BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038104
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 251 bits (642), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 188/548 (34%), Positives = 272/548 (49%), Gaps = 52/548 (9%)
Query: 19 FLKRAAAVYGNR--TSIIYEGA--RFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNI 74
FL+RAAA++G + S ++ G R + + Y R + V+ L N
Sbjct: 23 FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 82
Query: 75 PAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALK--LY 132
E +FAVP AVL+T N RL K +A IL H+E KV D + L EA++ L
Sbjct: 83 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV-EAIRGELK 141
Query: 133 FVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFV-QMGDPRFLPEEIHDEWDPITLNYT 191
V+ ++ D +P G YE+ + + DP +PE + YT
Sbjct: 142 TVQH--------FVVMDEKAPEGY----LAYEEALGEEADPVRVPERA-----ACGMAYT 184
Query: 192 SGTTSAPKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249
+GTT PKGVVYSHR L +L SL+ G + V L +PMFH N W + G
Sbjct: 185 TGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVG 244
Query: 250 GTNVC----LRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTG 305
V L + +++ VT P V+ L + + +++ G
Sbjct: 245 AKQVLPGPRLDPASLVELFDG---EGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVG 301
Query: 306 GAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEW-QSSWNQLPKPDQAKLKARQGIS 364
G+ P SL+ E +G V YGLTE T P +V + +S L + ++ LKA+ G+
Sbjct: 302 GSAAPRSLIARFERMGVEVRQGYGLTE-TSPVVVQNFVKSHLESLSEEEKLTLKAKTGLP 360
Query: 365 I----LTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFK-NGWF 419
I L +AD + + VP+DGK +GE+ L+G I GY NEEAT + +G+F
Sbjct: 361 IPLVRLRVADEEGR------PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF 414
Query: 420 RTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWG 479
RTGD+ V +GY+EIKDR KD+I SGGE ISSV+LEN L HP+V EAAVVA+PHP+W
Sbjct: 415 RTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQ 474
Query: 480 ESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQ 539
E P A + V +++NE + +++ +P V E+P+T+ GK K
Sbjct: 475 ERPLAVV-VPRGEKPTPEELNE----HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRA 529
Query: 540 LRALAKNF 547
LR KN+
Sbjct: 530 LREQYKNY 537
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 24/360 (6%)
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTW 243
D + + YTSGTT PKGVV++H + + S ++ L LPMFH T
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI 230
Query: 244 GVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASP--VQ 301
A RG T + + A ++ I + RV P + N + Q E E+ +P
Sbjct: 231 FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP--EFAELDAPDFRY 288
Query: 302 ILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQ 361
+TGGAP P +L++ V Y LTE+ G + + + + +A +
Sbjct: 289 FITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATM---- 344
Query: 362 GISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRT 421
DV V+ D + + G+ GE+V++ ++K Y EAT +F NGWFRT
Sbjct: 345 ------FTDVAVRGDDGV--IREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNGWFRT 394
Query: 422 GDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGES 481
GD+G I +GYL IKDR KD+IISGGEN+ E+E+V+ P V E AV+ +P +WGE
Sbjct: 395 GDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEI 454
Query: 482 PCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
A + N +V+E I+ YC L+R+ +PKKV+ +P+ TGKI K LR
Sbjct: 455 AAAIVVADQN------EVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLR 508
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/528 (26%), Positives = 227/528 (42%), Gaps = 51/528 (9%)
Query: 21 KRAAAVYGNRTSIIYEGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPAMYEM 80
+R AA++ +RT+ + +G R R + V++L+ N M E+
Sbjct: 13 RRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIEL 72
Query: 81 HFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAA 140
AV + A+L +N RL+A +A +L V Y RD
Sbjct: 73 IGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDY---------------RDIV 117
Query: 141 GPRVILIDDIDSPTGIRFGEFEYEQFVQMGD--PRFLPEEIHDEWDPITLNYTSGTTSAP 198
+ + + I G + F + P PE D + +T+ P
Sbjct: 118 AGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPE--FGAADGFVIIHTAAVGGRP 175
Query: 199 KGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLRNT 258
+G + S ++ SL+ W + A V L LP+FH G + GG +V
Sbjct: 176 RGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF 235
Query: 259 TAYDMYRNISQHRVTHMC-CAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEI 317
R+I H+VT M AP++ NIL QA P ++AS ++ +TG P +E
Sbjct: 236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP---AQLAS-LRAVTGLDTP--ETIERF 289
Query: 318 ELLGFHVTH--AYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKN 375
E + T +G +E +G + ++ +P + T+A VD ++
Sbjct: 290 EATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGRP----------LFWRTVAVVDAED 339
Query: 376 LDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEI 435
P +GEIVLRG ++ KGY N AT +F+NGW TGD+G DGYL
Sbjct: 340 R------PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFY 393
Query: 436 KDRS--KDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSA 493
R+ K++I +GGEN+ E+E L +HP + +A V+ +P PQW E+ A K +
Sbjct: 394 AGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES 453
Query: 494 GKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
D + E + ++R+ PK VV + LPK A G I + ++
Sbjct: 454 IAADALAE-----FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 215/455 (47%), Gaps = 33/455 (7%)
Query: 86 MAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVI 145
+A + IN RL + + +R + ++ F + L ++ ++D + AG +
Sbjct: 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCT---LPLELRGFQIVSLDDIEFAGRDIT 126
Query: 146 LIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSH 205
+D+ GI++ + E V P + + D ++ +TSGTT K V +
Sbjct: 127 TNGLLDNTMGIQY-DTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTF 185
Query: 206 RGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYR 265
R Y S + +L LP++H +G + G T + A +
Sbjct: 186 RNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILT 245
Query: 266 NISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIELLGFHVT 325
I R+TH+ P N L+Q E + +IL GGA A+++E +
Sbjct: 246 MIKNERITHISLVPQTLNWLMQQGLHEPYNLQ---KILLGGAKLSATMIETALQYNLPIY 302
Query: 326 HAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRD 385
+++G+TE L P+ L AR + A+VDVK + + ++
Sbjct: 303 NSFGMTETCSQFLTA----------TPEM--LHARPDTVGMPSANVDVK----IKNPNKE 346
Query: 386 GKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIIS 445
G GE++++G+++M GYL + T +F+NG+F TGD+ I +GY+ I DR KD+IIS
Sbjct: 347 GH--GELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS 403
Query: 446 GGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADIL 505
GGENI ++E V + P + +A V P WG+ P + ++ D+++A ++
Sbjct: 404 GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES-------DISKAQLI 456
Query: 506 SYCRENLSRFMVPKKVVILPELPKTATGKIQKFQL 540
+Y ++L+++ VPK + LP T+TGK+Q+ +L
Sbjct: 457 AYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 143/497 (28%), Positives = 226/497 (45%), Gaps = 39/497 (7%)
Query: 63 KHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYV 122
++ VV +L PN P A A N +A + S K+ + +YV
Sbjct: 112 QNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYV 171
Query: 123 QLAREALKLYFVEDRDAAGPRVILIDDIDS---PTG-IRFGEFEYEQFVQMGDPRFLPEE 178
K+ +++ D G ++ IDD +S P G +RF E Q E
Sbjct: 172 D------KIKPLQNDD--GVVIVCIDDNESVPIPEGCLRFTELT--QSTTEASEVIDSVE 221
Query: 179 IHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWE----MGSAPVYLWSLPMF 234
I + D + L Y+SGTT PKGV+ +H+G S + G S V L LPMF
Sbjct: 222 ISPD-DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMF 280
Query: 235 HCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQH-RVTHMCCAPIVFNILLQAKPEER 293
H R G + + ++ + Q +VT P + + ++ E+
Sbjct: 281 HIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEK 340
Query: 294 KEIASPVQILTGGAPPPASLLEEIELLGF---HVTHAYGLTEATGPALVCEWQSSWNQLP 350
+++S ++++ GA P LE+ F + YG+TEA GP L + P
Sbjct: 341 YDLSS-IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA-GPVLAMSLGFAKEPFP 398
Query: 351 KPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEAT 410
+K+ +++ A++ + + DT S+ R+ GEI +RG IMKGYL N AT
Sbjct: 399 ------VKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAAT 450
Query: 411 SQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAA 469
+++ K+GW TGD+G+I D L I DR K++I G ++ ELE +L HP + + A
Sbjct: 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVA 510
Query: 470 VVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPK 529
VVAM GE P AF+ VK+ K +++E D+ + + + + KV +PK
Sbjct: 511 VVAMKEEAAGEVPVAFV-VKS----KDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPK 565
Query: 530 TATGKIQKFQLRALAKN 546
+GKI + LRA N
Sbjct: 566 APSGKILRKDLRAKLAN 582
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 143/533 (26%), Positives = 228/533 (42%), Gaps = 52/533 (9%)
Query: 19 FLKRAAAVYGNRTSIIY--EGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPA 76
L+RAA + ++ G R + R + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVED 136
+ A+ AV +N RL + +A +++ E + + + R+ F
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE-----MTAAVIAVGRQVADAIF--- 118
Query: 137 RDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTS 196
+ +G R+I + D+ +R GE Y + DP+ P + P + YTSGTT
Sbjct: 119 QSGSGARIIFLGDL-----VRDGE-PYSYGPPIEDPQREPAQ------PAFIFYTSGTTG 166
Query: 197 APKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG--GTN 252
PK + R A L S +G G V L +P++H G+ F VAA GT
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVAALALDGTY 225
Query: 253 VCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPP 310
V + D + + Q +VT + P + L A ++ S + GA P
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 311 ASLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLA 369
++LE + + L +AYG TEA + + ++ P R G +
Sbjct: 286 DAVLETVHQHLPGEKVNAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV---- 341
Query: 370 DVDVKNLDTMSSVPRDGKTMGEIVLRGS-SIMKGYLKNEEATSQSFKNGWFRTGDVGVIH 428
D V N + GE+++ S S GYL +AT++ ++GW+RT DV V
Sbjct: 342 DEIVANGEE-----------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390
