Query 038104
Match_columns 567
No_of_seqs 172 out of 2342
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:49:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 1.8E-80 6.2E-85 651.2 52.4 510 8-546 15-535 (536)
2 3g7s_A Long-chain-fatty-acid-- 100.0 4.9E-81 1.7E-85 657.5 48.0 509 7-547 12-543 (549)
3 3r44_A Fatty acyl COA syntheta 100.0 1E-79 3.4E-84 642.3 51.6 499 12-547 14-514 (517)
4 1v25_A Long-chain-fatty-acid-C 100.0 1.5E-80 5.1E-85 652.2 45.1 515 9-546 13-536 (541)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.9E-79 9.9E-84 642.1 51.6 501 11-547 22-532 (539)
6 2d1s_A Luciferase, luciferin 4 100.0 2.1E-78 7E-83 636.5 53.2 503 14-547 25-544 (548)
7 4fuq_A Malonyl COA synthetase; 100.0 8.3E-79 2.8E-83 633.2 48.4 492 18-547 4-501 (503)
8 3o83_A Peptide arylation enzym 100.0 1.5E-79 5.1E-84 645.1 41.9 506 10-547 26-541 (544)
9 3ivr_A Putative long-chain-fat 100.0 1.4E-79 4.6E-84 641.2 40.7 498 9-547 1-502 (509)
10 3rix_A Luciferase, luciferin 4 100.0 1.1E-79 3.7E-84 647.4 40.1 513 7-548 13-543 (550)
11 3etc_A AMP-binding protein; ad 100.0 3E-77 1E-81 630.5 54.6 505 13-546 54-579 (580)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.7E-77 5.8E-82 624.2 50.6 484 14-545 2-503 (504)
13 3fce_A D-alanine--poly(phospho 100.0 6.1E-77 2.1E-81 621.7 48.9 500 14-552 1-510 (512)
14 3e7w_A D-alanine--poly(phospho 100.0 3.7E-76 1.3E-80 615.3 54.4 499 14-552 1-509 (511)
15 1pg4_A Acetyl-COA synthetase; 100.0 1.6E-76 5.5E-81 633.5 52.2 510 15-547 77-622 (652)
16 1ry2_A Acetyl-coenzyme A synth 100.0 1.8E-76 6.3E-81 633.1 51.1 521 9-547 73-638 (663)
17 3c5e_A Acyl-coenzyme A synthet 100.0 7.4E-76 2.5E-80 619.1 52.4 504 14-547 37-563 (570)
18 3rg2_A Enterobactin synthase c 100.0 1.5E-75 5E-80 623.6 52.8 502 10-548 23-536 (617)
19 3ipl_A 2-succinylbenzoate--COA 100.0 6.3E-77 2.1E-81 620.2 39.4 494 14-546 1-497 (501)
20 1amu_A GRSA, gramicidin synthe 100.0 1.1E-75 3.8E-80 616.8 47.5 481 13-545 38-528 (563)
21 3l8c_A D-alanine--poly(phospho 100.0 1.8E-75 6.2E-80 612.2 48.4 504 12-553 2-519 (521)
22 2v7b_A Benzoate-coenzyme A lig 100.0 5.2E-75 1.8E-79 609.6 51.0 498 16-542 26-528 (529)
23 4gr5_A Non-ribosomal peptide s 100.0 1.8E-76 6E-81 625.2 35.6 484 12-544 73-569 (570)
24 3tsy_A Fusion protein 4-coumar 100.0 4.3E-76 1.5E-80 659.7 38.9 519 13-554 60-590 (979)
25 4dg8_A PA1221; ANL superfamily 100.0 1.9E-74 6.5E-79 612.2 45.3 479 11-547 24-514 (620)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3.8E-74 1.3E-78 598.0 33.7 476 12-542 20-504 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 4E-73 1.4E-77 604.2 36.6 519 7-556 4-577 (590)
28 3ite_A SIDN siderophore synthe 100.0 3.5E-73 1.2E-77 600.2 31.8 499 11-550 17-547 (562)
29 3gqw_A Fatty acid AMP ligase; 100.0 2.9E-70 1E-74 580.9 42.8 502 13-550 20-567 (576)
30 2vsq_A Surfactin synthetase su 100.0 6.4E-70 2.2E-74 624.4 45.1 490 8-545 458-959 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.3E-58 4.3E-63 480.4 30.2 405 6-438 16-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 5.4E-53 1.9E-57 417.8 21.5 316 182-547 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.2E-47 7.5E-52 390.1 24.2 329 180-539 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.7E-47 9.4E-52 390.2 22.3 329 180-541 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 9.3E-47 3.2E-51 385.6 21.8 328 180-539 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 7.8E-29 2.7E-33 247.0 15.5 236 180-448 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.6 7.1E-15 2.4E-19 117.2 7.7 99 437-538 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 7.7E-15 2.6E-19 117.3 7.2 98 437-537 1-101 (109)
39 4eql_A 4-substituted benzoates 98.8 3.1E-08 1E-12 101.2 14.6 60 387-462 384-447 (581)
40 4epl_A Jasmonic acid-amido syn 98.8 3.6E-08 1.2E-12 100.4 14.7 74 381-472 387-472 (581)
41 4b2g_A GH3-1 auxin conjugating 98.8 3.8E-08 1.3E-12 100.6 14.0 74 381-472 392-477 (609)
42 3qov_A Phenylacetate-coenzyme 94.1 0.6 2.1E-05 46.4 13.5 92 38-130 104-197 (436)
43 2y27_A Phenylacetate-coenzyme 93.9 0.75 2.6E-05 45.7 13.8 92 38-130 108-201 (437)
44 2y4o_A Phenylacetate-coenzyme 93.8 0.76 2.6E-05 45.8 13.7 91 38-129 110-202 (443)
45 3ipl_A 2-succinylbenzoate--COA 84.4 8.5 0.00029 38.7 12.4 97 27-127 161-267 (501)
46 1mdb_A 2,3-dihydroxybenzoate-A 84.1 17 0.00058 37.0 14.6 99 27-129 180-290 (539)
47 3o83_A Peptide arylation enzym 82.7 15 0.0005 37.5 13.4 98 28-129 190-299 (544)
48 3rg2_A Enterobactin synthase c 82.7 20 0.00069 37.2 14.7 88 38-129 202-292 (617)
49 2d1s_A Luciferase, luciferin 4 81.4 7 0.00024 40.0 10.4 96 29-126 192-298 (548)
50 3r44_A Fatty acyl COA syntheta 80.1 17 0.00056 36.8 12.6 86 38-128 188-275 (517)
51 3hgu_A EHPF; phenazine, antibi 79.6 5 0.00017 38.5 8.2 87 38-126 109-220 (369)
52 3kxw_A Saframycin MX1 syntheta 77.9 18 0.00061 37.2 12.3 99 27-128 165-277 (590)
53 3g7s_A Long-chain-fatty-acid-- 75.3 26 0.0009 35.6 12.6 89 38-130 198-287 (549)
54 4gs5_A Acyl-COA synthetase (AM 74.9 8 0.00027 37.0 8.0 83 38-126 55-138 (358)
55 3rix_A Luciferase, luciferin 4 74.2 14 0.00048 37.7 10.2 89 38-127 208-297 (550)
56 1v25_A Long-chain-fatty-acid-C 72.2 26 0.00089 35.6 11.6 91 38-129 194-285 (541)
57 1t5h_X 4-chlorobenzoyl COA lig 72.0 22 0.00075 35.7 10.9 99 27-129 151-262 (504)
58 3fce_A D-alanine--poly(phospho 70.4 11 0.00039 37.9 8.4 84 38-124 162-248 (512)
59 3ivr_A Putative long-chain-fat 68.4 39 0.0013 33.9 11.9 85 38-127 178-264 (509)
60 3c5e_A Acyl-coenzyme A synthet 68.2 25 0.00084 36.1 10.4 96 28-126 205-312 (570)
61 3e7w_A D-alanine--poly(phospho 68.0 15 0.00052 37.0 8.7 85 38-125 161-248 (511)
62 1pg4_A Acetyl-COA synthetase; 66.9 37 0.0013 35.4 11.6 89 38-128 274-367 (652)
63 3ni2_A 4-coumarate:COA ligase; 64.7 33 0.0011 34.8 10.5 97 181-285 35-135 (536)
64 3nyq_A Malonyl-COA ligase; A/B 64.4 31 0.0011 34.6 10.2 86 38-128 173-260 (505)
65 4gr5_A Non-ribosomal peptide s 63.2 52 0.0018 33.5 11.8 99 27-129 212-321 (570)
66 3tbh_A O-acetyl serine sulfhyd 62.4 51 0.0018 30.9 10.6 91 28-120 34-127 (334)
67 4dg8_A PA1221; ANL superfamily 61.5 51 0.0018 34.1 11.4 97 28-128 163-270 (620)
68 3gqw_A Fatty acid AMP ligase; 59.9 55 0.0019 33.3 11.3 98 28-127 175-286 (576)
69 3t5a_A Long-chain-fatty-acid-- 59.6 56 0.0019 32.2 11.0 106 181-288 37-149 (480)
70 3etc_A AMP-binding protein; ad 56.8 65 0.0022 32.9 11.1 94 181-279 69-166 (580)
71 3ezx_A MMCP 1, monomethylamine 55.3 98 0.0034 26.8 10.4 91 225-317 93-195 (215)
72 1amu_A GRSA, gramicidin synthe 54.0 80 0.0027 32.1 11.2 84 201-285 63-150 (563)
73 4fuq_A Malonyl COA synthetase; 52.3 88 0.003 31.2 11.1 79 202-281 28-110 (503)
74 3tsy_A Fusion protein 4-coumar 51.3 63 0.0022 35.6 10.5 101 27-128 223-335 (979)
75 3vc3_A Beta-cyanoalnine syntha 46.0 95 0.0033 29.2 9.5 92 28-120 49-142 (344)
76 3ite_A SIDN siderophore synthe 45.5 54 0.0019 33.3 8.3 87 38-124 193-285 (562)
77 4h1h_A LMO1638 protein; MCCF-l 45.1 61 0.0021 30.3 7.9 59 60-118 8-85 (327)
78 3sr3_A Microcin immunity prote 43.9 66 0.0022 30.2 7.9 59 60-118 9-86 (336)
79 1ry2_A Acetyl-coenzyme A synth 41.0 1.1E+02 0.0039 31.7 10.1 96 181-280 95-195 (663)
80 2v7b_A Benzoate-coenzyme A lig 40.1 1E+02 0.0035 30.9 9.3 83 202-285 48-134 (529)
81 3tla_A MCCF; serine protease, 40.0 73 0.0025 30.4 7.5 17 59-75 38-54 (371)
82 4e5s_A MCCFLIKE protein (BA_56 39.2 76 0.0026 29.7 7.5 16 60-75 8-23 (331)
83 2q3b_A Cysteine synthase A; py 38.5 1.6E+02 0.0054 27.1 9.7 89 29-120 31-122 (313)
84 2egu_A Cysteine synthase; O-ac 38.5 1.7E+02 0.0057 26.9 9.8 89 29-120 29-120 (308)
85 2cvi_A 75AA long hypothetical 37.1 84 0.0029 22.0 5.9 48 452-514 15-62 (83)
86 1y7l_A O-acetylserine sulfhydr 36.5 2.2E+02 0.0074 26.2 10.3 89 29-120 26-117 (316)
87 1ve1_A O-acetylserine sulfhydr 35.3 2.6E+02 0.0089 25.5 10.9 89 29-120 24-117 (304)
88 4aec_A Cysteine synthase, mito 35.2 1.7E+02 0.0057 28.6 9.4 63 57-119 166-229 (430)
89 1z7w_A Cysteine synthase; tran 35.2 1.8E+02 0.006 26.9 9.4 89 29-120 30-122 (322)
90 2pqm_A Cysteine synthase; OASS 35.1 1.6E+02 0.0055 27.6 9.2 88 30-120 43-133 (343)
91 4eez_A Alcohol dehydrogenase 1 34.7 1.9E+02 0.0066 26.8 9.8 77 39-118 136-215 (348)
92 2vsq_A Surfactin synthetase su 34.7 1.2E+02 0.0042 34.6 9.7 97 27-127 605-713 (1304)
93 2zbc_A 83AA long hypothetical 33.6 1.1E+02 0.0039 21.1 6.2 47 452-514 15-62 (83)
94 3ju7_A Putative PLP-dependent 32.7 72 0.0024 30.4 6.4 60 56-118 70-136 (377)
95 3tqh_A Quinone oxidoreductase; 32.3 1.1E+02 0.0039 28.1 7.6 74 39-117 125-202 (321)
96 3ijw_A Aminoglycoside N3-acety 32.1 30 0.001 31.2 3.2 24 50-73 18-41 (268)
97 3b8x_A WBDK, pyridoxamine 5-ph 30.6 3.3E+02 0.011 25.6 10.9 54 60-117 76-134 (390)
98 2v03_A Cysteine synthase B; py 30.6 2.6E+02 0.0088 25.5 9.6 88 29-119 25-115 (303)
99 3two_A Mannitol dehydrogenase; 30.3 1.6E+02 0.0055 27.5 8.4 75 38-116 148-225 (348)
100 2nyg_A YOKD protein; PFAM02522 30.0 34 0.0012 31.0 3.2 23 51-73 17-39 (273)
101 3sma_A FRBF; N-acetyl transfer 29.9 34 0.0012 31.1 3.2 30 37-73 19-48 (286)
102 1zsy_A Mitochondrial 2-enoyl t 29.9 1.6E+02 0.0055 27.6 8.4 79 39-118 139-223 (357)
103 3nra_A Aspartate aminotransfer 29.6 3.6E+02 0.012 25.3 13.3 53 61-117 123-185 (407)
104 2jtq_A Phage shock protein E; 29.6 99 0.0034 21.6 5.3 46 38-90 22-67 (85)
105 3pc3_A CG1753, isoform A; CBS, 29.4 1.8E+02 0.0063 29.1 9.1 87 30-119 78-167 (527)
106 1vjk_A Molybdopterin convertin 28.9 1E+02 0.0034 22.6 5.3 45 13-72 36-94 (98)
107 3ppl_A Aspartate aminotransfer 28.2 2.8E+02 0.0097 26.4 10.1 53 64-119 133-188 (427)
108 3gi1_A LBP, laminin-binding pr 28.1 3.4E+02 0.011 24.5 10.1 85 42-130 156-247 (286)
109 1toa_A Tromp-1, protein (perip 27.8 1.3E+02 0.0046 27.7 7.1 87 42-130 172-265 (313)
110 1ofu_X SULA, hypothetical prot 27.3 2.1E+02 0.0072 21.9 7.3 54 52-105 46-101 (119)
111 3aow_A Putative uncharacterize 26.8 4.4E+02 0.015 25.4 11.8 52 62-116 162-221 (448)
112 3ri6_A O-acetylhomoserine sulf 26.8 3.8E+02 0.013 25.8 10.6 58 69-126 101-161 (430)
113 1y81_A Conserved hypothetical 26.6 1.4E+02 0.0048 23.5 6.1 57 64-123 70-126 (138)
114 1h2b_A Alcohol dehydrogenase; 26.1 2.1E+02 0.0073 26.8 8.4 62 55-119 176-239 (359)
115 3l6b_A Serine racemase; pyrido 25.4 1.7E+02 0.0058 27.4 7.5 58 64-122 76-133 (346)
116 3l8c_A D-alanine--poly(phospho 25.0 2.1E+02 0.0072 28.4 8.6 77 202-279 29-109 (521)
117 1y80_A Predicted cobalamin bin 24.6 2.4E+02 0.0082 24.0 7.8 83 38-120 55-148 (210)
118 2ayi_A Aminopeptidase T; metal 24.5 1.4E+02 0.0049 28.8 6.8 51 45-95 4-58 (408)
119 2duw_A Putative COA-binding pr 24.5 1.2E+02 0.0042 24.1 5.4 31 83-113 89-119 (145)
120 3s2e_A Zinc-containing alcohol 24.4 2.1E+02 0.0073 26.5 8.0 77 38-118 138-217 (340)
121 3mfq_A TROA, high-affinity zin 24.1 1.3E+02 0.0043 27.4 6.1 87 41-129 137-230 (282)
122 3hh8_A Metal ABC transporter s 23.2 1.5E+02 0.0051 27.1 6.4 86 42-129 158-250 (294)
123 1zl0_A Hypothetical protein PA 23.2 2E+02 0.0069 26.5 7.3 16 60-75 13-28 (311)
124 1o69_A Aminotransferase; struc 22.9 2.6E+02 0.0088 26.4 8.5 56 60-118 68-129 (394)
125 1eg5_A Aminotransferase; PLP-d 22.2 2.3E+02 0.0079 26.4 8.0 55 62-117 87-145 (384)
126 3dwg_A Cysteine synthase B; su 21.8 3.6E+02 0.012 24.8 9.0 64 56-120 64-128 (325)
127 2e7j_A SEP-tRNA:Cys-tRNA synth 21.5 3.4E+02 0.012 25.0 9.0 55 61-118 90-154 (371)
128 1gu7_A Enoyl-[acyl-carrier-pro 21.4 2.1E+02 0.0071 26.8 7.4 79 39-118 138-223 (364)
129 3fpc_A NADP-dependent alcohol 21.3 2.2E+02 0.0075 26.6 7.5 77 38-118 138-218 (352)
130 1oft_A SULA, hypothetical prot 21.1 2.2E+02 0.0077 23.2 6.2 34 55-88 91-124 (161)
131 2rkb_A Serine dehydratase-like 21.1 4.7E+02 0.016 23.8 9.9 90 28-123 21-112 (318)
132 4ej6_A Putative zinc-binding d 21.1 2.4E+02 0.0084 26.5 7.8 58 56-117 175-233 (370)
133 2cf5_A Atccad5, CAD, cinnamyl 21.0 2.2E+02 0.0077 26.6 7.5 79 38-119 151-233 (357)
134 1d2f_A MALY protein; aminotran 20.8 5.1E+02 0.017 24.1 10.4 54 61-117 108-168 (390)
135 2o1e_A YCDH; alpha-beta protei 20.8 2E+02 0.007 26.4 6.9 87 42-130 167-258 (312)
136 1zjc_A Aminopeptidase AMPS; me 20.8 1.4E+02 0.0049 28.9 5.9 51 45-95 7-61 (418)
137 2djw_A Probable transcriptiona 20.8 1.1E+02 0.0039 21.8 4.2 47 452-513 15-61 (92)
138 3qwb_A Probable quinone oxidor 20.8 4.8E+02 0.017 23.8 9.7 56 59-118 144-200 (334)
139 3a2k_A TRNA(Ile)-lysidine synt 20.4 3.8E+02 0.013 26.3 9.1 69 51-119 4-86 (464)
140 2cvh_A DNA repair and recombin 20.4 3.8E+02 0.013 22.4 9.8 52 60-112 16-71 (220)
141 3jv7_A ADH-A; dehydrogenase, n 20.3 2.9E+02 0.0098 25.6 8.0 78 40-120 143-225 (345)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.8e-80 Score=651.24 Aligned_cols=510 Identities=25% Similarity=0.378 Sum_probs=443.9
Q ss_pred cccCC-CCCHHHHHHHHHHHcCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHh
Q 038104 8 EANYV-PLSPLTFLKRAAAVYGNRTSIIYE--GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAV 84 (567)
Q Consensus 8 ~~~~~-~~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~ 84 (567)
+.+.+ ++|+.++|.++++++|+++|+++. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||
T Consensus 15 ~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~ 94 (536)
T 3ni2_A 15 DIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGA 94 (536)
T ss_dssp CCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 34444 489999999999999999999985 589999999999999999999999999999999999999999999999
Q ss_pred hhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHH
Q 038104 85 PMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYE 164 (567)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 164 (567)
+++|++++|++|.++.+++.++++.++++++|++....+.+.+..... ...++.++... .+...+.
