.1 26 191-216 17-42 (186)
465 1tue_A Replication protein E1; 94.6 0.015 5.1E-07 58.1 2.8 28 189-216 55-82 (212)
466 2cjw_A GTP-binding protein GEM 94.6 0.017 6E-07 54.4 3.2 22 194-215 8-29 (192)
467 1x3s_A RAS-related protein RAB 94.6 0.02 6.7E-07 52.8 3.4 23 194-216 17-39 (195)
468 3dz8_A RAS-related protein RAB 94.6 0.017 6E-07 53.7 3.1 23 194-216 25-47 (191)
469 3oes_A GTPase rhebl1; small GT 94.5 0.018 6E-07 54.2 3.1 24 193-216 25-48 (201)
470 2a5j_A RAS-related protein RAB 94.5 0.019 6.5E-07 53.4 3.2 22 194-215 23-44 (191)
471 2iwr_A Centaurin gamma 1; ANK 94.5 0.015 5.1E-07 53.0 2.4 22 194-215 9-30 (178)
472 1z06_A RAS-related protein RAB 94.5 0.021 7.3E-07 52.9 3.5 22 194-215 22-43 (189)
473 2grj_A Dephospho-COA kinase; T 94.5 0.02 6.7E-07 55.6 3.4 24 193-216 13-36 (192)
474 2atv_A RERG, RAS-like estrogen 94.5 0.02 6.7E-07 53.6 3.3 23 193-215 29-51 (196)
475 3reg_A RHO-like small GTPase; 94.5 0.02 6.7E-07 53.4 3.2 23 194-216 25-47 (194)
476 2bcg_Y Protein YP2, GTP-bindin 94.5 0.019 6.3E-07 54.1 3.1 23 194-216 10-32 (206)
477 3cph_A RAS-related protein SEC 94.5 0.019 6.7E-07 53.8 3.2 23 193-215 21-43 (213)
478 1zd9_A ADP-ribosylation factor 94.5 0.021 7.3E-07 53.1 3.4 23 193-215 23-45 (188)
479 2f6r_A COA synthase, bifunctio 94.5 0.019 6.4E-07 58.5 3.3 22 193-214 76-97 (281)
480 2h92_A Cytidylate kinase; ross 94.5 0.018 6.3E-07 55.1 3.1 25 192-216 3-27 (219)
481 3exa_A TRNA delta(2)-isopenten 94.5 0.15 5.2E-06 53.8 10.2 25 192-216 3-27 (322)
482 1g41_A Heat shock protein HSLU 94.4 0.017 6E-07 63.3 3.2 25 193-217 51-75 (444)
483 3cbq_A GTP-binding protein REM 94.4 0.014 4.7E-07 55.3 1.9 22 194-215 25-46 (195)
484 1zj6_A ADP-ribosylation factor 94.4 0.022 7.4E-07 52.8 3.2 23 192-214 16-38 (187)
485 3eph_A TRNA isopentenyltransfe 94.4 0.13 4.4E-06 56.0 9.7 25 193-217 3-27 (409)
486 2p5s_A RAS and EF-hand domain 94.4 0.023 7.9E-07 53.3 3.4 24 193-216 29-52 (199)
487 1sky_E F1-ATPase, F1-ATP synth 94.4 0.02 6.7E-07 63.5 3.3 35 184-218 141-177 (473)
488 1c9k_A COBU, adenosylcobinamid 94.3 0.062 2.1E-06 52.2 6.4 61 194-280 1-61 (180)
489 2xtp_A GTPase IMAP family memb 94.3 0.022 7.4E-07 56.3 3.3 23 193-215 23-45 (260)
490 3c5c_A RAS-like protein 12; GD 94.3 0.023 7.8E-07 53.1 3.3 22 194-215 23-44 (187)
491 4bas_A ADP-ribosylation factor 94.3 0.018 6.3E-07 53.3 2.6 23 193-215 18-40 (199)
492 3zvl_A Bifunctional polynucleo 94.3 0.024 8.2E-07 61.0 3.8 26 191-216 257-282 (416)
493 3te6_A Regulatory protein SIR3 94.3 0.018 6.3E-07 60.4 2.8 28 190-217 43-70 (318)
494 2o52_A RAS-related protein RAB 94.3 0.02 7E-07 54.0 2.9 22 194-215 27-48 (200)
495 1g8p_A Magnesium-chelatase 38 94.3 0.012 4.2E-07 60.0 1.4 26 192-217 45-70 (350)
496 2f7s_A C25KG, RAS-related prot 94.2 0.022 7.6E-07 54.0 3.0 22 194-215 27-48 (217)
497 2h17_A ADP-ribosylation factor 94.2 0.021 7.2E-07 52.7 2.8 23 193-215 22-44 (181)
498 2ew1_A RAS-related protein RAB 94.2 0.022 7.7E-07 54.4 3.1 22 194-215 28-49 (201)
499 1wf3_A GTP-binding protein; GT 94.2 0.023 8E-07 58.6 3.4 22 194-215 9-30 (301)
500 2h57_A ADP-ribosylation factor 94.2 0.017 6E-07 53.5 2.2 24 193-216 22-45 (190)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.97 E-value=9.6e-30 Score=271.66 Aligned_cols=159 Identities=21% Similarity=0.232 Sum_probs=130.3
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 4 ~l~i~~ls~~y~~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~ 78 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT-----PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78 (359)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGG
T ss_pred EEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchh
Confidence 57899999999876 789988 999999999999999999999999999998743
Q ss_pred -CeEEEEcCCCccccC-------------CCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 222 -KRVMIVDTSSEIGGN-------------GDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------------~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
++|+|++|...+... ...+. .++.. .+++..||+|||||++||+|++++|+
T Consensus 79 ~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp GSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 236666665432100 00000 02222 25678899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 273 VIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+||||||+++||+..+..+ ++.|+|+|++||+.+++..+||++++|..|++...+
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 9999999999999987665 356999999999999999999999999999997754
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.4e-29 Score=272.29 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=131.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +.|
T Consensus 3 ~l~~~~l~~~yg~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV-----VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77 (381)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCE
T ss_pred EEEEEeEEEEECCE-----EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCE
Confidence 47899999999876 789988 899999999999999999999999999998743 357
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
++++|...+... ..++ ..++.. .+++..||+|||||++||+|++.+|++||+
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 888776533110 0111 012322 256788999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ .+.|+|+|++||+.+++..+||++++|..|++...+
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999987665 245999999999999999999999999999997754
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=5.8e-29 Score=266.25 Aligned_cols=165 Identities=16% Similarity=0.240 Sum_probs=131.7
Q ss_pred ccCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------- 221 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------- 221 (660)
.....++++||+++|+.. .+...+|+++ |++|++++|+||||||||||+|+|+|++.|+.|
T Consensus 20 ~~~~mi~v~~ls~~y~~~-~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQG-TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp ---CCEEEEEEEEEEECS-SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHH
T ss_pred CCCceEEEEeEEEEeCCC-CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 345679999999999742 1123588988 999999999999999999999999999998733
Q ss_pred ------CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHH
Q 038101 222 ------KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 ------krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL 267 (660)
++|+|++|...+... ...+ ..++.. .+++..||+|||||++||+|+
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL 178 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARAL 178 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHT
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 247888876533110 0111 013332 256789999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+++|++||+||||++||+..+..+ .+.|+|||++||+++++..+||++++|..|++..
T Consensus 179 ~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 179 ASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 244 (366)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred hcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999987765 2459999999999999999999999999999865
No 4
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.96 E-value=1.1e-28 Score=263.39 Aligned_cols=159 Identities=20% Similarity=0.247 Sum_probs=130.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| ++|
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGKV-----KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREV 77 (359)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEEEEEEECCE-----EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcE
Confidence 47899999999875 788888 899999999999999999999999999998743 347
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|++|...+... ..++ ..++.. .+++..||+|||||++||+|++.+|++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 888776433110 0110 013322 256678999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g 216 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999987765 234999999999999999999999999999987654
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=4.8e-29 Score=257.02 Aligned_cols=162 Identities=21% Similarity=0.319 Sum_probs=130.9
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
...++++||+++|++. ..+|+++ +++|++++|+||||||||||+|+|+|++.|+.|
T Consensus 5 ~~~l~i~~ls~~y~~~----~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 5 DYILKVEELNYNYSDG----THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp CEEEEEEEEEEECTTS----CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHH
T ss_pred CcEEEEEEEEEEECCC----CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHH
Confidence 3468999999999753 1488888 899999999999999999999999999988743
Q ss_pred ---CeEEEEcCCCc--cccC------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 ---KRVMIVDTSSE--IGGN------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 ---krV~~Vdq~~e--Ia~~------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
++|+|++|... +... ..++ ..++.. .+++..||+|||||++||+|+++
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 14788877542 1110 0111 113332 25667899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||+||||++||+.++..+ . +.|.|||++||+++++..+||+++++..|++...+
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999987765 3 45999999999999999999999999999987644
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.3e-28 Score=263.16 Aligned_cols=159 Identities=20% Similarity=0.274 Sum_probs=130.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| ++|
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGNF-----TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNV 77 (362)
T ss_dssp CEEEEEEEEESSSS-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTE
T ss_pred EEEEEeEEEEECCE-----EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcE
Confidence 47899999999875 788888 899999999999999999999999999998743 347
Q ss_pred EEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|++|...+... ..++ ..++.. .+++..||+|||||++||+|++++|++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 788776433110 0111 013322 256788999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 216 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVG 216 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999987775 234999999999999999999999999999987654
No 7
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.96 E-value=1.2e-28 Score=262.77 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=130.6
Q ss_pred ceEEEEeEEEEE-Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------C
Q 038101 163 RKGAIIGLTCRV-GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------K 222 (660)
Q Consensus 163 ~~LeI~~Lt~ry-gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------k 222 (660)
..++++||+++| ++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +
T Consensus 13 ~~l~~~~l~~~y~g~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r 87 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGA-----RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKR 87 (355)
T ss_dssp EEEEEEEEEECCTTST-----TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGS
T ss_pred ceEEEEEEEEEEcCCC-----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhC
Confidence 358899999999 765 688888 899999999999999999999999999998743 2
Q ss_pred eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
+|+|++|...+... ..++ ..++.. .+++..||+|||||++||+|++.+|++|
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 47777775432110 0111 013322 2567889999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 275 VIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999987775 234999999999999999999999999999987654
No 8
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.96 E-value=1.2e-28 Score=264.21 Aligned_cols=159 Identities=21% Similarity=0.252 Sum_probs=129.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------CeE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------KRV 224 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------krV 224 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| ++|
T Consensus 11 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGNF-----TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNI 85 (372)
T ss_dssp CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTE
T ss_pred eEEEEEEEEEECCE-----EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcE
Confidence 58999999999875 788888 899999999999999999999999999998743 247
Q ss_pred EEEcCCCcccc-----------C--CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEE
Q 038101 225 MIVDTSSEIGG-----------N--GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVI 276 (660)
Q Consensus 225 ~~Vdq~~eIa~-----------~--~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLIL 276 (660)
+|++|...+.. . ..++ ..++.. .+++..||+|||||++||+|++.+|++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 78877643211 0 0011 013322 256789999999999999999999999999
Q ss_pred eCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 277 DEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 277 DEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999987775 234999999999999999999999999999987654
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=6.7e-29 Score=254.31 Aligned_cols=160 Identities=18% Similarity=0.275 Sum_probs=130.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++||+++|++. .+|+++ +.+|++++|+||||||||||+|+|+|++.|+.|.
T Consensus 10 ~~l~~~~l~~~~~~~-----~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQ-----ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp CEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHH
T ss_pred ceEEEEeEEEEeCCe-----eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHh
Confidence 368999999999876 789988 8999999999999999999999999999988552
Q ss_pred -eEEEEcCCCccccC---------C--CCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc------
Q 038101 223 -RVMIVDTSSEIGGN---------G--DIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH------ 269 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~---------~--~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~------ 269 (660)
.++++.+...+... + ... ..++.. .+++..||+|||||++||+|+++
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 85 RTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp HHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred heEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 36777765433110 0 000 012222 24567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH-------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI-------AQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i-------~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||+||||++||+..+..+ .+ .|+|||++||+.+++..+||+++++..|++...+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g 230 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACG 230 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999987765 23 4689999999999999999999999999987644
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=1.3e-28 Score=245.53 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=127.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 4 ~l~~~~l~~~y~~~-----~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 78 (224)
T 2pcj_A 4 ILRAENIKKVIRGY-----EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78 (224)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHH
T ss_pred EEEEEeEEEEECCE-----eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHH
Confidence 58899999999875 789888 899999999999999999999999999988733
Q ss_pred ---CeEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 ---KRVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 ---krV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+.|+|++|...+... ..++ ..++.. .+++..||+|||||++||+|++++
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 237777775432110 0111 013322 245678999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||+.++..+ ++.|.|||++||+.+++ .+||+++.+..|++...
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999987765 34599999999999987 78999999999998653
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=2e-28 Score=250.01 Aligned_cols=160 Identities=20% Similarity=0.279 Sum_probs=129.6
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK---------------- 222 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk---------------- 222 (660)
+..++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|.
T Consensus 4 ~~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGGH-----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp -CCEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS
T ss_pred CceEEEeeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccc
Confidence 3468999999999875 789988 8999999999999999999999999999887331
Q ss_pred ---------------eEEEEcCCCcccc--------------CCCCC-------------CCCCCc---cccCCCCCHHH
Q 038101 223 ---------------RVMIVDTSSEIGG--------------NGDIP-------------HPGIGN---ARRMQVPNSEM 257 (660)
Q Consensus 223 ---------------rV~~Vdq~~eIa~--------------~~~ip-------------~~~Lg~---~rrl~vLSgG~ 257 (660)
.|+|++|...+.. ...++ ..++.. .+++..||+||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 158 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred cccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHH
Confidence 2677776542210 00111 123332 24567899999
Q ss_pred HHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 258 QHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 258 qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|||++||+|++++|++||+||||++||+..+..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 159 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999987765 34599999999999999999999999999998654
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=2e-28 Score=246.00 Aligned_cols=160 Identities=15% Similarity=0.201 Sum_probs=127.2
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------------
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------------- 221 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------------- 221 (660)
++++||+++|++.. ....+|+++ +.+|++++|+||||||||||||+|+|++.|+.|
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 68999999997420 012578888 999999999999999999999999999998743
Q ss_pred --CeEEEEcCCCccccC-------------C---CCC-------------CCCCCc---cccCCCCCHHHHHHHHHHHHH
Q 038101 222 --KRVMIVDTSSEIGGN-------------G---DIP-------------HPGIGN---ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~-------------~---~ip-------------~~~Lg~---~rrl~vLSgG~qqrv~IA~aL 267 (660)
+.|+|++|...+... . ..+ ..++.. .+++..||+|||||++||+|+
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 138888886543210 0 111 013332 245788999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+++|++||+||||++||+..+..+ . +.|.|||++||+++.+ .+||+++.+..|++...
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 999999999999999999997775 2 3499999999999965 68999999999998653
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.96 E-value=3.1e-28 Score=260.90 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=128.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~ 77 (372)
T 1g29_1 3 GVRLVDVWKVFGEV-----TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP 77 (372)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC
T ss_pred EEEEEeEEEEECCE-----EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC
Confidence 47899999999875 788888 899999999999999999999999999998743
Q ss_pred ---CeEEEEcCCCccccC-------------CCCCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccC
Q 038101 222 ---KRVMIVDTSSEIGGN-------------GDIPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 222 ---krV~~Vdq~~eIa~~-------------~~ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
++|+|++|...+... ..++. .++.. .+++..||+|||||++||+|++.+
T Consensus 78 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 78 PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 135666665322100 00110 12322 256678999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 271 PQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
|++||||||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999987765 235999999999999999999999999999987654
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=4.3e-28 Score=248.27 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=129.2
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|.
T Consensus 24 ~l~i~~l~~~y~~~-----~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 98 (263)
T 2olj_A 24 MIDVHQLKKSFGSL-----EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98 (263)
T ss_dssp SEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHH
T ss_pred eEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHH
Confidence 68999999999865 789988 8999999999999999999999999999887331
Q ss_pred --eEEEEcCCCccccC--------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 223 --RVMIVDTSSEIGGN--------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 223 --rV~~Vdq~~eIa~~--------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+|+|++|...+... ..++ ..++.. .+++..||+|||||++||+|++++|
T Consensus 99 ~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 36777775432110 0111 013322 2456789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+..|++...
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999997775 34599999999999999999999999999998653
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=3.2e-28 Score=248.24 Aligned_cols=159 Identities=21% Similarity=0.362 Sum_probs=130.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------C
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----------------K 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----------------k 222 (660)
..++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +
T Consensus 14 ~~l~i~~l~~~y~~~-----~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 88 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKK-----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88 (256)
T ss_dssp CCEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHT
T ss_pred CeEEEEEEEEEECCE-----EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhh
Confidence 457899999999865 789888 899999999999999999999999999988743 2
Q ss_pred eEEEEcCCCccccC-------------CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 223 RVMIVDTSSEIGGN-------------GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------------~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
.|+|++|...+... ...+ ..++.. .+++..||+|||||++||+|++++|++|
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 37777776432110 0111 013332 2456789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
||||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+..|++...
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~ 227 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 227 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe
Confidence 99999999999997775 34699999999999999999999999999998653
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=3.1e-28 Score=245.16 Aligned_cols=160 Identities=16% Similarity=0.188 Sum_probs=130.0
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
.+.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 4 ~~~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 78 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI-----HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78 (240)
T ss_dssp SEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred CceEEEEeEEEEECCe-----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH
Confidence 3468999999999875 789888 899999999999999999999999999988733
Q ss_pred --CeEEEEcCCCccccC---------C---CCCC-------------C-CCCc--cccCCCCCHHHHHHHHHHHHHccCC
Q 038101 222 --KRVMIVDTSSEIGGN---------G---DIPH-------------P-GIGN--ARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~---------~---~ip~-------------~-~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
++|+|++|...+... + .... . ++.. .+++..||+|||||++||+|++++|
T Consensus 79 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 158 (240)
T 1ji0_A 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp HHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred HhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 138888876432110 0 0110 1 1211 2456789999999999999999999
Q ss_pred cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 272 QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 272 ~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+||||++||+.++..+ ++.|.|||++||+.+.+..+||+++.+..|++...
T Consensus 159 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 220 (240)
T 1ji0_A 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999997775 34699999999999999899999999999998653
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.96 E-value=2.1e-28 Score=260.47 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=129.0
Q ss_pred eEEEEeEEEEECcccccccc--ccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 164 KGAIIGLTCRVGRAVSGSAN--LLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~--iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
.++++||+++|++. . +|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 3 ~l~i~~l~~~y~~~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~ 77 (353)
T 1oxx_K 3 RIIVKNVSKVFKKG-----KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77 (353)
T ss_dssp CEEEEEEEEEEGGG-----TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS
T ss_pred EEEEEeEEEEECCE-----eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC
Confidence 47899999999865 6 88888 899999999999999999999999999988743
Q ss_pred ----CeEEEEcCCCcccc-----------C--CCCC-------------CCCCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 ----KRVMIVDTSSEIGG-----------N--GDIP-------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 ----krV~~Vdq~~eIa~-----------~--~~ip-------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
++|+|++|...+.. . ..++ ..++.. .+++..||+|||||++||+|++.
T Consensus 78 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 23667766543211 0 0111 013322 25667899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||||||+++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999987765 235999999999999999999999999999987654
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=3.2e-28 Score=247.34 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=129.0
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------- 221 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 7 ~l~i~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (257)
T 1g6h_A 7 ILRTENIVKYFGEF-----KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH 81 (257)
T ss_dssp EEEEEEEEEEETTE-----EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEeeeEEEECCE-----eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 58999999999875 789988 899999999999999999999999999998733
Q ss_pred CeEEEEcCCCcccc-----------C-C---C-----------CCC-------------CCCCc--cccCCCCCHHHHHH
Q 038101 222 KRVMIVDTSSEIGG-----------N-G---D-----------IPH-------------PGIGN--ARRMQVPNSEMQHK 260 (660)
Q Consensus 222 krV~~Vdq~~eIa~-----------~-~---~-----------ip~-------------~~Lg~--~rrl~vLSgG~qqr 260 (660)
+.|+|++|...+.. . . . ... .++.. .+++..||+|||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp HTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHH
Confidence 13777777543210 0 0 0 110 12221 24567899999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++||+|++++|++||+||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|++...
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999997775 34599999999999999899999999999998654
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=6.1e-28 Score=256.66 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=127.5
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------RVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------rV~ 225 (660)
++++||+++|++ . +|+++ +++|++++|+||||||||||||+|+|++.|+.|. +|+
T Consensus 2 l~~~~l~~~y~~-----~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN-----F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS-----C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCE
T ss_pred EEEEEEEEEECC-----E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEE
Confidence 679999999974 2 67877 8999999999999999999999999999987441 367
Q ss_pred EEcCCCccccC-------------CCCC----------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 226 IVDTSSEIGGN-------------GDIP----------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 226 ~Vdq~~eIa~~-------------~~ip----------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
|++|...+... ...+ ..++.. .+++..||+|||||++||+|++++|++||||||+
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 77775432110 0011 013322 2567789999999999999999999999999999
Q ss_pred CCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 281 TKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 281 sgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++||+..+..+ .+.|.|+|++||+.+++..+||++++|..|++...+
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g 210 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999997775 235999999999999999999999999999987654
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=1.3e-27 Score=243.04 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=129.2
Q ss_pred eEEEEeEEEEEC-ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCccc
Q 038101 164 KGAIIGLTCRVG-RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----KRVMIVDTSSEIG 234 (660)
Q Consensus 164 ~LeI~~Lt~ryg-r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----krV~~Vdq~~eIa 234 (660)
.++++||+++|+ +. .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +.|+|++|...+.
T Consensus 4 ~l~i~~l~~~y~~~~-----~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAEN-----FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSP 78 (253)
T ss_dssp EEEEEEEEEEETTTT-----EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCS
T ss_pred eEEEeeEEEEeCCCC-----eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccC
Confidence 588999999998 65 688887 899999999999999999999999999998865 3589998865432
Q ss_pred cC---------C-----C---CCC-------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCC
Q 038101 235 GN---------G-----D---IPH-------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 235 ~~---------~-----~---ip~-------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsg 282 (660)
.. + . .+. .++.. .+++..||+|||||++||+|++++|++||+||||++
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 10 0 0 000 13322 245678999999999999999999999999999999
Q ss_pred ccHHHHHHH-------Hhc-CCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 283 LEAMAASTI-------AQR-GIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 283 LD~~a~~~i-------~~~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||+.++..+ .+. |.|||++||+.+++..+||+++.+..|+ ..
T Consensus 159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999998775 234 9999999999999989999999999998 54
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.95 E-value=2.4e-27 Score=239.47 Aligned_cols=154 Identities=15% Similarity=0.246 Sum_probs=121.7
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC----------------eEE
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------RVM 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------rV~ 225 (660)
++++||+++|++ .|+++ +++ ++++|+||||||||||||+|+|++.|+.|. +|+
T Consensus 2 l~~~~l~~~y~~-------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCB
T ss_pred EEEEEEEEEeCC-------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEE
Confidence 579999999973 37777 899 999999999999999999999999987442 244
Q ss_pred EEcCCCccccC---------CC-C--------------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCC
Q 038101 226 IVDTSSEIGGN---------GD-I--------------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEI 279 (660)
Q Consensus 226 ~Vdq~~eIa~~---------~~-i--------------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEP 279 (660)
|++|...+... +. . ...++.. .+++..||+|||||++||+|++++|++||+|||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55443321100 00 0 0112322 245678999999999999999999999999999
Q ss_pred CCCccHHHHHHH-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 280 GTKLEAMAASTI-------A-QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 280 gsgLD~~a~~~i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+.++..+ . +.|.|||++||+.+++..+||+++.+..|++...
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999997775 2 3499999999999999999999999999998653
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=7e-27 Score=238.81 Aligned_cols=160 Identities=16% Similarity=0.260 Sum_probs=128.4
Q ss_pred eEEEEeEEEEEC--ccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------Ce
Q 038101 164 KGAIIGLTCRVG--RAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------KR 223 (660)
Q Consensus 164 ~LeI~~Lt~ryg--r~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------kr 223 (660)
.++++||+++|+ +.. ...+|+++ +.+|++++|+||||||||||||+|+|++.|+.| +.
T Consensus 2 ~l~~~~l~~~y~~~~~~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPL--EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTT--CEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCcc--ccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhh
Confidence 478999999997 300 01578887 899999999999999999999999999988743 24
Q ss_pred EEEEcCCC--cccc----------CCC-CCC-------------CCCC--c--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 224 VMIVDTSS--EIGG----------NGD-IPH-------------PGIG--N--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 224 V~~Vdq~~--eIa~----------~~~-ip~-------------~~Lg--~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
|+|++|.. .+.. ... .+. .++. . .+++..||+|||||++||+|++++|++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 78888863 1111 000 111 2454 2 245678999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 274 IVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
||+||||++||+.++..+ .+.|.|||++||+.+.+..+||+++.+..|++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999997775 3459999999999999988999999999999865
No 23
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=7.3e-27 Score=239.67 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=126.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|+.. +...+|+++ +++|++++|+||||||||||||+|+|++.|+.| +
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 58999999999751 001688887 899999999999999999999999999998743 1
Q ss_pred eEEEEcCCCccccC----------CCCCC-------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 RVMIVDTSSEIGGN----------GDIPH-------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 rV~~Vdq~~eIa~~----------~~ip~-------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+|+|++|...+... ..... . ++.. .++...||+|||||++||+|+++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 47888876533210 00000 0 1111 13567899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHHH--------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTIA--------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i~--------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++|||||||++||+..+..+. +.|.|||++||+.+++.. ||+++.+..|++...
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~ 237 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCEQ 237 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEEE
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence 99999999999999999987761 238999999999998864 999999999998654
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=4.4e-27 Score=238.08 Aligned_cols=157 Identities=16% Similarity=0.253 Sum_probs=124.5
Q ss_pred eEEEEeEEEEE--Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----------------
Q 038101 164 KGAIIGLTCRV--GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----------------- 221 (660)
Q Consensus 164 ~LeI~~Lt~ry--gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----------------- 221 (660)
.++++||+++| ++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 7 ~~~~~~l~~~y~~~~~-----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~ 81 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSP-----VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL 81 (247)
T ss_dssp EEEEEEEEEESSTTSC-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred ceeEEEEEEEeCCCCc-----ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH
Confidence 47899999999 343 688888 899999999999999999999999999988743
Q ss_pred -CeEEEEcCCCccccC-------CCCCCC------------CCCc-------------cccCCCCCHHHHHHHHHHHHHc
Q 038101 222 -KRVMIVDTSSEIGGN-------GDIPHP------------GIGN-------------ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 -krV~~Vdq~~eIa~~-------~~ip~~------------~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.|+|++|...+... ...+.. ++.. .++...||+|||||++||+|++
T Consensus 82 ~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 82 RRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp HHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred HhcEEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 137788776533210 000100 1110 0234689999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++|++||+||||++||+.....+ ...|.|||++||+.+.+. .||+++.+..|++...
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ 224 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE
Confidence 99999999999999999997775 235999999999999886 4999999999998653
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=3.4e-27 Score=243.36 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=128.1
Q ss_pred cCceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 038101 161 RNRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------- 221 (660)
Q Consensus 161 rn~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------- 221 (660)
.+..++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++.|+.|
T Consensus 18 ~~~~l~~~~l~~~y~~~-----~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGK-----TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp -CEEEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH
T ss_pred CCceEEEEeEEEEECCE-----EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH
Confidence 34468999999999875 789988 899999999999999999999999999988733
Q ss_pred ----CeEEEEcCCCcc--cc---------CCCCC--------C-------------CCCCc--cccCCCCCHHHHHHHHH
Q 038101 222 ----KRVMIVDTSSEI--GG---------NGDIP--------H-------------PGIGN--ARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 222 ----krV~~Vdq~~eI--a~---------~~~ip--------~-------------~~Lg~--~rrl~vLSgG~qqrv~I 263 (660)
+.|+|++|...+ .. .+..+ . .++.. .+++..||+|||||++|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 136677654221 00 00000 0 12221 24567899999999999
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEE--EEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQL--VATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtV--I~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|+|++++|++||+||||++||+.++..+ ++.|.|| |++||+.+++..+||+++.+..|++...
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999997775 3449999 9999999998889999999999998654
No 26
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=1.4e-26 Score=231.65 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=125.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGG 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~ 235 (660)
.++++||+++|+.. ...+|+++ +++|++++|+||||||||||||+|+|++.|+.|. +|+|++|...+..
T Consensus 6 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~ 82 (229)
T 2pze_A 6 EVVMENVTAFWEEG---GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEECSSTT---SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCS
T ss_pred eEEEEEEEEEeCCC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccC
Confidence 57899999999521 12688888 8999999999999999999999999999988553 4788888654321
Q ss_pred C--------C-CCC---------CCCCCc-------------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 236 N--------G-DIP---------HPGIGN-------------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 236 ~--------~-~ip---------~~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
. + ... ..++.. .++...||+|||||++||+|++++|++||+||||++||
T Consensus 83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD 162 (229)
T 2pze_A 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 162 (229)
T ss_dssp BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC
T ss_pred CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC
Confidence 0 0 000 001110 01236899999999999999999999999999999999
Q ss_pred HHHHHHHHh-------cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 285 AMAASTIAQ-------RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 285 ~~a~~~i~~-------~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+..+..+.+ .|.|||++||+.+.+. .||+++.+..|++...
T Consensus 163 ~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 163 VLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEE
Confidence 999877632 3889999999999876 5999999999998653
No 27
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=6.6e-27 Score=235.28 Aligned_cols=159 Identities=13% Similarity=0.181 Sum_probs=125.9
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGG 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~ 235 (660)
.++++||+++|++. ...+|+++ +++|++++|+||||||||||||+|+|++.|+.|. +|+|++|...+..
T Consensus 3 ~l~~~~l~~~y~~~---~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~ 79 (237)
T 2cbz_A 3 SITVRNATFTWARS---DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQN 79 (237)
T ss_dssp CEEEEEEEEESCTT---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCS
T ss_pred eEEEEEEEEEeCCC---CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCC
Confidence 47899999999731 01688887 9999999999999999999999999999987553 4788888654321
Q ss_pred C--------C-CCCC---------CCCC-------------ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc
Q 038101 236 N--------G-DIPH---------PGIG-------------NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE 284 (660)
Q Consensus 236 ~--------~-~ip~---------~~Lg-------------~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD 284 (660)
. + .... .++. ..++...||+|||||++||+|++.+|++||+||||++||
T Consensus 80 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 80 DSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp EEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred cCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 0 0 0000 0110 023567899999999999999999999999999999999
Q ss_pred HHHHHHHH---------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 285 AMAASTIA---------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 285 ~~a~~~i~---------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+..+..+. ..|.|||++||+.+.+. .||+++.+..|++...
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEe
Confidence 99877651 24899999999999875 6999999999998653
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=6.2e-27 Score=237.02 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=119.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhc--cccCCCC----------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARV--LANDYKK---------------- 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~Iagl--L~p~~Gk---------------- 222 (660)
.++++||+++|++. .+|+++ +++|++++|+||||||||||+|+|+|+ +.|+.|.
T Consensus 3 ~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGE-----TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH
T ss_pred eEEEEeEEEEECCE-----EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH
Confidence 47899999999875 789988 899999999999999999999999998 6665431
Q ss_pred ---eEEEEcCCCccccC--------------CC--CC-------------CCCCC-c--cccCCC-CCHHHHHHHHHHHH
Q 038101 223 ---RVMIVDTSSEIGGN--------------GD--IP-------------HPGIG-N--ARRMQV-PNSEMQHKVLIEAV 266 (660)
Q Consensus 223 ---rV~~Vdq~~eIa~~--------------~~--ip-------------~~~Lg-~--~rrl~v-LSgG~qqrv~IA~a 266 (660)
.++|++|...+... .. .. ..++. . .+++.. ||+|||||++||+|
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAra 157 (250)
T 2d2e_A 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQL 157 (250)
T ss_dssp HHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHH
T ss_pred HhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 13444443221100 00 00 01331 1 245567 99999999999999
Q ss_pred HccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEEcCeEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI-MNPSLEMLIGGVQNV 326 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i-~dril~l~~G~I~~V 326 (660)
++++|++||+||||++||+..+..+ .+.|.|||++||+.+++..+ ||+++.+..|++...
T Consensus 158 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~ 225 (250)
T 2d2e_A 158 LVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT 225 (250)
T ss_dssp HHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE
Confidence 9999999999999999999997775 23589999999999998888 599999999998654
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.94 E-value=2.5e-26 Score=235.09 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=126.1
Q ss_pred CceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCCC---------------
Q 038101 162 NRKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL--ANDYK--------------- 221 (660)
Q Consensus 162 n~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~G--------------- 221 (660)
+..++++||+++|++. .+|+++ +++|++++|+||||||||||||+|+|++ .|+.|
T Consensus 18 ~~~l~~~~l~~~y~~~-----~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~ 92 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDK-----AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPE 92 (267)
T ss_dssp --CEEEEEEEEEETTE-----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHH
T ss_pred CceEEEEeEEEEECCE-----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHH
Confidence 4468999999999865 789988 8999999999999999999999999984 44422
Q ss_pred ----CeEEEEcCCCcccc------------------CC--CCC-------------CCCCCc---cccCC-CCCHHHHHH
Q 038101 222 ----KRVMIVDTSSEIGG------------------NG--DIP-------------HPGIGN---ARRMQ-VPNSEMQHK 260 (660)
Q Consensus 222 ----krV~~Vdq~~eIa~------------------~~--~ip-------------~~~Lg~---~rrl~-vLSgG~qqr 260 (660)
..|+|++|...+.. .+ .+. ..++.. .+++. .||+|||||
T Consensus 93 ~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QR 172 (267)
T 2zu0_C 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR 172 (267)
T ss_dssp HHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHH
T ss_pred HHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 12778877643210 00 000 123421 23455 599999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHh-cCcEEEEEcCeEEEEe
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLI-MNPSLEMLIGGVQNVT 327 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i-~dril~l~~G~I~~V~ 327 (660)
++||+|++++|++||+||||++||+.++..+ ++.|.|||++||+.+++..+ ||+++.+..|++...+
T Consensus 173 v~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 173 NDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999998876 23589999999999988776 8999999999986543
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.94 E-value=1.1e-26 Score=243.13 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=127.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||+++|+.. ..+|+++ |++|++++|+||||||||||+++|+|++.|+.|
T Consensus 52 ~~i~~~~vs~~y~~~----~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r 127 (306)
T 3nh6_A 52 GRIEFENVHFSYADG----RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127 (306)
T ss_dssp CCEEEEEEEEESSTT----CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHH
T ss_pred CeEEEEEEEEEcCCC----CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHh
Confidence 357899999999632 2688888 899999999999999999999999999998743
Q ss_pred CeEEEEcCCCccccC-------CCCCCC------------CC-----------Cc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN-------GDIPHP------------GI-----------GN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~-------~~ip~~------------~L-----------g~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.|+||+|...+... .+.+.. ++ .. .++...||+|||||++||||+++
T Consensus 128 ~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 128 SHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp HTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 247888887544210 000000 01 00 02335799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|+||||||||++||+.....+ ...|.|+|++||+++.+.. ||++++|..|++...+
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERG 270 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEEC
Confidence 9999999999999999987775 2358999999999999876 9999999999997654
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.94 E-value=5.5e-27 Score=236.22 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=120.0
Q ss_pred EEEEeEEEEE-Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 165 GAIIGLTCRV-GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 165 LeI~~Lt~ry-gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
++++||+++| ++. .+|+++ +++|++++|+|||||||||||++|+|++.|+.|.
T Consensus 2 l~~~~l~~~y~~~~-----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T 1mv5_A 2 LSARHVDFAYDDSE-----QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (243)
T ss_dssp EEEEEEEECSSSSS-----CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEEeCCCC-----ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHh
Confidence 6799999999 444 688888 8999999999999999999999999999887542
Q ss_pred eEEEEcCCCcccc--------CCCCCCC------------CCCc-------------cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 RVMIVDTSSEIGG--------NGDIPHP------------GIGN-------------ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 rV~~Vdq~~eIa~--------~~~ip~~------------~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.|+|++|...+.. .+..+.. ++.. .++...||+|||||++||+|+++
T Consensus 77 ~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred hEEEEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 3556655433210 0000000 1111 02345899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+|++||+||||++||+..+..+ ...|.|||++||+.+.+. .||+++.+..|++..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG 217 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE
Confidence 9999999999999999875443 125999999999999876 599999999999753
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=3.9e-26 Score=233.83 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=124.3
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEE-
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------KRVM- 225 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------krV~- 225 (660)
++++||+++|+.. .+...+|+++ ++ |++++|+||||||||||||+|+|++ |+.| ++++
T Consensus 2 l~~~~l~~~y~~~-~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGK-GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCC-CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 6799999999751 0001688887 89 9999999999999999999999999 8743 1466
Q ss_pred EEcCCCccccC------------CCC---------CCCCCC-c--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 226 IVDTSSEIGGN------------GDI---------PHPGIG-N--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 226 ~Vdq~~eIa~~------------~~i---------p~~~Lg-~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
|++|...+ .. ... ...++. . .+++..||+|||||++||+|++++|++||+||||+
T Consensus 79 ~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 79 NLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp CCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred EeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 77665433 10 000 112454 2 35677899999999999999999999999999999
Q ss_pred CccHHHHHHHH----hcCCEEEEEEcChhHHHHhcC-cEEEEEcCeEEEE
Q 038101 282 KLEAMAASTIA----QRGIQLVATAHGVTIENLIMN-PSLEMLIGGVQNV 326 (660)
Q Consensus 282 gLD~~a~~~i~----~~GvtVI~TtH~~~l~~~i~d-ril~l~~G~I~~V 326 (660)
+||+.++..+. +...|||++||+.+++..+|| +++.+..|++...
T Consensus 158 ~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~ 207 (263)
T 2pjz_A 158 NVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGP 207 (263)
T ss_dssp TCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEE
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEe
Confidence 99999988762 221299999999999888999 9999999998653
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=8.4e-26 Score=230.33 Aligned_cols=160 Identities=13% Similarity=0.219 Sum_probs=124.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||+++|+... ...+|+++ +++|++++|+||||||||||||+|+|++.+. |
T Consensus 16 ~~l~i~~l~~~y~~~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-G~I~i~g~~i~~~~~~~~~ 92 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT--NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIR 92 (260)
T ss_dssp CCEEEEEEEECCTTCC--SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGBCHHHHH
T ss_pred CeEEEEEEEEEeCCCC--cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC-eEEEECCEEhhhcCHHHHh
Confidence 3588999999997530 01578887 8999999999999999999999999998753 2
Q ss_pred CeEEEEcCCCcccc--------CCCCCC-----------CCCCc-------------cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGG--------NGDIPH-----------PGIGN-------------ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~--------~~~ip~-----------~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+.|+|++|...+.. .+.... .++.. .++...||+|||||++||+|+++
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 172 (260)
T 2ghi_A 93 SIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLK 172 (260)
T ss_dssp TTEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHc
Confidence 24778877653321 000000 01110 12346899999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+|++||+||||++||+.....+ ...|.|||++||+.+.+. .||+++.+..|++...
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEK 234 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEE
Confidence 9999999999999999997765 234899999999999875 5999999999998654
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.93 E-value=9.7e-27 Score=250.89 Aligned_cols=158 Identities=14% Similarity=0.200 Sum_probs=123.6
Q ss_pred ceEEEEeEEEEE--Cccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----------------
Q 038101 163 RKGAIIGLTCRV--GRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK---------------- 221 (660)
Q Consensus 163 ~~LeI~~Lt~ry--gr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------- 221 (660)
..++++||+++| +.. .+|+++ |++|++++|+||||||||||||+|+|++. +.|
T Consensus 18 ~~i~~~~l~~~y~~~~~-----~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGN-----AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CCEEEEEEEEESSSSSC-----CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CeEEEEEEEEEecCCCe-----EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 357899999999 444 688988 99999999999999999999999999987 422
Q ss_pred --CeEEEEcCCCccccC---------CCCC---------CCCCCc--cccCCC-----------CCHHHHHHHHHHHHHc
Q 038101 222 --KRVMIVDTSSEIGGN---------GDIP---------HPGIGN--ARRMQV-----------PNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 --krV~~Vdq~~eIa~~---------~~ip---------~~~Lg~--~rrl~v-----------LSgG~qqrv~IA~aL~ 268 (660)
+.|++++|...+... .... ..++.. .+.... ||+|||||++||+|++
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 347788776543210 0000 011211 123333 9999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++|++||||||+++||+..+..+. ..|.|+|++||+.+.+ ..||++++|..|++.+.+
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYD 235 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEES
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEEC
Confidence 999999999999999999887762 3589999999998755 469999999999997753
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=7.9e-26 Score=229.68 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=123.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++||+++ .+|+++ +.+|++++|+||||||||||||+|+|++.|+ |.