Query: 429 PDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISV 488
P+G + I R D+IISGGENI E+E VL P V E V+ + +WG+S A +
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450
Query: 489 KTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQL 540
+ D ++ ++CR + L+ F PK+ IL +LPK A K+ + QL
Sbjct: 451 RLGETLSADALD-----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 143/533 (26%), Positives = 227/533 (42%), Gaps = 52/533 (9%)
Query: 19 FLKRAAAVYGNRTSIIY--EGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPA 76
L+RAA + ++ G R + R + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVED 136
+ A+ AV +N RL + +A +++ E + + + R+ F
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE-----MTAAVIAVGRQVADAIF--- 118
Query: 137 RDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTS 196
+ +G R+I + D+ +R GE Y + DP+ P + P + YTSGTT
Sbjct: 119 QSGSGARIIFLGDL-----VRDGE-PYSYGPPIEDPQREPAQ------PAFIFYTSGTTG 166
Query: 197 APKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG--GTN 252
PK + R A L S +G G V L +P++H G+ F VAA GT
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVAALALDGTY 225
Query: 253 VCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPP 310
V + D + + Q +VT + P + L A ++ S + GA P
Sbjct: 226 VVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 311 ASLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLA 369
++LE + + L + YG TEA + + ++ P R G +
Sbjct: 286 DAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV---- 341
Query: 370 DVDVKNLDTMSSVPRDGKTMGEIVLRGS-SIMKGYLKNEEATSQSFKNGWFRTGDVGVIH 428
D V N + GE+++ S S GYL EAT++ ++GW+RT DV V
Sbjct: 342 DEIVANGEE-----------GELIVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWT 390
Query: 429 PDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISV 488
P+G + I R D+IISGGENI E+E VL P V E V+ + +WG+S A +
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450
Query: 489 KTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQL 540
+ D ++ ++CR + L+ F PK+ IL +LPK A K+ + QL
Sbjct: 451 RLGETLSADALD-----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 175/383 (45%), Gaps = 35/383 (9%)
Query: 175 LPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMF 234
+PE+ D+ DP + YTSGTT PKG V R + +L W+ V + LP+F
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLF 206
Query: 235 HCNGWTF-TWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNIL---LQAKP 290
H +G G RGG+ L + R ++ T + P +++ + L A P
Sbjct: 207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHRIAETLPADP 265
Query: 291 EERKEIASPVQILTGGAPPPASLLEEI-ELLGFHVTHAYGLTEA---TGPALVCEWQSSW 346
E K +A +++G A P E I G V YG+TE T E ++
Sbjct: 266 ELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGT 325
Query: 347 NQLPKPD-QAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLK 405
+P P + +L G I L DG+++GEI +RG ++ YL
Sbjct: 326 VGVPLPGVELRLVEEDGTPIAAL----------------DGESVGEIQVRGPNLFTEYLN 369
Query: 406 NEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDR-SKDVIISGGENISSVELENVLFRHP 463
+AT+ +F ++G+FRTGD+ V PDGY+ I R + D+I SGG I + E+EN L HP
Sbjct: 370 RPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHP 429
Query: 464 RVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVI 523
V EAAV P P GE A+I +A + + L+ P+ V
Sbjct: 430 EVREAAVTGEPDPDLGERIVAWIVPADPAA----PPALGTLADHVAARLAPHKRPRVVRY 485
Query: 524 LPELPKTATGKIQKFQLRALAKN 546
L +P+ GKI K RAL ++
Sbjct: 486 LDAVPRNDMGKIMK---RALNRD 505
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 142/533 (26%), Positives = 227/533 (42%), Gaps = 52/533 (9%)
Query: 19 FLKRAAAVYGNRTSIIY--EGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPA 76
L+RAA + ++ G R + R + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVED 136
+ A+ AV +N RL + +A +++ E + + + R+ F
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE-----MTAAVIAVGRQVADAIF--- 118
Query: 137 RDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTS 196
+ +G R+I + D+ +R GE Y + DP+ P + P + YTSGTT
Sbjct: 119 QSGSGARIIFLGDL-----VRDGE-PYSYGPPIEDPQREPAQ------PAFIFYTSGTTG 166
Query: 197 APKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG--GTN 252
PK + R A L S +G G V L +P++H G+ F VAA GT
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVAALALDGTY 225
Query: 253 VCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPP 310
V + D + + Q +VT + P + L A ++ S + GA P
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 311 ASLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLA 369
++LE + + L + YG TEA + + ++ P R G +
Sbjct: 286 DAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV---- 341
Query: 370 DVDVKNLDTMSSVPRDGKTMGEIVLRGS-SIMKGYLKNEEATSQSFKNGWFRTGDVGVIH 428
D V N + GE+++ S S GYL +AT++ ++GW+RT DV V
Sbjct: 342 DEIVANGEE-----------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390
Query: 429 PDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISV 488
P+G + I R D+IISGGENI E+E VL P V E V+ + +WG+S A +
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450
Query: 489 KTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQL 540
+ D ++ ++CR + L+ F PK+ IL +LPK A K+ + QL
Sbjct: 451 RLGETLSADALD-----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/533 (26%), Positives = 227/533 (42%), Gaps = 52/533 (9%)
Query: 19 FLKRAAAVYGNRTSIIY--EGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPA 76
L+RAA + ++ G R + R + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVED 136
+ A+ AV +N RL + +A +++ E + + + R+ F
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE-----MTAAVIAVGRQVADAIF--- 118
Query: 137 RDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTS 196
+ +G R+I + D+ +R GE Y + DP+ P + P + YTSGTT
Sbjct: 119 QSGSGARIIFLGDL-----VRDGE-PYSYGPPIEDPQREPAQ------PAFIFYTSGTTG 166
Query: 197 APKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG--GTN 252
PK + R A L S +G G V L +P++H G+ F VAA GT
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVAALALDGTY 225
Query: 253 VCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPP 310
V + D + + Q +VT + P + L A ++ S + GA P
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 311 ASLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLA 369
++LE + + L + YG TEA + + ++ P R G +
Sbjct: 286 DAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV---- 341
Query: 370 DVDVKNLDTMSSVPRDGKTMGEIVLRGS-SIMKGYLKNEEATSQSFKNGWFRTGDVGVIH 428
D V N + GE+++ S S GYL +AT++ ++GW+RT DV V
Sbjct: 342 DEIVANGEE-----------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390
Query: 429 PDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISV 488
P+G + I R D+IISGGENI E+E VL P V E V+ + +WG+S A +
Sbjct: 391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450
Query: 489 KTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQL 540
+ D ++ ++CR + L+ F PK+ IL +LPK A K+ + QL
Sbjct: 451 RLGETLSADALD-----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 142/533 (26%), Positives = 227/533 (42%), Gaps = 52/533 (9%)
Query: 19 FLKRAAAVYGNRTSIIY--EGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPA 76
L+RAA + ++ G R + R + V+V+APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVED 136
+ A+ AV +N RL + +A +++ E + + + R+ F
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGE-----MTAAVIAVGRQVADAIF--- 118
Query: 137 RDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTS 196
+ +G R+I + D+ +R GE Y + DP+ P + P + YTSGTT
Sbjct: 119 QSGSGARIIFLGDL-----VRDGE-PYSYGPPIEDPQREPAQ------PAFIFYTSGTTG 166
Query: 197 APKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG--GTN 252
PK + R A L S +G G V L +P++H G+ F VAA GT
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF-FAVLVAALALDGTY 225
Query: 253 VCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPP 310
V + D + + Q +VT + P + L A ++ S + GA P
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285
Query: 311 ASLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLA 369
++LE + + L + YG TEA + + ++ P R G +
Sbjct: 286 DAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGV---- 341
Query: 370 DVDVKNLDTMSSVPRDGKTMGEIVLRGS-SIMKGYLKNEEATSQSFKNGWFRTGDVGVIH 428
D V N + GE+++ S S GYL +AT++ ++GW+RT DV V
Sbjct: 342 DEIVANGEE-----------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390
Query: 429 PDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISV 488
P+G + I R D+IISGGENI E+E VL P V E V+ + +WG+S A +
Sbjct: 391 PEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVP 450
Query: 489 KTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQL 540
+ D ++ ++CR + L+ F PK+ IL +LPK A K+ + QL
Sbjct: 451 RLGETLSADALD-----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 142/532 (26%), Positives = 223/532 (41%), Gaps = 52/532 (9%)
Query: 20 LKRAAAVYGNRTSIIY--EGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPAM 77
L+RAA + ++ G R + R + V+V+APN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 78 YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDR 137
A+ AV +N RL + +A +++ E + + R+ F +
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXT-----AAVIAVGRQVADAIF---Q 119
Query: 138 DAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSA 197
+G R+I + D+ +R GE Y + DP+ P + P + YTSGTT
Sbjct: 120 SGSGARIIFLGDL-----VRDGE-PYSYGPPIEDPQREPAQ------PAFIFYTSGTTGL 167
Query: 198 PKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG--GTNV 253
PK + R A L S +G G V L P++H G+ F VAA GT V
Sbjct: 168 PKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGF-FAVLVAALALDGTYV 226
Query: 254 CLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPPA 311
+ D + + Q +VT + P + L A ++ S + GA P
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATXPD 286
Query: 312 SLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLAD 370
++LE + + L + YG TEA + ++ P R G + D
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRIGGGV----D 342
Query: 371 VDVKNLDTMSSVPRDGKTMGEIVLRGS-SIMKGYLKNEEATSQSFKNGWFRTGDVGVIHP 429
V N + GE+++ S S GYL +AT++ ++GW+RT DV V P
Sbjct: 343 EIVANGEE-----------GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391
Query: 430 DGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVK 489
+G + I R D IISGGENI E+E VL P V E V+ + +WG+S A + +