T Consensus 95 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------~~~~~~~ 160 (536)
T 3ni2_A 95 SHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--------DVKVMCVDSAP------DGCLHFS 160 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--------TCEEEESSCCC------TTCEETH
T ss_pred HHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--------CceEEEecCCC------CCccCHH
Confidence 999999999999999999999999999999999998888777665432 13444444321 2334566
Q ss_pred HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhh----hccCCCCCEEEEecchHhhhhHH
Q 038104 165 QFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLIL----GWEMGSAPVYLWSLPMFHCNGWT 240 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~ 240 (567)
++........ +.....++++++++|||||||.||+|.++|+++......... .+++.++|+++..+|++|.+++.
T Consensus 161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 6554433222 223356789999999999999999999999999877665543 34688999999999999999986
Q ss_pred H-HHHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-
Q 038104 241 F-TWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE- 318 (567)
Q Consensus 241 ~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~- 318 (567)
. ++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+.++
T Consensus 240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 319 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRA 319 (536)
T ss_dssp HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHH
Confidence 5 67888999999999999999999999999999999999999999998877778899999999999999999999998
Q ss_pred Hh-CCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecC
Q 038104 319 LL-GFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGS 397 (567)
Q Consensus 319 ~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~ 397 (567)
.+ ++++++.||+||++++++.+..... .........+|.|+++. +++|+|.+++.+++.| +.|||+++|+
T Consensus 320 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~ 390 (536)
T 3ni2_A 320 KFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGD 390 (536)
T ss_dssp HCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred HCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCc
Confidence 55 8999999999999977665432111 01112235689999998 9999998888999888 8899999999
Q ss_pred ccchhccCChhhhhhcc-cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCC
Q 038104 398 SIMKGYLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP 476 (567)
Q Consensus 398 ~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 476 (567)
+++.||+++++.+.+.| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++
T Consensus 391 ~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 470 (536)
T 3ni2_A 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE 470 (536)
T ss_dssp TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred ccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecC
Confidence 99999999999999999 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHh
Q 038104 477 QWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKN 546 (567)
Q Consensus 477 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~ 546 (567)
..|+.++++|+..++. ..+.++|+++++++|+.|++|..++++++||+|++||++|++|++++..
T Consensus 471 ~~g~~~~a~vv~~~~~-----~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 471 DAGEVPVAFVVKSEKS-----QATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTEEEEEEEEEECTTC-----CCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCceeEEEEEecCCC-----CCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 9999999999987765 5788999999999999999999999999999999999999999988764
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.9e-81 Score=657.48 Aligned_cols=509 Identities=27% Similarity=0.391 Sum_probs=410.8
Q ss_pred ccccCCCCCHHHHHHHHHHHcCCceEEEeCC--------eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHH
Q 038104 7 CEANYVPLSPLTFLKRAAAVYGNRTSIIYEG--------ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMY 78 (567)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~ 78 (567)
++..++++|+.++|+++++++||++|+++.+ +++||+||.++++++|++|.++|+++||+|+|+++|+++++
T Consensus 12 p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~ 91 (549)
T 3g7s_A 12 PSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV 91 (549)
T ss_dssp CCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence 5677899999999999999999999999977 89999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccC
Q 038104 79 EMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRF 158 (567)
Q Consensus 79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 158 (567)
+++|||+++|++++|++|.++.+++.++++.++++++|++....+.+....... ....++..+.
T Consensus 92 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------- 155 (549)
T 3g7s_A 92 MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT-------GVERVFVVGG--------- 155 (549)
T ss_dssp HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS-------CCCEEEEETC---------
T ss_pred HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC-------CCcEEEEeCC---------
Confidence 999999999999999999999999999999999999999999888777765533 2344555432
Q ss_pred CcccHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhh
Q 038104 159 GEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNG 238 (567)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 238 (567)
....+.++...............++++++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~ 235 (549)
T 3g7s_A 156 EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAE 235 (549)
T ss_dssp SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHH
T ss_pred CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHH
Confidence 22456666665544433333233489999999999999999999999999999988888889999999999999999999
Q ss_pred HHHHHHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCccc--ccCCCceEEEEcCCCCCHHHHHH
Q 038104 239 WTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEER--KEIASPVQILTGGAPPPASLLEE 316 (567)
Q Consensus 239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~l~~l~~~~~~g~~l~~~~~~~ 316 (567)
+..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... ..+++++.+++||+++++++.+.
T Consensus 236 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~ 315 (549)
T 3g7s_A 236 FGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEK 315 (549)
T ss_dssp HHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHH
Confidence 8888888899999999999999999999999999999999999999987644333 56789999999999999999999
Q ss_pred HHH-----hC---CeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcc
Q 038104 317 IEL-----LG---FHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKT 388 (567)
Q Consensus 317 ~~~-----~~---~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~ 388 (567)
+.+ ++ +++++.||+||++.+++.+... .......+|.|+++. .++|+|.+++.+++.| +
T Consensus 316 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~ 382 (549)
T 3g7s_A 316 LLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDGRELGVG--E 382 (549)
T ss_dssp HHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSCCEECTT--C
T ss_pred HHHHHHhhcCCccccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCCcCCCCC--C
Confidence 874 45 8999999999999877654311 123346789999998 9999998889999888 8
Q ss_pred eeEEEEecCccchhccCChhhhhhcc---cCC--cccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCC
Q 038104 389 MGEIVLRGSSIMKGYLKNEEATSQSF---KNG--WFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHP 463 (567)
Q Consensus 389 ~Gel~v~~~~~~~gy~~~~~~~~~~~---~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 463 (567)
.|||+++|++++.||+++++.+.+.| .+| ||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|
T Consensus 383 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p 462 (549)
T 3g7s_A 383 SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHE 462 (549)
T ss_dssp CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTST
T ss_pred ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCC
Confidence 89999999999999999999999998 677 9999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHH
Q 038104 464 RVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRAL 543 (567)
Q Consensus 464 ~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~ 543 (567)
+|.+++|++++++..|+.++++|+..++... ..+.++|+++++++|+.|++|..|+++++||+|++||++|++|+++
T Consensus 463 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 539 (549)
T 3g7s_A 463 AVMDVAVIGKPDEEAGEVPKAFIVLKPEYRG---KVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREK 539 (549)
T ss_dssp TEEEEEEECCCC------CEEEEEECSTTTT---SCCHHHHHHHHHTTCC-----CCCCEEEECC---------------
T ss_pred CeeeEEEEeeEccccCceEEEEEEECCCccC---cCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHH
Confidence 9999999999999999999999998876321 5788999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 038104 544 AKNF 547 (567)
Q Consensus 544 ~~~~ 547 (567)
+.+-
T Consensus 540 ~~~~ 543 (549)
T 3g7s_A 540 EAEG 543 (549)
T ss_dssp ----
T ss_pred hhcc
Confidence 8764
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1e-79 Score=642.28 Aligned_cols=499 Identities=29% Similarity=0.401 Sum_probs=433.2
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeCCe--eeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccc
Q 038104 12 VPLSPLTFLKRAAAVYGNRTSIIYEGA--RFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEA 89 (567)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (567)
.+.|+.++|+++++++|+++|+++.+. ++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|+
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 93 (517)
T 3r44_A 14 KMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 93 (517)
T ss_dssp GGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCc
Confidence 677999999999999999999999776 999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhc
Q 038104 90 VLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQM 169 (567)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 169 (567)
+++|++|.++.+++.++++.++++++|++......+........ ....++.... ...+.+....
T Consensus 94 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~~~~~~~~~ 157 (517)
T 3r44_A 94 VAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD------PPGTVTDWIG----------ADSLAERLRS 157 (517)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS------CCTTCCEEEE----------HHHHHHHHHH
T ss_pred EEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC------CccEEEEccC----------cccHHHHhhc
Confidence 99999999999999999999999999999988777766554322 1111211111 1234444443
Q ss_pred CCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhC
Q 038104 170 GDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249 (567)
Q Consensus 170 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g 249 (567)
..... +.....++++++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|..++...+.+++.|
T Consensus 158 ~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G 236 (517)
T 3r44_A 158 AAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRG 236 (517)
T ss_dssp CCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred cCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcC
Confidence 33222 22335678999999999999999999999999999998888888999999999999999999998766666699
Q ss_pred ceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHHHhCCeeecccc
Q 038104 250 GTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIELLGFHVTHAYG 329 (567)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~yG 329 (567)
+++++.+.+++..+++.++++++|++.++|+++..|.+........++++|.+++||+++++++.+.+...++++++.||
T Consensus 237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~YG 316 (517)
T 3r44_A 237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYA 316 (517)
T ss_dssp CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhcCCcEEEeec
Confidence 99999999999999999999999999999999999988766566678899999999999999999999977999999999
Q ss_pred ccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhh
Q 038104 330 LTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEA 409 (567)
Q Consensus 330 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~ 409 (567)
+||+++.++..... ........+|.|.++. .+++.|. ++..++.+ .|||+++|++++.||+++|+.
T Consensus 317 ~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~ 382 (517)
T 3r44_A 317 LTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIKSDILLKEYWNRPEA 382 (517)
T ss_dssp CGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEEETTSCSEETTCHHH
T ss_pred ccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEeCcchhhhhCCChhh
Confidence 99998776654311 1122345789999888 8889886 45555543 599999999999999999999
Q ss_pred hhhcccCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEee
Q 038104 410 TSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVK 489 (567)
Q Consensus 410 ~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~ 489 (567)
+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..|+.++++| +.
T Consensus 383 t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~ 461 (517)
T 3r44_A 383 TRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VA 461 (517)
T ss_dssp HHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EE
T ss_pred hHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-EC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999898888888 55
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 490 TNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 490 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
++. ..+.++|+++++++|+.|++|+.|+++++||+|++||++|++|++++.+-
T Consensus 462 ~~~-----~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 462 DQN-----EVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp CTT-----TCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred CCC-----CCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 544 57889999999999999999999999999999999999999999998764
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.5e-80 Score=652.18 Aligned_cols=515 Identities=34% Similarity=0.517 Sum_probs=402.3
Q ss_pred ccCCCCCHHHHHHHHHHHcCCceEEEe----CCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHh
Q 038104 9 ANYVPLSPLTFLKRAAAVYGNRTSIIY----EGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAV 84 (567)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~ 84 (567)
+...++|+.++|.++++++|+++|+++ .++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 445678999999999999999999994 4579999999999999999999999999999999999999999999999
Q ss_pred hhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHH
Q 038104 85 PMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYE 164 (567)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 164 (567)
+++|++++|++|.++.+++.++++.++++++|++.+..+.+.......+ ....++.++.... .+...|.
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~ 161 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK------TVQHFVVMDEKAP-----EGYLAYE 161 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS------SCCEEEESSSCCC-----TTCEEHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC------CccEEEEecCCCC-----cccccHH
Confidence 9999999999999999999999999999999999988777666544322 3345555543221 1234566
Q ss_pred HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhH--hhhhccCCCCCEEEEecchHhhhhHHHH
Q 038104 165 QFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLS--LILGWEMGSAPVYLWSLPMFHCNGWTFT 242 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 242 (567)
++....... ....++++++++|||||||.||+|.++|+++...... ....+++.++|+++..+|++|.+++...
T Consensus 162 ~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 237 (541)
T 1v25_A 162 EALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237 (541)
T ss_dssp HHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH
T ss_pred HHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHH
Confidence 655433221 2245679999999999999999999999999876655 2345678899999999999999998777
Q ss_pred HHHHhhCceeeeeCC-CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHHHhC
Q 038104 243 WGVAARGGTNVCLRN-TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIELLG 321 (567)
Q Consensus 243 ~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~ 321 (567)
+.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+.++.++
T Consensus 238 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~g 317 (541)
T 1v25_A 238 YAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMG 317 (541)
T ss_dssp HHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHTT
T ss_pred HHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHHHHhC
Confidence 888999999998864 6999999999999999999999999999887555556788999999999999999999997779
Q ss_pred CeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccch
Q 038104 322 FHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMK 401 (567)
Q Consensus 322 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~ 401 (567)
+++++.||+||++++++.+.....+...+..........+|.|+++. +++|+|. ++.+++.++++.|||+++||+++.
T Consensus 318 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g~~v~~ 395 (541)
T 1v25_A 318 VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKGPWITG 395 (541)
T ss_dssp CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEESTTSBS
T ss_pred CceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeCcchhc
Confidence 99999999999988776654332222222222223456889999998 9999996 567777543468999999999999
Q ss_pred hccCChhhhhhccc-CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCC
Q 038104 402 GYLKNEEATSQSFK-NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGE 480 (567)
Q Consensus 402 gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 480 (567)
||+++++.|.+.|. +|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..|+
T Consensus 396 GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~ 475 (541)
T 1v25_A 396 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQE 475 (541)
T ss_dssp SCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSE
T ss_pred cccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCc
Confidence 99999999999997 89999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceeEEEEeecCCCCCCCCCCHHHHHHHHHh-hCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHh
Q 038104 481 SPCAFISVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKN 546 (567)
Q Consensus 481 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~ 546 (567)
.++++|+.. +. ..+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.+
T Consensus 476 ~~~a~vv~~-~~-----~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 476 RPLAVVVPR-GE-----KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp EEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred eEEEEEEEC-CC-----CCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 999998876 32 4566789999998 899999999999999999999999999999998754
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.9e-79 Score=642.13 Aligned_cols=501 Identities=24% Similarity=0.371 Sum_probs=430.1
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 038104 11 YVPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAV 90 (567)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (567)
|++.|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCChHHHHHHHHhcCceEEEEcccch-----HHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHH
Q 038104 91 LNTINVRLDAKNVASILRHSEAKVFFVDCQYV-----QLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQ 165 (567)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 165 (567)
++|++|.++.+++.++++.++++++|++.... ..+.......+ ....++..++.. .+.+
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~----------~~~~ 165 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP------TLKNIIVAGEAE----------EFLP 165 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT------TCCCEEEESCCT----------TSEE
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC------CccEEEEcCCcc----------chhh
Confidence 99999999999999999999999999987642 22222222221 334444443211 1112
Q ss_pred HHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHH--HHH
Q 038104 166 FVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWT--FTW 243 (567)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~--~~~ 243 (567)
+...... ..+.....++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|.+++. .++
T Consensus 166 ~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 166 LEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp GGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHH
T ss_pred hhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHH
Confidence 2221111 1111235678999999999999999999999999998888887788899999999999999999987 478
Q ss_pred HHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-HhCC
Q 038104 244 GVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LLGF 322 (567)
Q Consensus 244 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~ 322 (567)
.+++.|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+++. .+++
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 324 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 889999999999999999999999999999999999999999887555556789999999999999999999998 5799
Q ss_pred eeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchh
Q 038104 323 HVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKG 402 (567)
Q Consensus 323 ~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g 402 (567)
++++.||+||++..+... ..........+|.|+++...++|+|. .+.+++.| +.|||+++||+++.|
T Consensus 325 ~~~~~YG~TE~~~~~~~~----------~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~G 391 (539)
T 1mdb_A 325 TLQQVFGMAEGLVNYTRL----------DDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGPYTIRG 391 (539)
T ss_dssp EEEEEEECTTSCEEECCT----------TSCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECTTSCSS
T ss_pred cEEEEEcCCCCcccccCC----------CCcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCcccchh
Confidence 999999999964322211 01112234678999977657899986 67788877 889999999999999
Q ss_pred ccCChhhhhhccc-CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCc
Q 038104 403 YLKNEEATSQSFK-NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGES 481 (567)
Q Consensus 403 y~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~ 481 (567)
|+++++.|.+.|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.