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~ 73 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLAL 73 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhc
Confidence 4788999975 467777 8999999999999999999999999999886 52
Q ss_pred eEEEEcCCCcccc---------CCCCCC------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCc-------
Q 038101 223 RVMIVDTSSEIGG---------NGDIPH------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ------- 272 (660)
Q Consensus 223 rV~~Vdq~~eIa~---------~~~ip~------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~------- 272 (660)
+++|++|...+.. .+..+. .++.. .+++..||+|||||++||+|++++|+
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ 153 (249)
T 2qi9_C 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 153 (249)
T ss_dssp HEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred eEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCe
Confidence 3677777543311 011111 13322 24567899999999999999999999
Q ss_pred EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 273 VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
+||+||||++||+.++..+ .+.|.|||++||+.+++..+||+++.+..|++...
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999997775 34599999999999999899999999999998654
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.92 E-value=6.5e-26 Score=225.72 Aligned_cols=148 Identities=12% Similarity=0.177 Sum_probs=118.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-------------CeEEE
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-------------KRVMI 226 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-------------krV~~ 226 (660)
..++++||+++|++ .+|+++ +++|++++|+||||||||||||+|+|++.|+.| +.|+|
T Consensus 9 ~~l~~~~ls~~y~~------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~ 82 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82 (214)
T ss_dssp CEEEEEEEEEESSS------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred ceEEEEEEEEEeCC------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEE
Confidence 46889999999964 478887 899999999999999999999999999988743 23788
Q ss_pred EcCCCccccC-------------CCCC-----------CCCCCc-cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC
Q 038101 227 VDTSSEIGGN-------------GDIP-----------HPGIGN-ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 227 Vdq~~eIa~~-------------~~ip-----------~~~Lg~-~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs 281 (660)
++|...+... .... ..++.. .+++..||+|||||++||+|++++|++||+||||+
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 8876432110 0000 013322 34567899999999999999999999999999999
Q ss_pred CccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEE
Q 038101 282 KLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSL 316 (660)
Q Consensus 282 gLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril 316 (660)
+||+.++..+ .+.|.|||++||+.+++..+||+++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999887665 3458999999999998888888775
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.91 E-value=1.8e-24 Score=224.51 Aligned_cols=155 Identities=13% Similarity=0.111 Sum_probs=113.8
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGG 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~ 235 (660)
.++++||++.+ . .+|+++ +++|++++|+||||||||||||+|+|++.|+.|. +|+|++|...+..
T Consensus 40 ~l~~~~l~~~~--~-----~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 40 SLSFSNFSLLG--T-----PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMP 112 (290)
T ss_dssp ----------C--C-----CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCS
T ss_pred eEEEEEEEEcC--c-----eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCc
Confidence 46788888752 2 578877 8999999999999999999999999999987552 5888988654321
Q ss_pred C------CCCCC-----------CCCCc-------------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccH
Q 038101 236 N------GDIPH-----------PGIGN-------------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEA 285 (660)
Q Consensus 236 ~------~~ip~-----------~~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~ 285 (660)
. ..... .++.. .++...||+|||||++||+|++++|++||+||||++||+
T Consensus 113 ~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~ 192 (290)
T 2bbs_A 113 GTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (290)
T ss_dssp SBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred ccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCH
Confidence 0 00000 01110 012368999999999999999999999999999999999
Q ss_pred HHHHHHHh-------cCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 286 MAASTIAQ-------RGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 286 ~a~~~i~~-------~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
..+..+.+ .|.|||++||+.+.+. .||+++.+..|++...
T Consensus 193 ~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 193 LTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEe
Confidence 99887732 3899999999999876 5999999999998653
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=7e-24 Score=237.78 Aligned_cols=160 Identities=15% Similarity=0.190 Sum_probs=126.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+||||||||||+++|+|++.|+.|
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 358999999999741 02688888 999999999999999999999999999998754
Q ss_pred CeEEEEcCCCccccC--------CCCCCC------------CCCc-------------cccCCCCCHHHHHHHHHHHHHc
Q 038101 222 KRVMIVDTSSEIGGN--------GDIPHP------------GIGN-------------ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~~ip~~------------~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
++|++++|...+... +..+.. ++.+ .++...||+|||||++||||++
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 247788776543210 100110 1110 0123579999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
++|++||+||||++||+.....+ ...|.|+|++||+.+.+. .||+++.+.+|++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIER 559 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEE
Confidence 99999999999999999997765 134899999999999886 6999999999998653
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=4e-24 Score=240.44 Aligned_cols=161 Identities=14% Similarity=0.232 Sum_probs=128.1
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+||||||||||+++|+|++.|+.|
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 340 GSVSFENVEFRYFEN---TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp CCEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHH
T ss_pred CcEEEEEEEEEcCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHH
Confidence 358999999999642 12688988 999999999999999999999999999998743
Q ss_pred CeEEEEcCCCccccC-------CCCCCC-----------------------CCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN-------GDIPHP-----------------------GIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~-------~~ip~~-----------------------~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
++|++++|...+... .+.+.. ++.. .++...||+|||||++||||+++
T Consensus 417 ~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 417 GHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp HHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred hheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 247888887543210 000100 1110 12446799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||+||||++||+.....+ ...|.|+|++||+.+.+. .||+++.+.+|++...+
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFG 559 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEEC
Confidence 9999999999999999987776 236899999999999875 79999999999997754
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=9.4e-24 Score=236.73 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=127.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+||||||||||+++|+|++.|+.|
T Consensus 338 ~~i~~~~v~~~y~~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 338 GRIDIDHVSFQYNDN---EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp CCEEEEEEEECSCSS---SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 458999999999752 12588888 999999999999999999999999999998743
Q ss_pred CeEEEEcCCCccccC-------CCCCCC------------CC---------Cc----cccCCCCCHHHHHHHHHHHHHcc
Q 038101 222 KRVMIVDTSSEIGGN-------GDIPHP------------GI---------GN----ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 222 krV~~Vdq~~eIa~~-------~~ip~~------------~L---------g~----~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
++|++++|...+... .+.+.. ++ +. ..+...||||||||++||||+++
T Consensus 415 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 415 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred hheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 248888886543210 000100 00 00 02235799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|++||+||||++||+.....+ ...|.|+|++||+.+.+. .||+++.+.+|++...+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETG 557 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEEC
Confidence 9999999999999999987665 246899999999999875 59999999999987654
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.90 E-value=2e-23 Score=234.12 Aligned_cols=161 Identities=14% Similarity=0.177 Sum_probs=126.6
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++|++++|+.. ...+|+++ +++|+.++|+||||||||||+++|+|++.|+.|
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CcEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 358999999999731 01688888 999999999999999999999999999998743
Q ss_pred CeEEEEcCCCccccC--------CCCCCC------------CCCc-------------cccCCCCCHHHHHHHHHHHHHc
Q 038101 222 KRVMIVDTSSEIGGN--------GDIPHP------------GIGN-------------ARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 222 krV~~Vdq~~eIa~~--------~~ip~~------------~Lg~-------------~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
++|++++|...+... +..+.. ++.+ .++...||+|||||++||||++
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 247888876543210 110110 1110 0133579999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++|++||+||||++||+.....+ ...|.|+|++||+.+.+. .||+++.+.+|++...+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERG 560 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEE
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEec
Confidence 99999999999999999987765 235999999999999875 69999999999987643
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=7.2e-24 Score=238.73 Aligned_cols=158 Identities=16% Similarity=0.240 Sum_probs=125.7
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++|++++|+.. ..+|+++ +++|+.++|+||||||||||+++|+|++.|+.| +
T Consensus 354 ~i~~~~v~~~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 354 EIEFKNVWFSYDKK----KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CEEEEEEECCSSSS----SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEEEEEECCCC----CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHh
Confidence 58999999999743 2588888 999999999999999999999999999998744 2
Q ss_pred eEEEEcCCCccccC--------C--CCCC---------CCCCc---------c----ccCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN--------G--DIPH---------PGIGN---------A----RRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~--------~--~ip~---------~~Lg~---------~----rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
++++++|...+... + .... .++.. . .+-..||||||||++||||++++
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 48888887543210 0 0000 01100 0 11247999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNV 326 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V 326 (660)
|++||+||||++||+.....+ ...|.|+|++||+.+.+.. ||+++.+.+|++...
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEM 570 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEEC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence 999999999999999987765 2369999999999998865 999999999998663
No 43
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.6e-23 Score=234.07 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=121.1
Q ss_pred ceEEEEeEEEEECccccccccccc--cc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------CeEEEEcCCCcc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQ--DL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------KRVMIVDTSSEI 233 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~--dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------krV~~Vdq~~eI 233 (660)
..+++.+++++|++. .+. ++ +.+|++++|+||||||||||+|+|+|++.|+.| ..++++++....
T Consensus 268 ~~l~~~~l~~~~~~~------~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~ 341 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF------QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFP 341 (538)
T ss_dssp EEEEECCEEEEETTE------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCC
T ss_pred ceEEEcceEEEECCE------EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccc
Confidence 457899999999863 232 34 899999999999999999999999999999865 357777764321
Q ss_pred cc-----------CCC------------CCCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHH
Q 038101 234 GG-----------NGD------------IPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAA 288 (660)
Q Consensus 234 a~-----------~~~------------ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~ 288 (660)
.. ... +...++.. .+.+..||||||||++||+|++++|++||+||||++||+.++
T Consensus 342 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~ 421 (538)
T 3ozx_A 342 NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421 (538)
T ss_dssp CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 00 000 11112221 256788999999999999999999999999999999999987
Q ss_pred HHH--------HhcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 289 STI--------AQRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 289 ~~i--------~~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
..+ .+.|.|||++||+++++..+||+++++..
T Consensus 422 ~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 665 24699999999999999999999999975
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=4.8e-23 Score=229.96 Aligned_cols=152 Identities=16% Similarity=0.154 Sum_probs=123.2
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCccc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----KRVMIVDTSSEIG 234 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----krV~~Vdq~~eIa 234 (660)
..+++++++++|++. .|..+ +.+|++++|+||||||||||||+|+|++.|+.| .+|+|++|.....
T Consensus 286 ~~l~~~~l~~~~~~~------~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF------RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKAD 359 (538)
T ss_dssp EEEEECCEEEEETTE------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCC
T ss_pred eEEEEeeEEEEECCE------EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCC
Confidence 468899999999752 24333 789999999999999999999999999998865 3589998864321
Q ss_pred cC----------------------CCCCCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 235 GN----------------------GDIPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 235 ~~----------------------~~ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
.. ..+...++.. .+++..||+|||||++||++++.+|++|||||||++||+.++..
T Consensus 360 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~ 439 (538)
T 1yqt_A 360 YEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 439 (538)
T ss_dssp CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHH
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 00 0112233432 25678899999999999999999999999999999999999776
Q ss_pred H-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 291 I-------A-QRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 291 i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
+ + +.|.+||++||+.+++..+||+++.+..
T Consensus 440 i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 440 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 5 2 4599999999999999999999999974
No 45
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.90 E-value=4e-23 Score=232.28 Aligned_cols=160 Identities=14% Similarity=0.184 Sum_probs=125.6
Q ss_pred EEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------Ce
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------KR 223 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------kr 223 (660)
++++|++++|++.. ...+|+++ +++|+.++|+||||||||||+++|+|++.|+.| ++
T Consensus 342 i~~~~v~~~y~~~~--~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 342 LEFKNVHFAYPARP--EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp EEEEEEEEECSSCT--TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred EEEEEEEEEeCCCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 89999999997420 12588888 999999999999999999999999999998743 24
Q ss_pred EEEEcCCCccccC-------CCCCC---C------------CCC---------cc----ccCCCCCHHHHHHHHHHHHHc
Q 038101 224 VMIVDTSSEIGGN-------GDIPH---P------------GIG---------NA----RRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 224 V~~Vdq~~eIa~~-------~~ip~---~------------~Lg---------~~----rrl~vLSgG~qqrv~IA~aL~ 268 (660)
|++++|...+... .+.+. . ++. .. ++...||+|||||++||||++
T Consensus 420 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred eEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 7888886543210 00010 0 110 00 122679999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
++|++||+||||++||+.....+ ...|.|+|++||+.+.+. .||+++.+.+|++...+
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g 563 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NANMVAVLDQGKITEYG 563 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999999987765 134899999999999886 59999999999987644
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.89 E-value=1.1e-23 Score=235.04 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=114.4
Q ss_pred EeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe----------------------
Q 038101 168 IGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKR---------------------- 223 (660)
Q Consensus 168 ~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gkr---------------------- 223 (660)
+||+++||.. ..++.++ +.+|++++|+||||||||||||+|+|++.|+.|..
T Consensus 25 ~~ls~~yg~~----~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGVN----AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp CCEEEECSTT----CCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred cCcEEEECCc----cccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHH
Confidence 5899999864 1256666 89999999999999999999999999998877651
Q ss_pred -------EEEEcCCCcc-cc--CC---------C--------CCCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 224 -------VMIVDTSSEI-GG--NG---------D--------IPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 224 -------V~~Vdq~~eI-a~--~~---------~--------ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
++++.+.... .. .+ . +...++.. .+++..||+|||||++||+|++++|++|
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lL 180 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFY 180 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1222221000 00 00 0 00012221 2567789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
||||||++||+.++..+ ++.|.|||++||+.+++..+||+++.+..|
T Consensus 181 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 181 FFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999976664 356999999999999999999999998754
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=5.2e-23 Score=232.85 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=122.3
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-----CeEEEEcCCCccc
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-----KRVMIVDTSSEIG 234 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-----krV~~Vdq~~eIa 234 (660)
..+++++++++|++. .|..+ +.+|++++|+||||||||||||+|+|++.|+.| .+|+|++|.....
T Consensus 356 ~~l~~~~l~~~~~~~------~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAE 429 (607)
T ss_dssp EEEEECCEEEECSSC------EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCC
T ss_pred eEEEEeceEEEecce------EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCC
Confidence 468899999999753 24333 789999999999999999999999999998865 3689998865321
Q ss_pred cC---------C---C----------CCCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH
Q 038101 235 GN---------G---D----------IPHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 235 ~~---------~---~----------ip~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~ 290 (660)
.. . . +...++.. .+++..||+|||||++||++++++|++|||||||++||+.++..
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~ 509 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHH
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHH
Confidence 10 0 0 00012322 25678899999999999999999999999999999999998776
Q ss_pred H-------H-hcCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 291 I-------A-QRGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 291 i-------~-~~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
+ . +.|.|||++||+.+++..+||+++.+..
T Consensus 510 l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 510 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 5 2 4599999999999999999999999974
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.89 E-value=9.4e-23 Score=230.77 Aligned_cols=150 Identities=20% Similarity=0.255 Sum_probs=114.6
Q ss_pred EeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCe----------------------
Q 038101 168 IGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKR---------------------- 223 (660)
Q Consensus 168 ~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gkr---------------------- 223 (660)
+||+++||.. ..++.++ +.+|++++|+||||||||||||+|+|++.|+.|..
T Consensus 95 ~~ls~~yg~~----~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVN----AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTT----CCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCC----CeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 7889999764 1256666 89999999999999999999999999999887651
Q ss_pred -------EEEEcCCCcc-ccC--C---------CC--------CCCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEE
Q 038101 224 -------VMIVDTSSEI-GGN--G---------DI--------PHPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVI 274 (660)
Q Consensus 224 -------V~~Vdq~~eI-a~~--~---------~i--------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VL 274 (660)
++++.+.... ... + .. ...++.. .+.+..||+|||||++||+|++++|++|
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1122111000 000 0 00 0012322 2567789999999999999999999999
Q ss_pred EEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 275 VIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 275 ILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
||||||++||+..+..+ .+.|.|||++||+.+++..+||+++.+..+
T Consensus 251 lLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999986664 345999999999999999999999999754
No 49
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-22 Score=229.46 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=108.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----eEEEEcCCCcccc-----------C-CCCC----------C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK-----RVMIVDTSSEIGG-----------N-GDIP----------H 241 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk-----rV~~Vdq~~eIa~-----------~-~~ip----------~ 241 (660)
+..|++++|+||||||||||||+|+|++.|+.|. .++++++...... . .... .
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 454 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKP 454 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHH
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4455899999999999999999999999998764 5788877532110 0 0000 0
Q ss_pred CCCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHh
Q 038101 242 PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLI 311 (660)
Q Consensus 242 ~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i 311 (660)
.++.. .+.+..||||||||++||++++++|+|||+||||++||+.++..+ .+.|.|||++||+++++..+
T Consensus 455 l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 455 LRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp HTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 12221 256789999999999999999999999999999999999987654 24699999999999999999
Q ss_pred cCcEEEEEc--CeEEE
Q 038101 312 MNPSLEMLI--GGVQN 325 (660)
Q Consensus 312 ~dril~l~~--G~I~~ 325 (660)
||+++++.. |++..
T Consensus 535 aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 535 ADKVIVFEGIPSKNAH 550 (608)
T ss_dssp CSEEEECEEETTTEEE
T ss_pred CCEEEEEeCCCCeEEe
Confidence 999999875 55543
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-21 Score=221.01 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=111.9
Q ss_pred eEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE----------EEcCCC-----
Q 038101 169 GLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM----------IVDTSS----- 231 (660)
Q Consensus 169 ~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~----------~Vdq~~----- 231 (660)
+++++|+... ..+..+ +.+|++++|+||||||||||||+|+|++.|+.|. |. ++....
T Consensus 82 ~~~~~Y~~~~----~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~-i~~~~~~~~~~~~~~g~~~~~~~ 156 (608)
T 3j16_B 82 HVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR-FDDPPEWQEIIKYFRGSELQNYF 156 (608)
T ss_dssp TEEEECSTTS----CEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSSCHHHHHHHTTTSTHHHHH
T ss_pred CeEEEECCCc----eeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce-EecccchhhhhheecChhhhhhh
Confidence 4678887541 234443 8899999999999999999999999999998774 20 010000
Q ss_pred ------ccc------cCCCC------------------------------CCCCCCc--cccCCCCCHHHHHHHHHHHHH
Q 038101 232 ------EIG------GNGDI------------------------------PHPGIGN--ARRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 232 ------eIa------~~~~i------------------------------p~~~Lg~--~rrl~vLSgG~qqrv~IA~aL 267 (660)
.+. ....+ ...++.. .+.+..||+|||||++||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp HHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence 000 00000 0012221 256789999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~ 322 (660)
+++|++||+||||++||+..+..+ .+.|.|||++||+++++..+||+++++..|.
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999987664 3569999999999999999999999998654
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.6e-21 Score=217.93 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=108.6
Q ss_pred eEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE---------EEcCCC------
Q 038101 169 GLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVM---------IVDTSS------ 231 (660)
Q Consensus 169 ~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~---------~Vdq~~------ 231 (660)
+.+-|||..- -.|..+ +++|++++|+||||||||||||+|+|++.|+.|.-.. .+....
T Consensus 4 ~~~~~~~~~~----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVNG----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTTS----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCCc----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3566787641 123334 7899999999999999999999999999988663100 000000
Q ss_pred -----c------cccCCCCC-------------------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 232 -----E------IGGNGDIP-------------------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 232 -----e------Ia~~~~ip-------------------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
. +......+ ..++.. .+.+..||+|||||++||+|++++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i 159 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV 159 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 0 00000000 012211 256778999999999999999999999
Q ss_pred EEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 274 IVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G 321 (660)
|||||||++||+..+..+ ...|.|||+++|+++++..+||+++++..|
T Consensus 160 lllDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 160 YIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999987665 123999999999999999999999998764
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=1.8e-21 Score=236.21 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=126.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------ 221 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------ 221 (660)
..++++||+++|+.. ....+|+++ +++|+.++|+||||||||||+++|+|++.|+.|
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHT
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHH
Confidence 358999999999753 112578888 999999999999999999999999999988733
Q ss_pred CeEEEEcCCCccccC-------CCCCCC--------------C-------CC--cc----ccCCCCCHHHHHHHHHHHHH
Q 038101 222 KRVMIVDTSSEIGGN-------GDIPHP--------------G-------IG--NA----RRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 222 krV~~Vdq~~eIa~~-------~~ip~~--------------~-------Lg--~~----rrl~vLSgG~qqrv~IA~aL 267 (660)
+++++|+|...+... ...+.. + +. -. .+-..||||||||++||||+
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 358888887643210 000000 0 00 00 12246999999999999999
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+.+|+||||||||++||+.+...+ ...|.|+|++||+++.+. .||+++++.+|++...+
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEEC
Confidence 999999999999999999987765 246899999999999875 59999999999997754
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=1.6e-21 Score=230.17 Aligned_cols=156 Identities=15% Similarity=0.199 Sum_probs=122.5
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHh-ccc--c-CCCCeEEEEcCCC-c-cc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIAR-VLA--N-DYKKRVMIVDTSS-E-IG 234 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~Iag-lL~--p-~~GkrV~~Vdq~~-e-Ia 234 (660)
.+...|++++||+. .+|+++ +.+|++++|+||||||||||||+|+| .+. + ....+++|+++.. . ..
T Consensus 435 ~L~~~~ls~~yg~~-----~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~ 509 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK-----ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHS 509 (986)
T ss_dssp EEEEEEEEEEETTE-----EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCT
T ss_pred eeEEeeEEEEECCE-----EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccccccccc
Confidence 45667999999876 788887 89999999999999999999999984 321 0 0112467776542 1 11
Q ss_pred cC--------C--C--------CCCCCCCc---cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--
Q 038101 235 GN--------G--D--------IPHPGIGN---ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-- 291 (660)
Q Consensus 235 ~~--------~--~--------ip~~~Lg~---~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-- 291 (660)
.. . + +...++.. .+++..||+|||||++||++++++|++|||||||++||+.++..+
T Consensus 510 ~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~ 589 (986)
T 2iw3_A 510 DTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN 589 (986)
T ss_dssp TSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 00 0 0 01124421 256788999999999999999999999999999999999998776
Q ss_pred --HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 292 --AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 292 --~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
.+.|.|||++||+.+++..+||+++.+..|++.
T Consensus 590 ~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 590 YLNTCGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 347999999999999999999999999999985
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=7.3e-22 Score=233.00 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=70.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
+++..||||||||++||++++++|++|||||||++||+.+...+ .+.|.+||++||+.+++..+||+++.+.+|++
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 35678999999999999999999999999999999999997776 45588999999999999999999999999986
Q ss_pred E
Q 038101 324 Q 324 (660)
Q Consensus 324 ~ 324 (660)
.
T Consensus 977 v 977 (986)
T 2iw3_A 977 T 977 (986)
T ss_dssp C
T ss_pred E
Confidence 4
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.85 E-value=4e-21 Score=233.16 Aligned_cols=162 Identities=14% Similarity=0.213 Sum_probs=126.8
Q ss_pred ceEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-----------------
Q 038101 163 RKGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK----------------- 222 (660)
Q Consensus 163 ~~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk----------------- 222 (660)
..++++|++++|+.. ....+|+++ +++|+.++|+||||||||||+++|+|++.|+.|.
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r 463 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHH
Confidence 358999999999742 112588988 9999999999999999999999999999987442
Q ss_pred -eEEEEcCCCccccC----------CCCCC------------------C--CCCc--cccCCCCCHHHHHHHHHHHHHcc
Q 038101 223 -RVMIVDTSSEIGGN----------GDIPH------------------P--GIGN--ARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 223 -rV~~Vdq~~eIa~~----------~~ip~------------------~--~Lg~--~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
+|++|+|...+... ..... . ++.. ..+...||||||||++||||++.
T Consensus 464 ~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 464 EIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred hheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 48888887643210 00000 0 0000 02335799999999999999999
Q ss_pred CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEe
Q 038101 270 MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVT 327 (660)
Q Consensus 270 ~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~ 327 (660)
+|+||||||||++||+.....+ ...|.|+|++||+.+.+.. ||+++++.+|++.+.+
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 9999999999999999986655 3469999999999998865 9999999999986544
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.84 E-value=5.7e-21 Score=232.38 Aligned_cols=170 Identities=17% Similarity=0.267 Sum_probs=132.6
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC------------------C
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYK------------------K 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G------------------k 222 (660)
.++++||+++|... +...+|+++ |++|+.++|+||+|||||||++.|.|++.|+.| +
T Consensus 1076 ~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred eEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 58899999999642 112589998 999999999999999999999999999998755 3
Q ss_pred eEEEEcCCCccccC-------CCC-C-CC------------CCC---------ccccC----CCCCHHHHHHHHHHHHHc
Q 038101 223 RVMIVDTSSEIGGN-------GDI-P-HP------------GIG---------NARRM----QVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------~~i-p-~~------------~Lg---------~~rrl----~vLSgG~qqrv~IA~aL~ 268 (660)
+|++|+|...+... .+. | .. ++. -...+ ..||+|||||++||||++
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence 68888887654210 011 1 00 110 00112 358999999999999999
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCchhhhcccchHHH
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGDEEAHRRGVQKTV 342 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd~~a~~~Gt~~~I 342 (660)
.+|+||||||||++||+..-..+ ...|+|+|+++|.++.+. .||+|++|++|+|.+.+ +.+++
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~G----------th~eL 1302 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKG----------THTQL 1302 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEE----------CHHHH
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEEC----------CHHHH
Confidence 99999999999999999986665 236899999999998764 59999999999997754 67777
Q ss_pred Hhhc
Q 038101 343 LERK 346 (660)
Q Consensus 343 ler~ 346 (660)
+.+.
T Consensus 1303 l~~~ 1306 (1321)
T 4f4c_A 1303 MSEK 1306 (1321)
T ss_dssp HHCC
T ss_pred HhCC
Confidence 7654
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=9.5e-21 Score=215.56 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=69.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMPQ--VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P~--VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+++..||+|||||++||+|++++|+ +||+||||++||+..+..+ ++.|.|||++||+++++. .||+++.+
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l 276 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDI 276 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEe
Confidence 4567899999999999999999998 9999999999999887665 457999999999999876 59999999
Q ss_pred ------EcCeEEEEe
Q 038101 319 ------LIGGVQNVT 327 (660)
Q Consensus 319 ------~~G~I~~V~ 327 (660)
..|++...+
T Consensus 277 ~~g~~~~~G~i~~~g 291 (670)
T 3ux8_A 277 GPGAGIHGGEVVAAG 291 (670)
T ss_dssp CSSSGGGCCSEEEEE
T ss_pred cccccccCCEEEEec
Confidence 788887654
No 58
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=2.4e-20 Score=226.88 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=128.1
Q ss_pred eEEEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------ 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------ 222 (660)
.++++|++++|+.. ....+|+++ +++|+.++|+||+|||||||++.|.|++.|..|.
T Consensus 415 ~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 415 DITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred cEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhh
Confidence 58899999999642 112688988 9999999999999999999999999999987542
Q ss_pred eEEEEcCCCccccC-------CCCCCC------------CC---------Cccc----cCCCCCHHHHHHHHHHHHHccC
Q 038101 223 RVMIVDTSSEIGGN-------GDIPHP------------GI---------GNAR----RMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 223 rV~~Vdq~~eIa~~-------~~ip~~------------~L---------g~~r----rl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+|+||+|...+... .+-+.. ++ |... +=..||||||||++||||++.+
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~ 572 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTC
T ss_pred cccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccC
Confidence 58899887654210 011110 00 1011 2236999999999999999999
Q ss_pred CcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEEEcCeEEEEecCc
Q 038101 271 PQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEMLIGGVQNVTLGD 330 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l~~G~I~~V~lgd 330 (660)
|++|||||||++||+.....+ ..+|.|+|++||..+.+. .||+|+++.+|+|...+..+
T Consensus 573 ~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHH
Confidence 999999999999999875544 246999999999999774 69999999999998876433
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=7.7e-19 Score=199.91 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+++..||+|||||++||+|++++| ++||+||||++||+.....+ .+.|.|||++||+++++ ..||+++.
T Consensus 539 ~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~ 617 (670)
T 3ux8_A 539 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIID 617 (670)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE
T ss_pred CCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEE
Confidence 456789999999999999999887 59999999999999987665 45699999999999987 46999999
Q ss_pred E------EcCeEEEEe
Q 038101 318 M------LIGGVQNVT 327 (660)
Q Consensus 318 l------~~G~I~~V~ 327 (660)
| ..|++...+
T Consensus 618 l~~~~g~~~G~i~~~g 633 (670)
T 3ux8_A 618 LGPEGGDRGGQIVAVG 633 (670)
T ss_dssp EESSSGGGCCEEEEEE
T ss_pred ecCCcCCCCCEEEEec
Confidence 9 789987644
No 60
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.74 E-value=1.8e-18 Score=164.11 Aligned_cols=121 Identities=12% Similarity=0.130 Sum_probs=81.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHH------------HHHhccccCCCCeEEEEcC-CCcccc-CCCCCCCCCC-ccccCCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIR------------EIARVLANDYKKRVMIVDT-SSEIGG-NGDIPHPGIG-NARRMQVP 253 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR------------~IaglL~p~~GkrV~~Vdq-~~eIa~-~~~ip~~~Lg-~~rrl~vL 253 (660)
+.+|++++|+||||||||||+| .+.|++.++.+... +... ..++.. ....-..+.. ........
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQT-VTGAAFDVLHYIVSKRLQLGKLTVVDATNVQ 84 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGG-GHHHHHHHHHHHHHHHHHTTCCEEEESCCCS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHhCCCeEEEECCCCC
Confidence 6789999999999999999999 66666655433200 0000 000000 0000000000 01123445
Q ss_pred CHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH----------------HHHHH-------HhcCCEEEEEEcChhHHHH
Q 038101 254 NSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM----------------AASTI-------AQRGIQLVATAHGVTIENL 310 (660)
Q Consensus 254 SgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~----------------a~~~i-------~~~GvtVI~TtH~~~l~~~ 310 (660)
|+|+|||++||++++.+|++|++|||+++||+. ....+ .+.|+++|++||+++++..
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 899999999999999999999999999999998 33433 4569999999999998765
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.74 E-value=8.6e-18 Score=196.27 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=69.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHccC---CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHM---PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~---P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+.+..||+|||||+.||++++++ |+||||||||++||+.++..+ .+.|.|||+++|+++++ ..||+++.
T Consensus 726 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~ 804 (842)
T 2vf7_A 726 QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLD 804 (842)
T ss_dssp CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE
Confidence 34567999999999999999996 799999999999999997765 46799999999999998 68999999
Q ss_pred E------EcCeEEEEe
Q 038101 318 M------LIGGVQNVT 327 (660)
Q Consensus 318 l------~~G~I~~V~ 327 (660)
| ..|++...+
T Consensus 805 L~p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQG 820 (842)
T ss_dssp ECSSSGGGCCSEEEEE
T ss_pred ECCCCCCCCCEEEEEc
Confidence 9 578876543
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.72 E-value=2e-17 Score=175.89 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH----H--hcCCEEEEEEcChhHHHHhcCcEEEE----Ec
Q 038101 253 PNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI----A--QRGIQLVATAHGVTIENLIMNPSLEM----LI 320 (660)
Q Consensus 253 LSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i----~--~~GvtVI~TtH~~~l~~~i~dril~l----~~ 320 (660)
+|+|||||++||++++.+| ++||||||+++||+..+..+ . ..|.|||++||+..++. +||+++.+ .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 6999999999999999999 99999999999999998776 1 24899999999998774 79999999 88
Q ss_pred CeEEE
Q 038101 321 GGVQN 325 (660)
Q Consensus 321 G~I~~ 325 (660)
|++..
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 88643
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.2e-18 Score=191.42 Aligned_cols=135 Identities=13% Similarity=0.127 Sum_probs=100.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeE----------EEEcCCCcccc-C-----C-C-CC---------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-KRV----------MIVDTSSEIGG-N-----G-D-IP--------- 240 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-krV----------~~Vdq~~eIa~-~-----~-~-ip--------- 240 (660)
+++|++++|+||||||||||+|+|+|++.++.| +-| +++++...... . . . +.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~ 214 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATL 214 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCS
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcch
Confidence 889999999999999999999999999988766 412 22222210000 0 0 0 00
Q ss_pred ---------CCCCCccccCCCCCHHHHHHHHHHHH--HccCCcE----EEEeC-CCCCccHHHHHHH----HhcCCEEEE
Q 038101 241 ---------HPGIGNARRMQVPNSEMQHKVLIEAV--ENHMPQV----IVIDE-IGTKLEAMAASTI----AQRGIQLVA 300 (660)
Q Consensus 241 ---------~~~Lg~~rrl~vLSgG~qqrv~IA~a--L~~~P~V----LILDE-PgsgLD~~a~~~i----~~~GvtVI~ 300 (660)
..++........||+|||||+++|++ ++.+|++ ||||| |+++||+. ...+ .+.|+++|+
T Consensus 215 ~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tvii 293 (460)
T 2npi_A 215 LHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIML 293 (460)
T ss_dssp SCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEE
Confidence 01111111234689999999999999 9999999 99999 99999987 4333 456899999
Q ss_pred EEcChh------HHHHhcCc-----EEEEE-cCeEE
Q 038101 301 TAHGVT------IENLIMNP-----SLEML-IGGVQ 324 (660)
Q Consensus 301 TtH~~~------l~~~i~dr-----il~l~-~G~I~ 324 (660)
++|+.. ++..+||+ ++.+. .|++.
T Consensus 294 Vth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 294 VLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp EECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred EEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 999988 77789999 99998 89875
No 64
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.71 E-value=7.8e-17 Score=189.66 Aligned_cols=78 Identities=9% Similarity=0.143 Sum_probs=68.1
Q ss_pred cCCCCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 249 RMQVPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+...||||||||++||++++++| ++|||||||++||+.....+ .+.|.|||+++|+++++. .||+++.|
T Consensus 802 ~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADrIivL 880 (916)
T 3pih_A 802 PATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADHIIDL 880 (916)
T ss_dssp CSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEE
T ss_pred CccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEe
Confidence 45689999999999999999875 79999999999999987765 457999999999999875 59999999
Q ss_pred ------EcCeEEEEe
Q 038101 319 ------LIGGVQNVT 327 (660)
Q Consensus 319 ------~~G~I~~V~ 327 (660)
..|++.+.+
T Consensus 881 gp~gg~~~G~Iv~~G 895 (916)
T 3pih_A 881 GPEGGKEGGYIVATG 895 (916)
T ss_dssp ESSSGGGCCEEEEEE
T ss_pred cCCCCCCCCEEEEEc
Confidence 778886643
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.71 E-value=1.2e-17 Score=161.09 Aligned_cols=128 Identities=19% Similarity=0.139 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccC-C------------CCeEEEEcCCCccccCCCCCCCCCC----ccccCCCCCHH
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLAND-Y------------KKRVMIVDTSSEIGGNGDIPHPGIG----NARRMQVPNSE 256 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~-~------------GkrV~~Vdq~~eIa~~~~ip~~~Lg----~~rrl~vLSgG 256 (660)
.++|+||||||||||+++|+|++... . +++++|+.+..... ...+...+.. ..++...+|+|
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lSgG 80 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK-KKIFSSKFFTSKKLVGSYGVNVQYF 80 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCC-EEEEEETTCCCSSEETTEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHH-HHHHHhhcCCccccccccccCcCHH
Confidence 68999999999999999999997421 0 12233333221000 0000000000 12345679999
Q ss_pred HHHHHHHHHH-----HccCCcEEEEeC--CCCCccHHHHHHH----HhcCCEEEEEEc---ChhHHHHhcCcEEEEEcCe
Q 038101 257 MQHKVLIEAV-----ENHMPQVIVIDE--IGTKLEAMAASTI----AQRGIQLVATAH---GVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 257 ~qqrv~IA~a-----L~~~P~VLILDE--PgsgLD~~a~~~i----~~~GvtVI~TtH---~~~l~~~i~dril~l~~G~ 322 (660)
||||+.||++ ++.+|++||+|| |++++|+.....+ .+.+.++|+++| +..++..+|++. .|+
T Consensus 81 ~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~----~~~ 156 (178)
T 1ye8_A 81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP----GAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCT----TCE
T ss_pred HHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcC----CcE
Confidence 9999999996 999999999999 9999999987776 345777888884 888999999882 455
Q ss_pred EEEE
Q 038101 323 VQNV 326 (660)
Q Consensus 323 I~~V 326 (660)
+..+
T Consensus 157 i~~~ 160 (178)
T 1ye8_A 157 LIEL 160 (178)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 5443
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.70 E-value=2e-17 Score=176.05 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=67.1
Q ss_pred cCCCCCHHHHHHHHHHHHHc------cCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcE
Q 038101 249 RMQVPNSEMQHKVLIEAVEN------HMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPS 315 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~------~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dri 315 (660)
.+..||+|||||++||+|++ ++|++|||||||++||+.....+ .+.|.|||++||++++ ...||++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~ 354 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRK 354 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEE
Confidence 45679999999999999999 79999999999999999998765 3569999999999998 5679999
Q ss_pred EEEEcCeEE
Q 038101 316 LEMLIGGVQ 324 (660)
Q Consensus 316 l~l~~G~I~ 324 (660)
+.+..|++.
T Consensus 355 ~~l~~G~i~ 363 (365)
T 3qf7_A 355 LRITGGVVV 363 (365)
T ss_dssp EEEETTEEC
T ss_pred EEEECCEEE
Confidence 999999874
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.70 E-value=1.2e-16 Score=188.06 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=68.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+.+..||+|||||+.||++++++| ++|||||||+|||+.++..+ .+.|.|||+++|+++++ ..||+++.
T Consensus 841 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIiv 919 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIID 919 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE
Confidence 345679999999999999999875 99999999999999997775 45799999999999987 47999999
Q ss_pred E------EcCeEEEEe
Q 038101 318 M------LIGGVQNVT 327 (660)
Q Consensus 318 l------~~G~I~~V~ 327 (660)
| ..|++...+
T Consensus 920 L~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 920 LGPEGGDRGGQIVAVG 935 (972)
T ss_dssp ECSSSTTSCCSEEEEE
T ss_pred EcCCCCCCCCEEEEec
Confidence 9 578876543
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.69 E-value=1.4e-16 Score=187.94 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=67.3
Q ss_pred cCCCCCHHHHHHHHHHHHHccCC---cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 249 RMQVPNSEMQHKVLIEAVENHMP---QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~~~P---~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
.+..||+|||||++||++++++| ++|||||||++||+.++..+ .+.|.|||+++|+++++ ..||+++.|
T Consensus 860 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL 938 (993)
T 2ygr_A 860 PAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTSDWIIDL 938 (993)
T ss_dssp CGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence 45679999999999999999875 99999999999999987765 35799999999999987 579999999
Q ss_pred ------EcCeEEEE
Q 038101 319 ------LIGGVQNV 326 (660)
Q Consensus 319 ------~~G~I~~V 326 (660)
..|++...
T Consensus 939 ~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 939 GPEGGAGGGTVVAQ 952 (993)
T ss_dssp ESSSTTSCSEEEEE
T ss_pred CCCcCCCCCEEEEe
Confidence 57887653
No 69
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.64 E-value=4.3e-17 Score=171.54 Aligned_cols=214 Identities=14% Similarity=0.195 Sum_probs=131.0
Q ss_pred ccceeehhhhCCCccEEecCCCCc-ccccC---cCCHHHHHHHHhhhcCCCCC-----ccceeec---cceeeccccCce
Q 038101 97 LYELIEVVMDLGRKPLARFPSGDF-SLSDC---QITVHHIEHATSQVGDFAVD-----NRAGISR---TLHRISAIRNRK 164 (660)
Q Consensus 97 ~~~l~EI~Ld~gR~~~arf~~~~~-~l~~~---~vt~eDl~~~~~~lg~fs~d-----~R~GI~r---tlhRIs~irn~~ 164 (660)
...+.||.+..+.++.+...++.+ ..... .+|..++...+..+..+.+. ...-+.. ...||..+.+..