Sbjct: 392 EGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPR 451
Query: 490 TNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQL 540
D ++ ++CR + L+ F PK+ IL +LPK A K+ + QL
Sbjct: 452 LGETLSADALD-----TFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQL 498
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/367 (29%), Positives = 173/367 (47%), Gaps = 36/367 (9%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVA--A 247
YTSGTT KG SH ++L+L+ W V + +LP++H +G V A
Sbjct: 162 YTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221
Query: 248 RGGTNVCLRNTTAYDMYRNIS-QHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGG 306
RG + +D + + R T + P + LLQ+ P KE ++ G
Sbjct: 222 RGSXIFLPK----FDPDKILDLXARATVLXGVPTFYTRLLQS-PRLTKETTGHXRLFISG 276
Query: 307 APPPASLLEEIEL-----LGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQ 361
+ P LL + G V YG TE ++ N D ++
Sbjct: 277 SAP---LLADTHREWSAKTGHAVLERYGXTE-----------TNXNTSNPYDGDRVPGAV 322
Query: 362 GISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKN-GWFR 420
G ++ ++ V + +T +PR +G I ++G ++ KGY + E T F++ G+F
Sbjct: 323 GPALPGVS-ARVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFI 379
Query: 421 TGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGE 480
TGD+G I GY+ I R KD++I+GG N+ E+E+ + P V+E+AV+ +PH +GE
Sbjct: 380 TGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGE 439
Query: 481 SPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQL 540
A + G T ++EA +L L++F PKKV+ + +LP+ GK+QK L
Sbjct: 440 GVTAVV---VRDKGAT--IDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVL 494
Query: 541 RALAKNF 547
R K+
Sbjct: 495 RETYKDI 501
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 143/539 (26%), Positives = 245/539 (45%), Gaps = 58/539 (10%)
Query: 19 FLKRAAAVYGNRTSIIYEGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPAMY 78
L+ AA YG+R +I +++ + R + + V V PNI +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 EMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRD 138
E+ FA+ RL A V ++ H +++ + C++ + A Y + D
Sbjct: 90 EVIFAL-----------FRLGALPVFALPSHRSSEITYF-CEFAEAA-----AYIIPDAY 132
Query: 139 AAGPRVILIDDIDS--PTG---IRFGEFEYEQFVQMGD----PRFLPEEIHDEWDPITLN 189
+ L + S PT I GE E+F+ + D P LPE D L
Sbjct: 133 SGFDYRSLARQVQSKLPTLKNIIVAGE--AEEFLPLEDLHTEPVKLPEV--KSSDVAFLQ 188
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTF--TWGV 245
+ G+T K + +H Y+ +L S+ + W + + VYL +LPM H + GV
Sbjct: 189 LSGGSTGLSKLIPRTHDD-YIYSLKRSVEVCW-LDHSTVYLAALPMAHNYPLSSPGVLGV 246
Query: 246 AARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTG 305
GG V + + D + I + +VT P + + + A R +++S + G
Sbjct: 247 LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVG 306
Query: 306 GAPPPASLLEEIE-LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGIS 364
GA A ++ + G + +G+ E LV ++ +L P++ + QG
Sbjct: 307 GAKFSAEAARRVKAVFGCTLQQVFGMAEG----LV-----NYTRLDDPEEIIVNT-QGKP 356
Query: 365 ILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTGD 423
+ + V D + G+T G ++ RG ++GY K EE + SF ++G++RTGD
Sbjct: 357 MSPYDESRV--WDDHDRDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD 413
Query: 424 VGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483
+ + DGY+ ++ R+KD I GGE +++ E+EN L HP V +AA+V+MP GE C
Sbjct: 414 IVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSC 473
Query: 484 AFISVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
FI + + A K A++ ++ RE L+ + +P +V + P+T GK+ K LR
Sbjct: 474 VFI-IPRDEAPKA-----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 143/547 (26%), Positives = 221/547 (40%), Gaps = 65/547 (11%)
Query: 23 AAAVYGNRTSIIYEGARF--------NWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNI 74
AA +G +T+II +F N+L+ + + K V V PN
Sbjct: 28 AAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS 87
Query: 75 PAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFV 134
+A+ A IN + + IL SEA V + + L+ V
Sbjct: 88 IDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYENFKPVLEKTGV 147
Query: 135 EDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGT 194
E G V + ++ G F +++ E D + YT GT
Sbjct: 148 ERVFVVGGEVNSLSEV----------------XDSGSEDFENVKVNPEEDVALIPYTGGT 191
Query: 195 TSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVC 254
T PKGV +H + L L + + + P FH + G V
Sbjct: 192 TGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVV 251
Query: 255 LRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIA-SPVQILTGGAPPPA-S 312
+ NI +++ T P N+L+ K S +++ GA P A +
Sbjct: 252 XGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPA 311
Query: 313 LLEEIELLG--------FHVTHAYGLTEA-----TGPALVCEWQSSWNQLPKPDQAKLKA 359
L+E++ L +G TEA T P L + +S+ +P D
Sbjct: 312 LVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLD-KSTTQGVPXSD------ 364
Query: 360 RQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF----- 414
I + ++ D + L S GEIV+RG +I KGY K E+ + +
Sbjct: 365 ---IELKVISLEDGRELGVGES--------GEIVIRGPNIFKGYWKREKENQECWWYDEK 413
Query: 415 KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMP 474
+FRTGDVG I +G+L +DR K+VI G I+ ELE +L +H V + AV+ P
Sbjct: 414 GRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKP 473
Query: 475 HPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGK 534
+ GE P AFI +K GK D E DI+ + RE +S + ++V + ELP+TA+GK
Sbjct: 474 DEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRVREVEFVEELPRTASGK 530
Query: 535 IQKFQLR 541
+ + LR
Sbjct: 531 LLRRLLR 537
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 27/358 (7%)
Query: 191 TSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF--TWGVAAR 248
+ GTT PK + +H Y S + + YL ++P H + + GV
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLA 251
Query: 249 GGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQA--KPEERKEIASPVQILTGG 306
GGT V + +A + I +H+V P ++ LQA + E R ++AS + GG
Sbjct: 252 GGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGG 311
Query: 307 APPPASLLEEIEL-LGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISI 365
A A+L I +G + +G+ E LV ++ +L + K+ QG +
Sbjct: 312 ARLSATLAARIPAEIGCQLQQVFGMAEG----LV-----NYTRLDDSAE-KIIHTQGYPM 361
Query: 366 LTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFK-NGWFRTGDV 424
+V V + + P +G ++ RG +GY K+ + + +F NG++ +GD+
Sbjct: 362 CPDDEVWVADAE---GNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDL 418
Query: 425 GVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCA 484
I P+GY+ ++ R KD I GGE I++ E+EN+L RHP V+ AA+V+M GE CA
Sbjct: 419 ISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCA 478
Query: 485 FISVKTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQLR 541
++ VK + + + + RE ++ F +P +V + LP TA GK+ K QLR
Sbjct: 479 YLVVK-------EPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLR 529
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 133/486 (27%), Positives = 216/486 (44%), Gaps = 41/486 (8%)
Query: 66 VVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLA 125
V+ + P+ P A++ N +A + S AK+ Y +
Sbjct: 76 VIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKV 135
Query: 126 REALKLYFVEDRDAAGPRVILIDDIDSPTG-IRFGEFEYEQFVQMGDPRFLPEEIHDEWD 184
++ F + D +V+ +D +P G + F E + D P+ D
Sbjct: 136 KD-----FARESDV---KVMCVDS--APDGCLHFSE------LTQADENEAPQVDISPDD 179
Query: 185 PITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILG----WEMGSAPVYLWSLPMFHCNGWT 240
+ L Y+SGTT PKGV+ +H+G S + G S V L LPMFH
Sbjct: 180 VVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239
Query: 241 FTWGVAARGGTNVCLRNTTAY-DMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASP 299
R G + + + I +++V+ P V + ++ ++ +++S
Sbjct: 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSL 299
Query: 300 VQILTGGAPPPASLLEEI--ELLGFHVTHAYGLTEATGPAL-VCEWQSSWNQLPKPDQAK 356
I +GGAP L + + + + YG+TEA GP L +C + KP
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA-GPVLAMCLAFAKEPFDIKPGACG 358
Query: 357 LKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-K 415
R A++ + + +T +S+PR+ GEI +RG IMKGYL + EATS++ K
Sbjct: 359 TVVRN-------AEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 416 NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPH 475
GW TGD+G I D L I DR K++I G ++ ELE +L HP + +AAVV +
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469
Query: 476 PQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKI 535
GE P AF+ VK+ + T+D +I Y + + + K+V + +PK +GKI
Sbjct: 470 EDAGEVPVAFV-VKSEKSQATED----EIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKI 524
Query: 536 QKFQLR 541
+ L+
Sbjct: 525 LRKNLK 530
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 173/386 (44%), Gaps = 44/386 (11%)
Query: 174 FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWS 230
F+PE + + +SG+T PKGV HR + I G ++ L
Sbjct: 186 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSV 245
Query: 231 LPMFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKP 290
+P H G T G G V + R++ +++ P +F+ L ++
Sbjct: 246 VPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTL 305
Query: 291 EERKEIASPVQILTGGAPPPASLLEEIELLGFH---VTHAYGLTEATGPALVCEWQSSWN 347
++ ++++ +I +GGAP + E + FH + YGLTE T L+
Sbjct: 306 IDKYDLSNLHEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETTSAILIT------- 357
Query: 348 QLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG-----EIVLRGSSIMKG 402
PK D K ++ + V +LDT GKT+G E+ +RG IM G
Sbjct: 358 --PKGDD---KPGAVGKVVPFFEAKVVDLDT-------GKTLGVNQRGELSVRGPMIMSG 405
Query: 403 YLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
Y+ N EAT+ K+GW +GD+ D + I DR K +I G ++ ELE++L +
Sbjct: 406 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQ 465
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKK- 520
HP + +A V +P GE P A + ++ GKT + E +I+ Y S+ KK
Sbjct: 466 HPNIFDAGVAGLPDDDAGELPAAVVVLE---HGKT--MTEKEIVDYVA---SQVTTAKKL 517
Query: 521 ---VVILPELPKTATGKIQKFQLRAL 543
VV + E+PK TGK+ ++R +
Sbjct: 518 RGGVVFVDEVPKGLTGKLDARKIREI 543
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 167/364 (45%), Gaps = 30/364 (8%)
Query: 191 TSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAA 247
+SG+T PKGV +H + I G ++ L +P H G T G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259
Query: 248 RGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGA 307