T Consensus 392 Y~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~ 471 (539)
T 1mdb_A 392 YYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGER 471 (539)
T ss_dssp CTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEE
T ss_pred hcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCce
Confidence 9999999999995 899999999999999999999999999999999999999999999999999999999999988999
Q ss_pred eeEEEEeecCCCCCCCCCCHHHHHHHHHhh-CCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 482 PCAFISVKTNSAGKTDDVNEADILSYCREN-LSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 482 ~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~-l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
++++|+.... ..+.++|+++++++ |+.|++|+.|+++++||+|++||++|++|++++.+.
T Consensus 472 ~~a~vv~~~~------~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 472 SCVFIIPRDE------APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp EEEEEEESSS------CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEEEECCC------CCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 9999987632 46789999999997 999999999999999999999999999999988764
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=2.1e-78 Score=636.50 Aligned_cols=503 Identities=21% Similarity=0.301 Sum_probs=434.9
Q ss_pred CCHHH-HHHHHHHHcCCceEEEe--CCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 038104 14 LSPLT-FLKRAAAVYGNRTSIIY--EGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAV 90 (567)
Q Consensus 14 ~tl~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (567)
+|+.+ ++.++++++ +++|+++ .++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58999 899999999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcC
Q 038104 91 LNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMG 170 (567)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
++|+++.++.+++.++++.++++++|++.+..+.+.......+ ....++.++.... ..+...|.++....
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 173 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT------TIKTIVILDSKVD----YRGYQCLDTFIKRN 173 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST------TCCEEEETTCSSC----BTTBCBHHHHHHHT
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC------CCCEEEEeCCccc----ccccccHHHHHhcC
Confidence 9999999999999999999999999999988777666544322 2345555443210 01223566666544
Q ss_pred CCCCCCCCCC------CCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhh---ccCCCCCEEEEecchHhhhhHHH
Q 038104 171 DPRFLPEEIH------DEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILG---WEMGSAPVYLWSLPMFHCNGWTF 241 (567)
Q Consensus 171 ~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~ 241 (567)
.....+.... .++++++++|||||||.||+|.++|+++.......... +++.++|+++..+|++|.+|+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 253 (548)
T 2d1s_A 174 TPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFT 253 (548)
T ss_dssp SCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHH
T ss_pred ccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHH
Confidence 2221111111 23899999999999999999999999998877776655 67889999999999999999876
Q ss_pred -HHHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-H
Q 038104 242 -TWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-L 319 (567)
Q Consensus 242 -~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~ 319 (567)
++.++ .|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+.+. .
T Consensus 254 ~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~ 332 (548)
T 2d1s_A 254 TLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARR 332 (548)
T ss_dssp HHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHH
Confidence 45555 99999999989999999999999999999999999999987666666789999999999999999999998 5
Q ss_pred h-CCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCc
Q 038104 320 L-GFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSS 398 (567)
Q Consensus 320 ~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~ 398 (567)
+ ++++++.||+||++..++.+... ......+|.|+++. .++|+|.+++.+++.| +.|||+++|++
T Consensus 333 ~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~ 398 (548)
T 2d1s_A 333 FNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVCVKGPM 398 (548)
T ss_dssp TTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEEEESTT
T ss_pred cCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEEECCHH
Confidence 5 68899999999998766553210 12235789999998 9999997788888887 88999999999
Q ss_pred cchhccCChhhhhhcc-cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCC
Q 038104 399 IMKGYLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQ 477 (567)
Q Consensus 399 ~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~ 477 (567)
++.||+++++.+.+.| .+|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++.
T Consensus 399 v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~ 478 (548)
T 2d1s_A 399 LMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPV 478 (548)
T ss_dssp SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred HhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC
Confidence 9999999999999999 489999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCcccc-EEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 478 WGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPK-KVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 478 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
.|+.++++|+..++. ..+.++|+++++++|+.|+.|. .|+++++||+|++||++|++|++++.+.
T Consensus 479 ~g~~~~a~vv~~~~~-----~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 479 AGELPGAVVVLESGK-----NMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp TEEEEEEEEEECTTC-----CCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred CCeeeEEEEEEcCCC-----CCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 899999999987664 5678999999999999999999 9999999999999999999999988754
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.3e-79 Score=633.18 Aligned_cols=492 Identities=23% Similarity=0.349 Sum_probs=428.4
Q ss_pred HHHHHHHHHcCCceEEE---eCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeec
Q 038104 18 TFLKRAAAVYGNRTSII---YEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTI 94 (567)
Q Consensus 18 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 94 (567)
++|.+.++++|+++++. +.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 47889999999999888 466899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcCCCCC
Q 038104 95 NVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRF 174 (567)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++.++.+++.++++.++++++|++.+....+.+...... ..+..++.... ..+.+........
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~--------~~~~~~~~~~~~~- 146 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG--------ATVETLGPDGR--------GSLTDAAAGASEA- 146 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT--------CEEEECCTTSC--------SHHHHHHHTSCSC-
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC--------ceEEEecCCcc--------cccchhhhcCCCC-
Confidence 999999999999999999999999887666555544321 23333332111 1222222222222
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHH-HHHHHhhCceee
Q 038104 175 LPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF-TWGVAARGGTNV 253 (567)
Q Consensus 175 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~~ 253 (567)
.+.....++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|.+|+.. .+.+++.|++++
T Consensus 147 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 226 (503)
T 4fuq_A 147 FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMI 226 (503)
T ss_dssp CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence 2222356789999999999999999999999999999988888899999999999999999999754 677889999999
Q ss_pred eeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-HhCCeeeccccccc
Q 038104 254 CLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LLGFHVTHAYGLTE 332 (567)
Q Consensus 254 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~yG~tE 332 (567)
+.+.+++..+++.++ ++|++.++|+++..+++........++++|.+++||+++++++.+.+. .+++++++.||+||
T Consensus 227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE 304 (503)
T 4fuq_A 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTE 304 (503)
T ss_dssp ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETT
T ss_pred EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccc
Confidence 999999999999998 899999999999999988776777789999999999999999999998 56999999999999
Q ss_pred cCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhhhh
Q 038104 333 ATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQ 412 (567)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~ 412 (567)
++..+.... ........+|.|+++. .++|+|.+++.+++.| +.|||+++|++++.||+++++.+.+
T Consensus 305 ~~~~~~~~~-----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~ 370 (503)
T 4fuq_A 305 TNMNTSNPY-----------DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKS 370 (503)
T ss_dssp TEECBCCCS-----------SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHH
T ss_pred cCcccccCC-----------CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHh
Confidence 986643211 1112235689999998 9999998888999888 8899999999999999999999999
Q ss_pred ccc-CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecC
Q 038104 413 SFK-NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTN 491 (567)
Q Consensus 413 ~~~-~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~ 491 (567)
.|. +|||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..|+.++++|+..++
T Consensus 371 ~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~ 450 (503)
T 4fuq_A 371 EFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKG 450 (503)
T ss_dssp TBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTT
T ss_pred hhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCC
Confidence 997 8999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 492 SAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 492 ~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
. ..+.++++++++++|+.|++|..|+++++||+|++||++|++|+++++++
T Consensus 451 ~-----~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 451 A-----TIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp C-----CCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred C-----CCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 5 67889999999999999999999999999999999999999999998765
No 8
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.5e-79 Score=645.05 Aligned_cols=506 Identities=22% Similarity=0.341 Sum_probs=342.3
Q ss_pred cCCCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccc
Q 038104 10 NYVPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEA 89 (567)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (567)
.|.+.|+.++|+++++++|+++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Ga 105 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGV 105 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCChHHHHHHHHhcCceEEEEcccch-----HHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHH
Q 038104 90 VLNTINVRLDAKNVASILRHSEAKVFFVDCQYV-----QLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYE 164 (567)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 164 (567)
+++|+++.++.+++.++++.++++++|++.... ........... ....++..+... ....+.
T Consensus 106 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-------~~~~~~ 172 (544)
T 3o83_A 106 VVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL------SPEIILMLNHQA-------TDFGLL 172 (544)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC------CCSEEEEETCCT-------TSEEHH
T ss_pred EEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc------CcceEEEecCCc-------cccchh
Confidence 999999999999999999999999999987653 22222222111 334444444321 112344
Q ss_pred HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHH--H
Q 038104 165 QFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF--T 242 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~--~ 242 (567)
++.........+.....++++++++|||||||.||+|.++|+++...+......+++.++|++++.+|++|.+++.. +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 252 (544)
T 3o83_A 173 DWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGA 252 (544)
T ss_dssp HHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHH
Confidence 44444333332223456789999999999999999999999999999988888889999999999999999998873 7
Q ss_pred HHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-HhC
Q 038104 243 WGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LLG 321 (567)
Q Consensus 243 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~ 321 (567)
+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+.+. .++
T Consensus 253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~ 332 (544)
T 3o83_A 253 LGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN 332 (544)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC
T ss_pred HHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC
Confidence 8888999999999999999999999999999999999999999987766667889999999999999999999998 569
Q ss_pred CeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccch
Q 038104 322 FHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMK 401 (567)
Q Consensus 322 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~ 401 (567)
+++++.||+||++..+.... .........+|.|+.+...++|+|. ++.+++.| +.|||+++||+++.
T Consensus 333 ~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~~v~~ 399 (544)
T 3o83_A 333 CKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDDEIKIVDE-QYREVPEG--EIGMLATRGPYTFC 399 (544)
T ss_dssp SEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEEEECTTSCS
T ss_pred CcEEeeeccccccceeecCC----------CchhhccCCCceecCCCcEEEEECC-CCCCCCCC--CeeEEEEecCCcch
Confidence 99999999999874433221 1222334678999743338999984 77888887 88999999999999
Q ss_pred hccCChhhhhhcc-cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCC
Q 038104 402 GYLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGE 480 (567)
Q Consensus 402 gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 480 (567)
||+++++.+.+.| .+|||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..|+
T Consensus 400 GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~ 479 (544)
T 3o83_A 400 GYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGE 479 (544)
T ss_dssp CCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC----------------------------------------
T ss_pred hhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCc
Confidence 9999999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEeecCCCCCCCCCCHHHHHHHHHh-hCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 481 SPCAFISVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 481 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
.++++|+..+. ..+..++++++++ .|+.|++|..++++++||+|++||++|++|++++.+.
T Consensus 480 ~~~a~vv~~~~------~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 480 KSCAFIVSRNP------ELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEEeCCC------CCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 99999987653 4567789999988 7999999999999999999999999999999988754
No 9
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.4e-79 Score=641.25 Aligned_cols=498 Identities=26% Similarity=0.420 Sum_probs=337.6
Q ss_pred ccCCCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhcc
Q 038104 9 ANYVPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAE 88 (567)
Q Consensus 9 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 88 (567)
|.++++|+.++|+++|+++||++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 1 ms~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 80 (509)
T 3ivr_A 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIG 80 (509)
T ss_dssp -CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred CCCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHh
Q 038104 89 AVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQ 168 (567)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 168 (567)
++++|+++.++.+++.++++.++++++|++.+....+........ ....++.+++.. ..+.++..
T Consensus 81 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---------~~~~~~~~ 145 (509)
T 3ivr_A 81 AILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG------GVKKAYAIGDGS---------GPFAPFKD 145 (509)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS------SCCEEEESSCCC---------SSCEEGGG
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC------CceEEEEcCCCC---------cChhhHhh
Confidence 999999999999999999999999999999988777555544332 345555554321 11222222
Q ss_pred cCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhh
Q 038104 169 MGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAAR 248 (567)
Q Consensus 169 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~ 248 (567)
.......+.....++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|.+|+...+..++.
T Consensus 146 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~ 225 (509)
T 3ivr_A 146 LASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQA 225 (509)
T ss_dssp TCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHh
Confidence 11222222234667899999999999999999999999999998888888999999999999999999999888887888
Q ss_pred CceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CCeeec
Q 038104 249 GGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GFHVTH 326 (567)
Q Consensus 249 g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~~i~~ 326 (567)
|++.++...+++..+++.|+++++|++.++|+++..|++.. ....+++++.++.+|++ +..+.+. .+ ++++++
T Consensus 226 ~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~ 300 (509)
T 3ivr_A 226 GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA 300 (509)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE
T ss_pred CCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEc
Confidence 88888877899999999999999999999999999999876 44677899999999987 7777777 55 899999
Q ss_pred cccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCC
Q 038104 327 AYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKN 406 (567)
Q Consensus 327 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~ 406 (567)
.||+||++++++.+.... ....+|.|+++. .++|+|. .+.+++.| +.|||+++|++++.||+++
T Consensus 301 ~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY~~~ 364 (509)
T 3ivr_A 301 TFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVFKGYWNN 364 (509)
T ss_dssp EEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCEETTC
T ss_pred ccCccccccccccCcccc------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCccccccCC
Confidence 999999997776543211 112389999998 9999997 47888887 8899999999999999999
Q ss_pred hhhhhhcccCCcccCCceEEEecCCcEEEEccC--CceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeE
Q 038104 407 EEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRS--KDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCA 484 (567)
Q Consensus 407 ~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 484 (567)
++.+.+.|.+|||+|||+|+++++|++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++++++..|+.+++
T Consensus 365 ~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 444 (509)
T 3ivr_A 365 AAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKA 444 (509)
T ss_dssp HHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred HHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEE
Confidence 999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 485 FISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 485 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
+|+..++. ..+.++|+++++++|+.|++|+.|+++++||+|++||++|++|++++.+.
T Consensus 445 ~v~~~~~~-----~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 445 VCVCKPGE-----SIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEeCCCC-----CCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99987765 56778999999999999999999999999999999999999999998775
No 10
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.1e-79 Score=647.43 Aligned_cols=513 Identities=22% Similarity=0.318 Sum_probs=343.2
Q ss_pred ccccCCCCCHHHHHHHHHHHcCCceEEE---e--CCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHH
Q 038104 7 CEANYVPLSPLTFLKRAAAVYGNRTSII---Y--EGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMH 81 (567)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~ 81 (567)
+..++++.|+.++|.++++++|+++|++ + .++++||+||.++++++|++|.++|+++||+|+|+++|++++++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 92 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV 92 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence 4566788999999999999999999976 3 3579999999999999999999999999999999999999999999
Q ss_pred HHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcc
Q 038104 82 FAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEF 161 (567)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 161 (567)
|||+++|++++|+++.++.+++.++++.++++++|++.+....+.......+ ....++.++.... ..+..