T Consensus 42 d~~v~dI~in~~~~v~v~~~g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ri~~~l~~p 121 (330)
T 2pt7_A 42 MENITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPV 121 (330)
T ss_dssp SSSEEEEEECSSSEEEEEETTSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTCCCCSSSCCEEEEECTTSCEEEEECTTT
T ss_pred CCCCeEEEEcCCCEEEEEECCceEEEecCCcccCCCHHHHHHHHHHHHHHhCCCCCCCCCeeEEEEcCCCcEEEEEEcCC
Confidence 356889999887766666555423 33333 68888988777766544321 1112221 235666654110
Q ss_pred EEE---EeEEEEEC-c-ccc-------c-ccc------ccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 038101 165 GAI---IGLTCRVG-R-AVS-------G-SAN------LLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222 (660)
Q Consensus 165 LeI---~~Lt~ryg-r-~v~-------G-~a~------iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk 222 (660)
..- ..++.+.. . .+. | ... +++++ +.+|++++|+||||||||||+++|+|++.++.|
T Consensus 122 ~~~~~~~~~~ir~~~~~~i~l~~l~~~g~~~~v~fy~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g- 200 (330)
T 2pt7_A 122 TVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER- 200 (330)
T ss_dssp SSSTTCCEEEEECCCCCCCCHHHHHHTTTTTTSTTHHHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC-
T ss_pred ccCCCCceEEEeCCCCCCCCHHHHHhCCCcCchhhHHHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-
Confidence 000 01223311 1 100 0 000 45555 789999999999999999999999999998755
Q ss_pred eEEEEcCCCccccCCCCCCCCCCccccCCCC-CHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCC-EEEE
Q 038101 223 RVMIVDTSSEIGGNGDIPHPGIGNARRMQVP-NSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGI-QLVA 300 (660)
Q Consensus 223 rV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vL-SgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gv-tVI~ 300 (660)
.| .++...++. ++. .. ..+... .+|++|+++|++|+.++|++||+|||++..-...... ...|. ++|+
T Consensus 201 ~i-~i~~~~e~~----~~~--~~--~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~-~~~g~~tvi~ 270 (330)
T 2pt7_A 201 II-SIEDTEEIV----FKH--HK--NYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNV-LCSGHKGTLT 270 (330)
T ss_dssp EE-EEESSCCCC----CSS--CS--SEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHH-HHTTCCCEEE
T ss_pred EE-EECCeeccc----ccc--ch--hEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHH-HhcCCCEEEE
Confidence 34 444433432 110 00 011111 1789999999999999999999999998421122222 34554 7999
Q ss_pred EEcChhHHHHhcCcEEEEEcCe
Q 038101 301 TAHGVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 301 TtH~~~l~~~i~dril~l~~G~ 322 (660)
|+|+.+ +...+|+++.+..|.
T Consensus 271 t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 271 TLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp EEECSS-HHHHHHHHHHHHHTS
T ss_pred EEcccH-HHHHhhhheehhcCC
Confidence 999998 566799998777664
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=1.2e-18 Score=172.44 Aligned_cols=123 Identities=18% Similarity=0.200 Sum_probs=76.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE-EcCC-Cccc-cCCCCCCC---CC---C--------
Q 038101 183 NLLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMI-VDTS-SEIG-GNGDIPHP---GI---G-------- 245 (660)
Q Consensus 183 ~iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~-Vdq~-~eIa-~~~~ip~~---~L---g-------- 245 (660)
.+|++ +.+|++++|+|||||||||||++|+|+ .|+.|.-... +... .... ..+.+++. .+ .
T Consensus 14 ~~l~~-i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~ 91 (208)
T 3b85_A 14 HYVDA-IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALR 91 (208)
T ss_dssp HHHHH-HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHT
T ss_pred HHHHh-ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHH
Confidence 56777 488999999999999999999999999 8876642110 1100 0110 01112211 11 0
Q ss_pred ---cccc----CCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-H--hcCCEEEEEEcChhHHHH
Q 038101 246 ---NARR----MQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-A--QRGIQLVATAHGVTIENL 310 (660)
Q Consensus 246 ---~~rr----l~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-~--~~GvtVI~TtH~~~l~~~ 310 (660)
...+ +.. ..|||||++||+|++++|++|||||||++ -......+ . +.|.+|| +||+.++++.
T Consensus 92 ~~~~~~~~~~~l~~-glGq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 92 DMVEPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp TTSCTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred HhccHHHHHHHHHh-CCchHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 0000 011 33999999999999999999999999999 33333332 2 3589999 9999987653
No 71
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=1.8e-16 Score=168.92 Aligned_cols=208 Identities=13% Similarity=0.188 Sum_probs=129.0
Q ss_pred eehhhhCCCccEEecCCCCcccccCcCCHHHHHHHHhhhcCC------C----CCccceeecc-ceeeccccCceEEEEe
Q 038101 101 IEVVMDLGRKPLARFPSGDFSLSDCQITVHHIEHATSQVGDF------A----VDNRAGISRT-LHRISAIRNRKGAIIG 169 (660)
Q Consensus 101 ~EI~Ld~gR~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~f------s----~d~R~GI~rt-lhRIs~irn~~LeI~~ 169 (660)
-.|-+..|.++..+..+.-..+...+.+.+++...+..+-.- . -|.+..+.+. -.|++.+.... =.+
T Consensus 16 SDIhi~~~~~~~~ri~G~l~~~~~~~~~~~~l~~~i~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~~--g~~ 93 (356)
T 3jvv_A 16 SDLHLSAGLPPMIRVDGDVRRINLPPLEHKQVHALIYDIMNDKQRKDFEEFLETDFSFEVPGVARFRVNAFNQNR--GAG 93 (356)
T ss_dssp SEEEEETTBCCEEEETTEEEECSSCCBCHHHHHHHHHHHCCHHHHHHHHHHSCEEEEEEETTTEEEEEEEEEETT--EEE
T ss_pred ceEEEECCCCEEEEECCEEEEecCCCCCHHHHHHHHHHHhcHhhhhhhhhcCCeeEEEEcCCCcEEEEEEEeeCC--CcE
Confidence 345566788888887654444555578888888887644221 0 1111112211 12455443322 246
Q ss_pred EEEEECccc------cccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCC---CC
Q 038101 170 LTCRVGRAV------SGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNG---DI 239 (660)
Q Consensus 170 Lt~rygr~v------~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~---~i 239 (660)
+++|+-... .|...+++++ ..+|++++|+|||||||||||++|+|++.++.+..|..+.+..++.... .+
T Consensus 94 ~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v 173 (356)
T 3jvv_A 94 AVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLV 173 (356)
T ss_dssp EEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEE
T ss_pred EEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccce
Confidence 677763321 1122234444 5678899999999999999999999999887566777776665542111 01
Q ss_pred CCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHHHhcCcEEEEE
Q 038101 240 PHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIENLIMNPSLEML 319 (660)
Q Consensus 240 p~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~~i~dril~l~ 319 (660)
++..++ ....+- .-+|++++.++|++|++|||+..........+++.|.+||+|+|+.+.+ ..+++++.+.
T Consensus 174 ~q~~~~----~~~~~~----~~~La~aL~~~PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~-~~~dRli~l~ 244 (356)
T 3jvv_A 174 NQREVH----RDTLGF----SEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA-KTIDRVVDVF 244 (356)
T ss_dssp EEEEBT----TTBSCH----HHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred eeeeec----cccCCH----HHHHHHHhhhCcCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH-HHHHHHhhhc
Confidence 111111 111222 2389999999999999999994332233344578899999999999987 5688886653
No 72
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.56 E-value=1.6e-15 Score=168.13 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=100.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE-EEEcCCCc--cc---cCCCCC-----CCCCCc--cccCCCCCH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRV-MIVDTSSE--IG---GNGDIP-----HPGIGN--ARRMQVPNS 255 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV-~~Vdq~~e--Ia---~~~~ip-----~~~Lg~--~rrl~vLSg 255 (660)
+.+|++++|+||||||||||++.+++...+. |.++ .+..+... +. ...++. ..++.. ......+|+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 7899999999999999999999999998875 5555 44444331 10 000111 011111 123456899
Q ss_pred HHHHHHHHHHHHccCCcEEEEeCCCCCccHH-----HHHHH-------HhcCCEEEEEEcCh----------hHHHHhcC
Q 038101 256 EMQHKVLIEAVENHMPQVIVIDEIGTKLEAM-----AASTI-------AQRGIQLVATAHGV----------TIENLIMN 313 (660)
Q Consensus 256 G~qqrv~IA~aL~~~P~VLILDEPgsgLD~~-----a~~~i-------~~~GvtVI~TtH~~----------~l~~~i~d 313 (660)
|++|++++++++..+|++||+| |+++||.. .+..+ ++.|+++|+++|+. ..+..+||
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D 435 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITD 435 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeee
Confidence 9999999999999999999999 99999988 55543 56799999999998 66778899
Q ss_pred cEEEEEcCe
Q 038101 314 PSLEMLIGG 322 (660)
Q Consensus 314 ril~l~~G~ 322 (660)
.++.+..|+
T Consensus 436 ~vi~L~~ge 444 (525)
T 1tf7_A 436 TIILLQYVE 444 (525)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999988775
No 73
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.54 E-value=4.2e-14 Score=147.21 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=62.7
Q ss_pred cCCCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcE--E
Q 038101 249 RMQVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPS--L 316 (660)
Q Consensus 249 rl~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dri--l 316 (660)
++..+|+||||+++||++++ .+|++||+|||+++||+.....+ ...|.+||++||+... ..+||++ +
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~~~~v 294 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADLLHGV 294 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCceEEEE
Confidence 34579999999999999997 67899999999999999987765 2348999999999764 4579986 7
Q ss_pred EEEcCeEEEE
Q 038101 317 EMLIGGVQNV 326 (660)
Q Consensus 317 ~l~~G~I~~V 326 (660)
.+.+|....+
T Consensus 295 ~~~~g~s~~~ 304 (322)
T 1e69_A 295 TMVNGVSAIV 304 (322)
T ss_dssp EESSSCEEEE
T ss_pred EEeCCEEEEE
Confidence 7777765443
No 74
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.54 E-value=2e-14 Score=146.49 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=91.8
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---cc----c-CCCCCC----------
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE---IG----G-NGDIPH---------- 241 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e---Ia----~-~~~ip~---------- 241 (660)
..|+++ +.+|++++|+||||||||||++.|++.+.+..|..|.|+..... +. . ..+++.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~ 102 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 102 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCC
Confidence 345555 89999999999999999999999999998876767877754321 10 0 001110
Q ss_pred ----------------CCCCccccCCCCCHHH-HHHHHHHHHHccCCcEEEEeCCCC---C---ccH-HHHHHH------
Q 038101 242 ----------------PGIGNARRMQVPNSEM-QHKVLIEAVENHMPQVIVIDEIGT---K---LEA-MAASTI------ 291 (660)
Q Consensus 242 ----------------~~Lg~~rrl~vLSgG~-qqrv~IA~aL~~~P~VLILDEPgs---g---LD~-~a~~~i------ 291 (660)
..+........++.++ ++++. ++++.++|++||+|||+. + +|. .....+
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~ 181 (296)
T 1cr0_A 103 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKG 181 (296)
T ss_dssp HHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 0111001113466666 56666 888999999999999999 4 444 332322
Q ss_pred --HhcCCEEEEEEcCh--h--------------------HHHHhcCcEEEEEcCe
Q 038101 292 --AQRGIQLVATAHGV--T--------------------IENLIMNPSLEMLIGG 322 (660)
Q Consensus 292 --~~~GvtVI~TtH~~--~--------------------l~~~i~dril~l~~G~ 322 (660)
.+.|++||+++|.. + .+..+||.++.+..|+
T Consensus 182 la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 182 FAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp HHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred HHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 34699999999995 3 5667899998887775
No 75
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.54 E-value=6.4e-15 Score=144.10 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=81.6
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHH--hccccCCCCeEEEEcCCCcc-------ccCCCCCC-------C---CC
Q 038101 184 LLQDLVQDGASLLFIGPPGVGKTTIIREIA--RVLANDYKKRVMIVDTSSEI-------GGNGDIPH-------P---GI 244 (660)
Q Consensus 184 iL~dlI~~Ge~ilIlGPnGsGKTTLLR~Ia--glL~p~~GkrV~~Vdq~~eI-------a~~~~ip~-------~---~L 244 (660)
++.+-+.+|++++|+||||||||||+++|+ +++.+. ..+.++...... ...+..++ . +.
T Consensus 22 ~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 99 (251)
T 2ehv_A 22 LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp GTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred HhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEc
Confidence 344448899999999999999999999999 553433 234444432210 00010000 0 00
Q ss_pred -Cc---------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc-----HHHHHH-------HHhcCCEEEEEE
Q 038101 245 -GN---------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE-----AMAAST-------IAQRGIQLVATA 302 (660)
Q Consensus 245 -g~---------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD-----~~a~~~-------i~~~GvtVI~Tt 302 (660)
.. .......+.++........+..++|++|++|||++++| ...+.. +++.|+|||+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vt 179 (251)
T 2ehv_A 100 VSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTT 179 (251)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred cccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 00 00111223344444555555678999999999999987 343332 256799999999
Q ss_pred cChhHH---------HHhc-CcEEEEE
Q 038101 303 HGVTIE---------NLIM-NPSLEML 319 (660)
Q Consensus 303 H~~~l~---------~~i~-dril~l~ 319 (660)
|+...+ ..+| |+++.+.
T Consensus 180 H~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 180 EAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCCCCcccccccChhhEeeeEEEEEe
Confidence 999887 5777 9999885
No 76
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.53 E-value=7.9e-15 Score=149.62 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=87.6
Q ss_pred cccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCCccccCCCCCCCCCCc--cccCCCCCHHHH
Q 038101 183 NLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSSEIGGNGDIPHPGIGN--ARRMQVPNSEMQ 258 (660)
Q Consensus 183 ~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~~eIa~~~~ip~~~Lg~--~rrl~vLSgG~q 258 (660)
.+|+++ +.+|++++|+||||||||||+++|+|++.++ .| +|.+....-+. +++..... ...+. +.. ..
T Consensus 15 ~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G-~I~~~g~~i~~-----~~~~~~~~v~q~~~g-l~~-~~ 86 (261)
T 2eyu_A 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEY-----VFKHKKSIVNQREVG-EDT-KS 86 (261)
T ss_dssp THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC-EEEEEESSCCS-----CCCCSSSEEEEEEBT-TTB-SC
T ss_pred HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC-EEEEcCCccee-----ecCCcceeeeHHHhC-CCH-HH
Confidence 456666 8999999999999999999999999999876 55 56555543221 11110000 00110 000 12
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH---HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 259 HKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI---AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 259 qrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i---~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
.+++|++++.++|++|++|||+ |+.....+ ++.|.+|++++|+.+. ...+++++.+
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~~-~~~~dri~~l 145 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNTA-IDTIHRIVDI 145 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSSH-HHHHHHHHHT
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcchH-HHHHHHHhhh
Confidence 3799999999999999999999 77765443 4679999999999884 5678887554
No 77
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.52 E-value=8.4e-15 Score=174.45 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=101.0
Q ss_pred ceEEEEe-----EEEEE-Cccccccccccccc---ccC-------CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEE-
Q 038101 163 RKGAIIG-----LTCRV-GRAVSGSANLLQDL---VQD-------GASLLFIGPPGVGKTTIIREIARVLANDYKKRVM- 225 (660)
Q Consensus 163 ~~LeI~~-----Lt~ry-gr~v~G~a~iL~dl---I~~-------Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~- 225 (660)
..+++++ |++.| ++. .++.++ +.. |++++|+||||+|||||||.| |++... .++|
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~-----~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--aqiG~ 820 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDD-----FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--AQMGC 820 (1022)
T ss_dssp CCEEEEEECCCC------CCC-----CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--HTTTC
T ss_pred ceEEEEeccccEEEEEecCCc-----eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--hheeE
Confidence 3588999 99988 443 577877 455 899999999999999999999 887653 1233
Q ss_pred EEcCCCc-cccCCC-CCCCCCCcc--ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH--------HHh
Q 038101 226 IVDTSSE-IGGNGD-IPHPGIGNA--RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST--------IAQ 293 (660)
Q Consensus 226 ~Vdq~~e-Ia~~~~-ip~~~Lg~~--rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~--------i~~ 293 (660)
||++... +..... +...++... .....++++|++ ++++++++.+|.+|||||||+|+|+..... +.+
T Consensus 821 ~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 821 YVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp CEESSEEEECCCSBEEEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred EeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 6666431 110000 011122111 122345666664 899999999999999999999999876322 244
Q ss_pred c-CCEEEEEEcChhHHHHhcCcEEEEEcCeEE
Q 038101 294 R-GIQLVATAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 294 ~-GvtVI~TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
. |.++|++||+.+++..+++++.++ +|++.
T Consensus 900 ~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 900 TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred cCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 4 999999999999999999987765 46654
No 78
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.51 E-value=2.3e-14 Score=169.22 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=91.9
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHH--------HhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCC
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREI--------ARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQ 251 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~I--------aglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~ 251 (660)
.++.++ +..|++++|+||||||||||||.| +|...|..+..+++++. + +...++.. ....
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~---i-----~~~ig~~d-~l~~ 720 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDC---I-----LARVGAGD-SQLK 720 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSE---E-----EEECC--------
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHH---H-----HHhcCchh-hHHH
Confidence 355666 677899999999999999999999 44443332222222221 1 11112211 1234
Q ss_pred CCCHHHHHHHHHHHHH--ccCCcEEEEeCCCCCccHHHHHHH--------Hh-cCCEEEEEEcChhHHHHhcCcEEEEEc
Q 038101 252 VPNSEMQHKVLIEAVE--NHMPQVIVIDEIGTKLEAMAASTI--------AQ-RGIQLVATAHGVTIENLIMNPSLEMLI 320 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL--~~~P~VLILDEPgsgLD~~a~~~i--------~~-~GvtVI~TtH~~~l~~~i~dril~l~~ 320 (660)
.+|.++.++..+++++ +++|++|||||||+|+|+.....+ .+ .|.++|++||+.++. .+++++..+.+
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~n 799 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNN 799 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEe
Confidence 6788888888888888 899999999999999999764332 33 599999999998766 57999888888
Q ss_pred CeEEEE
Q 038101 321 GGVQNV 326 (660)
Q Consensus 321 G~I~~V 326 (660)
|.+...
T Consensus 800 g~v~~~ 805 (934)
T 3thx_A 800 LHVTAL 805 (934)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 887654
No 79
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.48 E-value=1.4e-13 Score=144.29 Aligned_cols=70 Identities=7% Similarity=0.102 Sum_probs=59.1
Q ss_pred cCCCCCHHHHH------HHHHHHHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcE
Q 038101 249 RMQVPNSEMQH------KVLIEAVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPS 315 (660)
Q Consensus 249 rl~vLSgG~qq------rv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dri 315 (660)
.+..+|+|||| ++++|++++.+|++||+|||+++||+..+..+ ...|.+||++||+..+ ..+||++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d~~ 323 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAADHV 323 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCSEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCCEE
Confidence 45679999999 66778888889999999999999999987665 3568899999999765 5689999
Q ss_pred EEEE
Q 038101 316 LEML 319 (660)
Q Consensus 316 l~l~ 319 (660)
+.+.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 80
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.48 E-value=4e-14 Score=136.75 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=80.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCCeEEEEcCCCcccc--CCCC-CCCCCCc-----c-ccCCC
Q 038101 187 DLVQDGASLLFIGPPGVGKTTIIREIARVLAND-----YKKRVMIVDTSSEIGG--NGDI-PHPGIGN-----A-RRMQV 252 (660)
Q Consensus 187 dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~GkrV~~Vdq~~eIa~--~~~i-p~~~Lg~-----~-rrl~v 252 (660)
+-+.+|++++|+||||||||||++.|+|.+.+. .+..+.+++....+.. ...+ ...++.. . .....
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 348899999999999999999999999966542 1235667765432110 0000 0011110 0 01123
Q ss_pred CCHHHHHH-HHHHHHH-------ccCCcEEEEeCCCCCccHH-------H---------HHHH----HhcCCEEEEEEc-
Q 038101 253 PNSEMQHK-VLIEAVE-------NHMPQVIVIDEIGTKLEAM-------A---------ASTI----AQRGIQLVATAH- 303 (660)
Q Consensus 253 LSgG~qqr-v~IA~aL-------~~~P~VLILDEPgsgLD~~-------a---------~~~i----~~~GvtVI~TtH- 303 (660)
.+..+++. +..+..+ .++|++|++|||++.+|+. . ...+ .+.|++||+++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 34443322 2222222 4699999999999998873 1 1111 356999999999
Q ss_pred ---ChhHHHHhcCcEEEEEcCe
Q 038101 304 ---GVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 304 ---~~~l~~~i~dril~l~~G~ 322 (660)
+...+..+||.++.+..|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 5555888899998887653
No 81
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.47 E-value=4.6e-14 Score=135.85 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=89.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc-------cCCCCCC----CCC----------Ccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIG-------GNGDIPH----PGI----------GNA 247 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa-------~~~~ip~----~~L----------g~~ 247 (660)
+.+|++++|+||||||||||++.|++.+.+..+ +|.|+....... ..+..++ ..+ +..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 678999999999999999999999988876534 677776432100 0010000 000 000
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCc--cHHHHHHH--------HhcCCEEEEEEcCh--------hH
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMPQ--VIVIDEIGTKL--EAMAASTI--------AQRGIQLVATAHGV--------TI 307 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P~--VLILDEPgsgL--D~~a~~~i--------~~~GvtVI~TtH~~--------~l 307 (660)
......+.++.++...+.+..++|+ +||+|||++.+ |+.....+ .+.|++||+++|+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~ 178 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFG 178 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------C
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccc
Confidence 0112347888888888888888999 99999999776 87544332 35699999999998 44
Q ss_pred HHHhcCcEEEEEcC
Q 038101 308 ENLIMNPSLEMLIG 321 (660)
Q Consensus 308 ~~~i~dril~l~~G 321 (660)
+..+||.++.+...
T Consensus 179 ~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 179 VEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHCSEEEEEEEE
T ss_pred hheeeeEEEEEEEE
Confidence 77789999888754
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.47 E-value=5.1e-14 Score=146.64 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=92.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-c---------------cccCC-----CCC-------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS-E---------------IGGNG-----DIP------- 240 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~-e---------------Ia~~~-----~ip------- 240 (660)
+.+|++++|+||||||||||++.|+|++.++.| +|.+..... . ++... ..|
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~ 175 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 175 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHH
Confidence 678999999999999999999999999988644 455543221 0 10000 000
Q ss_pred ---------------CCCCCc--cccCCCCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCccHHHHHH-HH-hcCCEEE
Q 038101 241 ---------------HPGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ--VIVIDEIGTKLEAMAAST-IA-QRGIQLV 299 (660)
Q Consensus 241 ---------------~~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~--VLILDEPgsgLD~~a~~~-i~-~~GvtVI 299 (660)
..++.. .+.+..|| +||++|++++.++|+ +|++| ||+++|+..... +. ..|+++|
T Consensus 176 l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~i 251 (302)
T 3b9q_A 176 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGL 251 (302)
T ss_dssp HHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEE
T ss_pred HHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEE
Confidence 001110 01223345 899999999999999 99999 999999987543 43 4699999
Q ss_pred EEEc---------ChhHHHHhcCcEEEEEcCe
Q 038101 300 ATAH---------GVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 300 ~TtH---------~~~l~~~i~dril~l~~G~ 322 (660)
++|| ..+++..++.|+.++-.|.
T Consensus 252 iiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 252 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp EEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred EEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9999 5567777888998888885
No 83
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.44 E-value=1.1e-13 Score=163.13 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=80.8
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--------CCCCeEEEEcCCCccccCCCCCCCCCCc--ccc
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAN--------DYKKRVMIVDTSSEIGGNGDIPHPGIGN--ARR 249 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--------~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~--~rr 249 (660)
.++.++ +++|++++|+||||||||||||.|+++... .....+++++ .+ +...++.. ...
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d---~i-----~~~ig~~d~l~~~ 732 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD---GI-----FTRMGAADNIYKG 732 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---EE-----EEEC---------
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---HH-----HHhCChHHHHHHh
Confidence 455666 678999999999999999999999865321 1111122211 11 11111111 124
Q ss_pred CCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH--------H-hcCCEEEEEEcChhHHH
Q 038101 250 MQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI--------A-QRGIQLVATAHGVTIEN 309 (660)
Q Consensus 250 l~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i--------~-~~GvtVI~TtH~~~l~~ 309 (660)
...+|+||++++.++++ +.+|++|||||||+|+|+.....+ . +.|.++|++||+.+++.
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 46778999999999888 899999999999999999764433 2 36999999999987653
No 84
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.43 E-value=2.2e-15 Score=163.71 Aligned_cols=123 Identities=11% Similarity=0.145 Sum_probs=84.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCC------eE---EEEcCCCccccC--CCCC-----C---------CCCCccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKK------RV---MIVDTSSEIGGN--GDIP-----H---------PGIGNAR 248 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------rV---~~Vdq~~eIa~~--~~ip-----~---------~~Lg~~r 248 (660)
+++|+||||||||||+|+|+|++.++.|. .+ +++.+....... .+.+ . .++....
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~ 150 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence 99999999999999999999999887542 11 333333211000 0001 0 1222111
Q ss_pred cCCCCCHH--HHHHHHHHHHHcc----------CCcEEEEeCCCCCccHHHHHHH-------H-----hcC----CEEEE
Q 038101 249 RMQVPNSE--MQHKVLIEAVENH----------MPQVIVIDEIGTKLEAMAASTI-------A-----QRG----IQLVA 300 (660)
Q Consensus 249 rl~vLSgG--~qqrv~IA~aL~~----------~P~VLILDEPgsgLD~~a~~~i-------~-----~~G----vtVI~ 300 (660)
..-.+|+| |+||+.||+++.+ +|++|++|||+++||+..+..+ . +.| .++++
T Consensus 151 ~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iili 230 (413)
T 1tq4_A 151 FFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLL 230 (413)
T ss_dssp EEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEEC
T ss_pred CeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 11127888 9999999999999 9999999999999999876553 1 223 56888
Q ss_pred EEcChhH--HHHhcCcEE
Q 038101 301 TAHGVTI--ENLIMNPSL 316 (660)
Q Consensus 301 TtH~~~l--~~~i~dril 316 (660)
++|..+. .+.+||.+.
T Consensus 231 Ssh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 231 SNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CTTCTTSTTHHHHHHHHH
T ss_pred ecCcCCccCHHHHHHHHH
Confidence 9998876 777787773
No 85
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.43 E-value=1.3e-15 Score=148.15 Aligned_cols=136 Identities=14% Similarity=0.044 Sum_probs=77.4
Q ss_pred cccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccC------------C--CCeEEEEcCCCcccc----CCCC----
Q 038101 183 NLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLAND------------Y--KKRVMIVDTSSEIGG----NGDI---- 239 (660)
Q Consensus 183 ~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~------------~--GkrV~~Vdq~~eIa~----~~~i---- 239 (660)
.++++. +++|++++|+||||||||||+|+|+|++... . ...++|+++...... ...+
T Consensus 10 ~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~ 89 (207)
T 1znw_A 10 PTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWA 89 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeeh
Confidence 455556 8999999999999999999999999998411 0 112334433321100 0000
Q ss_pred ------CCCCCCcc---ccC---------CCCCHHHHHHHHHHH---HHccCCcEEEEeCCCCCc----cHHHHHHH---
Q 038101 240 ------PHPGIGNA---RRM---------QVPNSEMQHKVLIEA---VENHMPQVIVIDEIGTKL----EAMAASTI--- 291 (660)
Q Consensus 240 ------p~~~Lg~~---rrl---------~vLSgG~qqrv~IA~---aL~~~P~VLILDEPgsgL----D~~a~~~i--- 291 (660)
...++... .++ -...+.+..+-.... +++++|+++++|||++++ |+..+..+
T Consensus 90 ~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~ 169 (207)
T 1znw_A 90 EIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTA 169 (207)
T ss_dssp EEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred hhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 00000000 000 011122222222222 567789999999999887 66555443
Q ss_pred ----H-hcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 292 ----A-QRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 292 ----~-~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
. +.|+++|++||+++++..+||+++++
T Consensus 170 l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l 201 (207)
T 1znw_A 170 RIELAAQGDFDKVVVNRRLESACAELVSLLVG 201 (207)
T ss_dssp HHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred HHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence 2 45899999999999999999998776
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.41 E-value=2.8e-13 Score=144.75 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=92.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc----------cc---cCCCCCC--------------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE----------IG---GNGDIPH-------------- 241 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e----------Ia---~~~~ip~-------------- 241 (660)
+.+|++++|+||||||||||++.|+|++.+..| +|.+...... ++ ..+.+++
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~ 232 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKA 232 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHH
Confidence 678999999999999999999999999988644 4555432210 00 0000110
Q ss_pred ----------------CCCCc--cccCCCCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCccHHHHHH-HH-hcCCEEE
Q 038101 242 ----------------PGIGN--ARRMQVPNSEMQHKVLIEAVENHMPQ--VIVIDEIGTKLEAMAAST-IA-QRGIQLV 299 (660)
Q Consensus 242 ----------------~~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~--VLILDEPgsgLD~~a~~~-i~-~~GvtVI 299 (660)
.++.. .+.+..|| +||+.|++++.++|+ +|++| ||+++|+..... +. ..|+++|
T Consensus 233 l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~i 308 (359)
T 2og2_A 233 VKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGL 308 (359)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEE
T ss_pred HHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEE
Confidence 01110 01223345 899999999999999 99999 999999987543 33 4699999
Q ss_pred EEEc---------ChhHHHHhcCcEEEEEcCe
Q 038101 300 ATAH---------GVTIENLIMNPSLEMLIGG 322 (660)
Q Consensus 300 ~TtH---------~~~l~~~i~dril~l~~G~ 322 (660)
++|| ..++...++.|+.++-.|.
T Consensus 309 iiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 309 ILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp EEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred EEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 9999 4566777788998888775
No 87
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.39 E-value=3.9e-13 Score=155.99 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=84.5
Q ss_pred cccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccc-cCCCC-------eEEEEcCCCccccCCCCCCCCCCccccCCCC
Q 038101 183 NLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLA-NDYKK-------RVMIVDTSSEIGGNGDIPHPGIGNARRMQVP 253 (660)
Q Consensus 183 ~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-p~~Gk-------rV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vL 253 (660)
.+++++ +. |++++|+||||||||||||.|+|+.. +..|. .++++++ + ++..++.+. -...+
T Consensus 567 ~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---i-----~~~~~~~d~-l~~g~ 636 (765)
T 1ewq_A 567 FVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---I-----YTRIGASDD-LAGGK 636 (765)
T ss_dssp CCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE---E-----EEECCC-------CC
T ss_pred eEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH---h-----hccCCHHHH-HHhcc
Confidence 566777 77 99999999999999999999999863 34442 1222221 0 111222211 12346
Q ss_pred CHHHHHHHHHHHHH--ccCCcEEEEeCC---CCCccHHHHH-H----HHhcCCEEEEEEcChhHHH
Q 038101 254 NSEMQHKVLIEAVE--NHMPQVIVIDEI---GTKLEAMAAS-T----IAQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 254 SgG~qqrv~IA~aL--~~~P~VLILDEP---gsgLD~~a~~-~----i~~~GvtVI~TtH~~~l~~ 309 (660)
|.++++++.++.++ +.+|++||+||| |+++|..+.. . +.+.|.++|++||+.++..
T Consensus 637 S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 637 STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 89999999999999 999999999999 8889987642 2 3557999999999988754
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.35 E-value=9.7e-16 Score=160.42 Aligned_cols=135 Identities=18% Similarity=0.168 Sum_probs=95.7
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC---C-C
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN---G-D 238 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~---~-~ 238 (660)
++++|+++|+ . .+|+++ |.+|++++|+||||||||||+++|+|++ .|+-++++.+...+... . .
T Consensus 103 ~~~~vs~~y~-~-----~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q~~~lf~~ti~~~n 173 (305)
T 2v9p_A 103 NYQNIELITF-I-----NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANHKSHFWLASLADTR 173 (305)
T ss_dssp HHTTCCHHHH-H-----HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGTTSGGGGGGGTTCS
T ss_pred EEEEEEEEcC-h-----hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecCccccccccHHHHh
Confidence 4567778776 2 678887 8999999999999999999999999998 46555556554432110 0 0
Q ss_pred C---CCC---------C-CCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcCh
Q 038101 239 I---PHP---------G-IGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGV 305 (660)
Q Consensus 239 i---p~~---------~-Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~ 305 (660)
+ +.. . +........||+||||| |+|++.+|+||| |++||+.....+.. .+|..
T Consensus 174 i~~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------ltH~~ 239 (305)
T 2v9p_A 174 AALVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------LHSRV 239 (305)
T ss_dssp CEEEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-------GTTTE
T ss_pred hccCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-------HhCCH
Confidence 0 000 0 11101134789999999 999999999999 99999988777743 28888
Q ss_pred hHHHHhcCcEEEEEcCeEEE
Q 038101 306 TIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 306 ~l~~~i~dril~l~~G~I~~ 325 (660)
... ..||++ ++..|++..
T Consensus 240 ~~~-~~aD~i-vl~~G~iv~ 257 (305)
T 2v9p_A 240 QTF-RFEQPC-TDESGEQPF 257 (305)
T ss_dssp EEE-ECCCCC-CCC---CCC
T ss_pred HHH-HhCCEE-EEeCCEEEE
Confidence 765 579999 998898754
No 89
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.33 E-value=3e-14 Score=149.06 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=74.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC-CeEEEEcCCCcccc---------C--CCCCCC-------------C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK-KRVMIVDTSSEIGG---------N--GDIPHP-------------G 243 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G-krV~~Vdq~~eIa~---------~--~~ip~~-------------~ 243 (660)
+.+|++++|+||||||||||+++|+|++.+..| .+|+++.+...+.. . .+.+.. +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC
Confidence 678999999999999999999999999988655 57889887643210 0 111110 0
Q ss_pred CCc-cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccH
Q 038101 244 IGN-ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEA 285 (660)
Q Consensus 244 Lg~-~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~ 285 (660)
-+. ...+..+|+||+||+.+|++++.+|+|||+|||+..+|+
T Consensus 167 ~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 167 SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 011 134567999999999999999999999999999999874
No 90
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.33 E-value=1.5e-12 Score=125.07 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=85.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC---CCCCCCCCC-----ccccCCCCCHH--HH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN---GDIPHPGIG-----NARRMQVPNSE--MQ 258 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~---~~ip~~~Lg-----~~rrl~vLSgG--~q 258 (660)
+.+|++++|+||||||||||++.|++ . .+..+.|++....+... ......++. ....+...+.+ ++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 77899999999999999999999999 2 35688888765421100 000011111 00112233333 34
Q ss_pred HHHHHHHHHccC-CcEEEEeCCCCCccHH--------HHH-------HH-HhcCCEEEEEEcChh-------------HH
Q 038101 259 HKVLIEAVENHM-PQVIVIDEIGTKLEAM--------AAS-------TI-AQRGIQLVATAHGVT-------------IE 308 (660)
Q Consensus 259 qrv~IA~aL~~~-P~VLILDEPgsgLD~~--------a~~-------~i-~~~GvtVI~TtH~~~-------------l~ 308 (660)
+++..++++..+ |++||+|||++.+|.. ... .+ .+.|++||+++|... ..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~ 172 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTL 172 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHH
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcce
Confidence 567777788775 9999999999998852 111 11 356999999999765 45
Q ss_pred HHhcCcEEEEEcC
Q 038101 309 NLIMNPSLEMLIG 321 (660)
Q Consensus 309 ~~i~dril~l~~G 321 (660)
..+||.++.+...
T Consensus 173 ~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 173 GYRCKDILRLDKL 185 (220)
T ss_dssp HHTSSEEEEEEEC
T ss_pred eecCcEEEEEEEe
Confidence 6789998887653
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.33 E-value=9.6e-13 Score=140.56 Aligned_cols=206 Identities=15% Similarity=0.180 Sum_probs=121.5
Q ss_pred ceeehhhhCCCccEEecCCCCccc-ccCcCCHHHHHHHHhhhcCCCCC------ccce--ee--c-cceeeccccCceEE
Q 038101 99 ELIEVVMDLGRKPLARFPSGDFSL-SDCQITVHHIEHATSQVGDFAVD------NRAG--IS--R-TLHRISAIRNRKGA 166 (660)
Q Consensus 99 ~l~EI~Ld~gR~~~arf~~~~~~l-~~~~vt~eDl~~~~~~lg~fs~d------~R~G--I~--r-tlhRIs~irn~~Le 166 (660)
...+|.+..+.++..+..+.-..+ ....++.+++...+..+.+..+. .+.. +. + .-.|++.+.....
T Consensus 26 ~asDIhi~~~~~v~~r~~G~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~d~~~~~~~~~r~Rv~~~~~~~g- 104 (372)
T 2ewv_A 26 GASDIHLTAGAPPAVRIDGYIKFLKDFPRLTPEDTQKLAYSVMSEKHRQKLEENGQVDFSFGVRGVGRFRANVFYQRGS- 104 (372)
T ss_dssp TCSEEEECSSSSCEEEETTEEEECTTSCCSCCSTTHHHHHTTCCSTTTTHHHHSSEEEEEEECSSSCEEEEEEECCSSS-
T ss_pred CCeEEEEEcCCeEEEEECCEEEEeccCCCCCHHHHHHHHHHHhChhhhhhhhhccceEEEEEcCCCcEEEEEEEecCCC-
Confidence 356677778888888776544444 43467777887777776443321 1111 11 1 0124443332110
Q ss_pred EEeEEEEE-Ccccc-----ccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC---
Q 038101 167 IIGLTCRV-GRAVS-----GSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN--- 236 (660)
Q Consensus 167 I~~Lt~ry-gr~v~-----G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~--- 236 (660)
..+++|. ...+. |...+|+++ +.+|++++|+|||||||||||+.|+|++.+....+|.++++..++...
T Consensus 105 -~~~viR~l~~~~~~l~~lg~~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~ 183 (372)
T 2ewv_A 105 -VAAALRSLPAEIPEFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK 183 (372)
T ss_dssp -CBEEECCBCSSCCCHHHHCCCSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS
T ss_pred -cEEEEEeCCcccCCHhHcCCCHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc
Confidence 0122322 11111 111234454 688999999999999999999999999987622367666654432100
Q ss_pred CCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHH---HHHhcCCEEEEEEcChhHHHHhcC
Q 038101 237 GDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAS---TIAQRGIQLVATAHGVTIENLIMN 313 (660)
Q Consensus 237 ~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~---~i~~~GvtVI~TtH~~~l~~~i~d 313 (660)
+.+++..++. ....+ +..|+.++.++|++|++|||+ |..... ..++.|.+|++|+|+.+ +...++
T Consensus 184 ~~v~Q~~~g~--~~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~~~g~~vi~t~H~~~-~~~~~~ 251 (372)
T 2ewv_A 184 SIVNQREVGE--DTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNT-AIDTIH 251 (372)
T ss_dssp SEEEEEEBTT--TBSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHTTTCEEEECCCCCS-HHHHHH
T ss_pred eEEEeeecCC--CHHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHHhcCCEEEEEECcch-HHHHHH
Confidence 0111111110 11223 468999999999999999999 444433 33567999999999987 556677
Q ss_pred cEEEE
Q 038101 314 PSLEM 318 (660)
Q Consensus 314 ril~l 318 (660)
+++.+
T Consensus 252 rl~~l 256 (372)
T 2ewv_A 252 RIVDI 256 (372)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76543
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.31 E-value=8.8e-13 Score=146.14 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=87.8
Q ss_pred cccccc----ccCCcEEEEEcCCCCcHHHHHHH--HHhccccCCCCeEEEEcCCC-c--c----ccCCCCCC--------
Q 038101 183 NLLQDL----VQDGASLLFIGPPGVGKTTIIRE--IARVLANDYKKRVMIVDTSS-E--I----GGNGDIPH-------- 241 (660)
Q Consensus 183 ~iL~dl----I~~Ge~ilIlGPnGsGKTTLLR~--IaglL~p~~GkrV~~Vdq~~-e--I----a~~~~ip~-------- 241 (660)
.+|+++ +.+|++++|+||||||||||++. ++|++.++.| . .+++... . + ...+.+++
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~-i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l 103 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-G-VFVTFEETPQDIIKNARSFGWDLAKLVDEGKL 103 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-E-EEEESSSCHHHHHHHHGGGTCCHHHHHHTTSE
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-E-EEEEEeCCHHHHHHHHHHcCCChHHhhccCcE
Confidence 677776 67999999999999999999999 7899987654 3 3443221 0 0 00111110
Q ss_pred --CCCCc-cccCCCC---CHHHHHHHHHHHHH-ccCCcEEEEeCCCC-----CccHHHHHHH-------HhcCCEEEEEE
Q 038101 242 --PGIGN-ARRMQVP---NSEMQHKVLIEAVE-NHMPQVIVIDEIGT-----KLEAMAASTI-------AQRGIQLVATA 302 (660)
Q Consensus 242 --~~Lg~-~rrl~vL---SgG~qqrv~IA~aL-~~~P~VLILDEPgs-----gLD~~a~~~i-------~~~GvtVI~Tt 302 (660)
..... .+....+ .-+. ....+...+ ..+|++|+||||++ ++|+..+..+ ++.|+|||+++
T Consensus 104 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~it 182 (525)
T 1tf7_A 104 FILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTT 182 (525)
T ss_dssp EEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 00000 0011112 2222 233344444 37999999999987 4588776654 46799999999
Q ss_pred cChhH---------HHHhcCcEEEEEc
Q 038101 303 HGVTI---------ENLIMNPSLEMLI 320 (660)
Q Consensus 303 H~~~l---------~~~i~dril~l~~ 320 (660)
|+.+. +..+||+++.+..