G V L + + ++ T++ P +F IL +++ + ++++ V+I +GGA
Sbjct: 260 CGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 308 PPPASLLEEI----ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGI 363
P + E + L G V YGLTE T ++ P+ D K
Sbjct: 320 PLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIIT---------PEGDD---KPGASG 365
Query: 364 SILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTG 422
++ L V +LDT S+ + + GE+ ++G +MKGY+ N EAT + + GW TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 423 DVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482
D+G + + I DR K +I G + ELE+VL +HP + +A V +P P GE P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 483 CAFISVKTNSAGKTDDVNEADILSYCRENLSRFM-VPKKVVILPELPKTATGKIQKFQLR 541
A + +++ ++ E +++ Y +S + V + E+PK TGKI +R
Sbjct: 484 GAVVVLESGK-----NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538
Query: 542 ALAK 545
+ K
Sbjct: 539 EILK 542
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 166/365 (45%), Gaps = 30/365 (8%)
Query: 191 TSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAA 247
+SG+T PKGV +H + I G ++ L +P H G T G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259
Query: 248 RGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGA 307
G V L + + ++ T + P +F IL +++ + ++++ V+I +GGA
Sbjct: 260 CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 308 PPPASLLEEI----ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGI 363
P + E + L G V YGLTE T ++ P+ D K
Sbjct: 320 PLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIIT---------PEGDD---KPGASG 365
Query: 364 SILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTG 422
++ L V +LDT S+ + + GE+ ++G +MKGY+ N EAT + + GW TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 423 DVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482
D+G + + I DR K +I G + ELE+VL +HP + +A V +P P GE P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 483 CAFISVKTNSAGKTDDVNEADILSYCRENLSRFM-VPKKVVILPELPKTATGKIQKFQLR 541
A + +++ ++ E +++ Y +S + V + E+PK TGKI +R
Sbjct: 484 GAVVVLESGK-----NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538
Query: 542 ALAKN 546
+ K
Sbjct: 539 EILKK 543
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 125 bits (314), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 166/365 (45%), Gaps = 30/365 (8%)
Query: 191 TSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAA 247
+SG+T PKGV +H + I G ++ L +P H G T G
Sbjct: 200 SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI 259
Query: 248 RGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGA 307
G V L + + ++ T + P +F IL +++ + ++++ V+I +GGA
Sbjct: 260 CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 308 PPPASLLEEI----ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGI 363
P + E + L G V YGLTE T ++ P+ D K
Sbjct: 320 PLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIIT---------PEGDD---KPGASG 365
Query: 364 SILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTG 422
++ L V +LDT S+ + + GE+ ++G +MKGY+ N EAT + + GW TG
Sbjct: 366 KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423
Query: 423 DVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482
D+G + + I DR K +I G + ELE+VL +HP + +A V +P P GE P
Sbjct: 424 DIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELP 483
Query: 483 CAFISVKTNSAGKTDDVNEADILSYCRENLSRFM-VPKKVVILPELPKTATGKIQKFQLR 541
A + +++ ++ E +++ Y +S + V + E+PK TGKI +R
Sbjct: 484 GAVVVLESGK-----NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538
Query: 542 ALAKN 546
+ K
Sbjct: 539 EILKK 543
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 173/386 (44%), Gaps = 44/386 (11%)
Query: 174 FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWS 230
F+PE + + +SG+T PKGV HR A + I G ++ L
Sbjct: 181 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 240
Query: 231 LPMFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKP 290
+P H G T G G V + R++ +++ P +F+ ++
Sbjct: 241 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 300
Query: 291 EERKEIASPVQILTGGAPPPASLLEEIELLGFH---VTHAYGLTEATGPALVCEWQSSWN 347
++ ++++ +I +GGAP + E + FH + YGLTE T L+
Sbjct: 301 IDKYDLSNLHEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETTSAILIT------- 352
Query: 348 QLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG-----EIVLRGSSIMKG 402
P+ D K ++ + V +LDT GKT+G E+ +RG IM G
Sbjct: 353 --PEGDD---KPGAVGKVVPFFEAKVVDLDT-------GKTLGVNQRGELCVRGPMIMSG 400
Query: 403 YLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
Y+ N EAT+ K+GW +GD+ D + I DR K +I G ++ ELE++L +
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKK- 520
HP + +A V +P GE P A + ++ GKT + E +I+ Y S+ KK
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLE---HGKT--MTEKEIVDYVA---SQVTTAKKL 512
Query: 521 ---VVILPELPKTATGKIQKFQLRAL 543
VV + E+PK TGK+ ++R +
Sbjct: 513 RGGVVFVDEVPKGLTGKLDARKIREI 538
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 173/386 (44%), Gaps = 44/386 (11%)
Query: 174 FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWS 230
F+PE + + +SG+T PKGV HR A + I G ++ L
Sbjct: 181 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 240
Query: 231 LPMFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKP 290
+P H G T G G V + R++ +++ P +F+ ++
Sbjct: 241 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 300
Query: 291 EERKEIASPVQILTGGAPPPASLLEEIELLGFH---VTHAYGLTEATGPALVCEWQSSWN 347
++ ++++ +I +GGAP + E + FH + YGLTE T L+
Sbjct: 301 IDKYDLSNLHEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETTSAILIT------- 352
Query: 348 QLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG-----EIVLRGSSIMKG 402
P+ D K ++ + V +LDT GKT+G E+ +RG IM G
Sbjct: 353 --PEGDD---KPGAVGKVVPFFEAKVVDLDT-------GKTLGVNQRGELCVRGPMIMSG 400
Query: 403 YLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
Y+ N EAT+ K+GW +GD+ D + I DR K +I G ++ ELE++L +
Sbjct: 401 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKK- 520
HP + +A V +P GE P A + ++ GKT + E +I+ Y S+ KK
Sbjct: 461 HPNIFDAGVAGLPDDDAGELPAAVVVLE---HGKT--MTEKEIVDYVA---SQVTTAKKL 512
Query: 521 ---VVILPELPKTATGKIQKFQLRAL 543
VV + E+PK TGK+ ++R +
Sbjct: 513 RGGVVFVDEVPKGLTGKLDARKIREI 538
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 173/386 (44%), Gaps = 44/386 (11%)
Query: 174 FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWS 230
F+PE + + +SG+T PKGV HR A + I G ++ L
Sbjct: 186 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 245
Query: 231 LPMFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKP 290
+P H G T G G V + R++ +++ P +F+ ++
Sbjct: 246 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 305
Query: 291 EERKEIASPVQILTGGAPPPASLLEEIELLGFH---VTHAYGLTEATGPALVCEWQSSWN 347
++ ++++ +I +GGAP + E + FH + YGLTE T L+
Sbjct: 306 IDKYDLSNLHEIASGGAPLSKEVGEAVAKR-FHLPGIRQGYGLTETTSAILIT------- 357
Query: 348 QLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG-----EIVLRGSSIMKG 402
P+ D K ++ + V +LDT GKT+G E+ +RG IM G
Sbjct: 358 --PEGDD---KPGAVGKVVPFFEAKVVDLDT-------GKTLGVNQRGELCVRGPMIMSG 405
Query: 403 YLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
Y+ N EAT+ K+GW +GD+ D + I DR K +I G ++ ELE++L +
Sbjct: 406 YVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 465
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKK- 520
HP + +A V +P GE P A + ++ GKT + E +I+ Y S+ KK
Sbjct: 466 HPNIFDAGVAGLPDDDAGELPAAVVVLE---HGKT--MTEKEIVDYVA---SQVTTAKKL 517
Query: 521 ---VVILPELPKTATGKIQKFQLRAL 543
VV + E+PK TGK+ ++R +
Sbjct: 518 RGGVVFVDEVPKGLTGKLDARKIREI 543
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/384 (25%), Positives = 173/384 (45%), Gaps = 39/384 (10%)
Query: 174 FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGA---YLSTLSLILGWEMGSAPVYLWS 230
++P+ E + +SG+T PKGV +H+ + + G ++ L
Sbjct: 215 YIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTV 274
Query: 231 LPMFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKP 290
+P H G T G G V + R++ +++ P +F+ ++
Sbjct: 275 IPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 334
Query: 291 EERKEIASPVQILTGGAPPPASLLEEI----ELLGFHVTHAYGLTEATGPALVCEWQSSW 346
++ ++++ +I +GGAP + E + +L G + YGLTE T ++ +
Sbjct: 335 VDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAIII----TPR 388
Query: 347 NQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG-----EIVLRGSSIMK 401
+ KP ++ + +LDT GKT+G E+ ++G IMK
Sbjct: 389 GRDDKPGACG-------KVVPFFSAKIVDLDT-------GKTLGVNQRGELCVKGPMIMK 434
Query: 402 GYLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLF 460
GY+ N EATS K+GW +GD+ DGY I DR K +I G + ELE++L
Sbjct: 435 GYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILL 494
Query: 461 RHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLS-RFMVPK 519
+HP + +A V +P P GE P A + ++ GKT + E +++ Y ++ +
Sbjct: 495 QHPFIFDAGVAGIPDPDAGELPAAVVVLE---EGKT--MTEQEVMDYVAGQVTASKRLRG 549
Query: 520 KVVILPELPKTATGKIQKFQLRAL 543
V + E+PK TGKI ++R +
Sbjct: 550 GVKFVDEVPKGLTGKIDARKIREI 573
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 141/539 (26%), Positives = 239/539 (44%), Gaps = 58/539 (10%)
Query: 19 FLKRAAAVYGNRTSIIYEGARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPNIPAMY 78
L+ AA YG+R +I +++ + R + + V V PNI +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 EMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRD 138
E+ FA+ RL A V ++ H +++ + C++ + A Y + D
Sbjct: 90 EVIFAL-----------FRLGALPVFALPSHRSSEITYF-CEFAEAA-----AYIIPDAY 132
Query: 139 AAGPRVILIDDIDS--PTG---IRFGEFEYEQFVQMGD----PRFLPEEIHDEWDPITLN 189
+ L + S PT I GE E+F+ + D P LPE D L
Sbjct: 133 SGFDYRSLARQVQSKLPTLKNIIVAGE--AEEFLPLEDLHTEPVKLPEVKSS--DVAFLQ 188
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTL--SLILGWEMGSAPVYLWSLPMFHCNGWTF--TWGV 245
+ G+T K + +H Y+ +L S+ + W + + VYL +LP H + GV
Sbjct: 189 LSGGSTGLSKLIPRTHDD-YIYSLKRSVEVCW-LDHSTVYLAALPXAHNYPLSSPGVLGV 246
Query: 246 AARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTG 305
GG V + + D + I + +VT P + + A R +++S + G
Sbjct: 247 LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVG 306
Query: 306 GAPPPASLLEEIE-LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGIS 364
GA A ++ + G + +G E LV ++ +L P++ + QG