T Consensus 93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~ 162 (550)
T 3rix_A 93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP------IIQKIIIMDSKTD----YQGFQ 162 (550)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT------TCCEEEETTCSSC----BTTBC
T ss_pred HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC------CcceEEEEcCCcc----ccCcc
Confidence 9999999999999999999999999999999999999998888777665543 4456665544321 12334
Q ss_pred cHHHHHhcCCCC------CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhh---ccCCCCCEEEEecc
Q 038104 162 EYEQFVQMGDPR------FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILG---WEMGSAPVYLWSLP 232 (567)
Q Consensus 162 ~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~---~~~~~~d~~~~~~p 232 (567)
.+.++....... ..+.....++++++++|||||||.||+|.++|+++.......... +++.++|+++..+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 555555433221 112222345789999999999999999999999998777665544 56889999999999
Q ss_pred hHhhhhHHHHHHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHH
Q 038104 233 MFHCNGWTFTWGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPAS 312 (567)
Q Consensus 233 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~ 312 (567)
++|.+|+...+.+++.|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||++++++
T Consensus 243 ~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~ 322 (550)
T 3rix_A 243 FHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE 322 (550)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHH
Confidence 99999998888899999999999999999999999999999999999999999998777777899999999999999999
Q ss_pred HHHHHH-HhCCe-eeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCccee
Q 038104 313 LLEEIE-LLGFH-VTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG 390 (567)
Q Consensus 313 ~~~~~~-~~~~~-i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~G 390 (567)
+.+.+. .++.. +++.||+||+++.++.+... ......+|.|+++. +++|+|.+++.+++.| +.|
T Consensus 323 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g--~~G 388 (550)
T 3rix_A 323 VGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN--QRG 388 (550)
T ss_dssp HHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBCCTT--CCE
T ss_pred HHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCCCCC--CCe
Confidence 999998 56764 89999999999777654321 11235689999998 9999998888888888 889
Q ss_pred EEEEecCccchhccCChhhhhhcc-cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEE
Q 038104 391 EIVLRGSSIMKGYLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAA 469 (567)
Q Consensus 391 el~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 469 (567)
||+++|++++.||+++++.+.+.| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 389 El~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (550)
T 3rix_A 389 ELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAG 468 (550)
T ss_dssp EEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC---------------------------------
T ss_pred EEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEE
Confidence 999999999999999999999999 5899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCcccc-EEEEeCCCCCCCCCccchHHHHHHHHhhh
Q 038104 470 VVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPK-KVVILPELPKTATGKIQKFQLRALAKNFA 548 (567)
Q Consensus 470 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~-~i~~v~~~P~t~~GKv~r~~l~~~~~~~~ 548 (567)
|++++++..|+.++++|+..++. ..+.++++++++++++.|+.|. .++++++||+|++||++|++|++++.+..
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~~-----~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 469 VAGLPDDDAGELPAAVVVLEHGK-----TMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCceEEEEEEecCCC-----CCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 99999999999999999988765 5677899999999999886554 69999999999999999999999987643
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3e-77 Score=630.47 Aligned_cols=505 Identities=17% Similarity=0.224 Sum_probs=414.4
Q ss_pred CCCHH-HHHHHHHHHcCCceEEEeC-----CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhh
Q 038104 13 PLSPL-TFLKRAAAVYGNRTSIIYE-----GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPM 86 (567)
Q Consensus 13 ~~tl~-~~l~~~a~~~p~~~a~~~~-----~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 86 (567)
..|+. ++|+++|+++||++|+++. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 45676 9999999999999999972 36899999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccCCCChHHHHHHHHhcCceEEEEcccch--HHHHHHhhhhhccccCCCC-CeEEEEeCCCCCCCccCCcccH
Q 038104 87 AEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYV--QLAREALKLYFVEDRDAAG-PRVILIDDIDSPTGIRFGEFEY 163 (567)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~ 163 (567)
+|++++|+++.++.+++.++++.++++++|++.+.. ..+.+.....+ .. ..++.++... ..+...+
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~ 202 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG------DIPLKKAKVGGDV-----LEGWIDF 202 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC------SCCCEEEEESSSC-----CTTCEEH
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC------CcceEEEEeCCcc-----ccccccH
Confidence 999999999999999999999999999999988754 55655554443 22 4455554321 2234567
Q ss_pred HHHHhcCCCCCCCC---CCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHH
Q 038104 164 EQFVQMGDPRFLPE---EIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWT 240 (567)
Q Consensus 164 ~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~ 240 (567)
.+...........+ ....++++++++|||||||.||+|.++|.+++.........+++.++++++...|++|..++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (580)
T 3etc_A 203 RKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVW 282 (580)
T ss_dssp HHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHH
T ss_pred HHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHH
Confidence 77666554433222 235678999999999999999999999999887777766677889999999999999988776
Q ss_pred H-HHHHHhhCceeeee--CCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHH
Q 038104 241 F-TWGVAARGGTNVCL--RNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEI 317 (567)
Q Consensus 241 ~-~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~ 317 (567)
. ++.++..|+++++. ..+++..+++.|+++++|++.++|++++.|++. ......++++|.+++|||++++++.+++
T Consensus 283 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 361 (580)
T 3etc_A 283 GKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRF 361 (580)
T ss_dssp HTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHH
Confidence 4 67788889988887 568999999999999999999999999999876 3344678899999999999999999999
Q ss_pred H-HhCCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEec
Q 038104 318 E-LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRG 396 (567)
Q Consensus 318 ~-~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~ 396 (567)
. .+++++++.||+||++..++..... ......+|.|+++. .++|+|. ++.+++.| +.|||+++|
T Consensus 362 ~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v~~ 426 (580)
T 3etc_A 362 LEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVINT 426 (580)
T ss_dssp HHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEEC
T ss_pred HHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEEec
Confidence 8 5699999999999998665543211 12235789999998 9999997 57888887 889999997
Q ss_pred -----CccchhccCChhhhhhcccCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEE
Q 038104 397 -----SSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVV 471 (567)
Q Consensus 397 -----~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~ 471 (567)
+.++.||+++|+.+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||.+|.++|+|.+++|+
T Consensus 427 ~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vv 506 (580)
T 3etc_A 427 MEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAIT 506 (580)
T ss_dssp TTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEE
T ss_pred CCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHh
Q 038104 472 AMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKN 546 (567)
Q Consensus 472 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~ 546 (567)
+++++..|+.++++|++.++... .....++|++++++.|+.|++|..|+++++||+|++||++|++|++++.+
T Consensus 507 g~~~~~~g~~~~a~vv~~~~~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 507 GVPDPVRGQVIKATIVLTKDYTP--SDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEETTTEEEEEEEEEECTTCCC--CHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred eeeccCCCcEEEEEEEECCCCCC--CHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 99999999999999999876421 12234789999999999999999999999999999999999999998753
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.7e-77 Score=624.24 Aligned_cols=484 Identities=26% Similarity=0.395 Sum_probs=412.5
Q ss_pred CCHHHHHHHHHHHcCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhcccee
Q 038104 14 LSPLTFLKRAAAVYGNRTSIIYE--GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVL 91 (567)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (567)
+|+.++|+++++++||++|+.+. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 48999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHHhcCceEEEE--cccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhc
Q 038104 92 NTINVRLDAKNVASILRHSEAKVFFV--DCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQM 169 (567)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 169 (567)
+|+++.++.+++.++++.++++++++ +.+..+.+... . ....++.++ ++...
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~-------~~~~~~~~~----------------~~~~~ 135 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---G-------SGARIIFLG----------------DLVRD 135 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHH---C-------CCCEEEEGG----------------GTEET
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhc---c-------ccceeEEec----------------chhhc
Confidence 99999999999999999999999999 76654433111 1 111222211 11111
Q ss_pred C----CCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccC--CCCCEEEEecchHhhhhHH-HH
Q 038104 170 G----DPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEM--GSAPVYLWSLPMFHCNGWT-FT 242 (567)
Q Consensus 170 ~----~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~-~~ 242 (567)
. .....+.....++++++++|||||||.||+|.++|+++..........+++ +++|+++..+|++|.+|+. .+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~ 215 (504)
T 1t5h_X 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVL 215 (504)
T ss_dssp TEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTH
T ss_pred CcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHH
Confidence 0 000111123456899999999999999999999999998888777777777 8899999999999999984 57
Q ss_pred HHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCC--cccccCCCceEEEEcCCCCCHHHHHHHH-H
Q 038104 243 WGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKP--EERKEIASPVQILTGGAPPPASLLEEIE-L 319 (567)
Q Consensus 243 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~--~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~ 319 (567)
+.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++... .....++++|.+++||+++++++.+.+. .
T Consensus 216 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 216 VAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred HHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 888999999999999999999999999999999999999999987642 2345678999999999999999999998 5
Q ss_pred hCCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCC--CCcCCCCcceeEEEEe-c
Q 038104 320 LGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTM--SSVPRDGKTMGEIVLR-G 396 (567)
Q Consensus 320 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~--~~~~~~~~~~Gel~v~-~ 396 (567)
+++++++.||+||++ .+.... .......|.|.++. ++++++.+.. .+++.| +.|||+++ |
T Consensus 296 ~~~~~~~~YG~TE~~-~~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~GEl~v~gg 358 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAM-NSLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEGELIVAAS 358 (504)
T ss_dssp CCSEEEEEEEETTTE-EEEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCEEEEEECC
T ss_pred cCcceeeeecccccc-cccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--CcceEEEeCC
Confidence 589999999999993 222111 01224578888887 8999986443 666666 88999999 8
Q ss_pred CccchhccCChhhhhhcccCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCC
Q 038104 397 SSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP 476 (567)
Q Consensus 397 ~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~ 476 (567)
+.++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 359 ~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 438 (504)
T 1t5h_X 359 DSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438 (504)
T ss_dssp TTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECS
T ss_pred ceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHh-hCCCCccccEEEEeCCCCCCCCCccchHHHHHHHH
Q 038104 477 QWGESPCAFISVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLRALAK 545 (567)
Q Consensus 477 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~ 545 (567)
..|+.++++|+..++. ..+.+++++++++ +|+.|++|+.++++++||+|++||++|++|++++.
T Consensus 439 ~~g~~~~a~vv~~~~~-----~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 439 RWGQSVTACVVPRLGE-----TLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp SSSEEEEEEEEECTTC-----CCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred CCCcEEEEEEEecCCc-----CcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999999987664 5678999999998 99999999999999999999999999999998764
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.1e-77 Score=621.68 Aligned_cols=500 Identities=19% Similarity=0.200 Sum_probs=420.3
Q ss_pred CCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeee
Q 038104 14 LSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNT 93 (567)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (567)
||+.++|+++|+++||++|+++.++++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcC-CC
Q 038104 94 INVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMG-DP 172 (567)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 172 (567)
+++.++.+++.++++.+++++++++...... . ....++.. ..+.++.... ..
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~--------~~~~~~~~-------------~~~~~~~~~~~~~ 133 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------D--------LPVRIVSE-------------DNLKDIFFTHKGN 133 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------C--------CSSEEEET-------------HHHHHHHHHTTTC
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc------c--------cccceech-------------hhhhhhccccccc
Confidence 9999999999999999999999997542110 0 00111110 1122222211 12
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCcee
Q 038104 173 RFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTN 252 (567)
Q Consensus 173 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~ 252 (567)
...+.....++++++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|..++..++.+++.|+++
T Consensus 134 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~ 213 (512)
T 3fce_A 134 TPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTL 213 (512)
T ss_dssp CCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEE
T ss_pred CCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEE
Confidence 22223345678999999999999999999999999999888888888999999999999999999988889999999999
Q ss_pred eeeCC---CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CCeeecc
Q 038104 253 VCLRN---TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GFHVTHA 327 (567)
Q Consensus 253 ~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~~i~~~ 327 (567)
++.+. .++..+++.++++++|++.++|+++..++.........++++|.+++||+++++++.+.+. .+ ++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~ 293 (512)
T 3fce_A 214 WAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT 293 (512)
T ss_dssp EECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeC
Confidence 99876 6899999999999999999999999999888776777889999999999999999999998 45 8999999
Q ss_pred ccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCCh
Q 038104 328 YGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNE 407 (567)
Q Consensus 328 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 407 (567)
||+||+++.++....... .........+|.|.++. .++++|. ++.+++.| +.|||+++||+++.||++++
T Consensus 294 YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~ 363 (512)
T 3fce_A 294 YGPTEATVAVTGIHVTEE------VLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVSVGYLGSP 363 (512)
T ss_dssp ECCGGGSSCSEEEECCHH------HHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSCSCBTTCH
T ss_pred cccChhhhheeeEEeccc------cccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccChhhcCCc
Confidence 999999887765432111 01112334678999888 8899985 67888877 88999999999999999999
Q ss_pred hhhhhccc----CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCcee
Q 038104 408 EATSQSFK----NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483 (567)
Q Consensus 408 ~~~~~~~~----~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 483 (567)
+.+.+.|. ++||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++
T Consensus 364 ~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 442 (512)
T 3fce_A 364 ELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLL 442 (512)
T ss_dssp HHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEE
T ss_pred hhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEE
Confidence 99999984 569999999999 7999999999999999999999999999999999999999999999988888999
Q ss_pred EEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhhhcccc
Q 038104 484 AFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNFAVSKD 552 (567)
Q Consensus 484 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~~~~~~ 552 (567)
++|+..++.... .....++|+++++++|+.|++|+.++++++||+|++||++|++|++.+.+...+.+
T Consensus 443 a~vv~~~~~~~~-~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 443 AVVVPGEHSFEK-EFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp EEEEECSCCCSS-HHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred EEEecCCccccc-hhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 999887654110 00113579999999999999999999999999999999999999999988755544
No 14
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.7e-76 Score=615.27 Aligned_cols=499 Identities=19% Similarity=0.225 Sum_probs=429.0
Q ss_pred CCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCChHHHHHHHHHhhhccceee
Q 038104 14 LSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSL-NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLN 92 (567)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 92 (567)
||+.++|+++|+++|+++|+++.++++||+||.++++++|++|.+. |.++||+|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999875 889999999999999999999999999999999
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcCCC
Q 038104 93 TINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDP 172 (567)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (567)
|+++.++.+++.++++.++++++|++...... ... .......+.++......
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~---------------~~~-------------~~~~~~~~~~~~~~~~~ 132 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID---------------AVG-------------QQIQTVSAEELLENEGG 132 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT---------------CCC-------------CSSCEEEHHHHHTSCSC
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch---------------hcc-------------cccceecHhhhhccccC
Confidence 99999999999999999999999996543110 000 00112344455444333
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCcee
Q 038104 173 RFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTN 252 (567)
Q Consensus 173 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~ 252 (567)
...+.....++++++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|..++..++.++..|+++
T Consensus 133 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~ 212 (511)
T 3e7w_A 133 SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTL 212 (511)
T ss_dssp CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEE
Confidence 33333345678999999999999999999999999999888888888999999999999999999988888999999999
Q ss_pred eeeCC---CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CCeeecc
Q 038104 253 VCLRN---TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GFHVTHA 327 (567)
Q Consensus 253 ~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~~i~~~ 327 (567)
++.+. .++..+++.++++++|++.++|+++..++.........+++++.+++||+++++++.+.+. .+ ++++++.
T Consensus 213 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~ 292 (511)
T 3e7w_A 213 HCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT 292 (511)
T ss_dssp EECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEC
T ss_pred EEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeC
Confidence 99876 6889999999999999999999999999988766677889999999999999999999998 45 8999999
Q ss_pred ccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCCh
Q 038104 328 YGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNE 407 (567)
Q Consensus 328 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 407 (567)
||+||+++.++.+....... .......+|.|.++. +++|+|. ++.+++.| +.|||+++|++++.||++++
T Consensus 293 YG~TE~~~~~~~~~~~~~~~------~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~~~~ 362 (511)
T 3e7w_A 293 YGPTEATVAVTSVEITNDVI------SRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVSRGYLGEP 362 (511)
T ss_dssp CCCGGGSSCSEEEEECHHHH------TTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCCBTTCH
T ss_pred cccchheeeeeEEecccccc------ccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccChhhCCCc
Confidence 99999998776543221110 111224589999998 9999996 57888887 88999999999999999999
Q ss_pred hhhhhccc--CC--cccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCcee
Q 038104 408 EATSQSFK--NG--WFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPC 483 (567)
Q Consensus 408 ~~~~~~~~--~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~ 483 (567)
+.+.+.|. +| ||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.++
T Consensus 363 ~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~ 441 (511)
T 3e7w_A 363 ELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLI 441 (511)
T ss_dssp HHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEE
T ss_pred ccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEE
Confidence 99999983 34 7999999999 5999999999999999999999999999999999999999999999988899999
Q ss_pred EEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhhhcccc
Q 038104 484 AFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNFAVSKD 552 (567)
Q Consensus 484 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~~~~~~ 552 (567)
++|+..++.... .....++|+++++++|+.|++|+.++++++||+|++||++|++|++.+.......|
T Consensus 442 a~vv~~~~~~~~-~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 509 (511)
T 3e7w_A 442 AAIVPEEHEFEK-EFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHHH 509 (511)
T ss_dssp EEEEECCCCCSS-HHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC-
T ss_pred EEEEeccccccc-hhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccccc
Confidence 999987654110 00113679999999999999999999999999999999999999999988755544
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.6e-76 Score=633.55 Aligned_cols=510 Identities=22% Similarity=0.307 Sum_probs=429.3
Q ss_pred CHHHHHHHHHHHcCCceEEEe------CCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhcc
Q 038104 15 SPLTFLKRAAAVYGNRTSIIY------EGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAE 88 (567)
Q Consensus 15 tl~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 88 (567)
++.++|+++++++||++|+++ .++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 467899999999999999998 23789999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccCCCChHHHHHHHHhcCceEEEEcccch---------HHHHHHhhhhhccccCCCCCeEEEEeCCCCCCC-ccC
Q 038104 89 AVLNTINVRLDAKNVASILRHSEAKVFFVDCQYV---------QLAREALKLYFVEDRDAAGPRVILIDDIDSPTG-IRF 158 (567)
Q Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-~~~ 158 (567)
++++|+++.++.+++.+++++++++++|++.... ..+.+++..... .....++.++....... ...