T Consensus 183 H~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 183 ERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp ECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred cCCCCccccccccceeeeeeEEEEEEE
Confidence 99987 4667999999988
No 93
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.30 E-value=3.2e-13 Score=138.35 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=72.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCCCccccC-CCCCCCCCCc-----------
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYK---------------KRVMIVDTSSEIGGN-GDIPHPGIGN----------- 246 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------krV~~Vdq~~eIa~~-~~ip~~~Lg~----------- 246 (660)
+++|+||||||||||+++|+|++.++.| +.++++.+...+... ......+++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 5799999999999999999999987644 345666554322100 0000001110
Q ss_pred ---------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH---HhcCCEEEEEEcChhH
Q 038101 247 ---------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI---AQRGIQLVATAHGVTI 307 (660)
Q Consensus 247 ---------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i---~~~GvtVI~TtH~~~l 307 (660)
......+|+||+||+.+|+|++. ++++|||+.+||+.....+ .+. ++||++.|-.+.
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGG
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEecccc
Confidence 01235699999999999998765 9999999999998875554 444 889988886653
No 94
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.28 E-value=1.7e-12 Score=151.29 Aligned_cols=136 Identities=17% Similarity=0.146 Sum_probs=80.4
Q ss_pred cccccc-c-cCCcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCC-ccccCC-CCCCCCCCc--cccCCCCCH
Q 038101 183 NLLQDL-V-QDGASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSS-EIGGNG-DIPHPGIGN--ARRMQVPNS 255 (660)
Q Consensus 183 ~iL~dl-I-~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~~-eIa~~~-~ip~~~Lg~--~rrl~vLSg 255 (660)
.++.++ + .+|++++|+||||||||||||.|+|+.... .|. +++... .++... .++..+... ......++.
T Consensus 596 ~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~ 672 (800)
T 1wb9_A 596 FIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS---YVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMV 672 (800)
T ss_dssp CCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---CBSSSEEEECCCCEEEEEEC-----------CHH
T ss_pred eeeecccccCCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc---ccchhcccceeHHHHHhhCCHHHHHHhhhhhhhH
Confidence 355565 4 468999999999999999999999975321 221 122110 111000 011111111 012234566
Q ss_pred HHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHH--------HHh-cCCEEEEEEcChhHHHHhcCcEEEEEcCeE
Q 038101 256 EMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAAST--------IAQ-RGIQLVATAHGVTIENLIMNPSLEMLIGGV 323 (660)
Q Consensus 256 G~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~--------i~~-~GvtVI~TtH~~~l~~~i~dril~l~~G~I 323 (660)
+|++ +..+...+++|++||+||||+|+|+..... +.+ .|.++|++||+.++.. +|++...+.++.+
T Consensus 673 e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 673 EMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL 747 (800)
T ss_dssp HHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred HHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence 6654 444455689999999999987777643222 245 5999999999998764 6776544445544
No 95
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.26 E-value=1.1e-13 Score=146.79 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=102.6
Q ss_pred eEEEEeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC-ccc----c-
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS-EIG----G- 235 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~-eIa----~- 235 (660)
.+++.++++.|+.. ..+|+++ |.+|+.++|+|||||||||||++|+|++.++.| .+.++.++. ++. .
T Consensus 45 ~i~~~~l~~~~~tg----~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g-~i~~~G~~~~ev~~~i~~~ 119 (347)
T 2obl_A 45 PLLRQVIDQPFILG----VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII-VLALIGERGREVNEFLALL 119 (347)
T ss_dssp STTCCCCCSEECCS----CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHTTS
T ss_pred CeeecccceecCCC----CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE-EEEEecccHHHHHHHHHhh
Confidence 45678889999732 2678777 899999999999999999999999999988754 344444331 110 0
Q ss_pred -------------CCCCCCC----------CCCcc------------ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 236 -------------NGDIPHP----------GIGNA------------RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 236 -------------~~~ip~~----------~Lg~~------------rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
..+.+.. .+... ..+..+|+|| |++++| +++|++ +
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t 189 (347)
T 2obl_A 120 PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------R 189 (347)
T ss_dssp CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------B
T ss_pred hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------c
Confidence 0000000 00000 1234468888 889888 578877 8
Q ss_pred CCccHHHHHHHH---------hcCC-----EEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 281 TKLEAMAASTIA---------QRGI-----QLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 281 sgLD~~a~~~i~---------~~Gv-----tVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
.|+|+.....+. +.|. ||++++|+++ +.+||+++.+.+|+|..
T Consensus 190 ~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 190 GGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp TTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 999999987761 2476 8999999998 57899999999999753
No 96
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.26 E-value=1.3e-11 Score=116.33 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=61.7
Q ss_pred ccCCCCCHHHHHHHHHH------HHHccCCcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCc
Q 038101 248 RRMQVPNSEMQHKVLIE------AVENHMPQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNP 314 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA------~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dr 314 (660)
+.+..||+|||||++|| ++++++|++||+||||++||+..+..+ .+.|.+||++||+.. ...+||+
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCE
Confidence 46788999999999886 789999999999999999999987765 245899999999995 4578999
Q ss_pred EEEEE
Q 038101 315 SLEML 319 (660)
Q Consensus 315 il~l~ 319 (660)
++.+.
T Consensus 132 ii~l~ 136 (148)
T 1f2t_B 132 VIRIS 136 (148)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99884
No 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.24 E-value=1e-12 Score=128.07 Aligned_cols=129 Identities=23% Similarity=0.254 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCC---------------CeEEEEcCCCc-----cccCCCCCC-----CCCCc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYK---------------KRVMIVDTSSE-----IGGNGDIPH-----PGIGN 246 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G---------------krV~~Vdq~~e-----Ia~~~~ip~-----~~Lg~ 246 (660)
|++++|+||||||||||++.|+|++. +.| ++++++.+... ++.....+. ..++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~- 78 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVG- 78 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESS-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccc-
Confidence 68899999999999999999999986 433 33444433210 000000000 0011
Q ss_pred cccCCCCCHHHHHHH-HHHH---HHccCCcEEEEeC--CCCCccHHHHHHH---HhcCCEEEE----EEcCh--hHHHHh
Q 038101 247 ARRMQVPNSEMQHKV-LIEA---VENHMPQVIVIDE--IGTKLEAMAASTI---AQRGIQLVA----TAHGV--TIENLI 311 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv-~IA~---aL~~~P~VLILDE--PgsgLD~~a~~~i---~~~GvtVI~----TtH~~--~l~~~i 311 (660)
+....+|+++++++ ++++ |+.++|+|||+|| |+..+|......+ .+...++|+ ++|+. .+++.+
T Consensus 79 -~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i 157 (189)
T 2i3b_A 79 -QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI 157 (189)
T ss_dssp -SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHH
T ss_pred -eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHH
Confidence 11224677777665 3333 4689999999999 5666787765554 344545553 23876 555665
Q ss_pred cCcEEEEEcCeEEEEe
Q 038101 312 MNPSLEMLIGGVQNVT 327 (660)
Q Consensus 312 ~dril~l~~G~I~~V~ 327 (660)
++. .+|++..++
T Consensus 158 ~~~----~~~~i~~~~ 169 (189)
T 2i3b_A 158 RNR----KDVKVFNVT 169 (189)
T ss_dssp HTT----CCSEEEECC
T ss_pred eec----CCcEEEEeC
Confidence 554 467776654
No 98
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.23 E-value=1.5e-11 Score=119.86 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=68.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHh--ccccC---CCCeEEEEcCCCccc---------cCCCCCCCCCCccccCCCC
Q 038101 188 LVQDGASLLFIGPPGVGKTTIIREIAR--VLAND---YKKRVMIVDTSSEIG---------GNGDIPHPGIGNARRMQVP 253 (660)
Q Consensus 188 lI~~Ge~ilIlGPnGsGKTTLLR~Iag--lL~p~---~GkrV~~Vdq~~eIa---------~~~~ip~~~Lg~~rrl~vL 253 (660)
-+.+|++++|+||||||||||++.|++ ++.+. .+..+.|++....+. ..+..++.-+.........
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 378899999999999999999999999 44431 145678887654211 0010000000000011234
Q ss_pred CHHHHHHH---HHHHHHccCCcEEEEeCCCCCccHH-------H-----HHHH--------HhcCCEEEEEEcChhHHH
Q 038101 254 NSEMQHKV---LIEAVENHMPQVIVIDEIGTKLEAM-------A-----ASTI--------AQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 254 SgG~qqrv---~IA~aL~~~P~VLILDEPgsgLD~~-------a-----~~~i--------~~~GvtVI~TtH~~~l~~ 309 (660)
+..+.... ..+.+..++|++||+|||++.+|.. . ...+ .+.|++||+++|......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 44443322 2233334789999999999998874 2 1111 346999999999765443
No 99
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.23 E-value=8.3e-12 Score=126.55 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=77.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC---------CCCeEEEEcCCCccc-------cCC-CCC---------CC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND---------YKKRVMIVDTSSEIG-------GNG-DIP---------HP 242 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~---------~GkrV~~Vdq~~eIa-------~~~-~ip---------~~ 242 (660)
+.+|++++|+||||||||||++.|++.+... .+..+.|++...... ..+ .+. ..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~l 106 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGL 106 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHHE
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCce
Confidence 6789999999999999999999999877542 134677776543211 000 110 00
Q ss_pred CCCc--cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC--CccHHHH---HHH--------HhcCCEEEEEEcChhH
Q 038101 243 GIGN--ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT--KLEAMAA---STI--------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 243 ~Lg~--~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs--gLD~~a~---~~i--------~~~GvtVI~TtH~~~l 307 (660)
.+.. .+.+..+|+|+.+++ ++++.+|++||+|||++ ++|.... ..+ .+.|++||+++|....
T Consensus 107 ~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 107 LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 1111 135677899987654 46677999999999999 8886321 221 3679999999999875
Q ss_pred HH
Q 038101 308 EN 309 (660)
Q Consensus 308 ~~ 309 (660)
..
T Consensus 184 ~~ 185 (279)
T 1nlf_A 184 AA 185 (279)
T ss_dssp --
T ss_pred cc
Confidence 43
No 100
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.23 E-value=1e-12 Score=124.10 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=68.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..|++++|+||||+|||||+++|++.+.+..|..+.+++....+... . ..++.+..+ . .....
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~-----------~--~~~~~~~~~-~--~~~~~ 98 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL-----------K--HLMDEGKDT-K--FLKTV 98 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH-----------H--HHHHHTCCS-H--HHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-----------H--HHhcCchHH-H--HHHHh
Confidence 677999999999999999999999999976667666665432211000 0 000000000 1 11223
Q ss_pred cCCcEEEEeCCCC-CccHHHHHHH-------HhcCCEEEEEEcChh
Q 038101 269 HMPQVIVIDEIGT-KLEAMAASTI-------AQRGIQLVATAHGVT 306 (660)
Q Consensus 269 ~~P~VLILDEPgs-gLD~~a~~~i-------~~~GvtVI~TtH~~~ 306 (660)
.+|++||||||++ ++|+.....+ .+.|.++|+|||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 4899999999995 8998876654 347899999998764
No 101
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.18 E-value=1.9e-11 Score=129.42 Aligned_cols=120 Identities=13% Similarity=0.153 Sum_probs=79.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccCC---CCeEEEEcCCCcccc--CCCC-CCCCCCc-----cc-cCCC-C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL--ANDY---KKRVMIVDTSSEIGG--NGDI-PHPGIGN-----AR-RMQV-P 253 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~~---GkrV~~Vdq~~eIa~--~~~i-p~~~Lg~-----~r-rl~v-L 253 (660)
+..|++++|+||||||||||++.|++.. .++. +.++.|++....+.. ...+ ...++.. +- .... .
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 8899999999999999999999999987 4444 247778876543200 0000 0011110 00 0111 2
Q ss_pred CHHHHHHHHHHHHHc-------cCCcEEEEeCCCCCccHHH------------HHHH--------HhcCCEEEEEEcChh
Q 038101 254 NSEMQHKVLIEAVEN-------HMPQVIVIDEIGTKLEAMA------------ASTI--------AQRGIQLVATAHGVT 306 (660)
Q Consensus 254 SgG~qqrv~IA~aL~-------~~P~VLILDEPgsgLD~~a------------~~~i--------~~~GvtVI~TtH~~~ 306 (660)
+.++++++.++..++ .+|++||+|||++.+|+.. ...+ .+.|++||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 466788888888887 6899999999999998851 1121 346999999999876
Q ss_pred HH
Q 038101 307 IE 308 (660)
Q Consensus 307 l~ 308 (660)
..
T Consensus 288 ~~ 289 (349)
T 1pzn_A 288 RP 289 (349)
T ss_dssp --
T ss_pred cc
Confidence 43
No 102
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.17 E-value=3.2e-12 Score=127.41 Aligned_cols=129 Identities=14% Similarity=0.185 Sum_probs=81.9
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccC----CCCeEEEEcCCCcccc----------CC--CCCCCC
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLAND----YKKRVMIVDTSSEIGG----------NG--DIPHPG 243 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~----~GkrV~~Vdq~~eIa~----------~~--~ip~~~ 243 (660)
.+|+++ +.+|++++|+||||||||||+++|++++... .++.++++++...... .+ .+....
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPD 92 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcc
Confidence 566666 7889999999999999999999999976321 1346788877632110 00 111000
Q ss_pred -------------C--CccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcC-hhH
Q 038101 244 -------------I--GNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHG-VTI 307 (660)
Q Consensus 244 -------------L--g~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~-~~l 307 (660)
+ ....++..+|+|++||+.+ ++++.+|+++|+|||....+..... ..+.+|++++|+ ...
T Consensus 93 ~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~---~~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 93 AFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRD---MFHLRLFVDTDSDVRL 168 (245)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHT---TCSEEEEEECCHHHHH
T ss_pred cccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHH---hcCeEEEEECCHHHHH
Confidence 0 0013446689999999877 5777899999999998776654221 248999999997 444
Q ss_pred HHHhcCcE
Q 038101 308 ENLIMNPS 315 (660)
Q Consensus 308 ~~~i~dri 315 (660)
...+++.+
T Consensus 169 ~r~~~r~~ 176 (245)
T 2jeo_A 169 SRRVLRDV 176 (245)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 45555443
No 103
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.17 E-value=5.3e-13 Score=145.82 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=100.9
Q ss_pred eEEEEeEEEEECccccccccccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC-------------------
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------- 222 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------- 222 (660)
.++++++++.|+.. ..+|+++ +.+|+.++|+|||||||||||++|+|+..++.|.
T Consensus 131 ~l~~~~v~~~~~tg----~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 131 PLQRTPIEHVLDTG----VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp TTTSCCCCSBCCCS----CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred ceEEeccceecCCC----ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45678888888632 2678877 8999999999999999999999999999887441
Q ss_pred -------eEEEEcCCCcccc------------CCCCCCCC--CCc-cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCC
Q 038101 223 -------RVMIVDTSSEIGG------------NGDIPHPG--IGN-ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIG 280 (660)
Q Consensus 223 -------rV~~Vdq~~eIa~------------~~~ip~~~--Lg~-~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPg 280 (660)
.|+++.+.+.-.. ...+...+ +.. ...+..+|+|+ ||++|| +.+|++ +
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~~------t 276 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPPA------T 276 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCCC------S
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCcc------c
Confidence 2333333211000 00000000 000 01233468888 999998 788887 9
Q ss_pred CCccHHHHHHH-------Hh----cCC-----EEEEEEcChhHHHHhcCcEEEEEcCeEEE
Q 038101 281 TKLEAMAASTI-------AQ----RGI-----QLVATAHGVTIENLIMNPSLEMLIGGVQN 325 (660)
Q Consensus 281 sgLD~~a~~~i-------~~----~Gv-----tVI~TtH~~~l~~~i~dril~l~~G~I~~ 325 (660)
+++|+.....+ .+ .|. ||++++|+++ ..+||.++.+.+|++..
T Consensus 277 ~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 277 KGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp SSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 99999987776 12 263 8999999998 56899999999998754
No 104
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.13 E-value=5.6e-11 Score=111.15 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+|+.++|+||||+|||||+++|++.+.+ .|.++.+++...... . ++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------~----------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------T----------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------C----------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------H----------------HHHhC
Confidence 7999999999999999999999999876 466677776543210 0 23468
Q ss_pred CcEEEEeCCCCCccHHHHHHH-------HhcCCE-EEEEEcC
Q 038101 271 PQVIVIDEIGTKLEAMAASTI-------AQRGIQ-LVATAHG 304 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i-------~~~Gvt-VI~TtH~ 304 (660)
|++|++|||+...+.. ...+ .+.|.+ +|+++|.
T Consensus 84 ~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 9999999999844433 3332 466787 8888884
No 105
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.13 E-value=4.6e-13 Score=131.99 Aligned_cols=124 Identities=17% Similarity=0.096 Sum_probs=76.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC------------------eEEEEcCCCccc-c---CC-C-----CC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK------------------RVMIVDTSSEIG-G---NG-D-----IP 240 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk------------------rV~~Vdq~~eIa-~---~~-~-----ip 240 (660)
+.+|++++|+||||||||||+++|+|++ + |. .++|+++..... . .+ . +.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYA 96 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcc
Confidence 7789999999999999999999999998 4 32 111222211000 0 00 0 00
Q ss_pred CC--CCCcc--------cc----CCCCCHHHHHHHHH-----HHHHccCCcEEEEeCCCCCccHHHHHHH----H----h
Q 038101 241 HP--GIGNA--------RR----MQVPNSEMQHKVLI-----EAVENHMPQVIVIDEIGTKLEAMAASTI----A----Q 293 (660)
Q Consensus 241 ~~--~Lg~~--------rr----l~vLSgG~qqrv~I-----A~aL~~~P~VLILDEPgsgLD~~a~~~i----~----~ 293 (660)
.. +.... .. -..+|+||+||+++ +++++..|+++++|||++++|......+ . +
T Consensus 97 ~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 97 NNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 00 00000 00 02359999999999 7888899999999999999886533222 1 1
Q ss_pred ------cCCEEEEEEcChhHHHHhcCcE
Q 038101 294 ------RGIQLVATAHGVTIENLIMNPS 315 (660)
Q Consensus 294 ------~GvtVI~TtH~~~l~~~i~dri 315 (660)
.+...|+++|+.+.+....+.+
T Consensus 177 ~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 177 LHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 4567777888777665554444
No 106
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=8.4e-11 Score=103.67 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=63.4
Q ss_pred cCchHHHHHHH-HHHHHHHHHhcCCCce-eecCCCChhHHHHHHHHHHHcCcceeeccCCCC-ceEEEcCCC
Q 038101 547 INLSEKIDALE-EARVAIEQVVIPKGES-VELLPRPSYILSIQIDLIRKYQLHYQRVGKEPD-ARLRILPFQ 615 (660)
Q Consensus 547 ~~~~~~~~al~-e~~~ai~~~v~~~~~~-vel~pr~~~i~~~q~~l~~~y~l~~~~~g~~~~-~r~~i~p~~ 615 (660)
+++++++++.. +.+.++++++...|++ |+|.|.+++.|+++|++++.|+|.|+|+|+||+ |||+|+|..
T Consensus 3 ~~~~~e~~~yR~~re~~L~~la~~~g~~~v~L~PM~~~eRriIH~~l~~~gl~S~S~Geep~~R~VvI~~~~ 74 (94)
T 2cpm_A 3 SGSSGQKVEFRKRMEKEVSDFIQDSGQIKKKFQPMNKIERSILHDVVEVAGLTSFSFGEDDDCRYVMIFKKE 74 (94)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHHHCSSCCEEECCCCCSSHHHHHHHHHHHHTCEEEEECSSSSCCEEEEECST
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCceEeCCCCHHHHHHHHHHHHHCCCEEEEecCCCCceEEEEEeCC
Confidence 34566777777 8999999999999997 999999999999999999999999999999998 999999973
No 107
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.11 E-value=2.4e-10 Score=127.11 Aligned_cols=205 Identities=17% Similarity=0.175 Sum_probs=119.6
Q ss_pred cceeehhhhCCC-ccEEecCCCCcccccCcCCHHHHHHHHhhhcCCCC----Cccceeecc---ceeeccccCceEE--E
Q 038101 98 YELIEVVMDLGR-KPLARFPSGDFSLSDCQITVHHIEHATSQVGDFAV----DNRAGISRT---LHRISAIRNRKGA--I 167 (660)
Q Consensus 98 ~~l~EI~Ld~gR-~~~arf~~~~~~l~~~~vt~eDl~~~~~~lg~fs~----d~R~GI~rt---lhRIs~irn~~Le--I 167 (660)
..+.||.++-.. ++.+.+...........++.+++...++++...++ ..++-++.+ .+|+...-.+.+. =
T Consensus 142 ~~v~dI~in~~~~~v~v~~~~~g~~~~~~~~~~~~l~~li~~i~~~~g~~i~~~~P~~~~~lp~g~Rv~~~~~~~~~~~G 221 (511)
T 2oap_1 142 TNVEDISCDGYNIPIFIYHQKYGNVETNIVLDQEKLDRMVLRLTQRSGKHISIANPIVDATLPDGSRLQATFGTEVTPRG 221 (511)
T ss_dssp TTEEEEEECSTTCCCEEEETTTEEEEESCCCCHHHHHHHHHHHHHHTTCCCBTTBCEEEEEETTTEEEEEECSSSSCTTC
T ss_pred CCceEEEEECCCCEEEEEEccCcEEecCccCCHHHHHHHHHHHHHHcCCCccccCcceeeecCCCeEEEEEECCCccCCC
Confidence 457778777644 66666544333333335688999988888765443 122233333 3677654211100 0
Q ss_pred EeEEEEECcccc---------c--cccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc
Q 038101 168 IGLTCRVGRAVS---------G--SANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI 233 (660)
Q Consensus 168 ~~Lt~rygr~v~---------G--~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eI 233 (660)
..+++|.-+... | ...++.++ ++.|++++|+|||||||||||++|+|++.++. ++..+....++
T Consensus 222 ~~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~--giitied~~E~ 299 (511)
T 2oap_1 222 SSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA--KVVSIEDTREI 299 (511)
T ss_dssp SEEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC--CEEEEESSCCC
T ss_pred CEEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC--CEEEEcCcccc
Confidence 245555422211 1 12234444 78999999999999999999999999998764 45566655554
Q ss_pred ccCCCCCCCC-CCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChhHHH
Q 038101 234 GGNGDIPHPG-IGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVTIEN 309 (660)
Q Consensus 234 a~~~~ip~~~-Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~l~~ 309 (660)
... +.. +....+.....++.-..-.+..++.++|++++++|.... +....-.....|..++.|.|..+..+
T Consensus 300 ~~~----~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~-E~~~~l~a~~tGh~~~sT~Ha~~~~~ 371 (511)
T 2oap_1 300 KLY----HENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGR-EAQTLFQAMSTGHASYSTLHAGDINQ 371 (511)
T ss_dssp CCC----CSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCST-HHHHHHHHHHTTCEEEEEEECSSHHH
T ss_pred cCC----CCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHH-HHHHHHHhhcCCCCcccccccCCHHH
Confidence 221 110 000001011111111223455677899999999999865 34444445677999988999876544
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.05 E-value=2.6e-10 Score=134.67 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=69.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHMPQ--VIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~P~--VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+.+..||+|||||+.||++++.+|+ +|||||||++||+.....+ ++.|.|||+++|+++++.. ||+++.+
T Consensus 460 r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~l 538 (916)
T 3pih_A 460 RSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDI 538 (916)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 5678899999999999999999887 9999999999999887665 3569999999999998865 9999999
Q ss_pred ------EcCeEEEEe
Q 038101 319 ------LIGGVQNVT 327 (660)
Q Consensus 319 ------~~G~I~~V~ 327 (660)
..|++.+.+
T Consensus 539 gpgag~~~G~iv~~G 553 (916)
T 3pih_A 539 GPGGGTNGGRVVFQG 553 (916)
T ss_dssp ESSSGGGCSEEEEEE
T ss_pred cCCcccCCCEEEEee
Confidence 778887654
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.02 E-value=8.7e-12 Score=129.27 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=62.0
Q ss_pred EeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhc-cccCCC--------------CeEEEEcCCC
Q 038101 168 IGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARV-LANDYK--------------KRVMIVDTSS 231 (660)
Q Consensus 168 ~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~Iagl-L~p~~G--------------krV~~Vdq~~ 231 (660)
.||++.|++. .+++++ + .++|+||||||||||++.|+|. +.++.| ..++++.+..
T Consensus 2 ~~l~~~~~~~-----~~l~~~~~----~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHRK-----SVKKGFEF----TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ---------------------CE----EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceECCE-----EEEcCCCE----EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 4688888876 667766 3 3499999999999999999987 655433 1122222221
Q ss_pred cc---------ccCCCCCC--CCCCcc---------ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC-CccHHHHHH
Q 038101 232 EI---------GGNGDIPH--PGIGNA---------RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT-KLEAMAAST 290 (660)
Q Consensus 232 eI---------a~~~~ip~--~~Lg~~---------rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs-gLD~~a~~~ 290 (660)
.. .+.+.... ...... +.+..+|+|+||++.++++++ +|++|||++ +||+.....
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~ 148 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAF 148 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHH
Confidence 10 00000000 000000 233456888888877766653 999999987 599987644
Q ss_pred HH----hcCCEEEEEEcChh
Q 038101 291 IA----QRGIQLVATAHGVT 306 (660)
Q Consensus 291 i~----~~GvtVI~TtH~~~ 306 (660)
+. +.++++|++.||+.
T Consensus 149 l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 149 MKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHhcCCEEEEEEeCCCC
Confidence 42 24788999999974
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.02 E-value=5.3e-11 Score=113.44 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=75.5
Q ss_pred eEEEEeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhcc-----ccCCCC-----------eEEE
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVL-----ANDYKK-----------RVMI 226 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL-----~p~~Gk-----------rV~~ 226 (660)
.++++||+++|+. .++.++ +.+|..++|+|+||||||||++.|+|.. .++.|. .+.+
T Consensus 3 ~l~~~~~~~~~~~------~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMSA------PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEEE------SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheeec------CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 3678999999973 466667 8899999999999999999999999987 554332 1233
Q ss_pred EcCCCc----------------cc-------cC------CCCCC---------------CCCCc---cccCCCCCHHHHH
Q 038101 227 VDTSSE----------------IG-------GN------GDIPH---------------PGIGN---ARRMQVPNSEMQH 259 (660)
Q Consensus 227 Vdq~~e----------------Ia-------~~------~~ip~---------------~~Lg~---~rrl~vLSgG~qq 259 (660)
+|+... +. .. .++.. .++.. ..+++.+|+|++|
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~ 156 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK 156 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence 343211 00 00 00000 01110 1345678999999
Q ss_pred H-HHHHHHHccCCcEEEEeCCCCCccHHHHHHH
Q 038101 260 K-VLIEAVENHMPQVIVIDEIGTKLEAMAASTI 291 (660)
Q Consensus 260 r-v~IA~aL~~~P~VLILDEPgsgLD~~a~~~i 291 (660)
+ +..+++++.+|.+++.|||++++|.....++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 157 AQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp HHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHH
T ss_pred HHHHHHHHHHHhcCCCCceEEEeecCCCCHHHH
Confidence 8 7888888899998999999999999877765
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.01 E-value=8.1e-10 Score=115.21 Aligned_cols=114 Identities=25% Similarity=0.296 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc-cc------------cCCCCCCC-CC------------
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE-IG------------GNGDIPHP-GI------------ 244 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e-Ia------------~~~~ip~~-~L------------ 244 (660)
+|++++|+||||||||||++.|+|++.++.| +|.+...... .+ ..+.+++. +.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999998755 5666543310 00 01111110 00
Q ss_pred -----------CccccC----CCCCHHHHHHHHHHHHHccCCc--EEEEeCCCCCccHHH-HHHHH-hcCCEEEEEEcCh
Q 038101 245 -----------GNARRM----QVPNSEMQHKVLIEAVENHMPQ--VIVIDEIGTKLEAMA-ASTIA-QRGIQLVATAHGV 305 (660)
Q Consensus 245 -----------g~~rrl----~vLSgG~qqrv~IA~aL~~~P~--VLILDEPgsgLD~~a-~~~i~-~~GvtVI~TtH~~ 305 (660)
+..-+. ..++...+|++.||+++...|+ ++++| ++++.+... ...+. ..|.++|++||+.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 000011 1123445899999999999999 77888 555555443 33344 4599999999974
Q ss_pred h
Q 038101 306 T 306 (660)
Q Consensus 306 ~ 306 (660)
.
T Consensus 259 ~ 259 (304)
T 1rj9_A 259 G 259 (304)
T ss_dssp S
T ss_pred c
Confidence 3
No 112
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.96 E-value=1.7e-10 Score=122.65 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=80.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccc--cC-CCCCHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNAR--RM-QVPNSEMQHKVLIEA 265 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~r--rl-~vLSgG~qqrv~IA~ 265 (660)
+++|++++|+||||||||||+++|+|++.++.| . ..++...++... ... ..++-.- .. ...+.+...+..|+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~-I~ie~~~e~~~~-~~~-~~v~~v~~q~~~~~~~~~~t~~~~i~~ 247 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQR-L-ITIEDVPELFLP-DHP-NHVHLFYPSEAKEEENAPVTAATLLRS 247 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC-E-EEEESSSCCCCT-TCS-SEEEEECC----------CCHHHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce-E-EEECCccccCcc-ccC-CEEEEeecCccccccccccCHHHHHHH
Confidence 889999999999999999999999999988654 3 344433333110 000 0000000 00 001244557788999
Q ss_pred HHccCCcEEEEeCCCCCccHHHHHHHHhcCC-EEEEEEcChhHHHHhcCcEEEEEcC
Q 038101 266 VENHMPQVIVIDEIGTKLEAMAASTIAQRGI-QLVATAHGVTIENLIMNPSLEMLIG 321 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~a~~~i~~~Gv-tVI~TtH~~~l~~~i~dril~l~~G 321 (660)
++.+.|+.+++||+... .....-.....|. +++.++|..+ +...++++..+..+
T Consensus 248 ~l~~~pd~~l~~e~r~~-~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 248 CLRMKPTRILLAELRGG-EAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQ 302 (361)
T ss_dssp HTTSCCSEEEESCCCST-HHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred HHhcCCCEEEEcCchHH-HHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence 99999999999999853 2222222234554 6799999987 56678887666544
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.95 E-value=1.2e-09 Score=129.42 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=69.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHccC--CcEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENHM--PQVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~~--P~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+.+..||+||+||+.||+++.++ |++|||||||++||+.....+ ++.|.|||+++|+.+++. .||+++.|
T Consensus 517 r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~L 595 (993)
T 2ygr_A 517 RAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HADWIVDI 595 (993)
T ss_dssp CBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TCSEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hCCEEEEe
Confidence 56789999999999999999998 599999999999999987665 568999999999999876 69999999
Q ss_pred ------EcCeEEEEe
Q 038101 319 ------LIGGVQNVT 327 (660)
Q Consensus 319 ------~~G~I~~V~ 327 (660)
..|++.+.+
T Consensus 596 gp~aG~~gG~iv~~G 610 (993)
T 2ygr_A 596 GPGAGEHGGRIVHSG 610 (993)
T ss_dssp CSSSGGGCCSCCEEE
T ss_pred cCccccCCCEEEEee
Confidence 567776544
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.95 E-value=1.1e-09 Score=129.47 Aligned_cols=82 Identities=12% Similarity=0.098 Sum_probs=70.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
.+.+..||+||+||+.||+++.++| ++|||||||++||+.....+ ++.|.|||+++|+.+++. .||+++.
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~ 577 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLID 577 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence 3567899999999999999999984 99999999999999886664 467999999999999875 6999999
Q ss_pred E------EcCeEEEEecC
Q 038101 318 M------LIGGVQNVTLG 329 (660)
Q Consensus 318 l------~~G~I~~V~lg 329 (660)
| ..|++.+.+..
T Consensus 578 LgpgaG~~gG~iv~~G~~ 595 (972)
T 2r6f_A 578 IGPGAGIHGGEVVAAGTP 595 (972)
T ss_dssp ECSSSGGGCCSEEEEECT
T ss_pred eCCCccCCCCEEEEecCH
Confidence 9 67888765533
No 115
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.93 E-value=9.5e-10 Score=121.65 Aligned_cols=73 Identities=12% Similarity=0.108 Sum_probs=63.9
Q ss_pred ccCCCC-CHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 248 RRMQVP-NSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 248 rrl~vL-SgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
+.+..+ |+||+||++||++++++| ++||+|||+++||+.++..+ ...|.+||++||+..++. .||+++++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 466777 999999999999999999 99999999999999987765 123899999999999876 59999999
Q ss_pred EcC
Q 038101 319 LIG 321 (660)
Q Consensus 319 ~~G 321 (660)
..+
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
No 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.92 E-value=1.1e-10 Score=127.09 Aligned_cols=134 Identities=11% Similarity=0.169 Sum_probs=74.6
Q ss_pred eEEEEeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC--------------CeEEEEc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYK--------------KRVMIVD 228 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G--------------krV~~Vd 228 (660)
.+.+.||+++|++. .+++++ + .++|+|+||||||||++.|+|...+..+ ..++++.
T Consensus 11 ~l~~~~l~~~y~~~-----~vl~~vsf----~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVYRK-----SVKRGFEF----TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTTTT-----TCC-CCCE----EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeECCE-----EEecCCCE----EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 46788999999875 667766 3 2499999999999999999998763221 0122222
Q ss_pred CCCccc-cCCCCCCCCCCcc-------ccC-----CCCCHHHHHHHHHHHHHccCCc---EEEEeCCC-CCccHHHHHHH
Q 038101 229 TSSEIG-GNGDIPHPGIGNA-------RRM-----QVPNSEMQHKVLIEAVENHMPQ---VIVIDEIG-TKLEAMAASTI 291 (660)
Q Consensus 229 q~~eIa-~~~~ip~~~Lg~~-------rrl-----~vLSgG~qqrv~IA~aL~~~P~---VLILDEPg-sgLD~~a~~~i 291 (660)
+...+. ....+...+++.. +.+ ..++.++++++.|+++++.+|+ +|++|||+ .++|+.....+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l 161 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM 161 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH
Confidence 211110 0000001111110 000 0123445566778899999999 99999998 69998765443
Q ss_pred --HhcCCEEEEEEcChh
Q 038101 292 --AQRGIQLVATAHGVT 306 (660)
Q Consensus 292 --~~~GvtVI~TtH~~~ 306 (660)
...++.+|++.|-.+
T Consensus 162 k~L~~~v~iIlVinK~D 178 (418)
T 2qag_C 162 KRLHEKVNIIPLIAKAD 178 (418)
T ss_dssp HHHTTTSEEEEEEESTT
T ss_pred HHHhccCcEEEEEEccc
Confidence 234788888887554
No 117
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.88 E-value=1.9e-09 Score=126.42 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=70.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHccCC--cEEEEeCCCCCccHHHHHHH-------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 247 ARRMQVPNSEMQHKVLIEAVENHMP--QVIVIDEIGTKLEAMAASTI-------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 247 ~rrl~vLSgG~qqrv~IA~aL~~~P--~VLILDEPgsgLD~~a~~~i-------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
.+.+..||+||+||+.||+++.++| .+|||||||++||+..+..+ ++.|.|||+++|+++++. .||+++.
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~ 452 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVD 452 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEE
Confidence 3567899999999999999999999 49999999999999886664 567999999999999765 6999999
Q ss_pred E------EcCeEEEEec
Q 038101 318 M------LIGGVQNVTL 328 (660)
Q Consensus 318 l------~~G~I~~V~l 328 (660)
+ ..|++.+.+.
T Consensus 453 lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGP 469 (842)
T ss_dssp ECSSSGGGCCSEEEEEC
T ss_pred eCCCcccCCCEEEEecC
Confidence 9 6777776543
No 118
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.85 E-value=3.6e-12 Score=122.84 Aligned_cols=112 Identities=19% Similarity=0.126 Sum_probs=73.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCC------------CCCC-C------------CC
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNG------------DIPH-P------------GI 244 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~------------~ip~-~------------~L 244 (660)
.+|++++|+||||||||||++.|+|++.+ .++++++...+.... +.+. . ++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 56899999999999999999999999864 578887754332100 0000 0 00
Q ss_pred Cc--cccCCCCCHHH----HHHHHHHHHHccCCcEEEEeCCCCC-------ccHHHHHHH--------HhcCCEEEEEEc
Q 038101 245 GN--ARRMQVPNSEM----QHKVLIEAVENHMPQVIVIDEIGTK-------LEAMAASTI--------AQRGIQLVATAH 303 (660)
Q Consensus 245 g~--~rrl~vLSgG~----qqrv~IA~aL~~~P~VLILDEPgsg-------LD~~a~~~i--------~~~GvtVI~TtH 303 (660)
+. ..+...+|.|+ +|++.++++++.+|.++++|||+++ ||+.....+ .++|.+++.++|
T Consensus 80 ~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 80 GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 10 01223355564 3566777888888888888999988 887543332 235888888888
Q ss_pred Ch
Q 038101 304 GV 305 (660)
Q Consensus 304 ~~ 305 (660)
..
T Consensus 160 ~~ 161 (211)
T 3asz_A 160 QY 161 (211)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 119
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.83 E-value=1.4e-08 Score=97.91 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=60.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHcc----CCcEEEEeCCCCCccHHHHHHH------HhcCCEEEEEEcChhHHHHhcCcEEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVENH----MPQVIVIDEIGTKLEAMAASTI------AQRGIQLVATAHGVTIENLIMNPSLE 317 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~~----~P~VLILDEPgsgLD~~a~~~i------~~~GvtVI~TtH~~~l~~~i~dril~ 317 (660)
+++..|||||||+++||++++. .|+++|+|||+++||+.....+ ...+.++|++||+.... ..||+++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 4667899999999999999974 4699999999999999987775 23467899999998654 68999975
Q ss_pred E--EcCeE
Q 038101 318 M--LIGGV 323 (660)
Q Consensus 318 l--~~G~I 323 (660)
+ ..|..
T Consensus 139 v~~~~g~s 146 (173)
T 3kta_B 139 VSMRDGVS 146 (173)
T ss_dssp EEEETTEE
T ss_pred EEecCCEE
Confidence 4 34543
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.81 E-value=1.6e-08 Score=100.58 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=65.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCCCeEEEEcCCC---ccccCCCCCCC-----------CCCccccC-C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAN--DYKKRVMIVDTSS---EIGGNGDIPHP-----------GIGNARRM-Q 251 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--~~GkrV~~Vdq~~---eIa~~~~ip~~-----------~Lg~~rrl-~ 251 (660)
+++|++++|+||||||||||+++|+|++.+ ..+ .|.+..... +..+.+.+++. .+.....+ .