Sbjct: 307 GAKFSAEAARRVKAVFGCTLQQVFGXAEG----LV-----NYTRLDDPEEIIVNT-QGKP 356
Query: 365 ILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTGD 423
+ V D + G+T G ++ RG ++GY K EE + SF ++G++RTGD
Sbjct: 357 XSPYDESRV--WDDHDRDVKPGET-GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGD 413
Query: 424 VGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483
+ + DGY+ ++ R+KD I GGE +++ E+EN L HP V +AA V+ P GE C
Sbjct: 414 IVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSC 473
Query: 484 AFISVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
FI + + A K A++ ++ RE L+ + +P +V + P+T GK+ K LR
Sbjct: 474 VFI-IPRDEAPKA-----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 162/358 (45%), Gaps = 30/358 (8%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249
YTSGTT G + SH ++L+L+ W V + +LP++H +G V
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221
Query: 250 GTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPP 309
++ D ++ R T + P + LLQ+ P E +++ G+ P
Sbjct: 222 RGSMIFLPXFDPDXILDL-MARATVLMGVPTFYTRLLQS-PRLTXETTGHMRLFISGSAP 279
Query: 310 PASLLEEIE-----LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGIS 364
LL + G V YG+TE ++ N D ++ G +
Sbjct: 280 ---LLADTHREWSAXTGHAVLERYGMTE-----------TNMNTSNPYDGDRVPGAVGPA 325
Query: 365 ILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKN-GWFRTGD 423
+ ++ V + +T +PR +G I + G ++ GY + E T F++ G+F TGD
Sbjct: 326 LPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 424 VGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483
+G I GY+ I R D++I+GG N+ E+E+ + P V+E+AV+ +PH +GE
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVT 442
Query: 484 AFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
AF+ + A +EA +L L+ F +P V+ + +LP+ G +Q LR
Sbjct: 443 AFVVLXREFA-----PSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 164/358 (45%), Gaps = 27/358 (7%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249
YTSGTT G + SH ++L+L+ W V + +LP++H +G V
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221
Query: 250 GTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPP 309
++ D ++ R T + P + LLQ+ P E +++ G+ P
Sbjct: 222 RGSMIFLPXFDPDXILDL-MARATVLMGVPTFYTRLLQS-PRLTXETTGHMRLFISGSAP 279
Query: 310 PASLLEEIE-----LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGIS 364
LL + G V YG+TE ++ N D ++ G +
Sbjct: 280 ---LLADTHREWSAXTGHAVLERYGMTE-----------TNMNTSNPYDGDRVPGAVGPA 325
Query: 365 ILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKN-GWFRTGD 423
+ ++ V + +T +PR +G I + G ++ GY + E T F++ G+F TGD
Sbjct: 326 LPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 424 VGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483
+G I GY+ I R D++I+GG N+ E+E+ + P V+E+AV+ +PH +GE
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVT 442
Query: 484 AFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
AF+ + A ++ ++ ++ + L+ F +P V+ + +LP+ G +Q LR
Sbjct: 443 AFVVLXREFA--PSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 498
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 162/358 (45%), Gaps = 30/358 (8%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249
YTSGTT G + SH ++L+L+ W V + +LP++H +G V
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221
Query: 250 GTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPP 309
++ D ++ R T + P + LLQ+ P E +++ G+ P
Sbjct: 222 RGSMIFLPXFDPDXILDL-MARATVLMGVPTFYTRLLQS-PRLTXETTGHMRLFISGSAP 279
Query: 310 PASLLEEIE-----LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGIS 364
LL + G V YG+TE ++ N D ++ G +
Sbjct: 280 ---LLADTHREWSAXTGHAVLERYGMTE-----------TNMNTSNPYDGDRVPGAVGPA 325
Query: 365 ILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKN-GWFRTGD 423
+ ++ V + +T +PR +G I + G ++ GY + E T F++ G+F TGD
Sbjct: 326 LPGVS-ARVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 424 VGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483
+G I GY+ I R D++I+GG N+ E+E+ + P V+E+AV+ +PH +GE
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVT 442
Query: 484 AFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
A V G T ++EA +L L+ F +P V+ + +LP+ G +Q LR
Sbjct: 443 A---VVVRDXGAT--IDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLR 495
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 167/358 (46%), Gaps = 24/358 (6%)
Query: 191 TSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF--TWGVAAR 248
+ G+T PK + +H S + + S L +LP H + GV
Sbjct: 199 SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258
Query: 249 GGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAP 308
GG V N + + I +H+V P + L+ + + +I S + GGA
Sbjct: 259 GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318
Query: 309 PPASLLEEI-ELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILT 367
P SL ++ E+L + +G+ E ++ +L D+ ++ QG I +
Sbjct: 319 FPESLARQVPEVLNCKLQQVFGMAEGL---------VNYTRLDDSDE-QIFTTQGRPISS 368
Query: 368 LADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTGDVGV 426
D ++K +D +G+ +G + RG GY ++ E SQ F ++ ++ +GD+
Sbjct: 369 --DDEIKIVDEQYREVPEGE-IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQ 425
Query: 427 IHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFI 486
PDG L + R KD I GGE I+S E+E ++ HP V+ AA+VA+ Q+GE CAFI
Sbjct: 426 RTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFI 485
Query: 487 SVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLRAL 543
+ ++ + + E ++++ +P ++ ++ LP TA GK+ K QLR++
Sbjct: 486 ------VSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSI 537
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 119/256 (46%), Gaps = 18/256 (7%)
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTW 243
D + + YTSGTT PKGVV++H + + S ++ L LPMFH T
Sbjct: 157 DNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI 216
Query: 244 GVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASP--VQ 301
A RG T + + A ++ I + RV P + N + Q E E+ +P
Sbjct: 217 FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP--EFAELDAPDFRY 274
Query: 302 ILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQ 361
+TGGAP P +L++ V Y LTE+ G + + + + +A +
Sbjct: 275 FITGGAPMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATM---- 330
Query: 362 GISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRT 421
DV V+ D + + G+ GE+V++ ++K Y EAT +F NGWFRT
Sbjct: 331 ------FTDVAVRGDDGV--IREHGE--GEVVIKSDILLKEYWNRPEATRDAFDNGWFRT 380
Query: 422 GDVGVIHPDGYLEIKD 437
GD+G I +GYL IKD
Sbjct: 381 GDIGEIDDEGYLYIKD 396
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 162/380 (42%), Gaps = 35/380 (9%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFT------- 242
+TSGT+ PK +S+ L + GW A +W++ GW
Sbjct: 213 FTSGTSGLPKMAEHSYSSLGLKA-KMDAGWTGLQASDIMWTI---SDTGWILNILCSLME 268
Query: 243 -WGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQ 301
W + A ++ L + + +S + + M APIV+ +LLQ K
Sbjct: 269 PWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNC 327
Query: 302 ILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQ 361
+ G + P +L G + +YG TE +V + +K +
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK--------------TMKIKP 373
Query: 362 GISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS-----SIMKGYLKNEEATSQSFKN 416
G + DV+ +D +V G T G+I +R I GY+ N + T+ + +
Sbjct: 374 GYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG 432
Query: 417 GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP 476
++ GD G+ DGY + R+ D+I S G I E+EN L HP V+E AV++ P P
Sbjct: 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDP 492
Query: 477 QWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQ 536
GE AF+ + + + ++ + + + + P+K+ + LPKT TGKIQ
Sbjct: 493 VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 537 KFQLRALAKNFAVSKDHNAQ 556
+ +LR K + +S AQ
Sbjct: 553 RAKLR--DKEWKMSGKARAQ 570
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 156/365 (42%), Gaps = 33/365 (9%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFT------- 242
+TSGT+ PK +S+ L + GW A +W++ GW
Sbjct: 213 FTSGTSGLPKMAEHSYSSLGLKA-KMDAGWTGLQASDIMWTI---SDTGWILNILCSLME 268
Query: 243 -WGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQ 301
W + A ++ L + + +S + + M APIV+ +LLQ K
Sbjct: 269 PWALGACTFVHL-LPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNC 327
Query: 302 ILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQ 361
+ G + P +L G + +YG TE +V + +K +
Sbjct: 328 VTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK--------------TMKIKP 373
Query: 362 GISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS-----SIMKGYLKNEEATSQSFKN 416
G + DV+ +D +V G T G+I +R I GY+ N + T+ + +
Sbjct: 374 GYMGTAASCYDVQIIDDKGNVLPPG-TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRG 432
Query: 417 GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP 476
++ GD G+ DGY + R+ D+I S G I E+EN L HP V+E AV++ P P
Sbjct: 433 DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDP 492
Query: 477 QWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQ 536
GE AF+ + + + ++ + + + + P+K+ + LPKT TGKIQ
Sbjct: 493 VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 537 KFQLR 541
+ +LR
Sbjct: 553 RAKLR 557
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 169/366 (46%), Gaps = 42/366 (11%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLST---LSLILGWEMGSAPVYLWSLPMFHC----NGWTFT 242
Y+SG+T PKG V++H Y + ILG + V + +F NG TF
Sbjct: 190 YSSGSTGKPKGTVHTHANLYWTAELYAKPILG--IAENDVVFSAAKLFFAYGLGNGLTFP 247
Query: 243 WGVAARGGTNVCL-RNTTAYDMYRNISQHRVTHMCCAPIVF-NILLQAKPEERKEIASPV 300
V G T + + TA ++ + +HR T P ++ N+L+ R ++A +
Sbjct: 248 LSV---GATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRI 304
Query: 301 QILTGGAPPPASLLEEIELLGFHVTHAYGLTEA-----TGPALVCEWQSSWNQLPKPDQA 355
G A P G + G TE + A E+ ++ +P
Sbjct: 305 CTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG---- 360
Query: 356 KLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFK 415
++++++ + +VP DG+ +G++ ++G S Y N E + +F
Sbjct: 361 -------------YEIELRD-EAGHAVP-DGE-VGDLYIKGPSAAVMYWNNREKSRATFL 404
Query: 416 NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPH 475
W R+GD P+G RS D++ G+ +S VE+E VL +H VLEAAVV + H