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~~~~~~~ 232 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV----TSVEHVIVLKRTGSDIDWQEG 232 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC----CSCCEEEEECSSCCCCCCCBT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc----CCCCEEEEEeCCCCcccccCC
Confidence 9999999999999999999999999999987642 334444332110 02356666654321111 112
Q ss_pred CcccHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhH-hhhhccCCCCCEEEEecchHhhh
Q 038104 159 GEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLS-LILGWEMGSAPVYLWSLPMFHCN 237 (567)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~-~~~~~~~~~~d~~~~~~p~~~~~ 237 (567)
....|.++........ +.....++++++++|||||||.||||+++|++++..... ....++++++|++++..|++|..
T Consensus 233 ~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 311 (652)
T 1pg4_A 233 RDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311 (652)
T ss_dssp TEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHH
T ss_pred CceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeee
Confidence 2456777776443322 222356789999999999999999999999998766643 44567899999999999999999
Q ss_pred hHHH-HHHHHhhCceeeeeCC----CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCc--ccccCCCceEEEEcCCCCC
Q 038104 238 GWTF-TWGVAARGGTNVCLRN----TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPE--ERKEIASPVQILTGGAPPP 310 (567)
Q Consensus 238 g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~~~~~g~~l~ 310 (567)
|+.+ ++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.|++.... ....++++|.+++|||+++
T Consensus 312 g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~ 391 (652)
T 1pg4_A 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPIN 391 (652)
T ss_dssp HHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCC
T ss_pred chHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCC
Confidence 9854 7889999999999875 5889999999999999999999999999886542 3346889999999999999
Q ss_pred HHHHHHHH-HhC---CeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCC
Q 038104 311 ASLLEEIE-LLG---FHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDG 386 (567)
Q Consensus 311 ~~~~~~~~-~~~---~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~ 386 (567)
+++.+++. .++ +++++.||+||+++.++..... ........+|.|+++. .++|+|. ++.+++.|
T Consensus 392 ~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~~s~G~p~~g~-~v~i~d~-~g~~v~~g- 459 (652)
T 1pg4_A 392 PEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDN-EGHPQEGA- 459 (652)
T ss_dssp HHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECT-TCCBCCSS-
T ss_pred HHHHHHHHHHhCCCCCcEEccccCcccccceecCCCC---------CcCccCCccccCcCCC-eEEEECC-CCCCcCCC-
Confidence 99999998 566 8999999999998766653211 0112235789999998 9999996 57777776
Q ss_pred cceeEEEEec--CccchhccCChhhhhhcc---cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHc
Q 038104 387 KTMGEIVLRG--SSIMKGYLKNEEATSQSF---KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFR 461 (567)
Q Consensus 387 ~~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 461 (567)
+.|||+++| |+++.||+++++.+.+.+ .+|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.+
T Consensus 460 -~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~ 538 (652)
T 1pg4_A 460 -TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA 538 (652)
T ss_dssp -EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred -ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 889999999 789999999999887776 37899999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCC---HHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchH
Q 038104 462 HPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVN---EADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKF 538 (567)
Q Consensus 462 ~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~ 538 (567)
+|+|.+++|++++++..|+.++++|++.++. ..+ .++|+++++++|+.|++|+.|+++++||+|++||++|+
T Consensus 539 ~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~-----~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~ 613 (652)
T 1pg4_A 539 HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE-----EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRR 613 (652)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEEEECTTC-----CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHH
T ss_pred CCCcceEEEEEEEcCCCCeEEEEEEEECCCC-----CCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHH
Confidence 9999999999999998899999999988764 222 57899999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 038104 539 QLRALAKNF 547 (567)
Q Consensus 539 ~l~~~~~~~ 547 (567)
.|++++.+.
T Consensus 614 ~L~~~~~~~ 622 (652)
T 1pg4_A 614 ILRKIAAGD 622 (652)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCC
Confidence 999998764
No 16
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.8e-76 Score=633.10 Aligned_cols=521 Identities=21% Similarity=0.312 Sum_probs=429.7
Q ss_pred ccCCC----CCHHHHHHHHHHHcCCceEEEe------CCeeeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCChHHH
Q 038104 9 ANYVP----LSPLTFLKRAAAVYGNRTSIIY------EGARFNWLQTYDRCRRLASSLR-SLNMPKHSVVSVLAPNIPAM 77 (567)
Q Consensus 9 ~~~~~----~tl~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~v~~la~~L~-~~g~~~gd~V~i~~~~~~~~ 77 (567)
..|.+ .++.++|+++++++||++|+++ .++++||+||.++++++|++|+ ++|+++||+|+|+++|++++
T Consensus 73 ~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~ 152 (663)
T 1ry2_A 73 NAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA 152 (663)
T ss_dssp CCBSTTCEECHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH
T ss_pred CCcCCCCCccHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH
Confidence 35654 3577899999999999999998 2478999999999999999999 99999999999999999999
Q ss_pred HHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccch---------HHHHHHhhhhhccccCCCCCeEEEEe
Q 038104 78 YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYV---------QLAREALKLYFVEDRDAAGPRVILID 148 (567)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ii~~~ 148 (567)
++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+.+++...+ ....+++++
T Consensus 153 v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~vi~~~ 226 (663)
T 1ry2_A 153 IITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP------GVRHVLVYR 226 (663)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT------TCCEEEEEC
T ss_pred HHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC------CCceEEEEe
Confidence 999999999999999999999999999999999999999987642 23334433222 345666665
Q ss_pred CCCC--CCCccCCcccHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhH-hhhhccCCCCC
Q 038104 149 DIDS--PTGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLS-LILGWEMGSAP 225 (567)
Q Consensus 149 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~-~~~~~~~~~~d 225 (567)
.... ..........|.++........ +.....++++++|+|||||||.||||+++|++++..... ....+++.++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d 305 (663)
T 1ry2_A 227 KTNNPSVAFHAPRDLDWATEKKKYKTYY-PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQED 305 (663)
T ss_dssp SSCCSSCCCCSSSEEEHHHHHTTSCSCC-CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSC
T ss_pred cCCCCccccCCCccccHHHHHhhcCCCC-CccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCc
Confidence 4321 1111123456777765443322 223356789999999999999999999999998766643 44567899999
Q ss_pred EEEEecchHhhhhHHH-HHHHHhhCceeeeeCC----CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCc--ccccCCC
Q 038104 226 VYLWSLPMFHCNGWTF-TWGVAARGGTNVCLRN----TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPE--ERKEIAS 298 (567)
Q Consensus 226 ~~~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~ 298 (567)
++++..|++|..|+.+ ++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.|.+.... ....+++
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~s 385 (663)
T 1ry2_A 306 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 385 (663)
T ss_dssp EEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTT
T ss_pred EEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCc
Confidence 9999999999999854 7889999999999864 5789999999999999999999999999876542 3456899
Q ss_pred ceEEEEcCCCCCHHHHHHHH-HhC---CeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEe
Q 038104 299 PVQILTGGAPPPASLLEEIE-LLG---FHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVK 374 (567)
Q Consensus 299 l~~~~~~g~~l~~~~~~~~~-~~~---~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~ 374 (567)
+|.+++|||++++++++++. .++ +++++.||+||+++.++..... + ........+|.|+++. .++|+
T Consensus 386 Lr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~-~-------~~~~~~gs~G~p~~g~-~v~i~ 456 (663)
T 1ry2_A 386 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG-G-------VTPMKPGSASFPFFGI-DAVVL 456 (663)
T ss_dssp CCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT-T-------CCCCCTTCCCEECTTC-CEEEE
T ss_pred eEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC-C-------CcccCCCccccCcCCC-eEEEE
Confidence 99999999999999999998 456 8999999999998776653210 0 0012235789999998 99999
Q ss_pred eCCCCCCcCC-CCcceeEEEEec--CccchhccCChhhhhhccc---CCcccCCceEEEecCCcEEEEccCCceeeeCce
Q 038104 375 NLDTMSSVPR-DGKTMGEIVLRG--SSIMKGYLKNEEATSQSFK---NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGE 448 (567)
Q Consensus 375 ~~~~~~~~~~-~~~~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~ 448 (567)
|.+++.+++. + +.|||+++| |+++.|||++++.+.+.|. +|||+|||+|++++||++++.||+||+||++|+
T Consensus 457 d~~~g~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~ 534 (663)
T 1ry2_A 457 DPNTGEELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGH 534 (663)
T ss_dssp CSSSTTCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSC
T ss_pred cCCCCCcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCE
Confidence 9767777776 5 789999999 5899999999999888763 789999999999999999999999999999999
Q ss_pred eechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecCCCCC-C-CC---CCHHHHHHHHHhhCCCCccccEEEE
Q 038104 449 NISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGK-T-DD---VNEADILSYCRENLSRFMVPKKVVI 523 (567)
Q Consensus 449 ~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~-~-~~---~~~~~l~~~~~~~l~~~~~p~~i~~ 523 (567)
+|+|.+||++|.++|+|.+++|++++++..|+.++++|++.++.... . .. ...++|+++++++++.|++|+.|++
T Consensus 535 rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~ 614 (663)
T 1ry2_A 535 RLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIIL 614 (663)
T ss_dssp CBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEE
T ss_pred EcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEE
Confidence 99999999999999999999999999998899999999987654100 0 00 2257899999999999999999999
Q ss_pred eCCCCCCCCCccchHHHHHHHHhh
Q 038104 524 LPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 524 v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
+++||+|++||++|+.|++++...
T Consensus 615 v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 615 VDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCCCCCccCchHHHHHHHHcCC
Confidence 999999999999999999987653
No 17
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=7.4e-76 Score=619.08 Aligned_cols=504 Identities=20% Similarity=0.266 Sum_probs=427.1
Q ss_pred CC-HHHHHHHHHHH-----cCCceEEEeC-----CeeeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCChHHHHHHH
Q 038104 14 LS-PLTFLKRAAAV-----YGNRTSIIYE-----GARFNWLQTYDRCRRLASSLRSL-NMPKHSVVSVLAPNIPAMYEMH 81 (567)
Q Consensus 14 ~t-l~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~v~~la~~L~~~-g~~~gd~V~i~~~~~~~~~~~~ 81 (567)
++ +.++|++++++ +||++|+++. ++++||+||.++++++|++|.+. |+++||+|+|+++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 44 46899999999 9999999972 37899999999999999999998 9999999999999999999999
Q ss_pred HHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcc
Q 038104 82 FAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEF 161 (567)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 161 (567)
|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.++....+ ....++.+++... .+..
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-----~~~~ 185 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP------SLRIKLLVSEKSC-----DGWL 185 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT------TCCEEEEESSSCC-----TTSE
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC------ceeEEEEecccCc-----cccc
Confidence 9999999999999999999999999999999999999988777766554332 3345555543211 1234
Q ss_pred cHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHH--HhhHhhhhccCCCCCEEEEecchHhhhhH
Q 038104 162 EYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYL--STLSLILGWEMGSAPVYLWSLPMFHCNGW 239 (567)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 239 (567)
.+.++......... .....++++++++|||||||.||+|.++|+ ++. ..... ..+++.++|+++...|++|..++
T Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~ 262 (570)
T 3c5e_A 186 NFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGWILNI 262 (570)
T ss_dssp EHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHH
T ss_pred cHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHH
Confidence 56666654433222 123567899999999999999999999999 444 33333 56788999999999999999998
Q ss_pred H-HHHHHHhhCceeeeeC--CCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHH
Q 038104 240 T-FTWGVAARGGTNVCLR--NTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEE 316 (567)
Q Consensus 240 ~-~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~ 316 (567)
. .++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..|++.. .....++++|.+++||+++++++.+.
T Consensus 263 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~ 341 (570)
T 3c5e_A 263 LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLEN 341 (570)
T ss_dssp HHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHH
Confidence 7 4778889999999886 689999999999999999999999999998763 23346789999999999999999999
Q ss_pred HH-HhCCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEe
Q 038104 317 IE-LLGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLR 395 (567)
Q Consensus 317 ~~-~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~ 395 (567)
+. .+++++++.||+||++..++..... ......+|.|+++. .++|+|. ++.+++.| +.|||+++
T Consensus 342 ~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G--~~GEl~v~ 406 (570)
T 3c5e_A 342 WRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDD-KGNVLPPG--TEGDIGIR 406 (570)
T ss_dssp HHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECT-TSCBCCTT--CCEEEEEE
T ss_pred HHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECC-CCCCCCCC--CCCeeEEe
Confidence 98 5799999999999998654432110 11235789999998 9999996 57888887 88999999
Q ss_pred -----cCccchhccCChhhhhhcccCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEE
Q 038104 396 -----GSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAV 470 (567)
Q Consensus 396 -----~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v 470 (567)
|++++.||+++++.+.+.|.++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|
T Consensus 407 ~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~V 486 (570)
T 3c5e_A 407 VKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAV 486 (570)
T ss_dssp CSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred ccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 471 VAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 471 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
++.+++..|+.++++|+..++..........++|+++++++|+.|++|+.|+++++||+|++||++|++|++++.+.
T Consensus 487 v~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 487 ISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp EEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred EeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 99999988999999999876531100112357899999999999999999999999999999999999999987543
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.5e-75 Score=623.64 Aligned_cols=502 Identities=25% Similarity=0.371 Sum_probs=430.6
Q ss_pred cCCCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccc
Q 038104 10 NYVPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEA 89 (567)
Q Consensus 10 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (567)
-|+++|+.++|.++++ ||++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 4678999999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCChHHHHHHHHhcCceEEEEcccch-----HHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHH
Q 038104 90 VLNTINVRLDAKNVASILRHSEAKVFFVDCQYV-----QLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYE 164 (567)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 164 (567)
+++|+++.++.+++.++++.+++++++++.... ..+........ ....+...+... ...+.
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--------~~~~~ 166 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS------SIRVVQLLNDSG--------EHNLQ 166 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST------TCCEEEEETCCS--------TTBHH
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC------ccceeeeccccc--------ccchh
Confidence 999999999999999999999999999987653 22233222221 333444433321 12344
Q ss_pred HHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHH--H
Q 038104 165 QFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF--T 242 (567)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~--~ 242 (567)
+.......... .....++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|.+++.. +
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~ 245 (617)
T 3rg2_A 167 DAINHPAEDFT-ATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGS 245 (617)
T ss_dssp HHHHSCCSSCC-CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHH
T ss_pred hhhcccccccC-CCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHH
Confidence 44443332222 22356789999999999999999999999999999988888889999999999999999998864 7
Q ss_pred HHHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCc--ccccCCCceEEEEcCCCCCHHHHHHHH-H
Q 038104 243 WGVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPE--ERKEIASPVQILTGGAPPPASLLEEIE-L 319 (567)
Q Consensus 243 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~l~~l~~~~~~g~~l~~~~~~~~~-~ 319 (567)
+.+++.|+++++.+..++..+++.++++++|++.++|+++..+++.... ....++++|.+++|||++++++.+++. .
T Consensus 246 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 325 (617)
T 3rg2_A 246 LGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325 (617)
T ss_dssp HHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999875332 233688999999999999999999998 5
Q ss_pred hCCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCcc
Q 038104 320 LGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSI 399 (567)
Q Consensus 320 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~ 399 (567)
+++++++.||+||++..++... ..........|.|+.+...+.|+|. .+.+++.| +.|||+++|+++
T Consensus 326 ~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl~i~G~~v 392 (617)
T 3rg2_A 326 IGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLMTRGPYT 392 (617)
T ss_dssp TCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEEEECSSS
T ss_pred hCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEEEecCccc
Confidence 6999999999999875443221 1122234567888754448888885 67888888 889999999999
Q ss_pred chhccCChhhhhhccc-CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCC
Q 038104 400 MKGYLKNEEATSQSFK-NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQW 478 (567)
Q Consensus 400 ~~gy~~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 478 (567)
++||+++++.|.+.|. ++||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..
T Consensus 393 ~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~ 472 (617)
T 3rg2_A 393 FRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELM 472 (617)
T ss_dssp CSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTT
T ss_pred cchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCccc
Confidence 9999999999999994 899999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCceeEEEEeecCCCCCCCCCCHHHHHHHHHh-hCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhhh
Q 038104 479 GESPCAFISVKTNSAGKTDDVNEADILSYCRE-NLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNFA 548 (567)
Q Consensus 479 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~~ 548 (567)
|+.++++++..+ ..+..++++++++ .++.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 473 ~~~~~a~vv~~~-------~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 473 GEKSCAYLVVKE-------PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEEEEEEESS-------CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred CeeEEEEEEeCC-------CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 999999998765 3467899999998 69999999999999999999999999999999887643
No 19
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=6.3e-77 Score=620.22 Aligned_cols=494 Identities=25% Similarity=0.376 Sum_probs=392.5
Q ss_pred CCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeee
Q 038104 14 LSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNT 93 (567)
Q Consensus 14 ~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (567)
|||.++|.++|+++||++|+++.++++||+||.++++++|++|.+. +||+|+|+++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788999999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCC-CC-CccCC-cccHHHHHhcC
Q 038104 94 INVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDS-PT-GIRFG-EFEYEQFVQMG 170 (567)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~-~~~~~-~~~~~~~~~~~ 170 (567)
+++.++.+++.++++.++++++|++............. . ....+........ .. ..... ...........