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 788999999999999999999999999875 222 122221110 11111111110 00000000 0
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHHHh---cCCEEEEEEcChhHHHH
Q 038101 252 VPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTIAQ---RGIQLVATAHGVTIENL 310 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~---~GvtVI~TtH~~~l~~~ 310 (660)
.+.+-.++. +. ..+..++++|+| ||+.++..+++ .|++|++++|+.+.+..
T Consensus 92 ~~yg~~~~~--v~-~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 92 NYYGTSREA--IE-QVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELDR 145 (219)
T ss_dssp EEEEEEHHH--HH-HHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHHH
T ss_pred ccCCCCHHH--HH-HHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHHH
Confidence 011111222 22 233468999999 99999888853 58999999999987654
No 121
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.80 E-value=1.7e-09 Score=117.71 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=76.3
Q ss_pred ccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHH
Q 038101 184 LLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVL 262 (660)
Q Consensus 184 iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~ 262 (660)
+|+++ ..+|++++|+|||||||||||++|+|++.+..| +|.++.+..++.. ..+.+..+. ..+ .++ -.-.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g-~I~~~ed~ie~~~-~~~~q~~v~--~~~-g~~----f~~~ 228 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSER-NILTVEDPIEFDI-DGIGQTQVN--PRV-DMT----FARG 228 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS-CEEEEESSCCSCC-SSSEEEECB--GGG-TBC----HHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCC-EEEEecccchhcc-CCcceEEEc--ccc-CcC----HHHH
Confidence 45555 467899999999999999999999999988755 5777766544311 001000010 011 011 1234
Q ss_pred HHHHHccCCcEEEEeCCCCCccHHHHHHHHhcCCEEEEEEcChh
Q 038101 263 IEAVENHMPQVIVIDEIGTKLEAMAASTIAQRGIQLVATAHGVT 306 (660)
Q Consensus 263 IA~aL~~~P~VLILDEPgsgLD~~a~~~i~~~GvtVI~TtH~~~ 306 (660)
+..++.++|++++++|+...+.+...-.++..|..++.+.|..+
T Consensus 229 lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~ 272 (418)
T 1p9r_A 229 LRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT 272 (418)
T ss_dssp HHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred HHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh
Confidence 55677799999999999876666555566678888877878654
No 122
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.79 E-value=1.3e-09 Score=123.52 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=63.6
Q ss_pred EEEEeEEEEECccccccccccccc----ccC---CcEEEEEcCCCCcHHHHHHHHHhcccc-CCCC------eEEEEcCC
Q 038101 165 GAIIGLTCRVGRAVSGSANLLQDL----VQD---GASLLFIGPPGVGKTTIIREIARVLAN-DYKK------RVMIVDTS 230 (660)
Q Consensus 165 LeI~~Lt~rygr~v~G~a~iL~dl----I~~---Ge~ilIlGPnGsGKTTLLR~IaglL~p-~~Gk------rV~~Vdq~ 230 (660)
+.+++|+..|+..+..+...++.+ +.. =..++|+|||||||||||++|+|++.| +.|. .+......
T Consensus 11 i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~ 90 (608)
T 3szr_A 11 VAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLV 90 (608)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECS
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCC
Confidence 467888888875422111222211 111 124899999999999999999999877 4442 11111111
Q ss_pred --Cccc-cCCCCCCC-CCCccccC-CCCC-----------HHHHHHHHHHHHHccCCcEEEEeCC------CCCccHHHH
Q 038101 231 --SEIG-GNGDIPHP-GIGNARRM-QVPN-----------SEMQHKVLIEAVENHMPQVIVIDEI------GTKLEAMAA 288 (660)
Q Consensus 231 --~eIa-~~~~ip~~-~Lg~~rrl-~vLS-----------gG~qqrv~IA~aL~~~P~VLILDEP------gsgLD~~a~ 288 (660)
.++. ..+.+++. .+.....+ ..+. +..++.+.++.+..+.|+++++||| +++||+...
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 91 NEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp SSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred ccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 1110 01111110 01000000 0000 0000001111222357999999999 899998776
Q ss_pred HHH----H-----hcCCEEEEEEcChhHH
Q 038101 289 STI----A-----QRGIQLVATAHGVTIE 308 (660)
Q Consensus 289 ~~i----~-----~~GvtVI~TtH~~~l~ 308 (660)
..+ . ..++++++++|+.+.+
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 544 1 2478999999997743
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.79 E-value=6.2e-09 Score=112.64 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=66.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHH--HhccccCC---CCeEEEEcCCCccccC--C-CCCCCCCCc-----c-ccCCCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREI--ARVLANDY---KKRVMIVDTSSEIGGN--G-DIPHPGIGN-----A-RRMQVPN 254 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~I--aglL~p~~---GkrV~~Vdq~~eIa~~--~-~ip~~~Lg~-----~-rrl~vLS 254 (660)
|..|++++|+||||||||||++.| +++++++. +..+.|++....+... . .....++.. . ......+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~ 254 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYN 254 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCC
Confidence 889999999999999999999955 45555432 3568888765432100 0 000011110 0 0111223
Q ss_pred HHH-HHHHH--HHHHHccCCcEEEEeCCCCCccHHHH------------HH-------H-HhcCCEEEEEEcCh
Q 038101 255 SEM-QHKVL--IEAVENHMPQVIVIDEIGTKLEAMAA------------ST-------I-AQRGIQLVATAHGV 305 (660)
Q Consensus 255 gG~-qqrv~--IA~aL~~~P~VLILDEPgsgLD~~a~------------~~-------i-~~~GvtVI~TtH~~ 305 (660)
... .+.+. .+.+..++|++||+|||++.+|.... .. + .+.|++||+++|..
T Consensus 255 ~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 255 ADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 322 11111 22233468999999999998875311 11 1 35699999999973
No 124
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.75 E-value=1.2e-08 Score=105.82 Aligned_cols=127 Identities=11% Similarity=0.036 Sum_probs=77.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc-CCCC----CCCCCCccccCCCCCHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG-NGDI----PHPGIGNARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~-~~~i----p~~~Lg~~rrl~vLSgG~qqrv~IA 264 (660)
.+|++++|+|||||||||+++.|++.+.+..|++|.+++....-.. ...+ ...++.. ....++ ...+.+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~---~~~~~~-~~l~~al~ 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL---EVCYTK-EEFQQAKE 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC---CBCSSH-HHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe---EecCCH-HHHHHHHH
Confidence 4689999999999999999999999998767889999987542100 0000 0011110 001222 23344444
Q ss_pred HHHccCCcEEEEeCCCCCccHHH---HHHH---H----hcCCEEEE-EEcChhHHHHhcCcEEEEEcCeEE
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMA---ASTI---A----QRGIQLVA-TAHGVTIENLIMNPSLEMLIGGVQ 324 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a---~~~i---~----~~GvtVI~-TtH~~~l~~~i~dril~l~~G~I~ 324 (660)
.+.+|+++|+| |.|+|... ..++ . ..++.+|+ ++|+...+..+++.+..+..+++.
T Consensus 179 --~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 179 --LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp --HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred --HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 45899999999 55555533 2222 1 22345555 579987777778876544455554
No 125
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=1.7e-07 Score=91.17 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=72.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc-------ccCCCCC-------CC--------CCC
Q 038101 188 LVQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI-------GGNGDIP-------HP--------GIG 245 (660)
Q Consensus 188 lI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eI-------a~~~~ip-------~~--------~Lg 245 (660)
-+.+|++++|+||||+|||||+..++...... +.++.|++..... ...+..+ .. .++
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 37889999999999999999977666544332 4567887654311 0001000 00 010
Q ss_pred cc---c-c-C-CCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCc--cHHHHHH--------HHhcCCEEEEEEcChhH--
Q 038101 246 NA---R-R-M-QVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKL--EAMAAST--------IAQRGIQLVATAHGVTI-- 307 (660)
Q Consensus 246 ~~---r-r-l-~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgL--D~~a~~~--------i~~~GvtVI~TtH~~~l-- 307 (660)
.. . . . ...+..+........+...+|+++++|+++..+ |...... +++.|++||+++|....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~ 177 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGER 177 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcc
Confidence 00 0 0 0 112221111112222233689999999999765 4421111 25679999999997764
Q ss_pred ------HHHhcCcEEEEE
Q 038101 308 ------ENLIMNPSLEML 319 (660)
Q Consensus 308 ------~~~i~dril~l~ 319 (660)
.+..+|.++.+.
T Consensus 178 ~~~~~~~~~~~D~vi~L~ 195 (247)
T 2dr3_A 178 GFGGPGVEHGVDGIIRLD 195 (247)
T ss_dssp CCC-CCHHHHSSEEEEEE
T ss_pred cccccccceeEEEEEEEE
Confidence 234567766654
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=2.5e-08 Score=102.95 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=30.3
Q ss_pred ccCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcChh
Q 038101 268 NHMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHGVT 306 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~~~ 306 (660)
..+|+|||+|||+. ||..+...+. ..++++|+++|+..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 55899999999999 9998877662 24789999999864
No 127
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.68 E-value=1.8e-09 Score=113.96 Aligned_cols=124 Identities=9% Similarity=0.060 Sum_probs=70.9
Q ss_pred ccC--CcEEEEEcCCCCcHHHHHHHHHhccccCC----CCeEEEEcC---CCcccc-CCCC------CC----------C
Q 038101 189 VQD--GASLLFIGPPGVGKTTIIREIARVLANDY----KKRVMIVDT---SSEIGG-NGDI------PH----------P 242 (660)
Q Consensus 189 I~~--Ge~ilIlGPnGsGKTTLLR~IaglL~p~~----GkrV~~Vdq---~~eIa~-~~~i------p~----------~ 242 (660)
+.+ |+.++|+||||||||||+++|+|++.+.. |+ + ++++ ...+.. ...+ ++ .
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~-i-~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~~t~~~ 242 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR-E-FVFEKLGGDEQAMQYSDYPQMALGHQRYIDYAVRHSH 242 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTH-H-HHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHH-H-HHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHhccC
Confidence 777 99999999999999999999999998875 43 1 2211 001100 0000 00 0
Q ss_pred CC--Cc----cccCCCCCHHHHHHHHHHHHH-ccCCcEEEEeC---CC------CCccHHHHHHH--------HhcCCEE
Q 038101 243 GI--GN----ARRMQVPNSEMQHKVLIEAVE-NHMPQVIVIDE---IG------TKLEAMAASTI--------AQRGIQL 298 (660)
Q Consensus 243 ~L--g~----~rrl~vLSgG~qqrv~IA~aL-~~~P~VLILDE---Pg------sgLD~~a~~~i--------~~~GvtV 298 (660)
.+ .. ......++.+++++..++++. .++|+++++|| |+ .++|...+..+ .+.|.+|
T Consensus 243 nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~i 322 (365)
T 1lw7_A 243 KIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPY 322 (365)
T ss_dssp SEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCC
T ss_pred CEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCE
Confidence 00 00 001112234555666666665 47999999999 64 35675543332 2348999
Q ss_pred EEEEcChhHHHHhcCcE
Q 038101 299 VATAHGVTIENLIMNPS 315 (660)
Q Consensus 299 I~TtH~~~l~~~i~dri 315 (660)
|+++|.. .++.+++.+
T Consensus 323 lilde~~-~~~r~~~~i 338 (365)
T 1lw7_A 323 IEIESPS-YLDRYNQVK 338 (365)
T ss_dssp EEEECSS-HHHHHHHHH
T ss_pred EEeCCCC-HHHHHHHHH
Confidence 9999863 455556554
No 128
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.66 E-value=3.6e-08 Score=105.28 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHc---------cCCcEEEEeCCCCCccHHHHHHH----HhcCCEEEEEEcChhHHHHhcCcEEEE
Q 038101 252 VPNSEMQHKVLIEAVEN---------HMPQVIVIDEIGTKLEAMAASTI----AQRGIQLVATAHGVTIENLIMNPSLEM 318 (660)
Q Consensus 252 vLSgG~qqrv~IA~aL~---------~~P~VLILDEPgsgLD~~a~~~i----~~~GvtVI~TtH~~~l~~~i~dril~l 318 (660)
.+|+||||+++||++++ .+|+|||||||+++||+..+..+ .+.+.++|++||. +. .|++++.+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~~i~~l 340 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAALTLRA 340 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCCEEEEE
Confidence 59999999999999999 89999999999999999988776 3445788888894 33 89999999
Q ss_pred EcCeEEEE
Q 038101 319 LIGGVQNV 326 (660)
Q Consensus 319 ~~G~I~~V 326 (660)
..|++...
T Consensus 341 ~~G~i~~~ 348 (359)
T 2o5v_A 341 QAGRFTPV 348 (359)
T ss_dssp ETTEEEEC
T ss_pred ECCEEEec
Confidence 99998653
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.66 E-value=5.3e-08 Score=102.64 Aligned_cols=131 Identities=23% Similarity=0.220 Sum_probs=81.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc----------c---cCCCCCC-CCCC----------
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI----------G---GNGDIPH-PGIG---------- 245 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eI----------a---~~~~ip~-~~Lg---------- 245 (660)
.+|++++|+||||||||||++.|+|++.+..| +|.+......- + +...+++ .++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 56899999999999999999999999998755 56665433110 0 0000000 0000
Q ss_pred -------------ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHH-HHHH-hcCCEEEEEEcCh-----
Q 038101 246 -------------NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAA-STIA-QRGIQLVATAHGV----- 305 (660)
Q Consensus 246 -------------~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~-~~i~-~~GvtVI~TtH~~----- 305 (660)
..-+.+....-+.+...+++++..++.++++|..+. .|.... ..+. ..|+++|+.||..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~~~~~~~it~iilTKlD~~a~~ 284 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQFNEAVKIDGIILTKLDADARG 284 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHHHHHHSCCCEEEEECGGGCSCC
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHHHHHhcCCCEEEEeCcCCccch
Confidence 000111122335556668899998999999996654 455443 3333 4699999999943
Q ss_pred ----hHHHHhcCcEEEEEcCe
Q 038101 306 ----TIENLIMNPSLEMLIGG 322 (660)
Q Consensus 306 ----~l~~~i~dril~l~~G~ 322 (660)
+......-|+.++-.|.
T Consensus 285 G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 285 GAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp HHHHHHHHHHTCCEEEEECSS
T ss_pred hHHHHHHHHHCCCEEEEeCCC
Confidence 23444556666666554
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.62 E-value=5.7e-08 Score=102.99 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=60.1
Q ss_pred cCCCCCHHHHHHHH------HHHHHccC-CcEEEEeCCCCCccHHHHHHHH----h--cCCEEEEEEcChhHHHHhcCcE
Q 038101 249 RMQVPNSEMQHKVL------IEAVENHM-PQVIVIDEIGTKLEAMAASTIA----Q--RGIQLVATAHGVTIENLIMNPS 315 (660)
Q Consensus 249 rl~vLSgG~qqrv~------IA~aL~~~-P~VLILDEPgsgLD~~a~~~i~----~--~GvtVI~TtH~~~l~~~i~dri 315 (660)
.+..+|+||+|+++ +|+++..+ |++||+|||+++||+..+..+. + .+.+||++||+..+ ..+||++
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~-~~~~d~~ 355 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL-EDVADVI 355 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG-GGGCSEE
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH-HhhCCEE
Confidence 45679999999885 46778889 9999999999999999987762 2 35699999999874 5789999
Q ss_pred EEEE-cCeE
Q 038101 316 LEML-IGGV 323 (660)
Q Consensus 316 l~l~-~G~I 323 (660)
+.+. .|++
T Consensus 356 ~~l~k~~~~ 364 (371)
T 3auy_A 356 INVKKDGNV 364 (371)
T ss_dssp EEEEESSSC
T ss_pred EEEEecCCe
Confidence 8886 3443
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.58 E-value=4.3e-09 Score=99.81 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=38.5
Q ss_pred eEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 038101 169 GLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222 (660)
Q Consensus 169 ~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk 222 (660)
+++++||+. .++.++ +.+|++++|+||||||||||+|+|+|++ +..|.
T Consensus 12 ~~~~~~g~~-----~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 12 FSMLRFGKK-----FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp HHHHHHHHH-----HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred HHHHHHHHH-----HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 445555543 566665 8999999999999999999999999999 76563
No 132
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.56 E-value=2.9e-08 Score=103.73 Aligned_cols=89 Identities=17% Similarity=0.272 Sum_probs=62.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc-CCCC----CCCCCCccccCCCCCHHHHHHH--
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG-NGDI----PHPGIGNARRMQVPNSEMQHKV-- 261 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~-~~~i----p~~~Lg~~rrl~vLSgG~qqrv-- 261 (660)
...|++++|+|||||||||+++.|++.+.+. |.+|.+++....-.+ ...+ ...++. .+...++++.+++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~ 176 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTFRAAAIEQLKIWGERVGAT---VISHSEGADPAAVAF 176 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTTCHHHHHHHHHHHHHHTCE---EECCSTTCCHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccccHHHHHHHHHHHHHcCCc---EEecCCccCHHHHHH
Confidence 4568999999999999999999999999875 567888765321100 0000 000111 1223466777777
Q ss_pred -HHHHHHccCCcEEEEeCCCC
Q 038101 262 -LIEAVENHMPQVIVIDEIGT 281 (660)
Q Consensus 262 -~IA~aL~~~P~VLILDEPgs 281 (660)
.+++++..+|+++|+|||+.
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 78888999999999999986
No 133
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.55 E-value=2e-07 Score=98.79 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=68.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc--ccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA--RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~--rrl~vLSgG~qqrv~IA~a 266 (660)
+..|++++|.||||+|||||+..++...... |.++.|++......... ....++... .-.+..+..+ .+.++.+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~~-a~~lG~~~~~l~i~~~~~~e~--~l~~~~~ 133 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPEY-AKKLGVDTDSLLVSQPDTGEQ--ALEIADM 133 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHH--HHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHHH-HHHcCCCHHHeEEecCCCHHH--HHHHHHH
Confidence 6689999999999999999999888665543 55788888754221000 000111100 0011223332 3344444
Q ss_pred Hc--cCCcEEEEeCCCCCc----------cH----HH------HHHH----HhcCCEEEEEEcChh
Q 038101 267 EN--HMPQVIVIDEIGTKL----------EA----MA------ASTI----AQRGIQLVATAHGVT 306 (660)
Q Consensus 267 L~--~~P~VLILDEPgsgL----------D~----~a------~~~i----~~~GvtVI~TtH~~~ 306 (660)
++ .+|++||+||+++.+ |. .+ ...+ .+.|++||+++|-..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 43 569999999999866 32 11 1112 467999999999654
No 134
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.52 E-value=1.3e-07 Score=101.80 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=60.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHc----cCCcEEEEeCCCCCccHHHHHHHH-------hcCCEEEEEEcChhHHHHhcCcEE
Q 038101 248 RRMQVPNSEMQHKVLIEAVEN----HMPQVIVIDEIGTKLEAMAASTIA-------QRGIQLVATAHGVTIENLIMNPSL 316 (660)
Q Consensus 248 rrl~vLSgG~qqrv~IA~aL~----~~P~VLILDEPgsgLD~~a~~~i~-------~~GvtVI~TtH~~~l~~~i~dril 316 (660)
+.+..+|+|||++++||++++ ..|+++|||||+++||+..+..+. ..|.++|++||+.... ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 345679999999999999999 579999999999999999877762 2378999999997654 5799988
Q ss_pred EEE
Q 038101 317 EML 319 (660)
Q Consensus 317 ~l~ 319 (660)
.+.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 135
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.49 E-value=1.1e-07 Score=98.32 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=67.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC-CCC----CCCCCCccccCCCCCHHHHHHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN-GDI----PHPGIGNARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~-~~i----p~~~Lg~~rrl~vLSgG~qqrv~IA~ 265 (660)
+|++++|+|+||+||||+++.|++.+++. +.+|.+++....-... ..+ ...++.....-...++..-++.+++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999875 5678888764321100 000 00011110000123444556788888
Q ss_pred HHccCCcEEEEeCC-CCCccHHHHHHH
Q 038101 266 VENHMPQVIVIDEI-GTKLEAMAASTI 291 (660)
Q Consensus 266 aL~~~P~VLILDEP-gsgLD~~a~~~i 291 (660)
+...+++++|+||| +.++|......+
T Consensus 176 ~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 176 ARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp HHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred HHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 88789999999999 678998766654
No 136
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.47 E-value=3.3e-07 Score=101.29 Aligned_cols=97 Identities=24% Similarity=0.394 Sum_probs=65.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..++|+||||+|||||+|+|++.. +..+..++..... . ...-.++++.+..++.+....|.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~----~~~f~~is~~~~~-------~--------~~~g~~~~~~r~lf~~A~~~~p~ 110 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA----NVPFFHISGSDFV-------E--------LFVGVGAARVRDLFAQAKAHAPC 110 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGGGTT-------T--------CCTTHHHHHHHHHHHHHHHTCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----CCCeeeCCHHHHH-------H--------HHhcccHHHHHHHHHHHHhcCCC
Confidence 458999999999999999999875 2344444432111 0 01123567888899999999999
Q ss_pred EEEEeCCCC----------CccHHHH---HHH--------HhcCCEEEEEEcChhHH
Q 038101 273 VIVIDEIGT----------KLEAMAA---STI--------AQRGIQLVATAHGVTIE 308 (660)
Q Consensus 273 VLILDEPgs----------gLD~~a~---~~i--------~~~GvtVI~TtH~~~l~ 308 (660)
+|+|||+.. +.|.... ..+ ...++.||++||..+.+
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 999999943 2333222 222 13578999999987643
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.45 E-value=2.3e-07 Score=101.00 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=83.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---c-----ccCCCCCC-----CCCCc---------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE---I-----GGNGDIPH-----PGIGN--------- 246 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e---I-----a~~~~ip~-----~~Lg~--------- 246 (660)
+.+|+.++|.|+||+|||||+..|++......|..|.|+..... + +...+++. -.+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 78999999999999999999999999887655677888865321 0 00001110 00100
Q ss_pred ----------cccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCcc--------HHHHHH----H----HhcCCEEEE
Q 038101 247 ----------ARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLE--------AMAAST----I----AQRGIQLVA 300 (660)
Q Consensus 247 ----------~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD--------~~a~~~----i----~~~GvtVI~ 300 (660)
......+|.++.+..+.+.+..++|++||+|+++.-.+ ...... + ++.|++||+
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~ 359 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA 359 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 01123467776654444444457899999999986542 122122 1 367999999
Q ss_pred EEc---------C--hh--------HHHHhcCcEEEEEcCe
Q 038101 301 TAH---------G--VT--------IENLIMNPSLEMLIGG 322 (660)
Q Consensus 301 TtH---------~--~~--------l~~~i~dril~l~~G~ 322 (660)
++| + .. .++..+|.++.+..+.
T Consensus 360 ~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 360 LSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp EECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred EecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 999 2 11 3445677777776544
No 138
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.43 E-value=3.9e-08 Score=107.40 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=75.7
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcE--EEEEcCCCCcHHHHHHHHHhccccC-------CC---CeEEEEcCC
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGAS--LLFIGPPGVGKTTIIREIARVLAND-------YK---KRVMIVDTS 230 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~--ilIlGPnGsGKTTLLR~IaglL~p~-------~G---krV~~Vdq~ 230 (660)
++.+ +++|+.. . ++++ +.+|++ ++|+|||||||||||++|+|+.-.. .+ ..++++.+.
T Consensus 18 ~~~~-~~~y~~~-----~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 18 PLAG-HVGFDSL-----P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp CCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC
T ss_pred EEee-EEEECCe-----e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec
Confidence 3445 6777654 4 7776 899999 9999999999999999999985211 11 246666654
Q ss_pred Cccc---------cCCCC-C----------------------CCCCC------ccccCC--C-----CCHH-HHHHHHHH
Q 038101 231 SEIG---------GNGDI-P----------------------HPGIG------NARRMQ--V-----PNSE-MQHKVLIE 264 (660)
Q Consensus 231 ~eIa---------~~~~i-p----------------------~~~Lg------~~rrl~--v-----LSgG-~qqrv~IA 264 (660)
..+. +.+.. . ..++. ...+++ . .+.+ ...-+.++
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieil 170 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTM 170 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHH
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHH
Confidence 3211 11110 0 00110 001110 0 0111 12237788
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEc
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAH 303 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH 303 (660)
.++.....||++|+++..|.+.....+ ...|+.|+.++.
T Consensus 171 k~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 171 KKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 888889999999999999887654433 456888887764
No 139
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.43 E-value=3.3e-07 Score=101.91 Aligned_cols=39 Identities=36% Similarity=0.497 Sum_probs=33.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
+..|++++|+|+||||||||++.|+|++.+..| +|.+..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g 328 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAA 328 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEec
Confidence 678999999999999999999999999988755 566653
No 140
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.38 E-value=2.6e-06 Score=86.03 Aligned_cols=75 Identities=28% Similarity=0.452 Sum_probs=54.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
..+..++|.||||+|||||++.|++.+ +..+..++...... ....+.+...+..+..+...
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~---------------~~~~~~~~~~~~~~~~~~~~ 112 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC----SATFLNISAASLTS---------------KYVGDGEKLVRALFAVARHM 112 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT----TCEEEEEESTTTSS---------------SSCSCHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh----CCCeEEeeHHHHhh---------------cccchHHHHHHHHHHHHHHc
Confidence 356899999999999999999999876 33444454322210 11234567778888888889
Q ss_pred CCcEEEEeCCCCCc
Q 038101 270 MPQVIVIDEIGTKL 283 (660)
Q Consensus 270 ~P~VLILDEPgsgL 283 (660)
.|.+|++||+..-.
T Consensus 113 ~~~vl~iDEid~l~ 126 (297)
T 3b9p_A 113 QPSIIFIDEVDSLL 126 (297)
T ss_dssp CSEEEEEETGGGTS
T ss_pred CCcEEEeccHHHhc
Confidence 99999999997643
No 141
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.32 E-value=1e-06 Score=91.14 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=67.7
Q ss_pred Cc--EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc---CCC-CCCCCCCccccCCCCCHHHH-HHHHHH
Q 038101 192 GA--SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG---NGD-IPHPGIGNARRMQVPNSEMQ-HKVLIE 264 (660)
Q Consensus 192 Ge--~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~---~~~-ip~~~Lg~~rrl~vLSgG~q-qrv~IA 264 (660)
+. +++|.||+|+|||||++.+++.+....+..+.+++....... ... +...+.. ......+...- .++.-.
T Consensus 42 ~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~l~~~ 119 (389)
T 1fnn_A 42 HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIP--FPRRGLSRDEFLALLVEH 119 (389)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCC--CCSSCCCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCcc--CCCCCCCHHHHHHHHHHH
Confidence 46 899999999999999999999886543456777764322100 000 0000000 00011222222 222111
Q ss_pred HHHccCCcEEEEeCCCCCccHHHHHHH-------Hh---cCCEEEEEEcChhHHHHh
Q 038101 265 AVENHMPQVIVIDEIGTKLEAMAASTI-------AQ---RGIQLVATAHGVTIENLI 311 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD~~a~~~i-------~~---~GvtVI~TtH~~~l~~~i 311 (660)
......|.||++||+... |......+ .. .++.+|+++|+..+...+
T Consensus 120 l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 122356899999999865 76665554 12 488999999988655443
No 142
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.28 E-value=2.4e-07 Score=100.82 Aligned_cols=113 Identities=12% Similarity=0.214 Sum_probs=70.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc-------CCCCeEEEEcCCC--cc-----ccCC-------CCCC------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAN-------DYKKRVMIVDTSS--EI-----GGNG-------DIPH------ 241 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p-------~~GkrV~~Vdq~~--eI-----a~~~-------~ip~------ 241 (660)
++.|+.++|+|+|||||||||+.|++.... +....++++.... .+ .+.. .+.+
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~ 233 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHI 233 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHH
Confidence 677899999999999999999999998421 0122344444322 11 0100 0000
Q ss_pred ---------CCCCccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHHHH---HH----HHhcCCEEEEEE-cC
Q 038101 242 ---------PGIGNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAMAA---ST----IAQRGIQLVATA-HG 304 (660)
Q Consensus 242 ---------~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~---~~----i~~~GvtVI~Tt-H~ 304 (660)
.++. ...+..+|.++++++.++++++..|.+|++ +.+|.... .. +.+.|.+++.+| |.
T Consensus 234 era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~ 308 (416)
T 1udx_A 234 ARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALT 308 (416)
T ss_dssp TSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred HHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 0111 122345789999999999999999999999 77776432 11 234577777655 44
Q ss_pred hh
Q 038101 305 VT 306 (660)
Q Consensus 305 ~~ 306 (660)
..
T Consensus 309 g~ 310 (416)
T 1udx_A 309 GA 310 (416)
T ss_dssp CT
T ss_pred cc
Confidence 33
No 143
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.27 E-value=3.3e-08 Score=102.32 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCC--CCeEEEEcCCCcccc------------------CCCCCCC--------
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDY--KKRVMIVDTSSEIGG------------------NGDIPHP-------- 242 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~--GkrV~~Vdq~~eIa~------------------~~~ip~~-------- 242 (660)
.+.+++|.|++|||||||++.|++++.+.. ...+.+|.+...+.. ..+.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~ 109 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQE 109 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHH
Confidence 468999999999999999999999987531 123444354432110 0111211
Q ss_pred -------CCC----cc----ccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCCCccHH
Q 038101 243 -------GIG----NA----RRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEAM 286 (660)
Q Consensus 243 -------~Lg----~~----rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgsgLD~~ 286 (660)
++. .. ..-..+|+||+||+.++.+...+|+|||+||++.++|+.
T Consensus 110 ~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 110 VLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp HHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred HHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 100 10 111356899999988763333389999999999999975
No 144
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.20 E-value=3.3e-06 Score=90.15 Aligned_cols=114 Identities=15% Similarity=0.141 Sum_probs=67.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCc--cccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGN--ARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~--~rrl~vLSgG~qqrv~IA~a 266 (660)
+..|++++|+||||||||||+..++..+... +.+|.|++........ .....++.. ..-....+..+.-...-..+
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 6788999999999999999999999987764 4578888775432100 000001110 00112233332222222223
Q ss_pred HccCCcEEEEeCCCCCcc--------------HHHH------HH----HHhcCCEEEEEEcC
Q 038101 267 ENHMPQVIVIDEIGTKLE--------------AMAA------ST----IAQRGIQLVATAHG 304 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD--------------~~a~------~~----i~~~GvtVI~TtH~ 304 (660)
....|+++|+|..++-.. ..++ +. +.+.|++||++.|-
T Consensus 136 ~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 347899999999875432 1111 11 14569999999886
No 145
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.19 E-value=6.2e-07 Score=86.86 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=35.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
..+|++++|+||||||||||+++|+|++.+. |..++++...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecC
Confidence 4679999999999999999999999999875 5567777654
No 146
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.15 E-value=4.5e-06 Score=83.63 Aligned_cols=74 Identities=24% Similarity=0.409 Sum_probs=49.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..+..++|.||||+|||||++.|+..+ +..+..+.....+.. ..-......+-.+..+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~----~~~~~~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 108 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET----NATFIRVVGSELVKK---------------FIGEGASLVKDIFKLAKE 108 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT----TCEEEEEEGGGGCCC---------------STTHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehHHHHHh---------------ccchHHHHHHHHHHHHHH
Confidence 4567889999999999999999999875 345555543222100 001112334455666777
Q ss_pred cCCcEEEEeCCCC
Q 038101 269 HMPQVIVIDEIGT 281 (660)
Q Consensus 269 ~~P~VLILDEPgs 281 (660)
..|.||+|||+..
T Consensus 109 ~~~~vl~iDEid~ 121 (285)
T 3h4m_A 109 KAPSIIFIDEIDA 121 (285)
T ss_dssp TCSEEEEEETTHH
T ss_pred cCCeEEEEECHHH
Confidence 8899999999953
No 147
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.15 E-value=7.3e-07 Score=103.70 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=81.6
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHhccccCC--CCeEEEEcCCCccc--------cCCCCC-CCCC--------
Q 038101 184 LLQDLVQDGASLLFIGPPGVGKTTIIREIARVLANDY--KKRVMIVDTSSEIG--------GNGDIP-HPGI-------- 244 (660)
Q Consensus 184 iL~dlI~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~--GkrV~~Vdq~~eIa--------~~~~ip-~~~L-------- 244 (660)
.+...+..|++++|+||+||||||++..++....... |.++.++....+++ ...+.. ...+
T Consensus 101 ~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~ 180 (773)
T 2xau_A 101 EFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN 180 (773)
T ss_dssp HHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE
T ss_pred HHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc
Confidence 3444578899999999999999999998866543322 45566554332211 000000 0000
Q ss_pred --CccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC-CccHHHHHH----HHh---cCCEEEEE-EcChhHHHHhcC
Q 038101 245 --GNARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT-KLEAMAAST----IAQ---RGIQLVAT-AHGVTIENLIMN 313 (660)
Q Consensus 245 --g~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs-gLD~~a~~~----i~~---~GvtVI~T-tH~~~l~~~i~d 313 (660)
....++.++++|+.++.+++..+..++++||+||+.. ++|...... +.. ....|++| ||+.+....+.+
T Consensus 181 ~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 181 KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp ECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred ccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 1112455678999999999999999999999999995 888654332 221 23345553 787665555544
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.10 E-value=1.4e-06 Score=82.74 Aligned_cols=29 Identities=28% Similarity=0.651 Sum_probs=26.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+.+|++++|+||||||||||+++|+|++.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999999999963
No 149
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.10 E-value=1.5e-07 Score=99.21 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=45.5
Q ss_pred EEEeEEEEECccccccccccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 166 AIIGLTCRVGRAVSGSANLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 166 eI~~Lt~rygr~v~G~a~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
++++++++|+.. .+++++ +.+|++++|+||||||||||++.|+|++.++.| +|.++.
T Consensus 31 e~~~~~~~~~~~-----~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g-~v~i~~ 90 (337)
T 2qm8_A 31 ESRRADHRAAVR-----DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH-KVAVLA 90 (337)
T ss_dssp TCSSHHHHHHHH-----HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred eeCCcccccChH-----HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC-EEEEEE
Confidence 355666777543 677776 789999999999999999999999999988755 566654
No 150
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.10 E-value=1e-05 Score=81.09 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=62.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC--CCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT--SSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq--~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~a 266 (660)
-.+|.++++.|++|+||||++..++.-+.. .|++|.++.. ... +...-..+.++... .+...+... .+..+
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~~~d~r-~~~~i~srlG~~~~-~~~~~~~~~----i~~~i 81 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEY-ADVKYLVFKPKIDTR-SIRNIQSRTGTSLP-SVEVESAPE----ILNYI 81 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCCGG-GCSSCCCCCCCSSC-CEEESSTHH----HHHHH
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEeccCch-HHHHHHHhcCCCcc-ccccCCHHH----HHHHH
Confidence 356889999999999999988777655543 4667777621 111 11111223333211 111112111 22223
Q ss_pred Hc----cCCcEEEEeCCCCCccHHH---HHHHHhcCCEEEEEEcC
Q 038101 267 EN----HMPQVIVIDEIGTKLEAMA---ASTIAQRGIQLVATAHG 304 (660)
Q Consensus 267 L~----~~P~VLILDEPgsgLD~~a---~~~i~~~GvtVI~TtH~ 304 (660)
.. .+|++|++||.-. ++... ...+++.|+.||++-|+
T Consensus 82 ~~~~~~~~~dvViIDEaQ~-l~~~~ve~l~~L~~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQF-FDDRICEVANILAENGFVVIISGLD 125 (223)
T ss_dssp HSTTSCTTCCEEEECSGGG-SCTHHHHHHHHHHHTTCEEEEECCS
T ss_pred HHHhhCCCCCEEEEecCcc-CcHHHHHHHHHHHhCCCeEEEEecc
Confidence 22 3599999999974 44433 34456789999999994
No 151
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=1.2e-06 Score=90.11 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCC--CCeEEEEcCCCccc---cCCC-CCCCCCCccccCCCCCHHHHHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDY--KKRVMIVDTSSEIG---GNGD-IPHPGIGNARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~--GkrV~~Vdq~~eIa---~~~~-ip~~~Lg~~rrl~vLSgG~qqrv~IA 264 (660)
.+.+++|.||+|+|||||++.+++.+.... +..+.+++...... .... ....+.. ......+..........
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~l~~ 121 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK--VPFTGLSIAELYRRLVK 121 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCC--CCSSSCCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCC--CCCCCCCHHHHHHHHHH
Confidence 367899999999999999999999875432 34566665321100 0000 0000110 00111222322222222
Q ss_pred HHH-ccCCcEEEEeCCCCCcc---HHHHHHH---H----hcCCEEEEEEcChhHHH
Q 038101 265 AVE-NHMPQVIVIDEIGTKLE---AMAASTI---A----QRGIQLVATAHGVTIEN 309 (660)
Q Consensus 265 ~aL-~~~P~VLILDEPgsgLD---~~a~~~i---~----~~GvtVI~TtH~~~l~~ 309 (660)
... ...|.+|++||+....+ ......+ . ..++.+|+++|...+..
T Consensus 122 ~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 122 AVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp HHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 222 23489999999976442 2222222 2 33688999999876433
No 152
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.08 E-value=1.8e-06 Score=92.39 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=28.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc-cCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA-NDY 220 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~-p~~ 220 (660)
...|++++|+||||||||||++.|+|.+. +..
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~ 244 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNEILT 244 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhcccccccc
Confidence 45799999999999999999999999987 653
No 153
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.08 E-value=2.1e-07 Score=96.28 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=33.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc--cCCCCeEEEEcC
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLA--NDYKKRVMIVDT 229 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~--p~~GkrV~~Vdq 229 (660)
.+|++++|+||||||||||+++|+|++. ++.| .|.+++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G-~i~vi~~ 118 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR-RVELITT 118 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC-CEEEEEG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC-eEEEEec
Confidence 7889999999999999999999999987 7666 4655544
No 154
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.07 E-value=6.3e-06 Score=84.11 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=48.1
Q ss_pred cccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHH--HH
Q 038101 183 NLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM--QH 259 (660)
Q Consensus 183 ~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~--qq 259 (660)
.+++++ +.....++|+||||||||||+++|++.+.+ ....++..... ....+.. +-
T Consensus 34 ~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~-----------------~~~~~~~~~~i 92 (274)
T 2x8a_A 34 DQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELL-----------------NMYVGESERAV 92 (274)
T ss_dssp HHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTC-----------------SSTTHHHHHHH
T ss_pred HHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHH-----------------hhhhhHHHHHH
Confidence 455555 332233999999999999999999998754 23344322111 0111111 22
Q ss_pred HHHHHHHHccCCcEEEEeCCCCC
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsg 282 (660)
+.....+....|.++++||+-..
T Consensus 93 ~~vf~~a~~~~p~i~~~Deid~~ 115 (274)
T 2x8a_A 93 RQVFQRAKNSAPCVIFFDEVDAL 115 (274)
T ss_dssp HHHHHHHHHTCSEEEEEETCTTT
T ss_pred HHHHHHHHhcCCCeEeeehhhhh
Confidence 23344455678999999999753
No 155
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.07 E-value=1.4e-06 Score=98.32 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=33.3
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCC
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDY 220 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~ 220 (660)
.+++.+ +..|+.++|+||||||||||++.|++++.+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 566655 88999999999999999999999999987654
No 156
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=1.8e-05 Score=86.76 Aligned_cols=74 Identities=22% Similarity=0.438 Sum_probs=52.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..-..++|.||||||||+|.++||+.+ +..+..+..+..+. ...-.+...-+..+..|..