Sbjct: 405 GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDH 464
Query: 476 PQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKI 535
++ AF+ +K A ++ ++ ++ ++ L+ P+ +V + +LPKTATGKI
Sbjct: 465 GGLVKTR-AFVVLKREFA--PSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKI 521
Query: 536 QKFQLR 541
Q+F+LR
Sbjct: 522 QRFKLR 527
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 133/565 (23%), Positives = 232/565 (41%), Gaps = 67/565 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ R ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR-SIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPP--PASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQ 348
I S ++IL P P + + +G + P + WQ+
Sbjct: 371 AIEGTDRSSLRILGSAGEPINPEAWEWYWKKIG----------KEKCPVVDTWWQTETGG 420
Query: 349 L---PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SI 399
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 421 FMITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTL 477
Query: 400 MKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVL 459
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 460 FRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPK 519
HP++ EAAVV +PH G++ A++++ N + A++ ++ R+ + P
Sbjct: 537 VAHPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVRKEIGPLATPD 594
Query: 520 KVVILPELPKTATGKIQKFQLRALA 544
+ LPKT +GKI + LR +A
Sbjct: 595 VLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 133/563 (23%), Positives = 233/563 (41%), Gaps = 63/563 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ R ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGR-SIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQL- 349
I S ++IL S+ E I + + + + P + WQ+
Sbjct: 371 AIEGTDRSSLRIL-------GSVGEPINPEAWE-WYWKKIGKEKCPVVDTWWQTETGGFM 422
Query: 350 --PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SIMK 401
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 423 ITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLFG 479
Query: 402 GYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 480 DHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
HP++ EAAVV +PH G++ A++++ N + A++ ++ R+ + P +
Sbjct: 539 HPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVRKEIGPLATPDVL 596
Query: 522 VILPELPKTATGKIQKFQLRALA 544
LPKT +GKI + LR +A
Sbjct: 597 HWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 133/563 (23%), Positives = 233/563 (41%), Gaps = 63/563 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ R ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR-SIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQL- 349
I S ++IL S+ E I + + + + P + WQ+
Sbjct: 371 AIEGTDRSSLRIL-------GSVGEPINPEAWE-WYWKKIGKEKCPVVDTWWQTETGGFM 422
Query: 350 --PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SIMK 401
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 423 ITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLFG 479
Query: 402 GYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 480 DHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
HP++ EAAVV +PH G++ A++++ N + A++ ++ R+ + P +
Sbjct: 539 HPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVRKEIGPLATPDVL 596
Query: 522 VILPELPKTATGKIQKFQLRALA 544
LPKT +GKI + LR +A
Sbjct: 597 HWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 133/563 (23%), Positives = 233/563 (41%), Gaps = 63/563 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ A ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVR-AGASIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQL- 349
I S ++IL S+ E I + + + + P + WQ+
Sbjct: 371 AIEGTDRSSLRIL-------GSVGEPINPEAWE-WYWKKIGKEKCPVVDTWWQTETGGFM 422
Query: 350 --PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SIMK 401
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 423 ITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLFG 479
Query: 402 GYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 480 DHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
HP++ EAAVV +PH G++ A++++ N + A++ ++ R+ + P +
Sbjct: 539 HPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVRKEIGPLATPDVL 596
Query: 522 VILPELPKTATGKIQKFQLRALA 544
LPKT +GKI + LR +A
Sbjct: 597 HWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 132/563 (23%), Positives = 232/563 (41%), Gaps = 63/563 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ R ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR-SIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQL- 349
I S ++IL S+ E I + + + + P + WQ+
Sbjct: 371 AIEGTDRSSLRIL-------GSVGEPINPEAWE-WYWKKIGKEKCPVVDTWWQTETGGFM 422
Query: 350 --PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SIMK 401
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 423 ITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLFG 479
Query: 402 GYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 480 DHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
HP++ EAAVV +PH G++ A++++ N + A++ ++ R+ + P +
Sbjct: 539 HPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVRKEIGPLATPDVL 596
Query: 522 VILPELPKTATGKIQKFQLRALA 544
LPKT +G I + LR +A
Sbjct: 597 HWTDSLPKTRSGAIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 132/563 (23%), Positives = 232/563 (41%), Gaps = 63/563 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ R ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR-SIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQL- 349
I S ++IL S+ E I + + + + P + WQ+
Sbjct: 371 AIEGTDRSSLRIL-------GSVGEPINPEAWE-WYWKKIGKEKCPVVDTWWQTETGGFM 422
Query: 350 --PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SIMK 401
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 423 ITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLFG 479
Query: 402 GYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 480 DHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
HP++ EAAVV +PH G++ A++++ N + A++ ++ + + P +
Sbjct: 539 HPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVEKEIGPLATPDVL 596
Query: 522 VILPELPKTATGKIQKFQLRALA 544
LPKT +GKI + LR +A
Sbjct: 597 HWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 132/563 (23%), Positives = 232/563 (41%), Gaps = 63/563 (11%)
Query: 20 LKRAAAVYGNRTSIIYEG------ARFNWLQTYDRCXXXXXXXXXXNMPKHSVVSVLAPN 73
L R G+RT+II+EG ++ + + + K VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYF 133
+P A AV + I + VA + S +++ + V+ R ++ L
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGR-SIPLKK 200
Query: 134 VEDRDAAGPRVILID----------DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEW 183
D P V ++ DID G + + ++ P PE ++ E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSDIDWQEG---RDLWWRDLIEKASPEHQPEAMNAE- 256
Query: 184 DPITLNYTSGTTSAPKGVVYSHRGAYL----STLSLILGWEMGSAPVYLWSLPMFHCNGW 239
DP+ + YTSG+T PKGV+++ G YL +T + + G +Y + + G
Sbjct: 257 DPLFILYTSGSTGKPKGVLHT-TGGYLVYAATTFKYVFDYHPGD--IYWCTADVGWVTGH 313
Query: 240 TFT-WGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK 294
++ +G A G T + T M + + +H+V + AP L+ E K
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA---EGDK 370
Query: 295 EIA----SPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQL- 349
I S ++IL S+ E I + + + + P + WQ+
Sbjct: 371 AIEGTDRSSLRIL-------GSVGEPINPEAWE-WYWKKIGKEKCPVVDTWWQTETGGFM 422
Query: 350 --PKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS------SIMK 401
P P +LKA G + V +D P++G T G +V+ S ++
Sbjct: 423 ITPLPGAIELKA--GSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLFG 479
Query: 402 GYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
+ + E+ +FKN +F +GD DGY I R DV+ G + + E+E+ L
Sbjct: 480 DHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
HP++ EAAVV +PH G++ A++++ N + A++ ++ + + P +
Sbjct: 539 HPKIAEAAVVGIPHAIKGQAIYAYVTL--NHGEEPSPELYAEVRNWVAKEIGPLATPDVL 596
Query: 522 VILPELPKTATGKIQKFQLRALA 544
LPKT +GKI + LR +A
Sbjct: 597 HWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 130/561 (23%), Positives = 228/561 (40%), Gaps = 51/561 (9%)
Query: 20 LKRAAAVYGNRTSIIYEGAR--FNWLQTYDR-----CXXXXXXXXXXNMPKHSVVSVLAP 72
+ R A N+ +II+EG + TY C + K V+V P
Sbjct: 88 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMP 147
Query: 73 NIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLY 132
+P A+ A+ + + + ++ + ++KV + + +
Sbjct: 148 MVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKR 207
Query: 133 FVED--RDAAGPRVILI-DDIDSPTGIRFGEFEYEQFVQMGDPR-FLPEEIHDEWDPITL 188
V+D R+ G R +L+ ++P+ + + + + + P D DP+ L
Sbjct: 208 IVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFL 267
Query: 189 NYTSGTTSAPKGVVYSHRGAYLSTL-SLILGWEMGSAPVYLWSLPMFHCNGWTFT-WGVA 246
YTSG+T APKGV +S G L L ++ ++ V+ + + G T+ +G
Sbjct: 268 LYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327
Query: 247 ARGGTNVCLRNTTAYDMYRN----ISQHRVTHMCCAPIVFNILLQAKPE--ERKEIASPV 300
G + T AY Y I +H+VT AP +L +A E + S
Sbjct: 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLR 387
Query: 301 QILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQS-SWNQLPKPDQAKLK- 358
+ + G P A + E + G E P + WQ+ S + L P +
Sbjct: 388 CLGSVGEPIAAEVWE-------WYSEKIGKNEI--PIVDTYWQTESGSHLVTPLAGGVTP 438
Query: 359 ARQGISILTLADVDVKNLDTMSSVPRDGKTM------GEIVLRGS--SIMKGYLKNEEAT 410
+ G + +D LD P G+ + G + ++ + S + KN +
Sbjct: 439 MKPGSASFPFFGIDAVVLD-----PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRY 493
Query: 411 SQSFKN---GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLE 467
++ N G++ TGD DGY+ I R DV+ G +S+ E+E + P V E
Sbjct: 494 LDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAE 553
Query: 468 AAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNE-ADILSY----CRENLSRFMVPKKVV 522
AVV G++ AF+ +K S+ T +E DI + R+++ F PK ++
Sbjct: 554 CAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLII 613
Query: 523 ILPELPKTATGKIQKFQLRAL 543
++ +LPKT +GKI + LR +
Sbjct: 614 LVDDLPKTRSGKIMRRILRKI 634
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 125/287 (43%), Gaps = 22/287 (7%)
Query: 260 AYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIEL 319
A +M S++ VT C P ++ L++ ++ G P +E
Sbjct: 305 AKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364
Query: 320 LGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTM 379