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL-D------DIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKE 150 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET-T------C--------------------------------C
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc-c------cceeeeeecccccccccccccccccchhhccccC
Confidence 99999999999999999999999987654322110000 0 0000000000000 00 00000 00000001001
Q ss_pred CCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCc
Q 038104 171 DPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGG 250 (567)
Q Consensus 171 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~ 250 (567)
...........++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|.+|+..++.+++.|+
T Consensus 151 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 230 (501)
T 3ipl_A 151 SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGF 230 (501)
T ss_dssp CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCc
Confidence 10001112356789999999999999999999999999999888888889999999999999999999988889999999
Q ss_pred eeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHHHhCCeeeccccc
Q 038104 251 TNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIELLGFHVTHAYGL 330 (567)
Q Consensus 251 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~yG~ 330 (567)
++++.+.+++..+++.|+++++|++.++|+++..|++...... .+++.+++||+++++++.+.+.++++++++.||+
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~ 307 (501)
T 3ipl_A 231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQYNLPIYNSFGM 307 (501)
T ss_dssp EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHhCCCEeccccc
Confidence 9999999999999999999999999999999999988754332 2899999999999999999999889999999999
Q ss_pred cccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhh
Q 038104 331 TEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEAT 410 (567)
Q Consensus 331 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 410 (567)
||+++.++.+.. .........+|.|+++. .++++|.+ .+ +.|||+++|++++.||+++++.+
T Consensus 308 TE~~~~~~~~~~---------~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~~~~~t 369 (501)
T 3ipl_A 308 TETCSQFLTATP---------EMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLYPTDLT 369 (501)
T ss_dssp GGGTEEEEEECH---------HHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSBSTTCC
T ss_pred cccccceeecCc---------cccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCcChhhc
Confidence 999866554321 11223345789999998 89999874 22 56999999999999999999998
Q ss_pred hhcccCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeec
Q 038104 411 SQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKT 490 (567)
Q Consensus 411 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~ 490 (567)
.. |.+|||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++++...
T Consensus 370 ~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~ 448 (501)
T 3ipl_A 370 GT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSES 448 (501)
T ss_dssp CS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS
T ss_pred ch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCC
Confidence 87 88999999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred CCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHh
Q 038104 491 NSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKN 546 (567)
Q Consensus 491 ~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~ 546 (567)
..+.++|+++++++|+.|++|+.++++++||+|++||++|++|++...+
T Consensus 449 -------~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 449 -------DISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp -------CCCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred -------CCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 4578999999999999999999999999999999999999999987764
No 20
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.1e-75 Score=616.84 Aligned_cols=481 Identities=19% Similarity=0.233 Sum_probs=409.3
Q ss_pred CCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceee
Q 038104 13 PLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLN 92 (567)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 92 (567)
+.|+.++|.++++++||++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcCCC
Q 038104 93 TINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGDP 172 (567)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (567)
|+++.++.+++.++++.++++++|++.+....+... . ....+..++..... . ..
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~------~~~~~~~~~~~~~~--------------~-~~- 171 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----Q------FNGQVEIFEEDTIK--------------I-RE- 171 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----C------CCSEEEECCCSTTT--------------T-SC-
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----c------ccCceeeecchhhc--------------c-cc-
Confidence 999999999999999999999999998765433211 1 11233333221100 0 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCcee
Q 038104 173 RFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTN 252 (567)
Q Consensus 173 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~ 252 (567)
.........++++++++|||||||.||||.++|+++..........+++.++|+++...|++|..++..++.+++.|+++
T Consensus 172 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~ 251 (563)
T 1amu_A 172 GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASL 251 (563)
T ss_dssp CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEE
T ss_pred CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEE
Confidence 01111224567999999999999999999999999988887777788899999999999999999988788899999999
Q ss_pred eeeCC---CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHHHhCCeeecccc
Q 038104 253 VCLRN---TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIELLGFHVTHAYG 329 (567)
Q Consensus 253 ~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~yG 329 (567)
++.+. .++..+++.++++++|++.++|+++..|.. ..++++|.+++||+++++++.+.+... +++++.||
T Consensus 252 v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~------~~~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~YG 324 (563)
T 1amu_A 252 YIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------ERILSIQTLITAGSATSPSLVNKWKEK-VTYINAYG 324 (563)
T ss_dssp EECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------TTCCSCSEEEEESSCCCHHHHHHHTTT-SEEEEEEC
T ss_pred EEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh------cccccccEEEEEEecCCHHHHHHHHhC-CeEEEEEC
Confidence 98875 688999999999999999999999887743 246789999999999999999998753 89999999
Q ss_pred ccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhh
Q 038104 330 LTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEA 409 (567)
Q Consensus 330 ~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~ 409 (567)
+||++.+++.+..... .......+|.|+++. .++|+|. ++.+++.| +.|||+++|++++.||+++++.
T Consensus 325 ~TE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~ 392 (563)
T 1amu_A 325 PTETTICATTWVATKE--------TIGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWKRPEL 392 (563)
T ss_dssp CGGGSSCSEEEECCSS--------CCCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCHHH
T ss_pred cCHHhHhheeeecccc--------cCCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhChhhCCCchh
Confidence 9999877665432111 011235689999998 9999995 67788877 8899999999999999999999
Q ss_pred hhhccc-------CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCce
Q 038104 410 TSQSFK-------NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482 (567)
Q Consensus 410 ~~~~~~-------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 482 (567)
|.+.|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus 393 t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~ 472 (563)
T 1amu_A 393 TSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYL 472 (563)
T ss_dssp HHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEE
T ss_pred hhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEE
Confidence 999984 2499999999999999999999999999999999999999999999999999999999998888889
Q ss_pred eEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHH
Q 038104 483 CAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAK 545 (567)
Q Consensus 483 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~ 545 (567)
+++|+... ..+.++|+++++++|+.|++|..|+++++||+|++||++|++|++...
T Consensus 473 ~a~vv~~~-------~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 473 CAYFVSEK-------HIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp EEEEEESS-------CCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred EEEEEeCC-------CCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 99988642 357889999999999999999999999999999999999999987543
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.8e-75 Score=612.21 Aligned_cols=504 Identities=20% Similarity=0.203 Sum_probs=409.6
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhcccee
Q 038104 12 VPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVL 91 (567)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (567)
+..|+.++|+++++++|+++|+.+.++++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcCC
Q 038104 92 NTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGD 171 (567)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (567)
+|+++.++.+++.++++.++++++|++.+....+ ....++.+. .+........
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------------~~~~~~~~~-------------~~~~~~~~~~ 134 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------------EGISLVSLS-------------EIESAKLAEM 134 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------------TTSEEEEHH-------------HHHHHHHHTC
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCcccccc--------------ccCcccchh-------------hhhhcccccC
Confidence 9999999999999999999999999987642211 011111111 1111111111
Q ss_pred CCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhh--ccCCCCCEEEEecchHhhhhHHHHHHHHhhC
Q 038104 172 PRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILG--WEMGSAPVYLWSLPMFHCNGWTFTWGVAARG 249 (567)
Q Consensus 172 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g 249 (567)
+ ........++++++++|||||||.||+|.++|+++...+...... +++..+++++...|++|..++..++.++..|
T Consensus 135 ~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G 213 (521)
T 3l8c_A 135 P-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALG 213 (521)
T ss_dssp C-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTT
T ss_pred C-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 1 112223567899999999999999999999999998877666554 6788999999999999999988888889999
Q ss_pred ceeeeeCCC---CHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CCee
Q 038104 250 GTNVCLRNT---TAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GFHV 324 (567)
Q Consensus 250 ~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~~i 324 (567)
+++++.+.. ++..+++.+.++++|++.++|+++..++.........+++++.+++||+++++++.+.+. .+ ++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i 293 (521)
T 3l8c_A 214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKI 293 (521)
T ss_dssp CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceE
Confidence 999988764 889999999999999999999999999887766667889999999999999999999988 45 8999
Q ss_pred eccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhcc
Q 038104 325 THAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYL 404 (567)
Q Consensus 325 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~ 404 (567)
++.||+||+++.++.+..... .........+|.|+++. .++|+|. ++.+++.| +.|||+++||+++.||+
T Consensus 294 ~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~GY~ 363 (521)
T 3l8c_A 294 INAYGPTEATVALSAIEITRE------MVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAVSKGYL 363 (521)
T ss_dssp EEEECCGGGSSCSEEEEECHH------HHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTSCSCBT
T ss_pred EeCcCccHHhhhhceeecccc------cccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEecccccChhhc
Confidence 999999999887765432211 01111234689999998 9999996 67888887 88999999999999999
Q ss_pred CChhhhhhcc----cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCC-CCC
Q 038104 405 KNEEATSQSF----KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHP-QWG 479 (567)
Q Consensus 405 ~~~~~~~~~~----~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~-~~g 479 (567)
++++.+.+.| .++||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++ ..+
T Consensus 364 ~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~ 443 (521)
T 3l8c_A 364 NNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKV 443 (521)
T ss_dssp TCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC-
T ss_pred CCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCc
Confidence 9999999998 25799999999999999999999999999999999999999999999999999999988754 346
Q ss_pred CceeEEEEeecCCCCCCC--CCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhhhcccch
Q 038104 480 ESPCAFISVKTNSAGKTD--DVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNFAVSKDH 553 (567)
Q Consensus 480 ~~~~~~v~~~~~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~~~~~~~ 553 (567)
+.++++|+..++...... ....++|+++++++|+.|++|..|+++++||+|++||++|++|++++.+.....++
T Consensus 444 ~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~ 519 (521)
T 3l8c_A 444 QNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHHH 519 (521)
T ss_dssp --CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC--------
T ss_pred eEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCccccC
Confidence 789999998876421000 01257899999999999999999999999999999999999999998776554443
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5.2e-75 Score=609.59 Aligned_cols=498 Identities=22% Similarity=0.302 Sum_probs=410.1
Q ss_pred HHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeecc
Q 038104 16 PLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTIN 95 (567)
Q Consensus 16 l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 95 (567)
+.++++++++ +|+++|+++.+.++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 26 ~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 26 AAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVAN 104 (529)
T ss_dssp HHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECC
T ss_pred HHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecC
Confidence 8889999999 999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCC-CeEEEEeCCCCCCCccCCcccHHHHHhcCCCCC
Q 038104 96 VRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAG-PRVILIDDIDSPTGIRFGEFEYEQFVQMGDPRF 174 (567)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
+.++.+++.++++.++++++|++......+.+...... .. ..++..+..... ......+.++........
T Consensus 105 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 175 (529)
T 2v7b_A 105 TLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE------HDGCQLIVSQPRESE---PRLAPLFEELIDAAAPAA 175 (529)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---------CCEEEEECC---------CCCBHHHHHHTSCCCS
T ss_pred cccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc------ccCceEEEecccccc---cccccchhhhhccCCCcc
Confidence 99999999999999999999999887776655543221 12 344444332110 011235666655332222
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCceEEechHHH-HHHhhHhhhhccCCCCCEEEEecchHhhhhHHH-HHHHHhhCcee
Q 038104 175 LPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGA-YLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF-TWGVAARGGTN 252 (567)
Q Consensus 175 ~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g~~~ 252 (567)
+.....++++++++|||||||.||+|.++|+++ ..........+++.++|+++..+|++|.+++.. ++.++..|+++
T Consensus 176 -~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~ 254 (529)
T 2v7b_A 176 -KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATA 254 (529)
T ss_dssp -SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEE
T ss_pred -cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEE
Confidence 222356789999999999999999999999998 555555555678899999999999999999865 56788899999
Q ss_pred eee-CCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-HhCCeeeccccc
Q 038104 253 VCL-RNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LLGFHVTHAYGL 330 (567)
Q Consensus 253 ~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~yG~ 330 (567)
++. +.+++..+++.++++++|++.++|+++..++...........++|.+++||+++++++.+.+. .+++++++.||+
T Consensus 255 v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~ 334 (529)
T 2v7b_A 255 ILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGS 334 (529)
T ss_dssp ECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEEC
T ss_pred EEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEch
Confidence 887 568999999999999999999999999999876543333234899999999999999999998 569999999999
Q ss_pred cccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhh
Q 038104 331 TEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEAT 410 (567)
Q Consensus 331 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 410 (567)
||++.+++.+.... .....+|.|+++. .++|+|. ++.+++.| +.|||+++|++++.||+++++.+
T Consensus 335 TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t 399 (529)
T 2v7b_A 335 TEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMYWNNREKS 399 (529)
T ss_dssp TTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCCCCBTTCHHHH
T ss_pred hhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCcccccCCChHHH
Confidence 99976665432110 1235689999998 8999995 67888877 88999999999999999999999
Q ss_pred hhcccCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeec
Q 038104 411 SQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKT 490 (567)
Q Consensus 411 ~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~ 490 (567)
.+.|.++||+|||+|+++++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|+++ ++..++.++++|+..+
T Consensus 400 ~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~ 478 (529)
T 2v7b_A 400 RATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKR 478 (529)
T ss_dssp HHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECT
T ss_pred HHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999 6667888999998876
Q ss_pred CCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHH
Q 038104 491 NSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRA 542 (567)
Q Consensus 491 ~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~ 542 (567)
+... .....++|+++++++|+.|++|+.++++++||+|++||++|++|++
T Consensus 479 ~~~~--~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 479 EFAP--SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TCCC--CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred CCCc--chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 5310 0113468999999999999999999999999999999999999986
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.8e-76 Score=625.24 Aligned_cols=484 Identities=21% Similarity=0.271 Sum_probs=319.9
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhcccee
Q 038104 12 VPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVL 91 (567)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (567)
...++.++|+++++++||++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcCC
Q 038104 92 NTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMGD 171 (567)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (567)
+|++|.++.+++.++++.++++++|++......+ .....+.+.+... ...
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------~~~~~~~~~~~~~----------------~~~ 202 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------TGTTTLYVEDEAA----------------SDA 202 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------CSSEEEECCC----------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------cCCcceeeecccc----------------ccc
Confidence 9999999999999999999999999987643321 1111111111100 001
Q ss_pred CCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCce
Q 038104 172 PRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGT 251 (567)
Q Consensus 172 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~ 251 (567)
..........++++++++|||||||.||+|.++|+++...... ...+++.++|+++..+|++|..+...++.+++.|++
T Consensus 203 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~ 281 (570)
T 4gr5_A 203 PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGAR 281 (570)
T ss_dssp -CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCE
T ss_pred cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCE
Confidence 1111122356789999999999999999999999998765544 445678899999999999987777778889999999
Q ss_pred eeeeC--CCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CCeeecc
Q 038104 252 NVCLR--NTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GFHVTHA 327 (567)
Q Consensus 252 ~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~~i~~~ 327 (567)
+++.+ .+++..+++.|+++++|++.++|+++..|++... ..++++|.+++||++++++..+.+. .+ ++++++.
T Consensus 282 ~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~ 358 (570)
T 4gr5_A 282 CVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNG 358 (570)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEE
T ss_pred EEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEe
Confidence 99886 4689999999999999999999999999987643 4578999999999999999988887 44 7999999
Q ss_pred ccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCCh
Q 038104 328 YGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNE 407 (567)
Q Consensus 328 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~ 407 (567)
||+||++++++.+..... ........+|.|+++. +++|+|. ++.+++.| +.|||+++|++++.||++++
T Consensus 359 YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~~GY~~~~ 427 (570)
T 4gr5_A 359 YGPAESMGFTTHHAVVAG-------DLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAGLAHGYVSRP 427 (570)
T ss_dssp ECCGGGCSCSEEEECCGG-------GTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETTCH
T ss_pred echhhheeeeeeeeeccc-------ccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecccchhcCCCc
Confidence 999999887765432211 1112224589999998 9999995 57888887 89999999999999999999
Q ss_pred hhhhhccc---------CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCC
Q 038104 408 EATSQSFK---------NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQW 478 (567)
Q Consensus 408 ~~~~~~~~---------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 478 (567)
+.+.+.|. +|||+|||+|++|+||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..
T Consensus 428 ~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~ 507 (570)
T 4gr5_A 428 ALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLG 507 (570)
T ss_dssp HHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------------
T ss_pred hhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCC
Confidence 99999984 269999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHH
Q 038104 479 GESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALA 544 (567)
Q Consensus 479 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~ 544 (567)
++.++++|+...+.. ..+.++|+++++++|+.|++|..++++++||+|++||++|++|++..