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~s~l~s---------------k~~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPASGIVD---------------KYIGESARIIREMFAYAKE 272 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGTCC---------------SSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEehhhhcc---------------ccchHHHHHHHHHHHHHHh
Confidence 4455789999999999999999999875 44566665433221 0111233455677788888
Q ss_pred cCCcEEEEeCCCC
Q 038101 269 HMPQVIVIDEIGT 281 (660)
Q Consensus 269 ~~P~VLILDEPgs 281 (660)
+.|.||++||+-+
T Consensus 273 ~~P~IifiDEiDa 285 (437)
T 4b4t_L 273 HEPCIIFMDEVDA 285 (437)
T ss_dssp SCSEEEEEECCCS
T ss_pred cCCceeeeecccc
Confidence 9999999999953
No 157
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.02 E-value=2.7e-05 Score=77.21 Aligned_cols=69 Identities=28% Similarity=0.450 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
...++|+||||+|||||++.|++.+. ..+..++..... ...++ ....+-+..+..+....|
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~----~~~~~i~~~~~~-------~~~~~--------~~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK----VPFFTISGSDFV-------EMFVG--------VGASRVRDMFEQAKKAAP 105 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT----CCEEEECSCSST-------TSCCC--------CCHHHHHHHHHHHHTTCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC----CCEEEEeHHHHH-------HHhhh--------hhHHHHHHHHHHHHHcCC
Confidence 34689999999999999999998763 234455432211 00011 112233445566667789
Q ss_pred cEEEEeCC
Q 038101 272 QVIVIDEI 279 (660)
Q Consensus 272 ~VLILDEP 279 (660)
.++++||+
T Consensus 106 ~il~iDei 113 (257)
T 1lv7_A 106 CIIFIDEI 113 (257)
T ss_dssp EEEEETTH
T ss_pred eeehhhhh
Confidence 99999998
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.02 E-value=1.5e-06 Score=94.60 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+..++|.||||+|||||+++|++.+... .+..+.+++....... + ...+.... ...+...+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~--------~--~~~~~~~~-----~~~~~~~~~~~ 194 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND--------L--VDSMKEGK-----LNEFREKYRKK 194 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH--------H--HHHHHTTC-----HHHHHHHHTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH--------H--HHHHHccc-----HHHHHHHhcCC
Confidence 4689999999999999999999887432 2456777654321100 0 00000000 11122333348
Q ss_pred CcEEEEeCCCCCccH-HHHHHH-------HhcCCEEEEEEcCh
Q 038101 271 PQVIVIDEIGTKLEA-MAASTI-------AQRGIQLVATAHGV 305 (660)
Q Consensus 271 P~VLILDEPgsgLD~-~a~~~i-------~~~GvtVI~TtH~~ 305 (660)
|++|++||+..-.+. .....+ .+.|.++|+++|..
T Consensus 195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 195 VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 999999999865542 222222 46789999999874
No 159
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.00 E-value=2.4e-06 Score=86.19 Aligned_cols=107 Identities=18% Similarity=0.232 Sum_probs=61.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC----cccc-CCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS----EIGG-NGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~----eIa~-~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
++.+.|++|+||||++-.++..+.. .|.+|.+++... +... ..+++.... ....+.+.......+..++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~~~~al~~gl~~~~~----~~~~~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRAETEALLNGLPQQPL----LRTEYRGMTLEEMDLDALLK 82 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCHHHHHHHTTSCBCCC----EEEEETTEEEEECCHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCChhHHHHhcCccccCc----ceeecCCcccccccHHHHHh
Confidence 5788999999999998888776654 366776655432 1111 111111100 00011111111122344455
Q ss_pred cCCcEEEEeCCCCC-cc-------HHHHHHHHhcCCEEEEEEcCh
Q 038101 269 HMPQVIVIDEIGTK-LE-------AMAASTIAQRGIQLVATAHGV 305 (660)
Q Consensus 269 ~~P~VLILDEPgsg-LD-------~~a~~~i~~~GvtVI~TtH~~ 305 (660)
.+|+++|+||++.. .+ .+....+.+.|+.|++|+|-.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlq 127 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQ 127 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGG
T ss_pred cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcccc
Confidence 68999999999952 22 222344578899999999733
No 160
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=6.5e-06 Score=84.43 Aligned_cols=73 Identities=22% Similarity=0.417 Sum_probs=48.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..+..++|.||||+|||||+++|++.+. ..+..++...... ...+.. ....+..+..+..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~----~~~i~v~~~~l~~-------------~~~g~~--~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISIKGPELLT-------------MWFGES--EANVREIFDKARQ 106 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT----CEEEEECHHHHHH-------------HHHTTC--TTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC----CCEEEEEhHHHHh-------------hhcCch--HHHHHHHHHHHHh
Confidence 56788999999999999999999998763 3444443221110 000111 1223445666777
Q ss_pred cCCcEEEEeCCC
Q 038101 269 HMPQVIVIDEIG 280 (660)
Q Consensus 269 ~~P~VLILDEPg 280 (660)
..|.+|++||+.
T Consensus 107 ~~p~il~iDEid 118 (301)
T 3cf0_A 107 AAPCVLFFDELD 118 (301)
T ss_dssp TCSEEEEECSTT
T ss_pred cCCeEEEEEChH
Confidence 889999999986
No 161
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.99 E-value=5.5e-06 Score=90.65 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc----------cCCCCCCCCCCccccCCCCCHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIG----------GNGDIPHPGIGNARRMQVPNSEMQHK 260 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa----------~~~~ip~~~Lg~~rrl~vLSgG~qqr 260 (660)
++.+++++|||||||||++..|++.+... |++|.+++....-. ...++|... .....++..-.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~-----~~~~~dp~~i~~ 169 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYG-----EPNNQNPIEIAK 169 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEEC-----CTTCSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCceee-----ccccCCHHHHHH
Confidence 46899999999999999999999999864 77888887542111 001111111 011123332233
Q ss_pred HHHHHHHccCCcEEEEeCCCC-C--ccHHHHHHHH-------hcCCEEEEEEcC
Q 038101 261 VLIEAVENHMPQVIVIDEIGT-K--LEAMAASTIA-------QRGIQLVATAHG 304 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgs-g--LD~~a~~~i~-------~~GvtVI~TtH~ 304 (660)
-.++.+...+++++|+|+|+. . .|.....++. ...+.+++.++.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 456666667999999999994 5 6766655542 134555555553
No 162
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.99 E-value=1e-05 Score=94.43 Aligned_cols=104 Identities=23% Similarity=0.394 Sum_probs=65.2
Q ss_pred cccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHH
Q 038101 185 LQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 185 L~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~I 263 (660)
+.++ +..++.++|+||||||||||+++|++.+. ..+..++...... .. .-....+-+..+
T Consensus 230 ~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~----~~~i~v~~~~l~~-------------~~--~g~~~~~l~~vf 290 (806)
T 1ypw_A 230 FKAIGVKPPRGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMS-------------KL--AGESESNLRKAF 290 (806)
T ss_dssp GTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT----CEEEEEEHHHHSS-------------SS--TTHHHHHHHHHH
T ss_pred HHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC----CcEEEEEchHhhh-------------hh--hhhHHHHHHHHH
Confidence 3444 67889999999999999999999999863 3344444321110 00 011223444556
Q ss_pred HHHHccCCcEEEEeCCCCCc----------cHHHHHHH--------HhcCCEEEEEEcChhH
Q 038101 264 EAVENHMPQVIVIDEIGTKL----------EAMAASTI--------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgL----------D~~a~~~i--------~~~GvtVI~TtH~~~l 307 (660)
..+....|.+|++||+...+ +......+ ...++.+|+++|..+.
T Consensus 291 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 291 EEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp HHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTT
T ss_pred HHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchh
Confidence 66777889999999994322 12222222 1246788889987654
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.98 E-value=2.4e-06 Score=81.32 Aligned_cols=33 Identities=21% Similarity=0.540 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeE
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRV 224 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV 224 (660)
|++++|+||||||||||+++|++++.+..+..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~ 33 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSV 33 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEe
Confidence 568999999999999999999999976544433
No 164
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.97 E-value=3.4e-06 Score=79.40 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=25.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
+.+|++++|+||||||||||++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 678999999999999999999999998
No 165
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.97 E-value=8.5e-06 Score=90.89 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=70.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHh-c-cccCCC-CeEEEEcCC-CccccCCCCCCCC--CC-cc----ccCCCCCHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIAR-V-LANDYK-KRVMIVDTS-SEIGGNGDIPHPG--IG-NA----RRMQVPNSEM 257 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iag-l-L~p~~G-krV~~Vdq~-~eIa~~~~ip~~~--Lg-~~----rrl~vLSgG~ 257 (660)
+.++.+++|.|++||||||+|+.|+. + .....+ -++..+|-. .++....++||.. +- .. +.+..+-..|
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~~~~Em 243 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEM 243 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHHHHHHH
Confidence 56689999999999999999999875 2 232222 356666643 3455555677752 11 10 0011112234
Q ss_pred HHHHHHHH----------------------------------------HHccCCc-EEEEeCCCCCccHHH--H----HH
Q 038101 258 QHKVLIEA----------------------------------------VENHMPQ-VIVIDEIGTKLEAMA--A----ST 290 (660)
Q Consensus 258 qqrv~IA~----------------------------------------aL~~~P~-VLILDEPgsgLD~~a--~----~~ 290 (660)
.+|..+.. ++...|. +|++||+..-++... . ..
T Consensus 244 erR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~ 323 (512)
T 2ius_A 244 ERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIAR 323 (512)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHH
Confidence 44432211 1234676 899999988776322 1 11
Q ss_pred H----HhcCCEEEEEEcChh
Q 038101 291 I----AQRGIQLVATAHGVT 306 (660)
Q Consensus 291 i----~~~GvtVI~TtH~~~ 306 (660)
+ +..|+.+|++||..+
T Consensus 324 Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 324 LAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHCGGGTEEEEEEESCCC
T ss_pred HHHHhhhCCcEEEEEecCCc
Confidence 2 345999999999976
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.96 E-value=1.3e-07 Score=102.30 Aligned_cols=52 Identities=12% Similarity=-0.014 Sum_probs=41.4
Q ss_pred CC--cEEEEeCCCCCccHHHHHHH--------HhcCCEEEEEEcChhHHHHhcCcEE-EEEcC-eE
Q 038101 270 MP--QVIVIDEIGTKLEAMAASTI--------AQRGIQLVATAHGVTIENLIMNPSL-EMLIG-GV 323 (660)
Q Consensus 270 ~P--~VLILDEPgsgLD~~a~~~i--------~~~GvtVI~TtH~~~l~~~i~dril-~l~~G-~I 323 (660)
+| +++++||++..+|+...... ...|.+++ +|....+..+|+++. .+..| ++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~ 202 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQP 202 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCce
Confidence 78 99999999999999886543 23366654 999999999999998 77778 65
No 167
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=2.3e-05 Score=85.57 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=50.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.....++|.||||||||+|.++||+.+ +..+..++.+..+. .. .-.....-+-.+..|..
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~~~l~~-------~~--------~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNGSEFVH-------KY--------LGEGPRMVRDVFRLARE 263 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEGGGTCC-------SS--------CSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecchhhc-------cc--------cchhHHHHHHHHHHHHH
Confidence 3445679999999999999999999876 45566665432221 01 11122344566778888
Q ss_pred cCCcEEEEeCCC
Q 038101 269 HMPQVIVIDEIG 280 (660)
Q Consensus 269 ~~P~VLILDEPg 280 (660)
+.|.||++||+-
T Consensus 264 ~aP~IifiDEiD 275 (428)
T 4b4t_K 264 NAPSIIFIDEVD 275 (428)
T ss_dssp TCSEEEEEECTH
T ss_pred cCCCeeechhhh
Confidence 999999999983
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.96 E-value=4e-06 Score=80.52 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=33.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
..+|++++|+|||||||||+++.|++.+. ..|..+.+++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 57899999999999999999999999987 44654445553
No 169
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.94 E-value=1.9e-06 Score=87.48 Aligned_cols=48 Identities=29% Similarity=0.364 Sum_probs=31.8
Q ss_pred eEEEEeE-EEEE-Cccccccccccccc---ccC---CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 164 KGAIIGL-TCRV-GRAVSGSANLLQDL---VQD---GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 164 ~LeI~~L-t~ry-gr~v~G~a~iL~dl---I~~---Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++++|| +++| +.. .+|+++ +.+ |++++|+|++||||||+++.|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~-----~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQ-----QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------C-----HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcc-----hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999 9999 544 788888 777 9999999999999999999999876
No 170
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=2.5e-05 Score=84.79 Aligned_cols=74 Identities=23% Similarity=0.440 Sum_probs=51.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.....++|.||||||||+|.++||+.. +..+..+..+..+. ..+-.+...-|-.+..|..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~s---------------k~vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSGAELVQ---------------KYIGEGSRMVRELFVMARE 239 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEGGGGSC---------------SSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEhHHhhc---------------cccchHHHHHHHHHHHHHH
Confidence 3445679999999999999999999875 44565555433221 0111123344567788888
Q ss_pred cCCcEEEEeCCCC
Q 038101 269 HMPQVIVIDEIGT 281 (660)
Q Consensus 269 ~~P~VLILDEPgs 281 (660)
+.|.||++||+-+
T Consensus 240 ~aP~IIFiDEiDa 252 (405)
T 4b4t_J 240 HAPSIIFMDEIDS 252 (405)
T ss_dssp TCSEEEEEESSSC
T ss_pred hCCceEeeecchh
Confidence 9999999999864
No 171
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.92 E-value=5.6e-06 Score=91.73 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=34.5
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk 222 (660)
.+|+++ +.+ ++++|+|||||||||||++|+|++.|+.|.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 456666 788 999999999999999999999999998774
No 172
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.92 E-value=5e-06 Score=85.37 Aligned_cols=96 Identities=9% Similarity=0.106 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
+..++|.||+|+|||||++.|++.+... +..+.+++....... ....+..+... .+. ....++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~~~~~-------------~~~~~~~~~~~--~~~-~~~~~~ 99 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADDFAQA-------------MVEHLKKGTIN--EFR-NMYKSV 99 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHH-------------HHHHHHHTCHH--HHH-HHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHH-------------HHHHHHcCcHH--HHH-HHhcCC
Confidence 4689999999999999999999887544 556777754321100 00000000000 011 112469
Q ss_pred cEEEEeCCCCCc-cHHHHHHH-------HhcCCEEEEEEcC
Q 038101 272 QVIVIDEIGTKL-EAMAASTI-------AQRGIQLVATAHG 304 (660)
Q Consensus 272 ~VLILDEPgsgL-D~~a~~~i-------~~~GvtVI~TtH~ 304 (660)
++|++||+..-. +......+ .+.|..+|++++.
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999997522 22222222 4567778887763
No 173
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.89 E-value=4.1e-06 Score=82.08 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=20.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHH-hccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIA-RVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Ia-glL~ 217 (660)
+.+|++++|+||||||||||+++|+ +++.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7889999999999999999999999 9874
No 174
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.88 E-value=4.5e-06 Score=80.71 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.+|+.++|+||||||||||+++|+|++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999999999875
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.87 E-value=3.3e-05 Score=75.87 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=46.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.....++|.||||+|||||++.|+..+ +..+..++...... .. .-....+.+-.+..+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~a~~~ 97 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGAEFVE--------------VI-GGLGAARVRSLFKEARAR 97 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETTTTSS--------------SS-TTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechHHHHh--------------hc-cChhHHHHHHHHHHHHhc
Confidence 345678999999999999999999875 23455554432210 00 011223344556667777
Q ss_pred CCcEEEEeCCCC
Q 038101 270 MPQVIVIDEIGT 281 (660)
Q Consensus 270 ~P~VLILDEPgs 281 (660)
.|.+|++||+..
T Consensus 98 ~~~vl~iDeid~ 109 (262)
T 2qz4_A 98 APCIVYIDEIDA 109 (262)
T ss_dssp CSEEEEEECC--
T ss_pred CCeEEEEeCcch
Confidence 899999999965
No 176
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.85 E-value=5.8e-05 Score=79.39 Aligned_cols=71 Identities=32% Similarity=0.419 Sum_probs=48.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.....++|.||+|+|||||++.|+..+ +..+..++....+.. . .-......+..+..+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l~~~-------------~--~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS----GATFFSISASSLTSK-------------W--VGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT----TCEEEEEEGGGGCCS-------------S--TTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----CCeEEEEehHHhhcc-------------c--cchHHHHHHHHHHHHHhc
Confidence 445789999999999999999999875 345555554322110 0 111233445566677778
Q ss_pred CCcEEEEeCC
Q 038101 270 MPQVIVIDEI 279 (660)
Q Consensus 270 ~P~VLILDEP 279 (660)
.|.||+|||+
T Consensus 176 ~~~vl~iDEi 185 (357)
T 3d8b_A 176 QPAVIFIDEI 185 (357)
T ss_dssp CSEEEEEETH
T ss_pred CCeEEEEeCc
Confidence 8999999999
No 177
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.85 E-value=4.2e-05 Score=81.13 Aligned_cols=110 Identities=10% Similarity=0.128 Sum_probs=76.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---c-----ccCCCCCCCCCCccccCCCCCHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE---I-----GGNGDIPHPGIGNARRMQVPNSEMQHK 260 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e---I-----a~~~~ip~~~Lg~~rrl~vLSgG~qqr 260 (660)
+.+|+.++|.|+||+|||||+..++..... .|..|.|+.-... + ....+++. .. -+...++.++.++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~---~~-l~~g~Ls~~e~~~ 117 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSAEQLALRALSDLTSINM---HD-LESGRLDDDQWEN 117 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCHHHHHHHHHHHHHCCCH---HH-HHHTCCCHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHHHHhhCCCH---HH-HhcCCCCHHHHHH
Confidence 788999999999999999999999887665 4678888764321 0 00011111 00 1225689999999
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHH--HHHH-Hhc-CCEEEEEEc
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMA--ASTI-AQR-GIQLVATAH 303 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a--~~~i-~~~-GvtVI~TtH 303 (660)
+..|...+.++.+.|.|+|+..++-.. ++.+ .+. |..+|++=|
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999999988999999999976554322 2223 344 788888764
No 178
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.85 E-value=9.7e-06 Score=80.27 Aligned_cols=33 Identities=36% Similarity=0.804 Sum_probs=26.2
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.++.++ +..| ++|+||||||||||+++|++.+.
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 344444 3444 99999999999999999999874
No 179
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.85 E-value=4.5e-05 Score=80.26 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccC-------CCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLAND-------YKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-------~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~I 263 (660)
..-.++|+|+||+|||||++.|++..... ....++.++....-....+. .|+.. ......+.++++.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt--~G~~~-~~~~~~~~~~~~~~~- 241 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDT--PGLLD-RPISERNEIEKQAIL- 241 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEEC--TTTSS-SCSTTSCHHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeC--CCccc-cchhhhhHHHHHHHH-
Confidence 34689999999999999999999865321 01112222211000000001 12211 234556778776654
Q ss_pred HHHHccCCcEEEEe-CCCCCccHHHHHHH----Hh--cCCEEEEEE--cChh
Q 038101 264 EAVENHMPQVIVID-EIGTKLEAMAASTI----AQ--RGIQLVATA--HGVT 306 (660)
Q Consensus 264 A~aL~~~P~VLILD-EPgsgLD~~a~~~i----~~--~GvtVI~Tt--H~~~ 306 (660)
+.+...++-++++| +++.++|......+ .. .+..+|++. ||..
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 44445677788999 99988887765443 22 277777777 7764
No 180
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=4.2e-05 Score=84.43 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=53.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..-..++|.||||||||+|.++||+.+ +..+..+.....+. ..+-.+...-|..+..|..
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~s~L~s---------------k~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIGSELVQ---------------KYVGEGARMVRELFEMART 300 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCC---------------CSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEhHHhhc---------------ccCCHHHHHHHHHHHHHHh
Confidence 4556889999999999999999999875 34555555432221 0111233455677888889
Q ss_pred cCCcEEEEeCCCC
Q 038101 269 HMPQVIVIDEIGT 281 (660)
Q Consensus 269 ~~P~VLILDEPgs 281 (660)
+.|.||++||+-+
T Consensus 301 ~aP~IIfiDEiDa 313 (467)
T 4b4t_H 301 KKACIIFFDEIDA 313 (467)
T ss_dssp TCSEEEEEECCTT
T ss_pred cCCceEeeccccc
Confidence 9999999999964
No 181
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.85 E-value=7.5e-07 Score=89.43 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=39.9
Q ss_pred ccCceEEEEeEEEEECccccccccccccc-ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 038101 160 IRNRKGAIIGLTCRVGRAVSGSANLLQDL-VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222 (660)
Q Consensus 160 irn~~LeI~~Lt~rygr~v~G~a~iL~dl-I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk 222 (660)
|+-..+++.|++..++. ++ +.+ ++++|+|||||||||||++|+|++.++.|.
T Consensus 5 ~k~~~l~l~~~~~~~~~----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~ 57 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFAR----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTL 57 (227)
T ss_dssp CEEEEEEEEEETTEEEE----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT
T ss_pred ceeeEEEEEeeecccCC----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCe
Confidence 44445678888766543 23 444 788999999999999999999999988763
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.84 E-value=9.2e-06 Score=77.06 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND 219 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~ 219 (660)
+.+|++++|+|||||||||+++.|++.+.++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 4679999999999999999999999998553
No 183
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.84 E-value=3.2e-05 Score=70.65 Aligned_cols=27 Identities=37% Similarity=0.679 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.+..++|.||+|+|||||++.++..+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999998764
No 184
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.82 E-value=2.1e-05 Score=82.42 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=58.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc-------CCCC-CCCCCCcc-ccCCCCCHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG-------NGDI-PHPGIGNA-RRMQVPNSEMQH 259 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~-------~~~i-p~~~Lg~~-rrl~vLSgG~qq 259 (660)
+.+|++++|+|+||+||||++..|++.+++. |.+|.+++....-.. .... ...+++-. .......+....
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~ 180 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVV 180 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHH
Confidence 4678999999999999999999999999875 667888876431100 0000 01111100 001122333333
Q ss_pred HHHHHHHHccCCcEEEEeCCCCC
Q 038101 260 KVLIEAVENHMPQVIVIDEIGTK 282 (660)
Q Consensus 260 rv~IA~aL~~~P~VLILDEPgsg 282 (660)
.-.+..++..+.|++|+|=|+..
T Consensus 181 ~~~l~~~~~~~yD~VIIDTpg~l 203 (320)
T 1zu4_A 181 FDAIKKAKEQNYDLLLIDTAGRL 203 (320)
T ss_dssp HHHHHHHHHTTCSEEEEECCCCG
T ss_pred HHHHHHHHhcCCCEEEEcCCCcc
Confidence 33455556788999999999864
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.81 E-value=3e-05 Score=74.23 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
.+..++|.||+|+|||||++.++..+... +..+.+++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHH
Confidence 57899999999999999999999887543 5567777653
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.81 E-value=4.5e-05 Score=81.20 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=65.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc--ccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA--RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~--rrl~vLSgG~qqrv~IA~a 266 (660)
+..|.++.|.|+||+|||||+..++..... .|.+|.|++....+.... ....++... .-.+..+..+.....-..+
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998876543 356789998753221000 000011100 0011122332222222223
Q ss_pred HccCCcEEEEeCCCCCcc--------------HHH------HHHH----HhcCCEEEEEEcChh
Q 038101 267 ENHMPQVIVIDEIGTKLE--------------AMA------ASTI----AQRGIQLVATAHGVT 306 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD--------------~~a------~~~i----~~~GvtVI~TtH~~~ 306 (660)
....+++||+|.++.-.. ..+ .+.+ .+.|++||++.|-..
T Consensus 138 ~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~ 201 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 201 (356)
T ss_dssp HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---
T ss_pred hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 357899999999986431 111 1111 567999999998654
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.81 E-value=5.8e-05 Score=78.52 Aligned_cols=74 Identities=24% Similarity=0.432 Sum_probs=49.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.....++|.||||+|||||++.|+..+. +..+..+.....+.. ..+. + ...-+-.+..+...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~---~~~~~~i~~~~l~~~-------------~~g~-~-~~~~~~lf~~a~~~ 104 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVSK-------------WLGE-S-EKLVKNLFQLAREN 104 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT---SCEEEEEECCSSCCS-------------SCCS-C-HHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC---CCcEEEEEhHHHHhh-------------hhhH-H-HHHHHHHHHHHHhc
Confidence 4457899999999999999999998762 345555554322110 1111 1 23344455666778
Q ss_pred CCcEEEEeCCCC
Q 038101 270 MPQVIVIDEIGT 281 (660)
Q Consensus 270 ~P~VLILDEPgs 281 (660)
.|.||++||+..
T Consensus 105 ~~~vl~iDEid~ 116 (322)
T 1xwi_A 105 KPSIIFIDEIDS 116 (322)
T ss_dssp SSEEEEEETTTG
T ss_pred CCcEEEeecHHH
Confidence 999999999964
No 188
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=4.8e-05 Score=83.30 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=52.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.....++|.||||||||+|.++||+.+ +..+..+..+..+. ...-.....-|..+..|..
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~s~l~s---------------k~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVGSELIQ---------------KYLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEESGGGCC---------------SSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEHHHhhh---------------ccCchHHHHHHHHHHHHHh
Confidence 4445789999999999999999999875 34555555432220 0111233455677888888
Q ss_pred cCCcEEEEeCCCC
Q 038101 269 HMPQVIVIDEIGT 281 (660)
Q Consensus 269 ~~P~VLILDEPgs 281 (660)
+.|.||++||+-+
T Consensus 274 ~aP~IIfiDEiDa 286 (437)
T 4b4t_I 274 NAPSIVFIDEIDA 286 (437)
T ss_dssp TCSEEEEEEEESS
T ss_pred cCCcEEEEehhhh
Confidence 9999999999863
No 189
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.79 E-value=1.7e-05 Score=80.00 Aligned_cols=33 Identities=36% Similarity=0.804 Sum_probs=26.4
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.++.++ +..| ++|+||||||||||+++|++.+.
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 344444 4444 99999999999999999999874
No 190
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.79 E-value=1.6e-05 Score=82.68 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=67.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCCeEEEEcCCCccccC--C-CCCCCCCCcc------ccCCCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND-----YKKRVMIVDTSSEIGGN--G-DIPHPGIGNA------RRMQVPN 254 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~GkrV~~Vdq~~eIa~~--~-~ip~~~Lg~~------rrl~vLS 254 (660)
+..|+++.|.||||+|||||+..++...... .+.++.|++....+... . .....++... ...+..+
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 7889999999999999999999998754221 14678898876432100 0 0000111110 0012233
Q ss_pred HHHH-HHHHHHHHHc---cCCcEEEEeCCCCCccH--------HH----HHH----H----HhcCCEEEEEEcChh
Q 038101 255 SEMQ-HKVLIEAVEN---HMPQVIVIDEIGTKLEA--------MA----AST----I----AQRGIQLVATAHGVT 306 (660)
Q Consensus 255 gG~q-qrv~IA~aL~---~~P~VLILDEPgsgLD~--------~a----~~~----i----~~~GvtVI~TtH~~~ 306 (660)
..++ +.+..+..++ .+|++||+|+++.-... .. ... + .+.|++||++.|-..
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 3322 2333333333 68999999999864322 11 111 1 457999999998654
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.77 E-value=9e-05 Score=77.92 Aligned_cols=119 Identities=13% Similarity=0.130 Sum_probs=67.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc--ccC---CCCeEEEEcCCCccccC--C-CCCCCCCCcc---ccC---CCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL--AND---YKKRVMIVDTSSEIGGN--G-DIPHPGIGNA---RRM---QVPN 254 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL--~p~---~GkrV~~Vdq~~eIa~~--~-~ip~~~Lg~~---rrl---~vLS 254 (660)
+..|+++.|.||||+|||||+..++... ... .+.++.|++....+... . .....++... .++ ...+
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCC
Confidence 7889999999999999999999998752 221 35688999876532100 0 0000111100 001 1222
Q ss_pred HHHH-HHHHHHHHH--c--cCCcEEEEeCCCCCccHH-------H-----HHH--------HHhcCCEEEEEEcChhH
Q 038101 255 SEMQ-HKVLIEAVE--N--HMPQVIVIDEIGTKLEAM-------A-----AST--------IAQRGIQLVATAHGVTI 307 (660)
Q Consensus 255 gG~q-qrv~IA~aL--~--~~P~VLILDEPgsgLD~~-------a-----~~~--------i~~~GvtVI~TtH~~~l 307 (660)
..+. +.+..+..+ . .++++||+|+++.-.... + ... +.+.|++||++.|-...
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceec
Confidence 2222 222222222 2 689999999999754321 1 111 14679999999997653
No 192
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.77 E-value=3e-05 Score=72.63 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=26.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND 219 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~ 219 (660)
+.+| +++|+||||||||||+++|.+++.+.
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5566 99999999999999999999988654
No 193
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.77 E-value=1.3e-05 Score=75.92 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.|++++|+||||||||||++.|++.+.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 5889999999999999999999998753
No 194
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=4.4e-05 Score=83.56 Aligned_cols=73 Identities=22% Similarity=0.386 Sum_probs=51.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+.....++|.||||||||+|.++||+.+ +..+..+..+..+. ..+-.+...-|..+..|..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~s~l~~---------------~~vGese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAAPQLVQ---------------MYIGEGAKLVRDAFALAKE 272 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEGGGGCS---------------SCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEehhhhhh---------------cccchHHHHHHHHHHHHHh
Confidence 3445789999999999999999999875 44565555433220 0111223445667778888
Q ss_pred cCCcEEEEeCCC
Q 038101 269 HMPQVIVIDEIG 280 (660)
Q Consensus 269 ~~P~VLILDEPg 280 (660)
+.|.||++||+-
T Consensus 273 ~aP~IifiDEiD 284 (434)
T 4b4t_M 273 KAPTIIFIDELD 284 (434)
T ss_dssp HCSEEEEEECTH
T ss_pred cCCeEEeecchh
Confidence 999999999983
No 195
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.72 E-value=6.3e-05 Score=77.70 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
....++|.||||+|||||++.|+..+ +..+..+........ .. -.....-+-.+..+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~-------------~~--g~~~~~~~~~f~~a~~~~ 110 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVSK-------------WM--GESEKLVKQLFAMARENK 110 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEHHHHHTT-------------TG--GGHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEchHHHhhc-------------cc--chHHHHHHHHHHHHHhcC
Confidence 35689999999999999999999875 345555543221100 00 012233445566777789
Q ss_pred CcEEEEeCCCC
Q 038101 271 PQVIVIDEIGT 281 (660)
Q Consensus 271 P~VLILDEPgs 281 (660)
|.||++||+..
T Consensus 111 ~~vl~iDEid~ 121 (322)
T 3eie_A 111 PSIIFIDQVDA 121 (322)
T ss_dssp SEEEEEECGGG
T ss_pred CeEEEechhhh
Confidence 99999999964
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.71 E-value=3.5e-05 Score=73.33 Aligned_cols=36 Identities=36% Similarity=0.458 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
..++|.||+|+|||||++.|+..+... +..+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEh
Confidence 789999999999999999999887643 556666654
No 197
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.69 E-value=0.00016 Score=72.94 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.+..++|.||||+|||||++.|+..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999987743
No 198
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.69 E-value=1.7e-05 Score=76.11 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+|++++|+||||||||||++.|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999987
No 199
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.69 E-value=5.6e-05 Score=76.30 Aligned_cols=36 Identities=36% Similarity=0.694 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
..++|.||||+||||+++.|++.+....+ .+.+++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~-~~~~~~~ 83 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEE-AMIRIDM 83 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGG-GEEEEEG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCc-ceEEeec
Confidence 68999999999999999999998865433 4555553
No 200
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.66 E-value=9.9e-05 Score=77.77 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=47.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.....++|.||||+|||||++.|+..+ +..+..++....+.. .... + ....+..+..+...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~~~~l~~~-------------~~g~-~-~~~~~~~f~~a~~~ 142 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSSSDLVSK-------------WMGE-S-EKLVKQLFAMAREN 142 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEEHHHHHSC-------------C----C-HHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEeeHHHHhhh-------------hcch-H-HHHHHHHHHHHHHc
Confidence 344678999999999999999999876 344555543221100 0111 1 23334455666778
Q ss_pred CCcEEEEeCCCC
Q 038101 270 MPQVIVIDEIGT 281 (660)
Q Consensus 270 ~P~VLILDEPgs 281 (660)
.|.||+|||+..
T Consensus 143 ~~~vl~iDEid~ 154 (355)
T 2qp9_X 143 KPSIIFIDQVDA 154 (355)
T ss_dssp SSEEEEEECGGG
T ss_pred CCeEEEEechHh
Confidence 999999999974
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.66 E-value=0.00022 Score=75.57 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
.+..++|.||+|+|||||++.|+..+ +..+..++....... .... + ....+..+..+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~----~~~~~~v~~~~l~~~-------------~~g~-~-~~~~~~~~~~a~~~~ 207 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES----NATFFNISAASLTSK-------------YVGE-G-EKLVRALFAVARELQ 207 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT----TCEEEEECSCCC---------------------C-HHHHHHHHHHHHHSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh----cCcEEEeeHHHhhcc-------------ccch-H-HHHHHHHHHHHHhcC
Confidence 45799999999999999999998764 445666654322110 0111 1 123344556666778
Q ss_pred CcEEEEeCCC
Q 038101 271 PQVIVIDEIG 280 (660)
Q Consensus 271 P~VLILDEPg 280 (660)
|.||+|||+.
T Consensus 208 ~~il~iDEid 217 (389)
T 3vfd_A 208 PSIIFIDQVD 217 (389)
T ss_dssp SEEEEEETGG
T ss_pred CeEEEEECch
Confidence 9999999994
No 202
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.66 E-value=8.8e-05 Score=74.21 Aligned_cols=71 Identities=21% Similarity=0.295 Sum_probs=43.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMP 271 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P 271 (660)
...++|.||+|+|||||++.|+..+ +..+..+.....+.+ .. ......+-+-.+..+....+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~~~~~~g--------~~------~~~~~~~~~~~~~~~~~~~~ 125 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICSPDKMIG--------FS------ETAKCQAMKKIFDDAYKSQL 125 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEECGGGCTT--------CC------HHHHHHHHHHHHHHHHTSSE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeCHHHhcC--------Cc------hHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999874 233444443322210 00 00011222334555566789
Q ss_pred cEEEEeCCC
Q 038101 272 QVIVIDEIG 280 (660)
Q Consensus 272 ~VLILDEPg 280 (660)
.+|++||+.
T Consensus 126 ~vl~iDEid 134 (272)
T 1d2n_A 126 SCVVVDDIE 134 (272)
T ss_dssp EEEEECCHH
T ss_pred cEEEEEChh
Confidence 999999973
No 203
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.64 E-value=6.9e-05 Score=70.65 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
..++|.||+|+|||||++.++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 38999999999999999999987653
No 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.62 E-value=3.2e-05 Score=75.05 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=26.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.+|++++|+||||||||||++.|++.+.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57899999999999999999999999865
No 205
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.61 E-value=2.3e-05 Score=74.02 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
|++++|+||||||||||++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 578999999999999999999973
No 206
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.60 E-value=1.2e-05 Score=83.41 Aligned_cols=39 Identities=18% Similarity=0.339 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
+..++|.||+|+|||+|+++|+..+....|..|.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 689999999999999999999987751246677776543
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.58 E-value=2.9e-05 Score=80.12 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk 222 (660)
+..|++++|+||||||||||||+|+|++.++.|.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 4468999999999999999999999999887663
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.58 E-value=2.7e-06 Score=88.64 Aligned_cols=25 Identities=48% Similarity=0.793 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
++++|+||||+|||||+++|++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 7899999999999999999999873
No 209
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.57 E-value=0.00016 Score=84.72 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=64.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..-..++|.||||||||||+|+||+.+ +..+..++....+.. ..-....+-|-.+..|..
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el----g~~~~~v~~~~l~sk---------------~~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSK---------------LAGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT----TCEEEEEEHHHHHSS---------------CTTHHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh----CCeEEEEEhHHhhcc---------------cchHHHHHHHHHHHHHHH
Confidence 4555789999999999999999999865 455666654322210 011123445667788888
Q ss_pred cCCcEEEEeCCCCC----------ccHHHHHHH--------HhcCCEEEEEEcChhH
Q 038101 269 HMPQVIVIDEIGTK----------LEAMAASTI--------AQRGIQLVATAHGVTI 307 (660)
Q Consensus 269 ~~P~VLILDEPgsg----------LD~~a~~~i--------~~~GvtVI~TtH~~~l 307 (660)
+.|.||++||+-+= .+.....++ .+.++.||++|...+.
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTT
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhh
Confidence 99999999998431 111122222 2356888888876554
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.56 E-value=0.00019 Score=78.01 Aligned_cols=73 Identities=25% Similarity=0.460 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
....++|.||||+|||||++.|+..+. +..+..++....+.. .++. .. ..-+-.+..+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~---~~~~~~v~~~~l~~~-------~~g~------~~--~~~~~~f~~a~~~~ 227 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEAN---NSTFFSISSSDLVSK-------WLGE------SE--KLVKNLFQLARENK 227 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCC---SSEEEEECCC----------------------CC--CTHHHHHHHHHHSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC---CCCEEEEeHHHHHhh-------hcch------HH--HHHHHHHHHHHHcC
Confidence 457899999999999999999998762 345555544322110 0010 00 11233445566679
Q ss_pred CcEEEEeCCCC
Q 038101 271 PQVIVIDEIGT 281 (660)
Q Consensus 271 P~VLILDEPgs 281 (660)
|.||+|||+..
T Consensus 228 ~~vl~iDEid~ 238 (444)
T 2zan_A 228 PSIIFIDEIDS 238 (444)
T ss_dssp SEEEEESCTTT
T ss_pred CeEEEEechHh
Confidence 99999999974
No 211
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.56 E-value=4.9e-05 Score=84.85 Aligned_cols=28 Identities=46% Similarity=0.865 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
+|.+++|+||||||||||+|+|++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 6899999999999999999999999853
No 212
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=3.7e-05 Score=71.09 Aligned_cols=27 Identities=37% Similarity=0.727 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.|.+++|+|||||||||+++.|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999874
No 213
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.54 E-value=3.7e-05 Score=76.12 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH---hccccC
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIA---RVLAND 219 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~Ia---glL~p~ 219 (660)
..+++++|+||||||||||++.|+ |+..++
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 357899999999999999999999 776554
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.53 E-value=0.00022 Score=76.24 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=64.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc--ccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA--RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~--rrl~vLSgG~qqrv~IA~a 266 (660)
+..|.++.|.||||+|||||+..++..... .|..|.|++....+.... ....++... .-.+..+.. +. +.++..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s~~~~~-a~~~g~d~~~l~i~~~~~~e-~~-l~~l~~ 146 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDPVY-ARALGVNTDELLVSQPDNGE-QA-LEIMEL 146 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHH-HH-HHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCChhHHH-HHHcCCCHHHceeecCCcHH-HH-HHHHHH
Confidence 567899999999999999999888765543 356799998764321100 000111110 001122322 22 222222
Q ss_pred H--ccCCcEEEEeCCCCCc-----c---------HHH------HHHH----HhcCCEEEEEEcChh
Q 038101 267 E--NHMPQVIVIDEIGTKL-----E---------AMA------ASTI----AQRGIQLVATAHGVT 306 (660)
Q Consensus 267 L--~~~P~VLILDEPgsgL-----D---------~~a------~~~i----~~~GvtVI~TtH~~~ 306 (660)
+ ...+++||+|.++.-. + ..+ .+.+ .+.|++||++.|-..
T Consensus 147 l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~ 212 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVRE 212 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--
T ss_pred HHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence 2 3679999999998532 1 111 1112 467999999998654
No 215
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.51 E-value=4.3e-05 Score=71.10 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+|++++|+|+|||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999999876
No 216
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00014 Score=74.29 Aligned_cols=29 Identities=38% Similarity=0.769 Sum_probs=25.0
Q ss_pred ccCC--cEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDG--ASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~G--e~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+..| ..++|.||||+||||+++.|++.+.
T Consensus 53 l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 53 LKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5555 5599999999999999999999874
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.48 E-value=0.0002 Score=79.25 Aligned_cols=71 Identities=28% Similarity=0.470 Sum_probs=47.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.....++|.||||+|||||++.|+..+ +..+..++....... ... .....-+..+..+...