G + +G TE W PKP K G I L D D + +
Sbjct: 365 TGIKLMEGFGQTETVVTIATFPWME-----PKPGSIG-KPTPGYKI-ELMDRDGRLCEVG 417
Query: 380 SSVPRDGKTMGEIVL-----RGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLE 434
GEIV+ + + Y K+ E T +++ +G++ TGD+ + DGYL
Sbjct: 418 EE--------GEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLW 469
Query: 435 IKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAG 494
R+ D+I + G + E+E+ L +HP VLE A+ +P P G+ A I V T
Sbjct: 470 FVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATI-VLTKDYT 528
Query: 495 KTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLR 541
+D + ++ + + + + P+ + +PELPKT +GKI++ ++R
Sbjct: 529 PSDSLKN-ELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIR 574
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 163/376 (43%), Gaps = 48/376 (12%)
Query: 181 DEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWT 240
D DP + YTSGTT PKG + +H A + L + + S S+ + + +T
Sbjct: 605 DPNDPAYIMYTSGTTGKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFT 662
Query: 241 FTWGVAARGGTNVCLRNT-TAYDMYRN---ISQHRVTHMCCAPIVFNILLQAKPEERKEI 296
F + + + + + T D R I Q V M +FN+L A + K +
Sbjct: 663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGL 722
Query: 297 ASPVQILTGG--APPPASLLEEIELLG-FHVTHAYGLTEATGPA---LVCEWQSSWNQLP 350
IL GG A P + + + ++G + + YG TE T A +V + S + LP
Sbjct: 723 RC---ILFGGERASVP-HVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLP 778
Query: 351 --KPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEE 408
KP +++ V L+ S + G +GE+ + G + KGY+ +
Sbjct: 779 IGKP---------------ISNASVYILNEQSQLQPFG-AVGELCISGMGVSKGYVNRAD 822
Query: 409 ATSQSF-----KNG--WFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461
T + F K G +RTGD+ PDG +E R D + G I E+E L
Sbjct: 823 LTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882
Query: 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
+P V +A VVA H S A++ +T + + D+ ++ ++ L +MVP+
Sbjct: 883 YPGVKDAVVVADRHESGDASINAYLVNRTQLSAE-------DVKAHLKKQLPAYMVPQTF 935
Query: 522 VILPELPKTATGKIQK 537
L ELP T GK+ K
Sbjct: 936 TFLDELPLTTNGKVNK 951
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 160/383 (41%), Gaps = 50/383 (13%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAP---VYLWSLPMFHCNGWTFTWGVA 246
YTSGTT PKG + H+G +S L + + + ++ F + W +
Sbjct: 189 YTSGTTGNPKGTMLEHKG--ISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALL 246
Query: 247 ARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQI 302
+ L++T ++ Y I+Q +T + P ++ PE I S +
Sbjct: 247 TGASLYIILKDTINDFVKFEQY--INQKEITVITLPP---TYVVHLDPER---ILSIQTL 298
Query: 303 LTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQG 362
+T G+ SL+ + + ++ +AYG TE T +C ++W + +
Sbjct: 299 ITAGSATSPSLVNKWKEKVTYI-NAYGPTETT----IC--ATTWVATKETIGHSVPIGAP 351
Query: 363 ISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWF--- 419
I + VD +NL + SV GE+ + G + +GY K E TSQ F + F
Sbjct: 352 IQNTQIYIVD-ENLQ-LKSVGE----AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Query: 420 ----RTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPH 475
+TGD DG +E R + + G + E+E++L +H + E AV H
Sbjct: 406 EKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSV--H 463
Query: 476 PQWGESP--CA-FISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTAT 532
E P CA F+S K + + + E L +M+P + L ++P T+
Sbjct: 464 KDHQEQPYLCAYFVSEK--------HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSN 515
Query: 533 GKIQKFQLRALAKNFAVSKDHNA 555
GKI + QL F + D+ A
Sbjct: 516 GKIDRKQLPEPDLTFGMRVDYEA 538
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 153/387 (39%), Gaps = 66/387 (17%)
Query: 184 DPITLNYTSGTTSAPKGVVYSHR---GAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWT 240
D + +TSG+T PKGV+ HR G YL G + V+L P+
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE----VFLQCSPVSWDAFGL 270
Query: 241 FTWGVAARGGTNVCL--RNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIAS 298
+G G V +N ++ +++H VT + + +FN L+ PE + +
Sbjct: 271 ELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVR- 329
Query: 299 PVQILTGGAPP------------PASLLEE----IELLGFHVTHAYGLTEATGPALVCEW 342
+TGG P PA L E +GF HA + +G AL
Sbjct: 330 --YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTAL---- 383
Query: 343 QSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKG 402
P L ++ + D D+K P +GE+ + G+ + G
Sbjct: 384 ---------PIGVPLAGKRAYVL----DDDLK--------PAANGALGELYVAGAGLAHG 422
Query: 403 YLKNEEATSQSF---------KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSV 453
Y+ T++ F +RTGD+ DG LE R+ D + G +
Sbjct: 423 YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPG 482
Query: 454 ELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLS 513
E+E L HP V +AAV+A + A++ + A + A++ + E L
Sbjct: 483 EVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA----PPDAAELRRHVAEALP 538
Query: 514 RFMVPKKVVILPELPKTATGKIQKFQL 540
+MVP + V + ELP+T GK+ + L
Sbjct: 539 AYMVPVECVPVDELPRTPNGKLDRRAL 565
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 92/395 (23%), Positives = 147/395 (37%), Gaps = 53/395 (13%)
Query: 188 LNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAA 247
L YTSG+T PKGV SH + + + + LP H G
Sbjct: 172 LQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDETIIFSWLPPHHDXGLIGCILTPI 231
Query: 248 RGGTNVCLRNTTAY-----DMYRNISQHRVTHMCCAPIVFNILLQAKPEERKE---IASP 299
GG + ++ ++I++++ T ++ ++ EE+KE ++S
Sbjct: 232 YGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSW 291
Query: 300 VQILTGGAPPPASLLEEI----ELLGFH---VTHAYGLTEATGPALVCEWQSSWNQLPKP 352
V G P E + GF YGL EAT SS+ L
Sbjct: 292 VTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLA 351
Query: 353 DQAKLKARQGISILTLAD----------------VDVKNLDTMSSVPRDGKTMGEIVLRG 396
+ R + AD +VK +D + +P D +GEI ++
Sbjct: 352 KEQFQDHR-----VHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQS 406
Query: 397 SSIMKGYLKNEEATSQSFKNG---------WFRTGDVGVIHPDGYLEIKDRSKDVIISGG 447
+S+ KGY E T +F + RTGD+G +H + L + R KD+II G
Sbjct: 407 NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYG 465
Query: 448 ENISSVELENVLFRHP--RVL---EAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEA 502
+N ++E L P VL A V+ H C + + + + NE
Sbjct: 466 KNHYPQDIEFSLXHSPLHHVLGKCAAFVIQEEHEYKLTVXCEVKNRFXDDVAQDNLFNEI 525
Query: 503 DILSYCRENLSRFMVPKKVVILPELPKTATGKIQK 537
L Y L + ++ L P T +GKI++
Sbjct: 526 FELVYENHQLEVHTI--VLIPLKAXPHTTSGKIRR 558
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 151/372 (40%), Gaps = 48/372 (12%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLI--LGWEMGSAPVYLWSLPMFHCNGWTFTWG-VA 246
+TSGTT PKGV SH T +I +++ P L + P + + W
Sbjct: 152 FTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQML-AQPPYSFDLSVMYWAPTL 210
Query: 247 ARGGTNVCLRNTTAYD---MYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQIL 303
A GGT L D ++ I+Q V P ++ + + + ++ +
Sbjct: 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFY 270
Query: 304 TGGAPPPASLLEEI--ELLGFHVTHAYGLTEAT----GPALVCEWQSSWNQLP----KPD 353
G S ++ + +AYG TEAT + E ++ +LP KPD
Sbjct: 271 FDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPD 330
Query: 354 QAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQS 413
S + D D K L + GEI++ G ++ KGYL N E T+++
Sbjct: 331 ----------SPTYIIDEDGKELSS--------GEQGEIIVTGPAVSKGYLNNPEKTAEA 372
Query: 414 F----KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAA 469
F + TGD+G + D L R I G I ++ L + P V A+
Sbjct: 373 FFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMV--AS 430
Query: 470 VVAMPH---PQWGESPCAFISVKTNSAGKTD---DVNEADILSYCRENLSRFMVPKKVVI 523
VA+P ++ A+I VK + D ++ +A I + ++++ +M+P K +
Sbjct: 431 AVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKA-IKASVKDHMMSYMMPSKFLY 489
Query: 524 LPELPKTATGKI 535
LP T GKI
Sbjct: 490 RDSLPLTPNGKI 501
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 139/372 (37%), Gaps = 52/372 (13%)
Query: 188 LNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWE-MGSAPV--YLWSLPMFHCNGWTFTWG 244
+N++SGTT PK + +H G L LG + AP +L + P+ WG
Sbjct: 169 INFSSGTTGRPKAIACTHAG----ITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWG 224
Query: 245 VAARGGTNVCLRNTTAYD---MYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQ 301
GG V L + D + + I + +FN L+ P+ + Q
Sbjct: 225 ALLNGGCCV-LNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---CLGGLRQ 280
Query: 302 ILTGG---APPPA--SLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAK 356
+LTGG + P +LL L H+ + YG TE T C + + L + D
Sbjct: 281 LLTGGDILSVPHVRRALLRHPRL---HLVNGYGPTENT--TFTCCHVVTDDDLEEDDIPI 335
Query: 357 LKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKN 416
KA G ++L LD + GEIV G+ + +GY + T SF
Sbjct: 336 GKAIAGTAVLL--------LDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVE 387
Query: 417 --------GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEA 468
+RTGD G L R + G + LE R P +L+
Sbjct: 388 LPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDC 447
Query: 469 AVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELP 528
A++ + CA+ GK D +A + L + P V + LP
Sbjct: 448 ALLVRERNGVKQLLCAWT-------GKADASPQALL-----RQLPTWQRPHACVRVEALP 495
Query: 529 KTATGKIQKFQL 540
TA GK+ + L
Sbjct: 496 LTAHGKLDRAAL 507
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 371 VDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPD 430
++++N + P + +G I + G S+ GY ++ + + GW TGD+G + D
Sbjct: 395 IEIRN---EAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-D 450
Query: 431 GYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKT 490
GYL + R KD+II G NI ++E + + P + +A Q E I +
Sbjct: 451 GYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRI 508
Query: 491 NSAGKTDDVNEADILSYCRENLSRFMVPKKVVILP--ELPKTATGK 534
+ + + I + S F V + +LP +P+T++GK
Sbjct: 509 SDEERRGQL----IHALAARIQSEFGVTAAIDLLPPHSIPRTSSGK 550
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 184 DPITLNYTSGTTSAPKGVVYSHR 206
D L YTSG+T P+GV+ +HR
Sbjct: 176 DIAYLQYTSGSTRFPRGVIITHR 198
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 55/376 (14%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLP----MFHCNGWTFT--- 242
YTSGTT PKGV H + +L G+ V+ +S +FH + F+