T Consensus 508 ~~~~~a~vv~~~~~~----~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 508 DKQLVAYVVAERADA----PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ------------------------------------------------------------------
T ss_pred CeEEEEEEEecCCCC----CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 999999998765421 45678899999999999999999999999999999999999998753
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=4.3e-76 Score=659.73 Aligned_cols=519 Identities=25% Similarity=0.368 Sum_probs=348.9
Q ss_pred CCCHHHHHHHHHHHcCCceEEEeC--CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 038104 13 PLSPLTFLKRAAAVYGNRTSIIYE--GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAV 90 (567)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (567)
++|+.++|.++++++||++|+++. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcC
Q 038104 91 LNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMG 170 (567)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
++|++|.++.+++.++++.++++++|++....+.+...... ....++.+++.. ......+...|.++....
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 210 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--------DGVVIVCIDDNE-SVPIPEGCLRFTELTQST 210 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--------SCCEEEECCCCT-TSCCCTTEEEGGGTSSCC
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--------CCceEEEeCCcc-cccCCcccccHHHHhhcc
Confidence 99999999999999999999999999998887766665432 123444444321 111223345555554433
Q ss_pred CCC--CCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhh----hccCCCCCEEEEecchHhhhhHHH-HH
Q 038104 171 DPR--FLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLIL----GWEMGSAPVYLWSLPMFHCNGWTF-TW 243 (567)
Q Consensus 171 ~~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~-~~ 243 (567)
... ..+.....++++++++|||||||.||+|.++|+++...+..... .+++.++|+++..+|++|.+++.. ++
T Consensus 211 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~ 290 (979)
T 3tsy_A 211 TEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIML 290 (979)
T ss_dssp SGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHH
T ss_pred ccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHH
Confidence 221 11222356789999999999999999999999999887766543 356789999999999999999864 67
Q ss_pred HHHhhCceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-C
Q 038104 244 GVAARGGTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-G 321 (567)
Q Consensus 244 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~ 321 (567)
.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||+++++++.+++. .+ +
T Consensus 291 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 370 (979)
T 3tsy_A 291 CGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPN 370 (979)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTT
T ss_pred HHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCC
Confidence 888999999999999999999999999999999999999999988776777899999999999999999999998 45 8
Q ss_pred CeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccch
Q 038104 322 FHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMK 401 (567)
Q Consensus 322 ~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~ 401 (567)
+++++.||+||++.+++.+..... .........+|.|+++. +++|+|.+++.+++.| +.|||+++|++++.
T Consensus 371 ~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~ 441 (979)
T 3tsy_A 371 AKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRGHQIMK 441 (979)
T ss_dssp CEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEESTTSCS
T ss_pred CeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEECCCccc
Confidence 999999999999977665421110 01112235689999998 9999998888999888 78999999999999
Q ss_pred hccCChhhhhhcc-cCCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCC
Q 038104 402 GYLKNEEATSQSF-KNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGE 480 (567)
Q Consensus 402 gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~ 480 (567)
||+++|+.+.+.| .+|||+|||+|++++||.+++.||.||+||++|++|+|.+||++|.++|+|.+++|++++++..|+
T Consensus 442 GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~ 521 (979)
T 3tsy_A 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGE 521 (979)
T ss_dssp EETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC---------------------------------------
T ss_pred cccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCc
Confidence 9999999999999 489999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhhhcccchh
Q 038104 481 SPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNFAVSKDHN 554 (567)
Q Consensus 481 ~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~~~~~~~~ 554 (567)
.++++|+..++. ..+.++|+++++++|+.|++|..++++++||+|++||++|++|++++.+.......+
T Consensus 522 ~~~a~vv~~~~~-----~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~ 590 (979)
T 3tsy_A 522 VPVAFVVKSKDS-----ELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSGMAS 590 (979)
T ss_dssp ------------------------------------------------------------------------CC
T ss_pred EEEEEEEECCCC-----CCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCcccc
Confidence 999999887654 567789999999999999999999999999999999999999999998755444333
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.9e-74 Score=612.22 Aligned_cols=479 Identities=19% Similarity=0.196 Sum_probs=397.4
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 038104 11 YVPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAV 90 (567)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (567)
+.+.|+.++|.++++++||++|+++.++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcC
Q 038104 91 LNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMG 170 (567)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
++|++|.++.+++.++++.+++++++++....... .....+.+... ..
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------~~~~~~~~~~~------------------~~ 151 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------NGLPCVPVRHL------------------PA 151 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------TTSCEEEGGGC------------------CC
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------cCCceeeeccC------------------Cc
Confidence 99999999999999999999999999765422110 00111111110 00
Q ss_pred CCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCc
Q 038104 171 DPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGG 250 (567)
Q Consensus 171 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~ 250 (567)
...........++++++++|||||||.||||.++|+++...+.. ...+++.++|+++...|++|..++..++.+++.|+
T Consensus 152 ~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 230 (620)
T 4dg8_A 152 APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGG 230 (620)
T ss_dssp CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTC
T ss_pred CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCC
Confidence 01111112245789999999999999999999999998776655 45678899999999999999999988999999999
Q ss_pred eeeeeC--CCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CCeeec
Q 038104 251 TNVCLR--NTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GFHVTH 326 (567)
Q Consensus 251 ~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~~i~~ 326 (567)
++++.+ .+++..+++.|+++++|++.++|+++..|++.. ...++++|.+++|||+++++..+.+. .+ ++++++
T Consensus 231 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 307 (620)
T 4dg8_A 231 CCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVN 307 (620)
T ss_dssp EEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEe
Confidence 999864 578999999999999999999999999998753 34678999999999999988888876 44 889999
Q ss_pred cccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCC
Q 038104 327 AYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKN 406 (567)
Q Consensus 327 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~ 406 (567)
.||+||++.+++.+.... .........+|.|+++. .++|+|.+....++.| +.|||+++|+++++||+++
T Consensus 308 ~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~~v~~GY~~~ 377 (620)
T 4dg8_A 308 GYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGAGLAQGYRND 377 (620)
T ss_dssp EECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEETTCCSEETTC
T ss_pred eEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEeccccccccCCC
Confidence 999999987776543211 11222335789999998 9999997555446777 7899999999999999999
Q ss_pred hhhhhhcccC--------CcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCC
Q 038104 407 EEATSQSFKN--------GWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQW 478 (567)
Q Consensus 407 ~~~~~~~~~~--------~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~ 478 (567)
++.|.+.|.. +||+|||+|++++||.+++.||.||+||++|++|+|.+||.+|.++|+|.+++|++.+++..
T Consensus 378 p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~ 457 (620)
T 4dg8_A 378 AARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGV 457 (620)
T ss_dssp HHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTE
T ss_pred hhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCc
Confidence 9999999964 79999999999999999999999999999999999999999999999999999999988754
Q ss_pred CCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 479 GESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 479 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
++. +++++... . .++++++++|+.|++|..++++++||+|++||++|++|++.+.+.
T Consensus 458 ~~l-v~~~~~~~-------~----~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 458 KQL-LCAWTGKA-------D----ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp EEE-EEEEEECT-------T----CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred eEE-EEEEecCh-------H----HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 443 33333221 1 134567788999999999999999999999999999999887654
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.8e-74 Score=597.99 Aligned_cols=476 Identities=26% Similarity=0.367 Sum_probs=387.4
Q ss_pred CCCCHHHHHHHHHHHcCC-ceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 038104 12 VPLSPLTFLKRAAAVYGN-RTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAV 90 (567)
Q Consensus 12 ~~~tl~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (567)
+-.|+.++|.++++++|+ ++|+++.++++||+||.++++++|.+|. .||+|+++++|++++++++|||+++|++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 345788899999998887 9999999999999999999999998875 3889999999999999999999999999
Q ss_pred eeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHHhcC
Q 038104 91 LNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFVQMG 170 (567)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
++|++|.++.+++.++++.++++++|++.+.... .. . .....+.++..
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~~---~-------~~~~~~~~~~~-------------------- 142 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--PA---L-------GALERVDVDVR-------------------- 142 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--GG---G-------TTSEEEECCTT--------------------
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--hh---h-------ccccccccccc--------------------
Confidence 9999999999999999999999999998652100 00 0 11112222110
Q ss_pred CCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHH-HHHHHhhC
Q 038104 171 DPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTF-TWGVAARG 249 (567)
Q Consensus 171 ~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~~g 249 (567)
.....+.....++++++++|||||||.||+|.++|+++..........+++.++|+++..+|++|..|+.. ++.++..|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 00111122356789999999999999999999999999999888888889999999999999999999864 78899999
Q ss_pred ceeeeeCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCc---ccccCCCceEEEEcCCCCCHHHHHHHH-HhCCeee
Q 038104 250 GTNVCLRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPE---ERKEIASPVQILTGGAPPPASLLEEIE-LLGFHVT 325 (567)
Q Consensus 250 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~ 325 (567)
+++++.+.+++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++||+++++++.+.+. .++++++
T Consensus 223 ~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~ 301 (505)
T 3nyq_A 223 GSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVI 301 (505)
T ss_dssp CEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCE
T ss_pred CEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCCeee
Confidence 999999999999999999 88999999999999999875322 234567899999999999999999998 5699999
Q ss_pred ccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCC-CCcceeEEEEecCccchhcc
Q 038104 326 HAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPR-DGKTMGEIVLRGSSIMKGYL 404 (567)
Q Consensus 326 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~-~~~~~Gel~v~~~~~~~gy~ 404 (567)
+.||+||++..++..... ......+|.|+++. .++|+|. ++.+++. ..++.|||+++|++++.||+
T Consensus 302 ~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v~g~~v~~GY~ 368 (505)
T 3nyq_A 302 ERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYL 368 (505)
T ss_dssp EEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEESTTSCCEET
T ss_pred cccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEEecCchhhhhC
Confidence 999999998655442211 12235689999998 8999987 4566654 22388999999999999999
Q ss_pred CChhhhhhccc-CCcccCCceEEEecCCcEEEEccC-CceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCce
Q 038104 405 KNEEATSQSFK-NGWFRTGDVGVIHPDGYLEIKDRS-KDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482 (567)
Q Consensus 405 ~~~~~~~~~~~-~~~~~TGD~~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 482 (567)
++++.+.+.|. +|||+|||+|++++||.+++.||+ ||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+++
T Consensus 369 ~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l 448 (505)
T 3nyq_A 369 NRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERI 448 (505)
T ss_dssp TCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEE
T ss_pred CChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEE
Confidence 99999999995 899999999999999999999998 5899999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHH
Q 038104 483 CAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRA 542 (567)
Q Consensus 483 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~ 542 (567)
+++|+..++.. ..+.++|+++++++|+.|++|+.|+++++||+|++||++|++|++
T Consensus 449 ~a~vv~~~~~~----~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 449 VAWIVPADPAA----PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEESSTTS----CCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred EEEEEECCCCC----CCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999875321 567899999999999999999999999999999999999999986
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4e-73 Score=604.23 Aligned_cols=519 Identities=18% Similarity=0.188 Sum_probs=419.2
Q ss_pred ccccCCCCCHHHHHHHHHHHcCCceEEEeC----CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHH
Q 038104 7 CEANYVPLSPLTFLKRAAAVYGNRTSIIYE----GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHF 82 (567)
Q Consensus 7 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~l 82 (567)
+...++++|+.++|+++|+++||++|+++. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|
T Consensus 4 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 83 (590)
T 3kxw_A 4 KKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFL 83 (590)
T ss_dssp SHHHHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred chhhcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHH
Confidence 444568899999999999999999999874 4899999999999999999999999999999999999999999999
Q ss_pred HhhhccceeeeccCCC---ChHHHHHHHHhcCceEEEEcccchHHHHHHh-hhhhccccCCCCCeEEEEeCCCCCCCccC
Q 038104 83 AVPMAEAVLNTINVRL---DAKNVASILRHSEAKVFFVDCQYVQLAREAL-KLYFVEDRDAAGPRVILIDDIDSPTGIRF 158 (567)
Q Consensus 83 A~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 158 (567)
||+++|++++|++|.+ +.+++.++++.+++++++++.+....+.... .... ....+..+...
T Consensus 84 A~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-------- 149 (590)
T 3kxw_A 84 GCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP------KFLKIPAIALE-------- 149 (590)
T ss_dssp HHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC------EETTEEEEEGG--------
T ss_pred HHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc------cccccceeech--------
Confidence 9999999999999988 4578999999999999999887655443221 1100 00111111110
Q ss_pred CcccHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhh
Q 038104 159 GEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNG 238 (567)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 238 (567)
.+....... .......++++++++|||||||.||+|.++|+++...+......+++.++|+++..+|++|..|
T Consensus 150 ------~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 222 (590)
T 3kxw_A 150 ------SIELNRSSS-WQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMG 222 (590)
T ss_dssp ------GCCGGGGGG-CCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred ------hcccccccc-CCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchh
Confidence 000000001 1112356789999999999999999999999999999998888899999999999999999999
Q ss_pred HHH-HHHHHhhCceeeeeCCC----CHHHHHHHHHhcCcceeecchHHHHHHHhcCC---cccccCCCceEEEEcCCCCC
Q 038104 239 WTF-TWGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQAKP---EERKEIASPVQILTGGAPPP 310 (567)
Q Consensus 239 ~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~l~~~~~~g~~l~ 310 (567)
+.. ++.+++.|+++++.+.+ ++..+++.|+++++|++.++|.++..+++... .....+++++.+++||++++
T Consensus 223 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~ 302 (590)
T 3kxw_A 223 LIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302 (590)
T ss_dssp HHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCC
T ss_pred hHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCC
Confidence 876 78888899999988765 78999999999999999999999999987633 33456889999999999999
Q ss_pred HHHHHHHH-Hh------CCeeeccccccccCCCccccccccccCC----------------CCCchhhhhccccCceeee
Q 038104 311 ASLLEEIE-LL------GFHVTHAYGLTEATGPALVCEWQSSWNQ----------------LPKPDQAKLKARQGISILT 367 (567)
Q Consensus 311 ~~~~~~~~-~~------~~~i~~~yG~tE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~G~~~~~ 367 (567)
+++.+.+. .+ +.++++.||+||++++++.......+.. ............+|.|+++
T Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 382 (590)
T 3kxw_A 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE 382 (590)
T ss_dssp HHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC
Confidence 99999988 44 2479999999999987765432211100 0001112234567888876
Q ss_pred ecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhhhhcccC-------C--cccCCceEEEecCCcEEEEcc
Q 038104 368 LADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKN-------G--WFRTGDVGVIHPDGYLEIKDR 438 (567)
Q Consensus 368 ~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~-------~--~~~TGD~~~~~~~g~l~~~GR 438 (567)
++|+|.+++.+++.| +.|||+++||+++.||+++|+.|.+.|.+ | ||+|||+|+++ +|.+++.||
T Consensus 383 ---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 383 ---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp ---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred ---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 788998878888888 88999999999999999999999999853 5 99999999999 999999999
Q ss_pred CCceeeeCceeechHHHHHHH-HcCCCce--EEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCC-
Q 038104 439 SKDVIISGGENISSVELENVL-FRHPRVL--EAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSR- 514 (567)
Q Consensus 439 ~~d~i~~~G~~v~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~- 514 (567)
.||+||++|++|+|.+||.+| ..+|.|. +++|++++++. ++.++++++..++... ..+.+++.+++++.++.
T Consensus 457 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~---~~~~~~l~~~l~~~l~~~ 532 (590)
T 3kxw_A 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD---DVAQDNLFNEIFELVYEN 532 (590)
T ss_dssp SSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC---HHHHHHHHHHHHHHHHHH
T ss_pred ccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc---chhHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7789998 89999998876 7788888888765311 34567899999998875
Q ss_pred Ccccc-EEEEe--CCCCCCCCCccchHHHHHHHHhhhcccchhhh
Q 038104 515 FMVPK-KVVIL--PELPKTATGKIQKFQLRALAKNFAVSKDHNAQ 556 (567)
Q Consensus 515 ~~~p~-~i~~v--~~~P~t~~GKv~r~~l~~~~~~~~~~~~~~~~ 556 (567)
+++|. .++++ ++||+|++||++|++|++++.+........++
T Consensus 533 ~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~~~~~~ 577 (590)
T 3kxw_A 533 HQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPIVATWQ 577 (590)
T ss_dssp HSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCCSEEEE
T ss_pred cCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCceeeeec
Confidence 77775 55555 79999999999999999999886555444443
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.5e-73 Score=600.20 Aligned_cols=499 Identities=16% Similarity=0.161 Sum_probs=316.2
Q ss_pred CCCCCHHHHHHHHHHHcCCceEEEeCC----------eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHH
Q 038104 11 YVPLSPLTFLKRAAAVYGNRTSIIYEG----------ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEM 80 (567)
Q Consensus 11 ~~~~tl~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~ 80 (567)
++++|+.++|+++|+++||++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+|+++|+++++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 488999999999999999999998743 789999999999999999999999 799999999999999999
Q ss_pred HHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCc
Q 038104 81 HFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGE 160 (567)
Q Consensus 81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 160 (567)
+|||+++|++++|+++.++.+++.++++.++++++|++......+. .. ....++.. ..