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----~~~fv~vn~~~l~~~-------------~~g--~~~~~~~~~f~~A~~~ 296 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSK-------------LAG--ESESNLRKAFEEAEKN 296 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----SSEEEEEEHHHHHTS-------------CTT--HHHHHHHHHHHHHHHT
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----CCCEEEEEchHhhhh-------------hcc--hhHHHHHHHHHHHHhc
Confidence 455789999999999999999998765 345655553221100 000 0112334556777778
Q ss_pred CCcEEEEeCC
Q 038101 270 MPQVIVIDEI 279 (660)
Q Consensus 270 ~P~VLILDEP 279 (660)
.|.+|+|||+
T Consensus 297 ~p~iLfLDEI 306 (489)
T 3hu3_A 297 APAIIFIDEL 306 (489)
T ss_dssp CSEEEEEESH
T ss_pred CCcEEEecch
Confidence 8999999998
No 218
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.48 E-value=0.0002 Score=74.29 Aligned_cols=111 Identities=15% Similarity=0.113 Sum_probs=72.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---c-----ccCCCCCCCCCCccccCCC--CCHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE---I-----GGNGDIPHPGIGNARRMQV--PNSEMQ 258 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e---I-----a~~~~ip~~~Lg~~rrl~v--LSgG~q 258 (660)
+.+|+.++|.|+||+|||||+..++..... .|..|.|+..... + ....+++...+ +-.. ++.++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l----~~~~~~l~~~~~ 139 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARRDFASEDW 139 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHH----HSCHHHHCSSCH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcCCCCCCHHHH
Confidence 788999999999999999999999865543 2467888864321 0 00011110000 1112 677778
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCccHHH--HHHH-HhcCCE--EEEEEcC
Q 038101 259 HKVLIEAVENHMPQVIVIDEIGTKLEAMA--ASTI-AQRGIQ--LVATAHG 304 (660)
Q Consensus 259 qrv~IA~aL~~~P~VLILDEPgsgLD~~a--~~~i-~~~Gvt--VI~TtH~ 304 (660)
+++..|...+.++.+++.|+|+..++... ++.+ .+.|.. +|++-|-
T Consensus 140 ~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 140 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 88888888888889999999976544432 2223 345777 7777653
No 219
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.48 E-value=0.00023 Score=65.09 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=53.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
...+..++|.||+|+|||++.+.|+...... +..+. ++..... . . ......+..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v-~~~~~~~-------~-------~-------~~~~~~~~~a-- 75 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV-YRELTPD-------N-------A-------PQLNDFIALA-- 75 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE-EEECCTT-------T-------S-------SCHHHHHHHH--
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE-EECCCCC-------c-------c-------hhhhcHHHHc--
Confidence 4567899999999999999999998765432 33333 4432211 0 0 0111222222
Q ss_pred cCCcEEEEeCCCCCccHHHHHHHH------hcCCEEEEEEcC
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTIA------QRGIQLVATAHG 304 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i~------~~GvtVI~TtH~ 304 (660)
+..+|++||+.. ++......+. ...+.+|++|..
T Consensus 76 -~~g~l~ldei~~-l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 -QGGTLVLSHPEH-LTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp -TTSCEEEECGGG-SCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred -CCcEEEEcChHH-CCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 568999999974 4555544441 234667777754
No 220
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.47 E-value=0.00017 Score=76.50 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=65.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHH-HhccccCCCCeEEEEcCCCccccCCCCCCCCCCcc--ccCCCCCHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREI-ARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNA--RRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~I-aglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~--rrl~vLSgG~qqrv~IA~ 265 (660)
+..| ++.|.||||+|||||+-.+ +.......|.++.|++....+... .....++... ...+..+. +++.+.++.
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-ra~~lGvd~d~llv~~~~~~-E~~~l~i~~ 102 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-YLRSMGVDPERVIHTPVQSL-EQLRIDMVN 102 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-HHHHTTCCGGGEEEEECSBH-HHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-HHHHhCCCHHHeEEEcCCCH-HHHHHHHHH
Confidence 6678 8999999999999995554 444432235689999876543210 0001122111 01122233 343233333
Q ss_pred HH----ccCCcEEEEeCCCCCc----------c------HHH------HHH----HHhcCCEEEEEEcChh
Q 038101 266 VE----NHMPQVIVIDEIGTKL----------E------AMA------AST----IAQRGIQLVATAHGVT 306 (660)
Q Consensus 266 aL----~~~P~VLILDEPgsgL----------D------~~a------~~~----i~~~GvtVI~TtH~~~ 306 (660)
.+ ...|++||+|=+++-. | .++ .+. +.+.|+++|+|-|-..
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee
Confidence 33 4679999999998642 1 011 011 2568999999999865
No 221
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.46 E-value=7.9e-05 Score=76.38 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHH--HHHHHHHHH---
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEM--QHKVLIEAV--- 266 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~--qqrv~IA~a--- 266 (660)
...++|.||||+|||+|.+.|+..+ +..+..++...... .+.+.. .-+-.+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~~~l~~-----------------~~~g~~~~~i~~~f~~a~~~ 94 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSAGELES-----------------GNAGEPAKLIRQRYREAAEI 94 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEHHHHHC-----------------C---HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeHHHhhh-----------------ccCchhHHHHHHHHHHHHHH
Confidence 3578889999999999999999877 34455554322110 111111 111223333
Q ss_pred -HccCCcEEEEeCCCC
Q 038101 267 -ENHMPQVIVIDEIGT 281 (660)
Q Consensus 267 -L~~~P~VLILDEPgs 281 (660)
....|.||+|||+-.
T Consensus 95 ~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 95 IRKGNMCCLFINDLDA 110 (293)
T ss_dssp HTTSSCCCEEEECCC-
T ss_pred HhcCCCeEEEEechhh
Confidence 366899999999954
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.45 E-value=4e-05 Score=76.82 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=25.1
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 185 LQDLVQDGASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 185 L~dlI~~Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
+..+..+|.+++|+|||||||||+++.|+..
T Consensus 20 ~~~m~~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 20 RPHMTAIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp ---CTTTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444577899999999999999999999943
No 223
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.45 E-value=4.9e-05 Score=81.86 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND 219 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~ 219 (660)
+..|++++|+|||||||||||++|++++.+.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 5668999999999999999999999998654
No 224
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.44 E-value=5.6e-05 Score=84.98 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=36.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS 231 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~ 231 (660)
+.+|++++|+|+||||||||+++|++.+.+..|..+.+++...
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 6789999999999999999999999999887665676676543
No 225
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.43 E-value=5.4e-05 Score=77.83 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=30.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccC-----CCCeEEEEcC
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLAND-----YKKRVMIVDT 229 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~-----~GkrV~~Vdq 229 (660)
..+.+++|.||+|+|||||++.++..+... .+..+.+++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 345789999999999999999999877432 1345566654
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=7.3e-05 Score=71.63 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=24.8
Q ss_pred ccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 184 LLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 184 iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++++ +.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555 6788999999999999999999999876
No 227
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.40 E-value=0.00048 Score=74.67 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=72.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---c-----ccCCCCCCCCCCccccCCCCCHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE---I-----GGNGDIPHPGIGNARRMQVPNSEMQHK 260 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e---I-----a~~~~ip~~~Lg~~rrl~vLSgG~qqr 260 (660)
+.+|+.++|.|+||+|||||+..++.......|..|.|+..... + ....+++...+ +-..++..+.++
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l----~~g~l~~~~~~~ 272 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRV----RLGQLTDRDFSR 272 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTC----CGGGCCHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hCCCCCHHHHHH
Confidence 78899999999999999999999998766444677888765421 0 11122222222 123577788788
Q ss_pred HHHHHHHccCCcEEEEeCCCCCccHHH--HHHH-HhcCCEEEEEEc
Q 038101 261 VLIEAVENHMPQVIVIDEIGTKLEAMA--ASTI-AQRGIQLVATAH 303 (660)
Q Consensus 261 v~IA~aL~~~P~VLILDEPgsgLD~~a--~~~i-~~~GvtVI~TtH 303 (660)
+.-+........+.+.|+|+..++... ++.+ .+.|..+|++=+
T Consensus 273 ~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 273 LVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 777766666777888888765443321 1222 356777777753
No 228
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=9.1e-05 Score=71.31 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=32.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
...|.+++|+|+||||||||++.|++.+.+..+ .|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~-~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI-SVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC-eEEEec
Confidence 467899999999999999999999999876544 455554
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.40 E-value=2e-05 Score=78.32 Aligned_cols=25 Identities=36% Similarity=0.731 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
...++|.||||+|||||++.|+..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458899999999999999999865
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.39 E-value=0.00013 Score=81.06 Aligned_cols=24 Identities=46% Similarity=0.869 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.++|+||||+|||||+++|++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999999863
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=3.1e-05 Score=81.04 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=24.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK 221 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G 221 (660)
+.+|++++|+||||||||||++.|+|.+.+..|
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccc
Confidence 557999999999999999999999999877655
No 232
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.38 E-value=7.5e-05 Score=68.42 Aligned_cols=27 Identities=33% Similarity=0.650 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
+..++|.||+|+|||||++.++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999987643
No 233
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.37 E-value=0.00071 Score=63.11 Aligned_cols=25 Identities=52% Similarity=0.793 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..++|.||+|+|||||++.++..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 3599999999999999999998753
No 234
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.36 E-value=0.00073 Score=65.87 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=66.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC--CccccCCCCCCCCCCcc-ccCCCCCHHHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS--SEIGGNGDIPHPGIGNA-RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~--~eIa~~~~ip~~~Lg~~-rrl~vLSgG~qqrv~IA~a 266 (660)
..|.++.+.||.|+||||++-.++.-+. ..|++|.++.-. ...+...-..+.++... ..+.... .+...
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~-------~i~~~ 77 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSR-------EILKY 77 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC-------CEEECTTSCEEECEEESSST-------HHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHH-------HHHHH
Confidence 4578999999999999998877776554 346777776311 11110001122222110 0111111 11111
Q ss_pred HccCCcEEEEeCCCCCccHH---HHHHHHhcCCEEEEEEcCh----------hHHHHhcCcEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLEAM---AASTIAQRGIQLVATAHGV----------TIENLIMNPSLEM 318 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~---a~~~i~~~GvtVI~TtH~~----------~l~~~i~dril~l 318 (660)
+..+.++|++||.-. +|+. ..+.+.+.|+.||++.++. .....++|.+..+
T Consensus 78 ~~~~~dvViIDEaqf-l~~~~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el 141 (191)
T 1xx6_A 78 FEEDTEVIAIDEVQF-FDDEIVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKI 141 (191)
T ss_dssp CCTTCSEEEECSGGG-SCTHHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HhccCCEEEEECCCC-CCHHHHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEee
Confidence 112579999999754 3333 3444567799999998854 3344567776443
No 235
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.36 E-value=9.7e-05 Score=72.70 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=25.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
..+|++++|.|++|||||||++.|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 567999999999999999999999997
No 236
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.36 E-value=0.00012 Score=70.24 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=32.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE 232 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e 232 (660)
+..|.+++|+|++||||||+++.|++.+. .+.++++...
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----~~~~i~~D~~ 56 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLP-----NCSVISQDDF 56 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTST-----TEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcC-----CcEEEeCCcc
Confidence 67789999999999999999999998763 3667776544
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.35 E-value=0.00011 Score=75.99 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=28.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKK 222 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~Gk 222 (660)
+..|++++|+||||||||||+++|+ ++.+..|.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 3468999999999999999999999 88876553
No 238
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.34 E-value=0.00058 Score=74.95 Aligned_cols=94 Identities=22% Similarity=0.247 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc----------CCCCCCCCCCccccCCCCCHHHHHHH
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG----------NGDIPHPGIGNARRMQVPNSEMQHKV 261 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~----------~~~ip~~~Lg~~rrl~vLSgG~qqrv 261 (660)
+.+++++|++|+||||++..|+..+.. .|++|.+++....-.+ ..++|-... ....++..--+-
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~-----~~~~dp~~i~~~ 173 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGN-----PQEKDAIKLAKE 173 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECC-----TTCCCHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEec-----CCCCCHHHHHHH
Confidence 579999999999999999999998875 4788988876432110 011111100 011233333344
Q ss_pred HHHHHHccCCcEEEEeCCCC-CccHHHHHHH
Q 038101 262 LIEAVENHMPQVIVIDEIGT-KLEAMAASTI 291 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgs-gLD~~a~~~i 291 (660)
++..+....+|++|+|.|+. ..|.....++
T Consensus 174 al~~a~~~~~DvVIIDTaGrl~~d~~lm~el 204 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRHKEDKALIEEM 204 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCCHHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCcccchHHHHHHH
Confidence 56677777899999999985 4555544444
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.31 E-value=0.0003 Score=74.56 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=28.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
+.+|..++|.||||+|||||+..++.. .|.++.|++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATV 156 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 555778899999999999999999865 2344555554
No 240
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.29 E-value=0.00014 Score=69.89 Aligned_cols=107 Identities=20% Similarity=0.285 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC-C-ccccCCCCCCCCCCcc-ccCCCCCHHHHHHHHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS-S-EIGGNGDIPHPGIGNA-RRMQVPNSEMQHKVLIEAVE 267 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~-~-eIa~~~~ip~~~Lg~~-rrl~vLSgG~qqrv~IA~aL 267 (660)
+|.+++|.||+|+||||++..++..+.. .|+++.++... . ..+...-..+.++... .....+.. .+. .+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~------~~~-~~ 73 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEE------MRK-YI 73 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC-----CCCEECC----CEECEEESSGGG------GGG-GC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHH------HHH-Hh
Confidence 3789999999999999998544433322 35666665211 0 1100000111111100 00111000 000 01
Q ss_pred ccCCcEEEEeCCCCCccHHHH---HHHHhcCCEEEEEEcChh
Q 038101 268 NHMPQVIVIDEIGTKLEAMAA---STIAQRGIQLVATAHGVT 306 (660)
Q Consensus 268 ~~~P~VLILDEPgsgLD~~a~---~~i~~~GvtVI~TtH~~~ 306 (660)
..++++|++||.-. +++... ..+.+.|+.||++.++.+
T Consensus 74 ~~~~dvviIDE~Q~-~~~~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 74 EEDTRGVFIDEVQF-FNPSLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp CTTEEEEEECCGGG-SCTTHHHHHHHHHHTTCEEEEEEESBC
T ss_pred cCCCCEEEEECccc-CCHHHHHHHHHHHHCCCCEEEEeeccc
Confidence 13679999999864 333332 234567999999888554
No 241
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.28 E-value=8.2e-05 Score=71.28 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV 227 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~V 227 (660)
+.++|+|++|||||||++.|+|++.+. |.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~-g~~~G~I 36 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER-GLRVAVV 36 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc-CCceEEE
Confidence 578999999999999999999999875 3344544
No 242
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.28 E-value=0.00016 Score=67.77 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
+|.+++|+|++||||||+++.|++.+.+ .|..+..++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 5889999999999999999999998865 354454444
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.00018 Score=74.15 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=34.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhc--ccc---------CCC----CeEEEEcCCCc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARV--LAN---------DYK----KRVMIVDTSSE 232 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~Iagl--L~p---------~~G----krV~~Vdq~~e 232 (660)
+..|+++.|.||||+|||||+..++.. +.. ..| .+|.|++....
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 778999999999999999999998853 221 223 58899987653
No 244
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.21 E-value=0.0002 Score=75.45 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccC-CCCeEEEEcCC
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLAND-YKKRVMIVDTS 230 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~-~GkrV~~Vdq~ 230 (660)
+++|+||||||||||+++|++++... .+..++++...
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 89999999999999999999998732 13357776654
No 245
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.0005 Score=67.56 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=53.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCC----CeEEEEcCCCccc--------cCCCCC-CCCCC----------
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYK----KRVMIVDTSSEIG--------GNGDIP-HPGIG---------- 245 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~G----krV~~Vdq~~eIa--------~~~~ip-~~~Lg---------- 245 (660)
+..|+.+++.||+||||||++..++.......+ .++.++....+.+ ...+.. ...++
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP 152 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccC
Confidence 567899999999999999988877533211112 2455543332211 000000 00000
Q ss_pred -ccccCCCCCHHHHHHHHHHHHHccCCcEEEEeCCCC-CccHHHH
Q 038101 246 -NARRMQVPNSEMQHKVLIEAVENHMPQVIVIDEIGT-KLEAMAA 288 (660)
Q Consensus 246 -~~rrl~vLSgG~qqrv~IA~aL~~~P~VLILDEPgs-gLD~~a~ 288 (660)
....+-+..+|.-.+.+. ....+.++||+||.-. ++|....
T Consensus 153 ~~~~~Ivv~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 153 RPHASIMFCTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp CSSSEEEEEEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHH
T ss_pred CCCCeEEEECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHH
Confidence 001122345665544432 2468899999999976 5766543
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.0011 Score=63.99 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=30.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
+..|+++.|.|+||+|||||+..++-......+..+.|+...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 778999999999999999998876532211235567777543
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=0.0002 Score=70.49 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..+|+.++|+||+|||||||++.|++.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34689999999999999999999998864
No 248
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.17 E-value=0.0033 Score=57.49 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|+||+|||||++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 249
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.16 E-value=0.00018 Score=69.54 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=34.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
+..|.+++|+|++||||||+++.|++.+.+..|..+.+++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 6789999999999999999999999998755565566665
No 250
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.15 E-value=0.00099 Score=72.80 Aligned_cols=32 Identities=41% Similarity=0.717 Sum_probs=25.7
Q ss_pred cccccCCc--EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 186 QDLVQDGA--SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 186 ~dlI~~Ge--~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
...+..|. +++|.||||+|||||++.|+..+.
T Consensus 42 ~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 42 PRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 33355554 699999999999999999998863
No 251
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.14 E-value=0.00027 Score=75.43 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+| +++|+|||||||||||.+|.++.
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 6777 99999999999999999999864
No 252
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.12 E-value=0.0014 Score=75.09 Aligned_cols=114 Identities=10% Similarity=0.073 Sum_probs=65.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcccc--CCCCeEEEEcCCCccc---------cCCCCCC-CCCCc-cccCCCC-C
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAN--DYKKRVMIVDTSSEIG---------GNGDIPH-PGIGN-ARRMQVP-N 254 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p--~~GkrV~~Vdq~~eIa---------~~~~ip~-~~Lg~-~rrl~vL-S 254 (660)
+..+.+++|+|++|+|||||++.|++.... ..|. | .....+. +.....+ ..+.. ...+... .
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~-V---~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGR-V---EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCC-G---GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccce-e---cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 466789999999999999999999976543 1121 1 1100000 0000000 00000 0000000 0
Q ss_pred HHH--HHHHHHHHHHccCCcEEEEeCCCCCccHHHHHHH---HhcCCEEEEEEcChhH
Q 038101 255 SEM--QHKVLIEAVENHMPQVIVIDEIGTKLEAMAASTI---AQRGIQLVATAHGVTI 307 (660)
Q Consensus 255 gG~--qqrv~IA~aL~~~P~VLILDEPgsgLD~~a~~~i---~~~GvtVI~TtH~~~l 307 (660)
+|+ -.......+...+.-++++| ++.+++......+ ...|+.+|++.|.++.
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHHccCCEEEEecCCch
Confidence 111 01234455566789999999 9999998776544 4678999999998774
No 253
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.11 E-value=0.0002 Score=76.91 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.0
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+++++ +..|++++|+||||||||||++.|++.+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455665 8899999999999999999999999975
No 254
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.11 E-value=0.00081 Score=85.20 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=55.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC----CCCCCCCCCccccCCCCCHHHH-HHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN----GDIPHPGIGNARRMQVPNSEMQ-HKVLI 263 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~----~~ip~~~Lg~~rrl~vLSgG~q-qrv~I 263 (660)
+.+|.+++|.||||+|||||...++.... ..|.++.|++....+... .+++ +... .+.....+++ .+..-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~~~~~l~a~~~G~d---l~~l-~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEHALDPIYARKLGVD---IDNL-LCSQPDTGEQALEICD 1498 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTSCCCHHHHHHTTCC---TTTC-EEECCSSHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEcccccCHHHHHHcCCC---chhc-eeecCChHHHHHHHHH
Confidence 77899999999999999999999975443 357789999876543211 1111 1111 1222223333 23333
Q ss_pred HHHHccCCcEEEEeCCC
Q 038101 264 EAVENHMPQVIVIDEIG 280 (660)
Q Consensus 264 A~aL~~~P~VLILDEPg 280 (660)
..+....|++||+||+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 34556899999999995
No 255
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.08 E-value=0.0032 Score=61.61 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.++|+|++|+|||||++.|.|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 6799999999999999999987654
No 256
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.08 E-value=0.00026 Score=68.21 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+++|+||+||||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.08 E-value=0.00034 Score=65.82 Aligned_cols=39 Identities=36% Similarity=0.640 Sum_probs=32.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
...|.+++|+|++||||||+++.|+..+... |..+.+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~ 48 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLD 48 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEee
Confidence 4568899999999999999999999988754 44566665
No 258
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.07 E-value=0.00042 Score=63.25 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=24.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
...+..++|.||+|+|||++++.|+...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4567889999999999999999998654
No 259
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.04 E-value=0.0001 Score=86.02 Aligned_cols=73 Identities=22% Similarity=0.426 Sum_probs=46.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN 268 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~ 268 (660)
+..+..++|+||||||||||+++|++.+.. .+..++.. ++ .. ..+.... ..-+..+..+..
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~----~~i~v~~~-~l------~~------~~~g~~~--~~i~~~f~~a~~ 568 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKGP-EL------LT------MWFGESE--ANVREIFDKARQ 568 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTC----CCCCCCCS-SS------TT------CCTTTSS--HHHHHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCC----CEEEEech-Hh------hh------hhcCccH--HHHHHHHHHHHh
Confidence 457889999999999999999999998732 22222211 11 00 1112222 223344556666
Q ss_pred cCCcEEEEeCCC
Q 038101 269 HMPQVIVIDEIG 280 (660)
Q Consensus 269 ~~P~VLILDEPg 280 (660)
..|.||++||+.
T Consensus 569 ~~p~vl~iDEid 580 (806)
T 1ypw_A 569 AAPCVLFFDELD 580 (806)
T ss_dssp HCSBCCCCSSHH
T ss_pred cCCeEEEEEChh
Confidence 789999999974
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.03 E-value=0.0012 Score=68.32 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC-CCC----CCCCCCccccCCCCCHHHHHHHHHHHH
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN-GDI----PHPGIGNARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~-~~i----p~~~Lg~~rrl~vLSgG~qqrv~IA~a 266 (660)
+.+++++|+||+||||++..|++.+... |.+|.+++....-... ..+ ...++.-.......++..-.+-.+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~ 176 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF 176 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999865 6688888765321100 000 000010000001123332222344444
Q ss_pred HccCCcEEEEeCCCCC
Q 038101 267 ENHMPQVIVIDEIGTK 282 (660)
Q Consensus 267 L~~~P~VLILDEPgsg 282 (660)
...+.+++|+|=|+..
T Consensus 177 ~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 177 LSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHTTCSEEEEECCCSC
T ss_pred HhCCCCEEEEeCCCCc
Confidence 4478899999999864
No 261
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.02 E-value=0.0022 Score=67.26 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.|+|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999994
No 262
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.01 E-value=0.00028 Score=73.32 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
++++|+|+|||||||||+.|+|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 588999999999999999999986
No 263
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.01 E-value=0.0019 Score=80.82 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=66.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccc----cCCCCCCCCCCccccCCCCCHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIG----GNGDIPHPGIGNARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa----~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA 264 (660)
+.+|++++|.||||+|||||+..++..... .|.+|.|++...... ...++....+ .-.+..+..+....+-.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~Ees~~ql~A~~lGvd~~~L---~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIYARKLGVDIDNL---LCSQPDTGEQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHHHHHHTTCCGGGC---EEECCSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH-cCCCeEEEeccchHHHHHHHHcCCChhhe---EEecCCcHHHHHHHHHH
Confidence 678999999999999999999999887764 355788887654321 0011111011 00112233221111111
Q ss_pred HHHccCCcEEEEeCCCCCcc--------------HHHH------HH----HHhcCCEEEEEEc
Q 038101 265 AVENHMPQVIVIDEIGTKLE--------------AMAA------ST----IAQRGIQLVATAH 303 (660)
Q Consensus 265 ~aL~~~P~VLILDEPgsgLD--------------~~a~------~~----i~~~GvtVI~TtH 303 (660)
.+..+.|++||+|++..-.. .+.+ .. +.+.|++||++.|
T Consensus 805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinq 867 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 22347899999999986431 1111 11 2578999999998
No 264
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.00 E-value=0.00053 Score=74.48 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=46.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHH---H
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAV---E 267 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~a---L 267 (660)
.+..++|.||||+|||||.+.|+..+... ..+..++...... .......+-+-.+..+ .
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~--~~~~~~~~~~~~~----------------~~~~~~~~~~~~f~~a~~~~ 123 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSK--VPFCPMVGSEVYS----------------TEIKKTEVLMENFRRAIGLR 123 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTT--SCEEEEEGGGGCC----------------SSSCHHHHHHHHHHHTEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCC--ceEEEEeHHHHHH----------------HhhhhhHHHHHHHHHHHhhh
Confidence 44689999999999999999999987432 3344444322210 0111122233344555 5
Q ss_pred ccCCcEEEEeCCCC
Q 038101 268 NHMPQVIVIDEIGT 281 (660)
Q Consensus 268 ~~~P~VLILDEPgs 281 (660)
...|.+|++||+.+
T Consensus 124 ~~~~~il~iDEid~ 137 (456)
T 2c9o_A 124 IKETKEVYEGEVTE 137 (456)
T ss_dssp EEEEEEEEEEEEEE
T ss_pred hcCCcEEEEechhh
Confidence 67899999999953
No 265
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.99 E-value=0.0026 Score=69.79 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=34.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
+..|+.++|.|+||+|||||+..++.......|.+|.|++..
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 778999999999999999999998876654336678888654
No 266
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.001 Score=68.74 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccC------C-CCeEEEEc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLAND------Y-KKRVMIVD 228 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~------~-GkrV~~Vd 228 (660)
+.+++|.||+|+|||||++.++..+... . +..+.+++
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4689999999999999999999876321 2 45666665
No 267
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.99 E-value=0.0025 Score=65.26 Aligned_cols=24 Identities=42% Similarity=0.736 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..++|.||+|+|||||++.|+..+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 578999999999999999998775
No 268
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=96.99 E-value=0.00039 Score=70.02 Aligned_cols=57 Identities=21% Similarity=0.114 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCCCceeecCCCChhHHHHHHHHHHHc-CcceeeccCCCCceEEEcCCC
Q 038101 558 EARVAIEQVVIPKGESVELLPRPSYILSIQIDLIRKY-QLHYQRVGKEPDARLRILPFQ 615 (660)
Q Consensus 558 e~~~ai~~~v~~~~~~vel~pr~~~i~~~q~~l~~~y-~l~~~~~g~~~~~r~~i~p~~ 615 (660)
-|+.|+++| .-.|+||.|-|-+++=||+-|..+..+ .+.++|-|+||+|||.|+|..
T Consensus 153 lA~~~A~kV-~~tg~~v~L~PM~~~ERriIH~al~~~~~V~T~SeGeep~R~VVI~~~~ 210 (225)
T 3gku_A 153 LAKNIAYKV-KRTKRSVSLEPMNPYERRIIHAALQNDKYVVTRSDGEEPFRHVIISLKR 210 (225)
T ss_dssp HHHHHHHHH-HHHCSCEECCCCCHHHHHHHHHHTTTCSSEEEEEESSTTSCEEEEEECC
T ss_pred HHHHHHHHH-HHhCCEEEccCCCHHHHHHHHHHHccCCCcEEEEeecCCCeEEEEEEcC
Confidence 378888995 456999999999999999999999887 899999999999999999985
No 269
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.98 E-value=0.0022 Score=67.29 Aligned_cols=35 Identities=34% Similarity=0.632 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
....++|.||+|+||||+++.|+..+ +..+..++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l----~~~~~~~~~ 105 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL----DIPIAISDA 105 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEecc
Confidence 45689999999999999999999876 334555543
No 270
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.97 E-value=0.00039 Score=65.68 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.++|+|+||||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6799999999999999999998754
No 271
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.00023 Score=73.69 Aligned_cols=31 Identities=48% Similarity=0.844 Sum_probs=27.6
Q ss_pred ccCCcE--EEEEcCCCCcHHHHHHHHHhccccC
Q 038101 189 VQDGAS--LLFIGPPGVGKTTIIREIARVLAND 219 (660)
Q Consensus 189 I~~Ge~--ilIlGPnGsGKTTLLR~IaglL~p~ 219 (660)
++.|++ ++|.||||+||||+++++++.+.+.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 778876 9999999999999999999988643
No 272
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.95 E-value=0.00038 Score=66.86 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=26.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+..|.+++|+||||||||||++.|+..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56789999999999999999999998763
No 273
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.95 E-value=0.00064 Score=68.02 Aligned_cols=34 Identities=38% Similarity=0.688 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
+..++|.||||+||||+++.|+..+. ..+..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~----~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC----CCEEEEcc
Confidence 56899999999999999999998872 34555543
No 274
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.94 E-value=0.00046 Score=72.85 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
+..++|+|+||||||||++.|++.+.+.. .+|.++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~-~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG-HKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC-CeEEEEe
Confidence 67999999999999999999999887764 4566654
No 275
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.93 E-value=0.00046 Score=72.38 Aligned_cols=46 Identities=24% Similarity=0.471 Sum_probs=37.2
Q ss_pred cccccc---ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 183 NLLQDL---VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 183 ~iL~dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
.++.++ +.+|.+++|+|+||+|||||++.|++.+.+. +.+|.+++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEee
Confidence 455554 6778999999999999999999999998765 556777654
No 276
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.91 E-value=0.00042 Score=66.13 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038101 194 SLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iag 214 (660)
+++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999998
No 277
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.90 E-value=0.002 Score=75.46 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=53.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccC------CCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHH
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLAND------YKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~------~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~ 265 (660)
..+++|+||||+|||||++.|++.+... .+..+.+++....+++.. ... ....+-+-.+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~-----------~~g--~~~~~l~~~~~~ 257 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK-----------YRG--EFEERLKAVIQE 257 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc-----------cch--HHHHHHHHHHHH
Confidence 4578999999999999999999887432 155677776543321100 000 111222233333
Q ss_pred HHc-cCCcEEEEeCCCCCc---------cHHH-HHH-HHhcCCEEEEEEcChh
Q 038101 266 VEN-HMPQVIVIDEIGTKL---------EAMA-AST-IAQRGIQLVATAHGVT 306 (660)
Q Consensus 266 aL~-~~P~VLILDEPgsgL---------D~~a-~~~-i~~~GvtVI~TtH~~~ 306 (660)
+.. ..|.||++||+..-. |... ... +...++.+|+++....
T Consensus 258 ~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 258 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDE 310 (854)
T ss_dssp HHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHH
T ss_pred HHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchH
Confidence 433 367899999996422 2111 111 2344577777775443
No 278
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.90 E-value=0.0021 Score=80.51 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=68.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCC--ccccCCCCCHHHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIG--NARRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg--~~rrl~vLSgG~qqrv~IA~a 266 (660)
+.+|.++.|.||||+|||||+..++..... .|..+.|++......... ....++. ...-.+.-+..+-....-..+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~~~~~-a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv 457 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALA 457 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchHHHH-HHHcCCCHHHeEEcCCCCHHHHHHHHHHHH
Confidence 558999999999999999999888766543 366889998754321100 0001111 101112223433333333334
Q ss_pred HccCCcEEEEeCCCCCcc--------------HHHH------HH----HHhcCCEEEEEEcC
Q 038101 267 ENHMPQVIVIDEIGTKLE--------------AMAA------ST----IAQRGIQLVATAHG 304 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD--------------~~a~------~~----i~~~GvtVI~TtH~ 304 (660)
..+.|++||+|.+..-.. ..++ +. +++.|++||++.|-
T Consensus 458 ~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 458 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 467899999999986442 1111 11 25789999999884
No 279
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.87 E-value=0.00051 Score=64.92 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.++|+|+||||||||++.|+|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 579999999999999999999753
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.86 E-value=0.00051 Score=65.31 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038101 194 SLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iag 214 (660)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 281
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.84 E-value=0.0056 Score=62.42 Aligned_cols=89 Identities=22% Similarity=0.312 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHc----
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVEN---- 268 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~---- 268 (660)
..+++.||+|+||||+++.|+..+ +..+..++.... ....-+...-..+..
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~~---------------------~~~~i~~~~~~~~~~~~~~ 103 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSDC---------------------KIDFVRGPLTNFASAASFD 103 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTTC---------------------CHHHHHTHHHHHHHBCCCS
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEccccc---------------------CHHHHHHHHHHHHhhcccC
Confidence 466777889999999999999876 345555553221 011111111111111
Q ss_pred cCCcEEEEeCCCCCccHHHHHHH---H---hcCCEEEEEEcChh
Q 038101 269 HMPQVIVIDEIGTKLEAMAASTI---A---QRGIQLVATAHGVT 306 (660)
Q Consensus 269 ~~P~VLILDEPgsgLD~~a~~~i---~---~~GvtVI~TtH~~~ 306 (660)
.++.+|++||+..--...+...+ . ..++.+|+++....
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 26899999999753213333333 1 24678888886543
No 282
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.83 E-value=0.0036 Score=71.91 Aligned_cols=103 Identities=24% Similarity=0.366 Sum_probs=57.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccC------CCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLAND------YKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~------~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~I 263 (660)
..+.+++|+||+|+||||+++.|+..+... .+..+..++....+.+. ...+ ...++-+-.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~-----------~~~g--~~e~~l~~~~ 271 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT-----------KYRG--DFEKRFKALL 271 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC-----------CCSS--CHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccc-----------cccc--hHHHHHHHHH
Confidence 356899999999999999999999876422 12334333322211100 0111 1223333344
Q ss_pred HHHHccCCcEEEEeCCCCCc--------cHHHHHHH----HhcCCEEEEEEcCh
Q 038101 264 EAVENHMPQVIVIDEIGTKL--------EAMAASTI----AQRGIQLVATAHGV 305 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgL--------D~~a~~~i----~~~GvtVI~TtH~~ 305 (660)
..+....+.+|++||+-.-. ...+...+ ...++.+|+++...
T Consensus 272 ~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 272 KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_dssp HHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred HHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCch
Confidence 44445568999999996421 22223333 23457777777543
No 283
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.81 E-value=0.0005 Score=69.21 Aligned_cols=30 Identities=57% Similarity=0.878 Sum_probs=24.6
Q ss_pred cccCCc--EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 188 LVQDGA--SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 188 lI~~Ge--~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
++..|. .++|.||+|+||||+++.++..+.
T Consensus 40 ~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 40 YVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 344443 699999999999999999998764
No 284
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.78 E-value=0.00073 Score=67.75 Aligned_cols=31 Identities=45% Similarity=0.674 Sum_probs=24.9
Q ss_pred ccccCCc--EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 187 DLVQDGA--SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 187 dlI~~Ge--~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..+..|. .++|.||+|+||||+++.++..+.
T Consensus 31 ~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 31 GYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp TTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 3354443 599999999999999999998763
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.0034 Score=69.25 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
...++|.||+|+|||||++.|+..+ +..+..++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~s 111 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNAS 111 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeCC
Confidence 3689999999999999999999876 4566666544
No 286
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.77 E-value=0.0011 Score=68.22 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
..++|.||+|+||||+++.++..+..
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36899999999999999999987754
No 287
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.75 E-value=0.0046 Score=71.01 Aligned_cols=88 Identities=27% Similarity=0.344 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..++|.||+|+|||++++.|+..+ +..+..++.+..... ..+. .-+|. . ..+.+..........+....+.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~~~~-~~~~-~l~g~--~-~g~~g~~~~~~l~~~~~~~~~~ 559 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL----GIELLRFDMSEYMER-HTVS-RLIGA--P-PGYVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGCSSS-SCCS-SSCCC--C-SCSHHHHHTTHHHHHHHHCSSE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh----cCCEEEEechhhcch-hhHh-hhcCC--C-CCCcCccccchHHHHHHhCCCc
Confidence 379999999999999999999887 345666654321100 0000 00010 0 0122212222223333445678
Q ss_pred EEEEeCCCCCccHHHHHH
Q 038101 273 VIVIDEIGTKLEAMAAST 290 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~ 290 (660)
||++||+.. +.+.....
T Consensus 560 vl~lDEi~~-~~~~~~~~ 576 (758)
T 1r6b_X 560 VLLLDEIEK-AHPDVFNI 576 (758)
T ss_dssp EEEEETGGG-SCHHHHHH
T ss_pred EEEEeCccc-cCHHHHHH
Confidence 999999974 34444433
No 288
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.75 E-value=0.0006 Score=63.63 Aligned_cols=26 Identities=42% Similarity=0.833 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.|.+++|+|+|||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998654
No 289
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.74 E-value=0.0032 Score=72.57 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=46.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
.++|.||+|+|||+|.+.|+..+.. .+..+..++.+..... ...++|. ...++....+.|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s~~~~~---------------~~~~~~~----l~~~~~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG-DEESMIRIDMSEYMEK---------------HSTSGGQ----LTEKVRRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGGGGCSS---------------CCCC-------CHHHHHHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC-CCcceEEEechhcccc---------------cccccch----hhHHHHhCCCeE
Confidence 7999999999999999999988743 2445666664322100 0111221 112233456789
Q ss_pred EEEeCCCCCccHHHHHHH
Q 038101 274 IVIDEIGTKLEAMAASTI 291 (660)
Q Consensus 274 LILDEPgsgLD~~a~~~i 291 (660)
|+|||+.. +.+.....+
T Consensus 583 l~lDEi~~-~~~~~~~~L 599 (758)
T 3pxi_A 583 VLLDAIEK-AHPDVFNIL 599 (758)
T ss_dssp EEEECGGG-SCHHHHHHH
T ss_pred EEEeCccc-cCHHHHHHH
Confidence 99999964 355544443
No 290
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.72 E-value=0.0036 Score=63.38 Aligned_cols=25 Identities=52% Similarity=0.816 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
...++|.||+|+|||||++.|+..+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999999765
No 291
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.72 E-value=0.0018 Score=75.74 Aligned_cols=92 Identities=27% Similarity=0.370 Sum_probs=48.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQ 272 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~ 272 (660)
..++|+||+|+||||+++.|+..+... +..+..++...... ...... -++. ...+.|..+......++....+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~-~~~~i~i~~~~~~~-~~~~s~-l~g~---~~~~~G~~~~g~l~~~~~~~~~~ 662 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMTEYME-KHAVSR-LIGA---PPGYVGYEEGGQLTEAVRRRPYS 662 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS-GGGEEEECTTTCCS-SGGGGG-C-----------------CHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC-CCcEEEEechhccc-hhHHHH-HcCC---CCCCcCccccchHHHHHHhCCCe
Confidence 589999999999999999999987543 34566665432110 000000 0000 00111222212222333345568
Q ss_pred EEEEeCCCCCccHHHHHHH
Q 038101 273 VIVIDEIGTKLEAMAASTI 291 (660)
Q Consensus 273 VLILDEPgsgLD~~a~~~i 291 (660)
+|+|||+. .+++.....+
T Consensus 663 vl~lDEi~-~l~~~~~~~L 680 (854)
T 1qvr_A 663 VILFDEIE-KAHPDVFNIL 680 (854)
T ss_dssp EEEESSGG-GSCHHHHHHH
T ss_pred EEEEeccc-ccCHHHHHHH
Confidence 99999996 4566655554
No 292
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.71 E-value=0.00072 Score=61.77 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
No 293
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.68 E-value=0.0012 Score=77.33 Aligned_cols=73 Identities=23% Similarity=0.445 Sum_probs=49.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENH 269 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~ 269 (660)
.....++|.||||||||.|.++||+.. +..+..+..+..+. +.++ .....=|-.+..|..+
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~----~~~f~~v~~~~l~s-------------~~vG--ese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIKGPELLT-------------MWFG--ESEANVREIFDKARQA 569 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTT----TCEEEECCHHHHHT-------------TTCS--SCHHHHHHHHHHHHTT
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHh----CCceEEeccchhhc-------------cccc--hHHHHHHHHHHHHHHc
Confidence 334578999999999999999999875 33444443222210 0111 1234455667888889
Q ss_pred CCcEEEEeCCCC
Q 038101 270 MPQVIVIDEIGT 281 (660)
Q Consensus 270 ~P~VLILDEPgs 281 (660)
.|.||++||+-+
T Consensus 570 ~P~IifiDEiDs 581 (806)
T 3cf2_A 570 APCVLFFDELDS 581 (806)
T ss_dssp CSEEEECSCGGG
T ss_pred CCceeechhhhH
Confidence 999999999965
No 294
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.66 E-value=0.0015 Score=64.74 Aligned_cols=36 Identities=36% Similarity=0.523 Sum_probs=30.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEE
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMI 226 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~ 226 (660)
+..|.+++|.|++||||||+++.|+..+.. |..+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee
Confidence 457899999999999999999999999876 444543
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.66 E-value=0.001 Score=61.62 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.64 E-value=0.0007 Score=64.55 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 297
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.63 E-value=0.0034 Score=62.73 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=63.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC--ccccCCCCCCCCCCcc-ccCCCCCHHHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS--EIGGNGDIPHPGIGNA-RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~--eIa~~~~ip~~~Lg~~-rrl~vLSgG~qqrv~IA~a 266 (660)
..|.+..+.|+-|+||||.|..++.-+.. .|++|.++.-.. ..+...-..+.++... ..+.... -.+..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~------~~~~~- 97 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASK------DIFKH- 97 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEEECC-----------------CCEEECSSGG------GGGGG-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHH------HHHHH-
Confidence 45889999999999999988777655533 467777663211 1110011112222110 0011110 00000
Q ss_pred HccCCcEEEEeCCCCCcc---HHHHHHHHhcCCEEEEEEcCh----------hHHHHhcCcEEEE
Q 038101 267 ENHMPQVIVIDEIGTKLE---AMAASTIAQRGIQLVATAHGV----------TIENLIMNPSLEM 318 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD---~~a~~~i~~~GvtVI~TtH~~----------~l~~~i~dril~l 318 (660)
...+.++|++||.-. +| ......+++.|+.||++.++. ..+..++|.+..+
T Consensus 98 ~~~~~dvViIDEaQF-~~~~~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel 161 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQF-FDGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKL 161 (214)
T ss_dssp CCSSCCEEEECCGGG-SCTTHHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEEC
T ss_pred HhcCCCEEEEECccc-CCHHHHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEee
Confidence 012589999999964 33 233444467899999999943 3344466666543
No 298
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.0023 Score=64.28 Aligned_cols=24 Identities=38% Similarity=0.646 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.++|.||+|+||||+++.++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999998763
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.61 E-value=0.0012 Score=63.42 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
..++|+|++|||||||++.|++.+.. .+.+++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~ 41 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIK 41 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEe
Confidence 57899999999999999999998764 355677654
No 300
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.61 E-value=0.001 Score=61.82 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+.+|+|||||||||+|.+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999998654
No 301
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.61 E-value=0.002 Score=70.35 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=66.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCc---c-----ccCCCCCCCCCCccccCCC--CCHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSE---I-----GGNGDIPHPGIGNARRMQV--PNSEMQ 258 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~e---I-----a~~~~ip~~~Lg~~rrl~v--LSgG~q 258 (660)
+.+|+.++|.|+||+|||||+..++...... |.+|.|+.-... + +...+++...+ +-+. ++..+.