Sbjct: 182 YTSGTTGNPKGVPVRH--------ANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWE 233
Query: 243 -WGVAARGGTNVCLRNTTAY--DMYRNISQHR-VTHMCCAPIVFNILLQAKPEERKEIAS 298
WG + G V L + A + Y + R VT + P F L +A ++++
Sbjct: 234 IWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSG 293
Query: 299 PVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLK 358
++ GG A +L A+GL P LV + + + + +
Sbjct: 294 LRYVIFGGEKLTAPMLRPW-------AKAFGLDR---PRLVNGYGITETTVFTTFEEITE 343
Query: 359 A--RQGISILTLA----DVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQ 412
A Q SI+ A V D P G+T GE+ L G+ + +GYL+ E T++
Sbjct: 344 AYLAQDASIIGRALPSFGTRVVGDDGRDVAP--GET-GELWLSGAQLAEGYLRRPELTAE 400
Query: 413 SF------KNG----WFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRH 462
F K G ++RTGD+ PDG + R+ I G I ++E + RH
Sbjct: 401 KFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRH 460
Query: 463 PRVLEAAVVAMP-HPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKV 521
V++A V P CA+++ + ++ ++ ++ + L +M P +
Sbjct: 461 DDVVDAVVTVREFKPGDLRLVCAYVAREGSA------TTARELRNHIKTLLPAYMHPARY 514
Query: 522 VILPELPKTATGKIQK 537
+ LP LP+T GK+ +
Sbjct: 515 LPLPGLPRTVNGKVDR 530
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 14/156 (8%)
Query: 390 GEIVLRGSSIMKGYLKNEEATSQSF---KNGW-FRTGDVGVIHPDGYLEIKDRSKDVIIS 445
GEIV+ G S+ +GYL E T ++F + W +RTGD G I DG + + R I
Sbjct: 345 GEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKL 403
Query: 446 GGENISSVELENVLF--RHPRVLEAAVVAMPHPQWG--ESPCAFISVKTNSAGKTDDVNE 501
G + ELE + F R + + +AVV +P+ G E A I + + K +
Sbjct: 404 HGYRM---ELEEIEFHVRQSQYVRSAVV-IPYQPNGTVEYLIAAIVPEEHEFEKEFQLTS 459
Query: 502 ADILSYCRENLSRFMVPKKVVILPELPKTATGKIQK 537
A I +L +M+P+K + + TA GKI +
Sbjct: 460 A-IKKELAASLPAYMIPRKFIYQDHIQMTANGKIDR 494
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 138/364 (37%), Gaps = 29/364 (7%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249
YTSG+T PKGV ++ T + + + + V+L P + G
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 250 GTNVCLRN---TTAYDMYRNISQHRVTHMCCAPIVFNI-LLQAKPEERKEIASPVQILTG 305
GT + D++ ++ Q + P + L++A E + G
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270
Query: 306 GAPPPASLLEEIELL-GFHVTHAYGLTEAT----GPALVCEWQSSWNQLPKPDQAKLKAR 360
P + IE + + YG TEAT G + E + LP
Sbjct: 271 EVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG-------- 322
Query: 361 QGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFK----N 416
+D + + ++ DG+ GEIV+ G S+ GYL + E T ++F
Sbjct: 323 -----YCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 417 GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP 476
++TGD G + +G L R I G + E+E+ L V A +V +
Sbjct: 377 RAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435
Query: 477 QWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQ 536
+ + A + +S K + A I E L +M+P+K + +P T GK+
Sbjct: 436 EKYDYLLAVVVPGEHSFEKEFKLTSA-IKKELNERLPNYMIPRKFMYQSSIPMTPNGKVD 494
Query: 537 KFQL 540
+ +L
Sbjct: 495 RKKL 498
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/364 (22%), Positives = 138/364 (37%), Gaps = 29/364 (7%)
Query: 190 YTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249
YTSG+T PKGV ++ T + + + + V+L P + G
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 250 GTNVCLRN---TTAYDMYRNISQHRVTHMCCAPIVFNI-LLQAKPEERKEIASPVQILTG 305
GT + D++ ++ Q + P + L++A E + G
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCG 270
Query: 306 GAPPPASLLEEIELL-GFHVTHAYGLTEAT----GPALVCEWQSSWNQLPKPDQAKLKAR 360
P + IE + + YG TEAT G + E + LP
Sbjct: 271 EVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVG-------- 322
Query: 361 QGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFK----N 416
+D + + ++ DG+ GEIV+ G S+ GYL + E T ++F
Sbjct: 323 -----YCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 417 GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP 476
++TGD G + +G L R I G + E+E+ L V A +V +
Sbjct: 377 RAYKTGDAGYVE-NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435
Query: 477 QWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQ 536
+ + A + +S K + A I E L +M+P+K + +P T GK+
Sbjct: 436 EKYDYLLAVVVPGEHSFEKEFKLTSA-IKKELNERLPNYMIPRKFMYQSSIPMTPNGKVD 494
Query: 537 KFQL 540
+ +L
Sbjct: 495 RKKL 498
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/336 (21%), Positives = 126/336 (37%), Gaps = 74/336 (22%)
Query: 142 PRVILID--DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPK 199
P +I +D D+D+P G F E EY P + L YTSG+T P
Sbjct: 159 PSIIEVDLLDLDAPNGYTFKEDEY------------PSTAY-------LQYTSGSTRTPA 199
Query: 200 GVVYSHRGAYLSTLSLILGWEMGS-------APVYLWSLPMFHCNGWTFTWGVAARGGTN 252
GVV SH+ ++ L G+ + + + W LP +H G GG
Sbjct: 200 GVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSW-LPFYHDXGLVIGICAPILGGYP 258
Query: 253 VCLRNTTAY----DMYRNISQHRVTHMCCAP-IVFNILLQAKPEER---KEIASPVQILT 304
L + ++ + ++ AP F + + ++ +++ + + IL+
Sbjct: 259 AVLTSPVSFLQRPARWXHLXASDFHAFSAAPNFAFELAARRTTDDDXAGRDLGNILTILS 318
Query: 305 GGAPPPASLLEEI--ELLGFHVTH-----AYGLTEATGPALVCEWQSSWNQLPKP---DQ 354
G A+ ++ F++ +YGL EAT V S Q P+ D
Sbjct: 319 GSERVQAATIKRFADRFARFNLQERVIRPSYGLAEAT----VYVATSKPGQPPETVDFDT 374
Query: 355 AKLKARQG-----------ISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGY 403
L A IS V+ +D+ + + T+GEI + G ++ GY
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGY 434
Query: 404 LKNEEATSQSF------------KNGWFRTGDVGVI 427
+ + + ++F + W RTGD G +
Sbjct: 435 WQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFV 470
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 129/347 (37%), Gaps = 75/347 (21%)
Query: 142 PRVILID--DIDSPTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPK 199
P +I +D D+D+P G F E EY P + L YTSG+T P
Sbjct: 159 PSIIEVDLLDLDAPNGYTFKEDEY------------PSTAY-------LQYTSGSTRTPA 199
Query: 200 GVVYSHRGAYLSTLSLILGWEMGS-------APVYLWSLPMFHCNGWTFTWGVAARGGTN 252
GVV SH+ ++ L+ G+ + + + W LP +H G GG
Sbjct: 200 GVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-LPFYHDMGLVIGICAPILGGYP 258
Query: 253 VCLRNTTAYDMYRNISQHRVT---HMCCAPIVFNILLQAKPEERKEIASP-----VQILT 304
L + ++ H + H A F L A+ ++A + IL+
Sbjct: 259 AVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILS 318
Query: 305 GGAPPPASLLEEI--ELLGFHVTH-----AYGLTEATGPALVCEWQSSWNQLPKP---DQ 354
G A+ ++ F++ +Y L EAT V S Q P+ D
Sbjct: 319 GSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT----VYVATSKPGQPPETVDFDT 374
Query: 355 AKLKARQG-----------ISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGY 403
L A IS + V+ +D+ + + T+GEI + G ++ GY
Sbjct: 375 ESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGY 434
Query: 404 LKNEEATSQSF------------KNGWFRTGDVGVIHPDGYLEIKDR 438
+ + + ++F + W RTGD G + DG + I R
Sbjct: 435 WQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 109/291 (37%), Gaps = 72/291 (24%)
Query: 184 DPITLNYTSGTTSAPKGVVYSHR---GAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWT 240
D + +TSG+T PKGV+ HR G YL G + V+L P+ W
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLGQDYAGFGPDE----VFLQCSPV----SWD 266
Query: 241 FTWGVAARG----GTNVCL---RNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEER 293
+G+ G G L +N ++ +++H VT + + +FN L+ PE
Sbjct: 267 -AFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAF 325
Query: 294 KEIASPVQILTGGAPP------------PASLLEE----IELLGFHVTHAYGLTEATGPA 337
+ + +TGG P PA L E +GF HA + +G A
Sbjct: 326 EGVR---YAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA 382
Query: 338 LVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS 397
L P L ++ + D D+K P +GE+ + G+
Sbjct: 383 L-------------PIGVPLAGKRAYVL----DDDLK--------PAANGALGELYVAGA 417
Query: 398 SIMKGYLKNEEATSQSF---------KNGWFRTGDVGVIHPDGYLEIKDRS 439
+ GY+ T++ F +RTGD+ DG LE R+
Sbjct: 418 GLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRA 468
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 97/395 (24%), Positives = 152/395 (38%), Gaps = 68/395 (17%)
Query: 188 LNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGS-AP--VYLWSLPMFHCNG------ 238
L YTSG+T PKGV S LS+ S G +G+ AP + L + F C
Sbjct: 180 LLYTSGSTGTPKGVRVSRHN--LSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDV 237
Query: 239 --------WTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAK- 289
W F G+ A G R + D+ R + VTH A IV ++L Q
Sbjct: 238 HIGEXFLAWRF--GLCAVTGE----RLSXLDDLPRTFRELGVTH---AGIVPSLLDQTGL 288
Query: 290 -PEERKEIASPVQILTGG---APPPASLLEEIELLGFHVTHAYGLTEATGPALVCEWQSS 345
PE+ + V + GG P + + + + + YG TE T + C S+
Sbjct: 289 VPEDAPHL---VYLGVGGEKXTPRTQQIWSSSDRVA--LVNVYGPTEVT---IGC---SA 337
Query: 346 WNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLK 405
LP D + G S+ + L S+ GE+V+ GS + GYL
Sbjct: 338 GRILPDSDTRCIGHPLGDSVAHV-------LAPGSNEHVKKGXAGELVIEGSLVANGYLN 390
Query: 406 NEEATSQSFKNG--WFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR-H 462
+A NG +RTGD+ D + R + + G+ + E+ V+
Sbjct: 391 RPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLS 450
Query: 463 PRVLEAAVVAMPHPQWGESPCAFISVKTNSA----GKTDDVNE------ADILSYCRENL 512
P ++ + + HP G S +S +S G+ +NE + C + L
Sbjct: 451 PTDIDVVTLLLNHP--GTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTL 508
Query: 513 SRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547
+ VP ++ + +P T K +AL F
Sbjct: 509 PAYXVPDFIIPISFIPLRDTS--AKTDAKALEHXF 541
>pdb|1GBS|A Chain A, Crystal Structure Of Black Swan Goose-Type Lysozyme At 1.8
Angstroms Resolution
pdb|1LSP|A Chain A, The Crystal Structure Of A Bulgecin-inhibited G-type
Lysozyme From The Egg-white Of The Australian Black
Swan. A Comparison Of The Binding Of Bulgecin To Three
Muramidases
Length = 185
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 367 TLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGV 426
T+A+ D+K +D ++ K +GE + +++ G + E + KNGW GD G
Sbjct: 36 TIAERDLKAMDRYKTII---KKVGEKLCVEPAVIAGIISRESHAGKVLKNGW---GDRG- 88
Query: 427 IHPDGYLEIKDRS 439
+ G +++ RS
Sbjct: 89 -NGFGLMQVDKRS 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,620,552
Number of Sequences: 62578
Number of extensions: 697326
Number of successful extensions: 1578
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1381
Number of HSP's gapped (non-prelim): 82
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)