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l----~~g~~~l~~~~~ 268 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKI----KAARRDFASEDW 268 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHHHHHHHHHHSCCCHHHH----HHTGGGTCCSCH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHHHHHHHHHHcCCCHHHH----hcccCCCCHHHH
Confidence 7889999999999999999999988766543 678888864321 1 00011110000 0111 444455
Q ss_pred HHHHHHHHHccCCcEEEEeCCCCCccHHH--HHHH-HhcCCE--EEEEEc
Q 038101 259 HKVLIEAVENHMPQVIVIDEIGTKLEAMA--ASTI-AQRGIQ--LVATAH 303 (660)
Q Consensus 259 qrv~IA~aL~~~P~VLILDEPgsgLD~~a--~~~i-~~~Gvt--VI~TtH 303 (660)
+++.-+.....+..+.|.|+|+..++... ++.+ .+.|.. +|++=+
T Consensus 269 ~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 269 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 56666655555677888888864433322 1222 345777 777654
No 302
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.57 E-value=0.005 Score=69.38 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
.+.+++|.|+||+||||+++.|+..+.. .|.+|.++-
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~A 239 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLCA 239 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEec
Confidence 4679999999999999999999987764 356676653
No 303
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.56 E-value=0.0024 Score=69.73 Aligned_cols=28 Identities=36% Similarity=0.633 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
....+++|+||||+||||+++.|+..+.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998874
No 304
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.54 E-value=0.0051 Score=61.27 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|.+|+|||||++.|.|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998764
No 305
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.54 E-value=0.0012 Score=61.64 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 306
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.53 E-value=0.0012 Score=61.23 Aligned_cols=26 Identities=23% Similarity=0.541 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+|..++|+|+||||||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999999864
No 307
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.52 E-value=0.0059 Score=77.59 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=67.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc----CCCCCCCCCCccccCCCCCHHHHHHHHHH
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG----NGDIPHPGIGNARRMQVPNSEMQHKVLIE 264 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~----~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA 264 (660)
+.+|.++.|.||||+|||||+..++..... .|..+.|++....... ..++....+ .-.+..+..+ -..++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~-~G~~vlyis~E~s~~~~~a~~lGvd~~~L---~I~~~~~~e~--il~~~ 453 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIYARKLGVDIDNL---LCSQPDTGEQ--ALEIC 453 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHHHHHTTCCTTTC---EEECCSSHHH--HHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCHHHHHHHHcCCCHHHe---EEeCCCCHHH--HHHHH
Confidence 668999999999999999999988876653 3567899987543311 011111111 0112233332 22233
Q ss_pred H--HHccCCcEEEEeCCCCCcc--------------HHHH------HHH----HhcCCEEEEEEcCh
Q 038101 265 A--VENHMPQVIVIDEIGTKLE--------------AMAA------STI----AQRGIQLVATAHGV 305 (660)
Q Consensus 265 ~--aL~~~P~VLILDEPgsgLD--------------~~a~------~~i----~~~GvtVI~TtH~~ 305 (660)
+ +..+.|++||+|.+..-.. .+.+ +.+ ++.|++||++.|-.
T Consensus 454 ~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~ 520 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 520 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred HHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3 3357899999999975331 1111 112 57899999999843
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0013 Score=61.09 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998664
No 309
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.50 E-value=0.0017 Score=70.81 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
.+++|+|++|+||||++..|++.+... |++|.+++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecc
Confidence 589999999999999999999988754 7789988764
No 310
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.49 E-value=0.0013 Score=59.43 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 038101 194 SLLFIGPPGVGKTTIIREI 212 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~I 212 (660)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 311
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.42 E-value=0.002 Score=60.83 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999876
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.39 E-value=0.0018 Score=59.61 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 038101 193 ASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iag 214 (660)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.39 E-value=0.0016 Score=61.18 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998763
No 314
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.36 E-value=0.0022 Score=69.91 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC-CCC----CCCCCCccccCCCCCHHHHHHHHHHH
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN-GDI----PHPGIGNARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~-~~i----p~~~Lg~~rrl~vLSgG~qqrv~IA~ 265 (660)
++.+++|+|++||||||++..|++.+... |.+|.+++....-.+. ..+ ...++.-...-...++..-.+-.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~ 175 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999875 6678888764211000 000 00011000000011222222234445
Q ss_pred HHccCCcEEEEeCCCC-CccHHHHHH
Q 038101 266 VENHMPQVIVIDEIGT-KLEAMAAST 290 (660)
Q Consensus 266 aL~~~P~VLILDEPgs-gLD~~a~~~ 290 (660)
+.....|++|+|=|+. +.|.....+
T Consensus 176 ~~~~~~DvVIIDTaG~l~~d~~l~~e 201 (425)
T 2ffh_A 176 ARLEARDLILVDTAGRLQIDEPLMGE 201 (425)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHH
T ss_pred HHHCCCCEEEEcCCCcccccHHHHHH
Confidence 5457889999998875 446544433
No 315
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.36 E-value=0.0023 Score=59.34 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
+++|.|++||||||+.+.|+..+.. .|..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN-QGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCceEEEEE
Confidence 6899999999999999999987753 355566665
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.35 E-value=0.002 Score=60.84 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
..|.+++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999976
No 317
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.35 E-value=0.0018 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999765
No 318
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.34 E-value=0.0055 Score=60.43 Aligned_cols=127 Identities=16% Similarity=0.062 Sum_probs=70.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC------c---cccCCCCC--CCCCCccccCCCCC---HHH
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS------E---IGGNGDIP--HPGIGNARRMQVPN---SEM 257 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~------e---Ia~~~~ip--~~~Lg~~rrl~vLS---gG~ 257 (660)
...+.+.+.||.||||+.-.++ +-+...|.+|.++.--. | +..+ .+. ..+.+-....+... ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~Gla-lRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTA-ARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHH-HHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH-HHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHH
Confidence 3578889999999999988876 33335688999883211 1 0001 010 01111000000000 011
Q ss_pred HHHHHHHHHHc--cCCcEEEEeCCCCC-----ccHHHHHHH-H--hcCCEEEEEEcCh-hHHHHhcCcEEEEEc
Q 038101 258 QHKVLIEAVEN--HMPQVIVIDEIGTK-----LEAMAASTI-A--QRGIQLVATAHGV-TIENLIMNPSLEMLI 320 (660)
Q Consensus 258 qqrv~IA~aL~--~~P~VLILDEPgsg-----LD~~a~~~i-~--~~GvtVI~TtH~~-~l~~~i~dril~l~~ 320 (660)
+.....++..+ ...++|||||++.. ++......+ . -....||+|..+. ...-.++|-+--|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 22233333344 56899999999763 555554444 2 3468999999754 344557888866643
No 319
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.33 E-value=0.006 Score=62.88 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=29.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
...+..++|.|++|+|||++++.|+..... .+..+..++.
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~ 61 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSAR-SDRPLVTLNC 61 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSSC-SSSCCCEEEC
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCcc-cCCCeEEEeC
Confidence 456789999999999999999999976532 2334445543
No 320
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.32 E-value=0.0022 Score=61.61 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
..++|+|++|||||||+..|++.+.. .|.+|+++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR-EGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh-cCCeeeEEEe
Confidence 47899999999999999999998864 3667887754
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.32 E-value=0.0018 Score=60.49 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998665
No 322
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.31 E-value=0.0015 Score=60.75 Aligned_cols=23 Identities=43% Similarity=0.753 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999765
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0021 Score=63.21 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999865
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0021 Score=60.66 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987654
No 325
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.28 E-value=0.00087 Score=72.88 Aligned_cols=51 Identities=29% Similarity=0.403 Sum_probs=40.0
Q ss_pred eEEEEeEEEEECccccccccccc--------------cc---ccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 164 KGAIIGLTCRVGRAVSGSANLLQ--------------DL---VQDGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 164 ~LeI~~Lt~rygr~v~G~a~iL~--------------dl---I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.+.++||+..|... ...+. |+ +.+|+.++|+||+|||||||++.|++.+..
T Consensus 133 ri~Fe~ltp~yP~e----r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 133 KILFENLTPLHANS----RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp SCCTTTSCEESCCS----BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CceeccccccCCCC----ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 35677888888653 12344 44 789999999999999999999999998753
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.28 E-value=0.002 Score=60.26 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=24.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.++.+++|+|++||||||+.+.|+..+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999998765
No 327
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.27 E-value=0.011 Score=59.91 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=57.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC--CccccCCCCCCCCCCcc-ccCCCCCHHHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS--SEIGGNGDIPHPGIGNA-RRMQVPNSEMQHKVLIEAV 266 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~--~eIa~~~~ip~~~Lg~~-rrl~vLSgG~qqrv~IA~a 266 (660)
..|.+..+.|+-|+||||.|--.+.-.. ..|++|.++.-. ...+ ..-..+.++... ..+.... . .+..
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~--d----i~~~- 87 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLR--D----VAQE- 87 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTCCCC------------CEEEEESSGG--G----GHHH-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHH--H----HHHH-
Confidence 3588999999999999976554443332 346777765421 1111 111222222210 0111111 1 1122
Q ss_pred HccCCcEEEEeCCCCCccHHH-HHHHHhcCCEEEEEEcChh
Q 038101 267 ENHMPQVIVIDEIGTKLEAMA-ASTIAQRGIQLVATAHGVT 306 (660)
Q Consensus 267 L~~~P~VLILDEPgsgLD~~a-~~~i~~~GvtVI~TtH~~~ 306 (660)
+.+.++|++||.---.+... .+.+.+.|+.||++.++.+
T Consensus 88 -~~~~dvViIDEaQF~~~v~el~~~l~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 88 -ALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGT 127 (234)
T ss_dssp -HTTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEECCSBC
T ss_pred -hccCCEEEEEchhhhhhHHHHHHHHHhCCCEEEEEecccc
Confidence 26789999999976555333 2334678999999999843
No 328
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.24 E-value=0.0015 Score=65.09 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
...+..++|+|+|||||||+.+.|+..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34568999999999999999999998764
No 329
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.0024 Score=58.90 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 330
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.18 E-value=0.0026 Score=60.44 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..|.+++|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999997654
No 331
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.15 E-value=0.0021 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0027 Score=59.00 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998654
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.13 E-value=0.0045 Score=65.41 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEI 233 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eI 233 (660)
.+.+++|+||+|+||||+++.|+..+... |.+|.++|...+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-CCEEEEEeCCcCH
Confidence 56789999999999999999999877653 5567777765543
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.11 E-value=0.0029 Score=60.03 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..|.+++|.|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999997764
No 335
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.11 E-value=0.002 Score=68.97 Aligned_cols=29 Identities=31% Similarity=0.791 Sum_probs=26.1
Q ss_pred ccCCcE--EEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGAS--LLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~--ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
++.|+. ++|+|+|||||||+.++|++.+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 677876 99999999999999999999874
No 336
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.03 E-value=0.0037 Score=60.18 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 038101 192 GASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~Iag 214 (660)
+-+++|.|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 337
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.03 E-value=0.0032 Score=63.15 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999865
No 338
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.03 E-value=0.0029 Score=61.45 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+.+|+|||||||||++.+|.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 589999999999999999997655
No 339
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.01 E-value=0.0035 Score=60.55 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.|-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998765
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.00 E-value=0.0033 Score=58.96 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+.+++|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999765
No 341
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.00 E-value=0.0016 Score=61.91 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
+++|.|++||||||+++.|+..+... |..|.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~-g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA-GRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 68999999999999999999887542 44455443
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.98 E-value=0.0026 Score=58.99 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=18.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
++.+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998665
No 343
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.94 E-value=0.0048 Score=66.97 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|||||||++.|+|.
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999999874
No 344
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.94 E-value=0.0037 Score=57.58 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
++++|+|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998765
No 345
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.91 E-value=0.0028 Score=65.22 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+..++|+|+||||||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999863
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.89 E-value=0.0044 Score=58.91 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+-+++|+|++||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.87 E-value=0.0043 Score=60.35 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998654
No 348
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.84 E-value=0.002 Score=66.07 Aligned_cols=29 Identities=28% Similarity=0.590 Sum_probs=25.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+..|..++|.||||+|||||++.|+..+.
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 44577999999999999999999998763
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.84 E-value=0.0051 Score=57.84 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 358999999999999999999975
No 350
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.83 E-value=0.009 Score=58.89 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=60.3
Q ss_pred cCCcEEEEEcCCCCcHH-HHHHHHHhccccCCCCeEEEEcCCC--ccccCCCCCCCCCCc-cccCCCCCHHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKT-TIIREIARVLANDYKKRVMIVDTSS--EIGGNGDIPHPGIGN-ARRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKT-TLLR~IaglL~p~~GkrV~~Vdq~~--eIa~~~~ip~~~Lg~-~rrl~vLSgG~qqrv~IA~ 265 (660)
..|.++.|.||.||||| .||+.+.+... .+++|.++...- ..+ .+-..+.++.. +......+. -+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d-~~~------ 87 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRD-VAQ------ 87 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGG-GHH------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccccCccch-hhhhhccCCcccceecCCHHH-HHH------
Confidence 35889999999999999 77777766543 357777774221 111 11111111000 001111110 111
Q ss_pred HHccCCcEEEEeCCCCCccH-HHHHHHHhcCCEEEEEEcChhH
Q 038101 266 VENHMPQVIVIDEIGTKLEA-MAASTIAQRGIQLVATAHGVTI 307 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~-~a~~~i~~~GvtVI~TtH~~~l 307 (660)
...+.++|++||.=-=-|. .....+.+.|++||++..+.++
T Consensus 88 -~~~~~DvIlIDEaQFfk~~ve~~~~L~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 88 -EALGVAVIGIDEGQFFPDIVEFCEAMANAGKTVIVAALDGTF 129 (195)
T ss_dssp -HHHTCSEEEESSGGGCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred -hccCCCEEEEEchhhhHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 1346899999998643221 1234457899999999998763
No 351
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.82 E-value=0.0063 Score=59.78 Aligned_cols=38 Identities=32% Similarity=0.525 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSS 231 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~ 231 (660)
.-++++.|+.|+|||||+..|+..+. .|++|.+++...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~ 51 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDT 51 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 35889999999999999999998887 578899887543
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.80 E-value=0.0044 Score=57.99 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV 227 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~V 227 (660)
+++|.|++||||||+.+.|+..+.. .|..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEe
Confidence 5899999999999999999987643 25445433
No 353
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.79 E-value=0.0099 Score=64.85 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccC----------CCCCCCCCCccccCCCCCHHHHHHH
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGN----------GDIPHPGIGNARRMQVPNSEMQHKV 261 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~----------~~ip~~~Lg~~rrl~vLSgG~qqrv 261 (660)
..+++++|++|+||||+.-.|+..+....|++|.+++....-.+. .+++-...+ ...++...-+-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~-----~~~dp~~i~~~ 174 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD-----VGQKPVDIVNA 174 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCC-----SSSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCC-----CCCCHHHHHHH
Confidence 358899999999999999999988875438899998875321100 011100000 01233332233
Q ss_pred HHHHHHccCCcEEEEeCCCC-CccHHHHHH
Q 038101 262 LIEAVENHMPQVIVIDEIGT-KLEAMAAST 290 (660)
Q Consensus 262 ~IA~aL~~~P~VLILDEPgs-gLD~~a~~~ 290 (660)
.+..+...+.+++|+|=|+. +.|......
T Consensus 175 ~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~ 204 (433)
T 2xxa_A 175 ALKEAKLKFYDVLLVDTAGRLHVDEAMMDE 204 (433)
T ss_dssp HHHHHHHTTCSEEEEECCCCCTTCHHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCcccccHHHHHH
Confidence 44444446889999999985 344444333
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.78 E-value=0.0047 Score=59.23 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.78 E-value=0.0048 Score=59.10 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 356
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.77 E-value=0.0045 Score=58.39 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999865
No 357
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.77 E-value=0.0043 Score=63.57 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+..++|.|||||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 358
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.76 E-value=0.0044 Score=57.40 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998754
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.76 E-value=0.0047 Score=57.42 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 360
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.73 E-value=0.01 Score=68.25 Aligned_cols=96 Identities=24% Similarity=0.373 Sum_probs=50.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccccC------CCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLAND------YKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLI 263 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~------~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~I 263 (660)
....+++|+||||+||||+.+.|+..+... .+..+..++. +. ...+... .+-+-.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------------g~-~~~G~~e--~~l~~~~ 260 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------------GT-KYRGEFE--DRLKKVM 260 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------------------C--TTHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------cc-cccchHH--HHHHHHH
Confidence 345689999999999999999999887432 1122221111 00 0011111 1223344
Q ss_pred HHHHccCCcEEEEeCCCCCccHHHHH--HHHhcCCEEEEEEcChh
Q 038101 264 EAVENHMPQVIVIDEIGTKLEAMAAS--TIAQRGIQLVATAHGVT 306 (660)
Q Consensus 264 A~aL~~~P~VLILDEPgsgLD~~a~~--~i~~~GvtVI~TtH~~~ 306 (660)
..+....|-+|++| ...|....- .+....+.+|++|....
T Consensus 261 ~~~~~~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 261 DEIRQAGNIILFID---AAIDASNILKPSLARGELQCIGATTLDE 302 (758)
T ss_dssp HHHHTCCCCEEEEC---C--------CCCTTSSSCEEEEECCTTT
T ss_pred HHHHhcCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHH
Confidence 55566789999999 333432211 11344578888886544
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.73 E-value=0.004 Score=58.13 Aligned_cols=24 Identities=42% Similarity=0.750 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998765
No 362
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.73 E-value=0.0041 Score=57.07 Aligned_cols=24 Identities=42% Similarity=0.744 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 363
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.69 E-value=0.0065 Score=63.88 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
.-.++|+|++|+|||||+..|++.+.. .|++|++++..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~D 116 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIE-RGHRVAVLAVD 116 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHh-CCCceEEEecC
Confidence 358999999999999999999988764 47788887654
No 364
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.69 E-value=0.045 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 35689999999999999999999765
No 365
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.66 E-value=0.0063 Score=57.65 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998654
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.64 E-value=0.0048 Score=59.66 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998765
No 367
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.63 E-value=0.0078 Score=67.03 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
..+++|+|++||||||++..|+..+.. .|++|.+++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEecc
Confidence 358899999999999999999988764 37788888753
No 368
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.62 E-value=0.0058 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 369
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.62 E-value=0.0054 Score=61.71 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999765
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.62 E-value=0.0063 Score=60.97 Aligned_cols=38 Identities=29% Similarity=0.607 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
.+.+++|.|+|||||||+.+.|+..+.. .|..+.+++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~-~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK-NNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh-CCCEEEEECc
Confidence 4568999999999999999999987542 2444444443
No 371
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.59 E-value=0.0057 Score=61.39 Aligned_cols=23 Identities=35% Similarity=0.673 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 372
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.59 E-value=0.025 Score=56.85 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.56 E-value=0.0073 Score=53.72 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 374
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.56 E-value=0.018 Score=57.86 Aligned_cols=106 Identities=18% Similarity=0.241 Sum_probs=56.0
Q ss_pred cCCcEEEEEcCCCCcHHH-HHHHHHhccccCCCCeEEEEcCC-CccccC-CCCCCCCCCcc-ccCCCCCHHHHHHHHHHH
Q 038101 190 QDGASLLFIGPPGVGKTT-IIREIARVLANDYKKRVMIVDTS-SEIGGN-GDIPHPGIGNA-RRMQVPNSEMQHKVLIEA 265 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTT-LLR~IaglL~p~~GkrV~~Vdq~-~eIa~~-~~ip~~~Lg~~-rrl~vLSgG~qqrv~IA~ 265 (660)
..|.+..|.||-|||||| ||+.+-+... .|+++.++... +.-.+. .-..+.++... ..+..+. . |..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~-d------i~~ 96 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKAS-E------IMT 96 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-----------CBTTBCCEEEEESSGG-G------GGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHH-H------HHH
Confidence 568999999999999999 7788766543 35666554211 110000 11122222110 0011110 0 000
Q ss_pred HHccCCcEEEEeCCCCCccHH---HHHHHHhcCCEEEEEEcCh
Q 038101 266 VENHMPQVIVIDEIGTKLEAM---AASTIAQRGIQLVATAHGV 305 (660)
Q Consensus 266 aL~~~P~VLILDEPgsgLD~~---a~~~i~~~GvtVI~TtH~~ 305 (660)
.+..+.++|++||.-- +|.. ....+++.|+.||+..=+.
T Consensus 97 ~i~~~~dvV~IDEaQF-f~~~~v~~l~~la~~gi~Vi~~GLd~ 138 (219)
T 3e2i_A 97 HDLTNVDVIGIDEVQF-FDDEIVSIVEKLSADGHRVIVAGLDM 138 (219)
T ss_dssp SCCTTCSEEEECCGGG-SCTHHHHHHHHHHHTTCEEEEEEESB
T ss_pred HHhcCCCEEEEechhc-CCHHHHHHHHHHHHCCCEEEEeeccc
Confidence 0135789999999853 2322 2444568899999887444
No 375
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.55 E-value=0.0062 Score=55.05 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5799999999999999999864
No 376
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.55 E-value=0.055 Score=55.68 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
..++|+|++|||||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58899999999999999999875
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.54 E-value=0.007 Score=53.62 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++++|++|||||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
No 378
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.54 E-value=0.0059 Score=63.03 Aligned_cols=27 Identities=41% Similarity=0.716 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.|..++|.||||+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999998875
No 379
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.53 E-value=0.0074 Score=54.03 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 380
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0074 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-.++|+|++|||||||++.+++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 381
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.49 E-value=0.0078 Score=53.57 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 382
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.49 E-value=0.008 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 383
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.49 E-value=0.0077 Score=59.86 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=24.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+..++.|+|||||||+|..+.|+..+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5566799999999999999999998654
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.47 E-value=0.0079 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 385
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.46 E-value=0.0069 Score=58.84 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.+.|+||+|||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 368999999999999999976553
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.45 E-value=0.0069 Score=58.66 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
|-.++|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998765
No 387
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.42 E-value=0.023 Score=64.20 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=37.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccC---CCCeEEEEcCCC-ccccCCCCCCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLAND---YKKRVMIVDTSS-EIGGNGDIPHP 242 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~---~GkrV~~Vdq~~-eIa~~~~ip~~ 242 (660)
+..+-+++|.|.+|||||++|+.|+.-+... ..-++.++|-.. ++..+.++||.
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl 268 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHL 268 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTB
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcc
Confidence 3446799999999999999999876533211 123567777553 55556677775
No 388
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.41 E-value=0.013 Score=61.76 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 038101 193 ASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iag 214 (660)
.+++|+|+||+||||+|-+|.=
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 389
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.40 E-value=0.011 Score=56.41 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDT 229 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq 229 (660)
-.++|+|++|+|||||++.|++.+... .++++++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~~ 65 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAMLG 65 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEec
Confidence 588999999999999999999876432 46777653
No 390
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.40 E-value=0.0088 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998754
No 391
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.38 E-value=0.006 Score=54.78 Aligned_cols=22 Identities=41% Similarity=0.833 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4799999999999999999754
No 392
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.38 E-value=0.009 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 393
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.37 E-value=0.011 Score=58.57 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=31.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCC
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTS 230 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~ 230 (660)
...+..++|.||+|+|||||++.|+...... +..+.+++..
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~~~ 66 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCA 66 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEEGG
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEecC
Confidence 4556899999999999999999999876532 3456666543
No 394
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.36 E-value=0.008 Score=53.90 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 395
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.36 E-value=0.0085 Score=53.85 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999865
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.36 E-value=0.0078 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
No 397
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.35 E-value=0.0086 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 398
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.34 E-value=0.0094 Score=54.08 Aligned_cols=22 Identities=23% Similarity=0.600 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 399
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.33 E-value=0.0093 Score=58.39 Aligned_cols=27 Identities=33% Similarity=0.706 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+.+++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999765
No 400
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.31 E-value=0.035 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|.+|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 401
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.31 E-value=0.06 Score=55.80 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=24.8
Q ss_pred ccCC---cEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 189 VQDG---ASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 189 I~~G---e~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
+..| ..++|.||+|+||||+.+.++..+..
T Consensus 18 i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 18 YQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4444 36999999999999999999987653
No 402
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.30 E-value=0.0099 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998653
No 403
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.29 E-value=0.0058 Score=61.72 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 188 LVQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 188 lI~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+..|.+++|.||.|+|||||++.++...
T Consensus 27 ~l~~~~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 27 SLENYPLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred HHhcCCeEEEECCCcCCHHHHHHHHHHHc
Confidence 35557899999999999999999998654
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.27 E-value=0.0091 Score=58.61 Aligned_cols=23 Identities=43% Similarity=0.837 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
++.|+|||||||+|..+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
No 405
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.26 E-value=0.0093 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998765
No 406
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.26 E-value=0.0095 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 407
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.0075 Score=54.65 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999753
No 408
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.25 E-value=0.009 Score=57.52 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 409
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.25 E-value=0.0095 Score=54.64 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 410
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.24 E-value=0.012 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.+.-.++|+|++|||||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999864
No 411
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.23 E-value=0.01 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999875
No 412
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.23 E-value=0.016 Score=65.44 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcccc---CCCCeEEEEcC
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLAN---DYKKRVMIVDT 229 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p---~~GkrV~~Vdq 229 (660)
.+..++|.|++|+||||++..|...+.. ..+.+|.++-.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 5689999999999999999988766542 23446665533
No 413
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.22 E-value=0.011 Score=58.78 Aligned_cols=27 Identities=26% Similarity=0.523 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..+-.++|+||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998654
No 414
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.22 E-value=0.0097 Score=54.73 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
.++|+|++|+|||||++.+.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5799999999999999999886644
No 415
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.21 E-value=0.0087 Score=62.47 Aligned_cols=26 Identities=42% Similarity=0.804 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+..++|.||||+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999886
No 416
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.20 E-value=0.011 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
No 417
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.18 E-value=0.01 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999998643
No 418
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.17 E-value=0.006 Score=67.34 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=24.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+| +.+|+|+|||||||||.+|..++
T Consensus 58 f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp CCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 5566 99999999999999999998775
No 419
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.16 E-value=0.0063 Score=67.60 Aligned_cols=29 Identities=31% Similarity=0.704 Sum_probs=26.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+..|..++|.||||+|||+|++.|+..+.
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 55678999999999999999999998773
No 420
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.15 E-value=0.011 Score=53.69 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 57999999999999999998653
No 421
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.14 E-value=0.0099 Score=55.08 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
--.++|+|++|+|||||++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 422
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.11 E-value=0.0094 Score=64.38 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|+||||||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999875
No 423
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.10 E-value=0.078 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
..++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999865
No 424
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=54.95 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999998743
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.09 E-value=0.012 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 426
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.07 E-value=0.026 Score=53.09 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=57.1
Q ss_pred EEEEE-cCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCcccc--CCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccC
Q 038101 194 SLLFI-GPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGG--NGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHM 270 (660)
Q Consensus 194 ~ilIl-GPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~--~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~ 270 (660)
+++|. +..|+||||+.-.|+..++. .|++|.++|....-.. .......+ +..+..+..+...+...+..+
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~l~~~ 75 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQMSLTNWSKAGKAA------FDVFTAASEKDVYGIRKDLAD 75 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHTTSCCS------SEEEECCSHHHHHTHHHHTTT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCCCHHHHHhcCCCC------CcEEecCcHHHHHHHHHhcCC
Confidence 45666 67889999999999998886 5889999987532110 00000001 111111111222223344567
Q ss_pred CcEEEEeCCCCCccHHHHHHHHhcCCEEEEEE
Q 038101 271 PQVIVIDEIGTKLEAMAASTIAQRGIQLVATA 302 (660)
Q Consensus 271 P~VLILDEPgsgLD~~a~~~i~~~GvtVI~Tt 302 (660)
.|++|+|=|... +......+......++.+.
T Consensus 76 yD~viiD~~~~~-~~~~~~~l~~ad~viiv~~ 106 (206)
T 4dzz_A 76 YDFAIVDGAGSL-SVITSAAVMVSDLVIIPVT 106 (206)
T ss_dssp SSEEEEECCSSS-SHHHHHHHHHCSEEEEEEC
T ss_pred CCEEEEECCCCC-CHHHHHHHHHCCEEEEEec
Confidence 999999988755 5554444444444444444
No 427
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.06 E-value=0.011 Score=54.40 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-.++|+|++|||||||++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998653
No 428
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.04 E-value=0.012 Score=52.68 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 429
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.04 E-value=0.011 Score=58.53 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccC----CCCeEEEEcCCC
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLAND----YKKRVMIVDTSS 231 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~----~GkrV~~Vdq~~ 231 (660)
-+++|.|++||||||+.+.|+..+... .+..+.+++...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 479999999999999999998865321 234566666543
No 430
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.04 E-value=0.011 Score=53.35 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 431
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.04 E-value=0.011 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 432
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.03 E-value=0.13 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999753
No 433
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.03 E-value=0.013 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6799999999999999999864
No 434
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.02 E-value=0.0089 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.-.++|+|++|||||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 435
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.01 E-value=0.013 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998643
No 436
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.01 E-value=0.013 Score=55.71 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-.++|+|++|+|||||++.+++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998764
No 437
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.97 E-value=0.013 Score=55.06 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|||||||++.+.+-
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999863
No 438
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.96 E-value=0.013 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.94 E-value=0.014 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999998643
No 440
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.89 E-value=0.013 Score=53.71 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|||||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998643
No 441
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.89 E-value=0.015 Score=53.80 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6799999999999999999864
No 442
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.88 E-value=0.012 Score=63.71 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=25.7
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHhc
Q 038101 185 LQDLVQDGASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 185 L~dlI~~Ge~ilIlGPnGsGKTTLLR~Iagl 215 (660)
+...+..|..++|+|+||+|||||++.|++.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3344777889999999999999999999975
No 443
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.87 E-value=0.013 Score=59.69 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|+||||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 444
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.85 E-value=0.0091 Score=56.57 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=23.5
Q ss_pred cccccc-c-cCCcEEEEEcCCCCcHHHHHHHHHh
Q 038101 183 NLLQDL-V-QDGASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 183 ~iL~dl-I-~~Ge~ilIlGPnGsGKTTLLR~Iag 214 (660)
.+++++ + .+.-.++|+|++|||||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345554 2 2223689999999999999999974
No 445
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.84 E-value=0.014 Score=58.82 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.+++|.|+|||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 446
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.82 E-value=0.014 Score=54.33 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999864
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.80 E-value=0.0086 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHh
Q 038101 191 DGASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~Iag 214 (660)
..-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456889999999999999998863
No 448
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.80 E-value=0.014 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999875
No 449
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.78 E-value=0.015 Score=53.76 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 450
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.78 E-value=0.015 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999754
No 451
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.78 E-value=0.016 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 67999999999999999998653
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.75 E-value=0.015 Score=53.86 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998653
No 453
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.74 E-value=0.017 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999854
No 454
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.015 Score=53.84 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999874
No 455
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.72 E-value=0.013 Score=62.25 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.++|+|+||||||||++.|+|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998754
No 456
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.72 E-value=0.024 Score=55.76 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEE
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIV 227 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~V 227 (660)
.|.++.|.|++||||||+++.|+..+.. .|..|...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcccc
Confidence 4779999999999999999999988764 35555444
No 457
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.71 E-value=0.1 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999876
No 458
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.68 E-value=0.017 Score=54.09 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999877654
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.64 E-value=0.017 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 460
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.63 E-value=0.018 Score=52.63 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 038101 194 SLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iag 214 (660)
.++|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 579999999999999999984
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.018 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999998653
No 462
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.62 E-value=0.017 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 463
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.61 E-value=0.024 Score=54.20 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVD 228 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vd 228 (660)
-.++|+|.+|||||||++.+++..... .++..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~ 72 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIA 72 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEE
Confidence 578999999999999999998776543 3455554
No 464
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.60 E-value=0.017 Score=53.20 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.-.++|+|++|||||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999998643
No 465
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.60 E-value=0.015 Score=58.10 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 189 VQDGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 189 I~~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+.+...++|.||||+||||+..+|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344579999999999999999999987
No 466
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.59 E-value=0.017 Score=54.42 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.02 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998653
No 468
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.017 Score=53.70 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 67999999999999999998754
No 469
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.54 E-value=0.018 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-.++|+|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368999999999999999998743
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.50 E-value=0.019 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
No 471
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.50 E-value=0.015 Score=53.03 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 472
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.50 E-value=0.021 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6799999999999999999864
No 473
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.50 E-value=0.02 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-+++|+|++||||||+.+.|+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999998763
No 474
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.02 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|||||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 475
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.47 E-value=0.02 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999998753
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.47 E-value=0.019 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038101 194 SLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL 216 (660)
.++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.019 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 478
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.46 E-value=0.021 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.45 E-value=0.019 Score=58.49 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHh
Q 038101 193 ASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iag 214 (660)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 480
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.45 E-value=0.018 Score=55.07 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999999765
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.45 E-value=0.15 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
+..++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999999765
No 482
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.44 E-value=0.017 Score=63.31 Aligned_cols=25 Identities=48% Similarity=0.878 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..++|+|||||||||+.+.|++.+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5689999999999999999999874
No 483
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.39 E-value=0.014 Score=55.31 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6799999999999999999754
No 484
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.022 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHh
Q 038101 192 GASLLFIGPPGVGKTTIIREIAR 214 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~Iag 214 (660)
.-.++|+|++|||||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999985
No 485
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.36 E-value=0.13 Score=55.95 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
.+++|.||+|||||||.+.|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4689999999999999999997653
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.36 E-value=0.023 Score=53.34 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-.++|+|++|+|||||++.+.+-.
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998653
No 487
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.35 E-value=0.02 Score=63.45 Aligned_cols=35 Identities=31% Similarity=0.538 Sum_probs=28.8
Q ss_pred ccccc--ccCCcEEEEEcCCCCcHHHHHHHHHhcccc
Q 038101 184 LLQDL--VQDGASLLFIGPPGVGKTTIIREIARVLAN 218 (660)
Q Consensus 184 iL~dl--I~~Ge~ilIlGPnGsGKTTLLR~IaglL~p 218 (660)
+++.+ +-+|+.++|+|++|+|||||++.|++....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 44444 567899999999999999999999887653
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.32 E-value=0.062 Score=52.16 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=38.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccccCCCCeEEEEcCCCccccCCCCCCCCCCccccCCCCCHHHHHHHHHHHHHccCCcE
Q 038101 194 SLLFIGPPGVGKTTIIREIARVLANDYKKRVMIVDTSSEIGGNGDIPHPGIGNARRMQVPNSEMQHKVLIEAVENHMPQV 273 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~IaglL~p~~GkrV~~Vdq~~eIa~~~~ip~~~Lg~~rrl~vLSgG~qqrv~IA~aL~~~P~V 273 (660)
+++|+|++||||||+...++.. +..+.|+.+... .+..|++|+...+.. ..+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~--------------------~d~e~~~rI~~h~~~-R~~~w 54 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATSQI--------------------LDDEMAARIQHHKDG-RPAHW 54 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC--------------------------CHHHHHHHT-SCTTE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCC--------------------CCHHHHHHHHHHHhc-CCCCc
Confidence 3789999999999999998743 345788877421 134566666555544 23567
Q ss_pred EEEeCCC
Q 038101 274 IVIDEIG 280 (660)
Q Consensus 274 LILDEPg 280 (660)
..+.||.
T Consensus 55 ~tiE~p~ 61 (180)
T 1c9k_A 55 RTAECWR 61 (180)
T ss_dssp EEECCSS
T ss_pred EEEEcHh
Confidence 7777776
No 489
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.31 E-value=0.022 Score=56.26 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|||||||++.|.+.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 490
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.30 E-value=0.023 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6799999999999999988764
No 491
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.29 E-value=0.018 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|||||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999753
No 492
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.29 E-value=0.024 Score=61.05 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 191 DGASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 191 ~Ge~ilIlGPnGsGKTTLLR~IaglL 216 (660)
...+++|+|+|||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998654
No 493
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.018 Score=60.42 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 190 QDGASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 190 ~~Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
..+.++.|.||||+|||++++.++..+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999998875
No 494
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.26 E-value=0.02 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6799999999999999999753
No 495
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.26 E-value=0.012 Score=59.95 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHhccc
Q 038101 192 GASLLFIGPPGVGKTTIIREIARVLA 217 (660)
Q Consensus 192 Ge~ilIlGPnGsGKTTLLR~IaglL~ 217 (660)
+..++|.||+|+|||||++.|+..+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999998764
No 496
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.23 E-value=0.022 Score=53.97 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|||||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
No 497
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.22 E-value=0.021 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~Iagl 215 (660)
-.++|+|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 498
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.022 Score=54.37 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6799999999999999998764
No 499
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.20 E-value=0.023 Score=58.56 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038101 194 SLLFIGPPGVGKTTIIREIARV 215 (660)
Q Consensus 194 ~ilIlGPnGsGKTTLLR~Iagl 215 (660)
.++|+|.||+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 500
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.18 E-value=0.017 Score=53.53 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHhcc
Q 038101 193 ASLLFIGPPGVGKTTIIREIARVL 216 (660)
Q Consensus 193 e~ilIlGPnGsGKTTLLR~IaglL 216 (660)
-.++|+|++|||||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998654
Done!