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~~------~~~~~~~~-----------~~ 153 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----LP------PETKVLDT-----------KN 153 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----CC------TTCEEEET-----------TC
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----cC------ccceeecc-----------cc
Confidence 9999999999999999999999999999999999999866432110 00 11122111 11
Q ss_pred ccHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhh--------hccCCCCCEEEEecc
Q 038104 161 FEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLIL--------GWEMGSAPVYLWSLP 232 (567)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~--------~~~~~~~d~~~~~~p 232 (567)
..+.+.......... .....++++++++|||||||.||+|.++|+++......... .+.+...++++...|
T Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (562)
T 3ite_A 154 QSFIENLSTQDTSDI-LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLAS 232 (562)
T ss_dssp HHHHHHHHHSCCSCC-CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSC
T ss_pred hhhhhhccccccccc-ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecC
Confidence 233333332222221 12245678899999999999999999999999876655433 245778899999999
Q ss_pred hHhhhhHHHHHHHHhhCceeeeeCCCC-HHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCH
Q 038104 233 MFHCNGWTFTWGVAARGGTNVCLRNTT-AYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPA 311 (567)
Q Consensus 233 ~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~ 311 (567)
++|..++..++.++..|+++++.+... +..+++.++++++|++.++|++++.+.. ....++++|.+++||+++++
T Consensus 233 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~gG~~l~~ 308 (562)
T 3ite_A 233 RAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGVGGEKMTP 308 (562)
T ss_dssp TTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEEESSCCCH
T ss_pred chhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEEecCCCCH
Confidence 999888888888999999988876543 4678899999999999999999888743 23568899999999999999
Q ss_pred HHHHHHHH-hCCeeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCccee
Q 038104 312 SLLEEIEL-LGFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMG 390 (567)
Q Consensus 312 ~~~~~~~~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~G 390 (567)
++.+.+.. +++++++.||+||++..++....... .....+|.|+++. .+++++.+.+.+++.| +.|
T Consensus 309 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~G 375 (562)
T 3ite_A 309 RTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSNEHVKKG--MAG 375 (562)
T ss_dssp HHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSSCBCCTT--SCE
T ss_pred HHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCCCCCCCC--Cce
Confidence 99999984 58999999999999877665432111 1224679999988 8999998888888888 889
Q ss_pred EEEEecCccchhccCChhhhhhcccCC--cccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcC-CCceE
Q 038104 391 EIVLRGSSIMKGYLKNEEATSQSFKNG--WFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRH-PRVLE 467 (567)
Q Consensus 391 el~v~~~~~~~gy~~~~~~~~~~~~~~--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~-~~v~~ 467 (567)
||+++|++++.||+++++.+...+.+| ||+|||+|++|+||++++.||.||+||++|++|+|.+||++|.++ +.+.+
T Consensus 376 El~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~ 455 (562)
T 3ite_A 376 ELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDID 455 (562)
T ss_dssp EEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC-----------------------------
T ss_pred EEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCcee
Confidence 999999999999999999988877777 999999999999999999999999999999999999999999998 77889
Q ss_pred EEEEeecCCCCCCceeEEEEeecCCCCC--------CCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCC-CCCccchH
Q 038104 468 AAVVAMPHPQWGESPCAFISVKTNSAGK--------TDDVNEADILSYCRENLSRFMVPKKVVILPELPKT-ATGKIQKF 538 (567)
Q Consensus 468 ~~v~~~~~~~~g~~~~~~v~~~~~~~~~--------~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t-~~GKv~r~ 538 (567)
++|++.+++..++..++.++...+.... ......++|+++++++|+.|++|+.|+++++||+| ++||++|+
T Consensus 456 ~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~ 535 (562)
T 3ite_A 456 VVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAK 535 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHH
Confidence 9999999888887766666554432100 01122458999999999999999999999999998 89999999
Q ss_pred HHHHHHHhhhcc
Q 038104 539 QLRALAKNFAVS 550 (567)
Q Consensus 539 ~l~~~~~~~~~~ 550 (567)
+|++++.++...
T Consensus 536 ~L~~~~~~~~~~ 547 (562)
T 3ite_A 536 ALEHMFHTLSLG 547 (562)
T ss_dssp ------------
T ss_pred HHHHHHhccCHH
Confidence 999999876443
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.9e-70 Score=580.94 Aligned_cols=502 Identities=20% Similarity=0.259 Sum_probs=411.4
Q ss_pred CCCHHHHHHHHHHHcCCceEEEeC---CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccc
Q 038104 13 PLSPLTFLKRAAAVYGNRTSIIYE---GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEA 89 (567)
Q Consensus 13 ~~tl~~~l~~~a~~~p~~~a~~~~---~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (567)
..|+.++|+++++++|+.+++... ++++||+||.++++++|++|.++|+++||+|+|+++|+++++++++||+++|+
T Consensus 20 ~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (576)
T 3gqw_A 20 FPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGL 99 (576)
T ss_dssp CSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCC
Confidence 449999999999999999888653 37999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCC-------hHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCccc
Q 038104 90 VLNTINVRLD-------AKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFE 162 (567)
Q Consensus 90 ~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 162 (567)
+++|+++.++ .+++.++++.++++++|++.+....+........ ...++.. .
T Consensus 100 ~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-------~~~~~~~--------------~ 158 (576)
T 3gqw_A 100 VAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNP-------ELHVLSH--------------A 158 (576)
T ss_dssp EEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCT-------TCEEEEH--------------H
T ss_pred eEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCC-------cceecch--------------h
Confidence 9999999998 7999999999999999999988777766544221 1111110 1
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhh-ccCCCCCEEEEecchHhhhhHHH
Q 038104 163 YEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILG-WEMGSAPVYLWSLPMFHCNGWTF 241 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~ 241 (567)
+. ..............++++++++|||||||.||+|.++|+++...+...... +++.++|+++..+|++|.+|+..
T Consensus 159 ~~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~ 235 (576)
T 3gqw_A 159 WF---KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVG 235 (576)
T ss_dssp HH---HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHH
T ss_pred hh---hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHH
Confidence 11 111111112223457899999999999999999999999998887776544 78999999999999999999875
Q ss_pred -HHHHHhhCceeeeeCC----CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCc---ccccCCCceEEEEcCCCCCHHH
Q 038104 242 -TWGVAARGGTNVCLRN----TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPE---ERKEIASPVQILTGGAPPPASL 313 (567)
Q Consensus 242 -~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~---~~~~l~~l~~~~~~g~~l~~~~ 313 (567)
++.++..|+++++.+. +++..+++.|+++++|++.++|+++..+.+.... ....++++|.+++||+++++++
T Consensus 236 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~ 315 (576)
T 3gqw_A 236 FLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQ 315 (576)
T ss_dssp HTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHH
Confidence 5566777887777653 5788999999999999999999999988765433 2345789999999999999999
Q ss_pred HHHHH-Hh------CCeeeccccccccCCCccccccccccCCC---------------C--CchhhhhccccCceeeeec
Q 038104 314 LEEIE-LL------GFHVTHAYGLTEATGPALVCEWQSSWNQL---------------P--KPDQAKLKARQGISILTLA 369 (567)
Q Consensus 314 ~~~~~-~~------~~~i~~~yG~tE~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~G~~~~~~~ 369 (567)
.+.+. .+ ++++++.||+||++.+++.+....+.... + ..........+|.|+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~- 394 (576)
T 3gqw_A 316 LHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEH- 394 (576)
T ss_dssp HHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTC-
T ss_pred HHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCC-
Confidence 99998 44 67899999999999877765422211100 0 000011123689999998
Q ss_pred ceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhhhhcccCCcccCCceEEEecCCcEEEEccCCceeeeCcee
Q 038104 370 DVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGEN 449 (567)
Q Consensus 370 ~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~ 449 (567)
.++|+| +++.+++.| +.|||+++|++++.||+++++.+.+.+.+|||+|||+|++ +||.+++.||.||+||++|++
T Consensus 395 ~~~i~d-~~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~ 470 (576)
T 3gqw_A 395 GIEIRN-EAGMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRN 470 (576)
T ss_dssp EEEEEC-TTSCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEE
T ss_pred eEEEEC-CCCCCCCCC--CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEECCEE
Confidence 899999 478888887 8899999999999999999999988888999999999999 699999999999999999999
Q ss_pred echHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhC-CCCccccEEEEeC--C
Q 038104 450 ISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENL-SRFMVPKKVVILP--E 526 (567)
Q Consensus 450 v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l-~~~~~p~~i~~v~--~ 526 (567)
|+|.+||++|.++|+|.+++|++..++. +...+++...... ....+++++++++.+ +.|++|..+.+++ +
T Consensus 471 v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~ 543 (576)
T 3gqw_A 471 IWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISD-----EERRGQLIHALAARIQSEFGVTAAIDLLPPHS 543 (576)
T ss_dssp ECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHSCCEEEEEECSSC
T ss_pred ECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCc-----hhHHHHHHHHHHHHHHHHhCCceeEEEECCCC
Confidence 9999999999999999999988887764 3355555544332 345577888898888 6899999998887 8
Q ss_pred CCCCCCCccchHHHHHHHHhhhcc
Q 038104 527 LPKTATGKIQKFQLRALAKNFAVS 550 (567)
Q Consensus 527 ~P~t~~GKv~r~~l~~~~~~~~~~ 550 (567)
||+|++||++|++|++++.+....
T Consensus 544 lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 544 IPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp SCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred cCcCCCccchHHHHHHHHHHHhhh
Confidence 999999999999999999886543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.4e-70 Score=624.44 Aligned_cols=490 Identities=22% Similarity=0.254 Sum_probs=416.4
Q ss_pred cccCCCCCHHHHHHHHHHHcCCceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhc
Q 038104 8 EANYVPLSPLTFLKRAAAVYGNRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMA 87 (567)
Q Consensus 8 ~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 87 (567)
..++++.++.++|.++++++||++|+++.++++||+||.++++++|++|.+.|+++||+|+|+++|+++++++++||+++
T Consensus 458 ~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailka 537 (1304)
T 2vsq_A 458 AQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKA 537 (1304)
T ss_dssp CCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCCCCccCCcccHHHHH
Q 038104 88 EAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSPTGIRFGEFEYEQFV 167 (567)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 167 (567)
|++++|++|.++.+++.++++.+++++++++.+....+.. ++ .....+.+++. ..+
T Consensus 538 G~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~------~~~~~~~~~~~----------~~~---- 593 (1304)
T 2vsq_A 538 GAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP------YTGTTLFIDDQ----------TRF---- 593 (1304)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC------CCSEEEESSCG----------GGG----
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC------CCCcEEEeccc----------ccc----
Confidence 9999999999999999999999999999998765432111 10 11223332221 000
Q ss_pred hcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHh
Q 038104 168 QMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAA 247 (567)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~ 247 (567)
.. ....+.....++++++++|||||||.||||+++|+++.+. ......+++.++|+++...|++|..+...++.+++
T Consensus 594 ~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~ 670 (1304)
T 2vsq_A 594 EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASML 670 (1304)
T ss_dssp GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHT
T ss_pred cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHH
Confidence 00 1111222356789999999999999999999999998765 44555678899999999999999888878899999
Q ss_pred hCceeeeeCC---CCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHH-Hh-CC
Q 038104 248 RGGTNVCLRN---TTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIE-LL-GF 322 (567)
Q Consensus 248 ~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~-~~-~~ 322 (567)
.|+++++.+. .++..+++.|+++++|++.++|+++..|..... ..++++|.+++|||+++++..+.+. .+ ++
T Consensus 671 ~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~ 747 (1304)
T 2vsq_A 671 NAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMKGLRCILFGGERASVPHVRKALRIMGPG 747 (1304)
T ss_dssp TTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHHTCSEEEEESSCCCHHHHHHHHHHHCTT
T ss_pred cCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCCCccEEEEecCCCCHHHHHHHHHhCCCC
Confidence 9999999874 689999999999999999999999999987532 3457899999999999999999987 44 57
Q ss_pred eeeccccccccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchh
Q 038104 323 HVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKG 402 (567)
Q Consensus 323 ~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~g 402 (567)
++++.||+||++..++.+..... ........+|+|+++. .++|+|. .++++|.| +.|||+++|+++++|
T Consensus 748 ~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~~v~~G 816 (1304)
T 2vsq_A 748 KLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGMGVSKG 816 (1304)
T ss_dssp CEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEETTCCCC
T ss_pred EEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEeccccCcc
Confidence 89999999999887765432110 0111234689999998 8999996 57888888 889999999999999
Q ss_pred ccCChhhhhhccc-------CCcccCCceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecC
Q 038104 403 YLKNEEATSQSFK-------NGWFRTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPH 475 (567)
Q Consensus 403 y~~~~~~~~~~~~-------~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~ 475 (567)
|+++|+.|.++|. ++||+|||+|++++||.+++.||.||+||++|++|+|.|||.+|.++|+|.+++|++.++
T Consensus 817 Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~ 896 (1304)
T 2vsq_A 817 YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRH 896 (1304)
T ss_dssp BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEec
Confidence 9999999999983 349999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHH
Q 038104 476 PQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAK 545 (567)
Q Consensus 476 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~ 545 (567)
+..+.+++++|+... ..+.++++++++++||.|++|..++++++||+|++||++|++|.+...
T Consensus 897 ~~~~~~l~a~vv~~~-------~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 897 ESGDASINAYLVNRT-------QLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp SSSCCEEEEEEECSS-------SSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred CCCCEEEEEEEeCCC-------CCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 888889999988643 357889999999999999999999999999999999999999976443
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.3e-58 Score=480.36 Aligned_cols=405 Identities=20% Similarity=0.233 Sum_probs=317.2
Q ss_pred cccccCCCCCHHHHHHHHHHHcCCceEEEeCC---------eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHH
Q 038104 6 KCEANYVPLSPLTFLKRAAAVYGNRTSIIYEG---------ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPA 76 (567)
Q Consensus 6 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~ 76 (567)
+.-.+++.+|+.++|+++++++||++|+++.+ +++||+||.++++++|++|.++|+ +||+|+|+++|+++
T Consensus 16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e 94 (480)
T 3t5a_A 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE 94 (480)
T ss_dssp --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence 35567789999999999999999999999865 899999999999999999999996 99999999999999
Q ss_pred HHHHHHHhhhccceeeeccC---CCChHHHHHHHHhcCceEEEEcccchHHHHHHhhhhhccccCCCCCeEEEEeCCCCC
Q 038104 77 MYEMHFAVPMAEAVLNTINV---RLDAKNVASILRHSEAKVFFVDCQYVQLAREALKLYFVEDRDAAGPRVILIDDIDSP 153 (567)
Q Consensus 77 ~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 153 (567)
+++++|||+++|++++|+++ .++.+++.++++.++++++|++......+.+........ ....++.++....
T Consensus 95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~- 169 (480)
T 3t5a_A 95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE----SPPSIIEVDLLDL- 169 (480)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC----------CCEEEEGGGSCT-
T ss_pred HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc----cccceeEeccccc-
Confidence 99999999999999999999 788999999999999999999998877766544322110 1123333322111
Q ss_pred CCccCCcccHHHHHhcCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCC------CCEE
Q 038104 154 TGIRFGEFEYEQFVQMGDPRFLPEEIHDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGS------APVY 227 (567)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~------~d~~ 227 (567)
......+.....++++++++|||||||.||+|.++|+++...+......+++.. +|++
T Consensus 170 ----------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 170 ----------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSAL 233 (480)
T ss_dssp ----------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEE
T ss_pred ----------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeE
Confidence 011111122356789999999999999999999999999988888777777777 9999
Q ss_pred EEecchHhhhhHHH-HHHHHhhCceeeeeCCC----CHHHHHHHHHhcCcceeecchHHHHHHHhc----CCcccccCCC
Q 038104 228 LWSLPMFHCNGWTF-TWGVAARGGTNVCLRNT----TAYDMYRNISQHRVTHMCCAPIVFNILLQA----KPEERKEIAS 298 (567)
Q Consensus 228 ~~~~p~~~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~----~~~~~~~l~~ 298 (567)
+..+|++|.+|+.. ++.+++.|+++++.+.. ++..+++.++++++| +.++|+++..++.. .......+++
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~ 312 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGN 312 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTT
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhh
Confidence 99999999999764 78888999999998754 889999999999999 88999998888764 2233467899
Q ss_pred ceEEEEcCCCCCHHHHHHHH-HhC------CeeeccccccccCCCccccccccccCCC--C------------Cchhhhh
Q 038104 299 PVQILTGGAPPPASLLEEIE-LLG------FHVTHAYGLTEATGPALVCEWQSSWNQL--P------------KPDQAKL 357 (567)
Q Consensus 299 l~~~~~~g~~l~~~~~~~~~-~~~------~~i~~~yG~tE~~~~~~~~~~~~~~~~~--~------------~~~~~~~ 357 (567)
+|.+++||+++++++.+++. .++ +.+++.||+||++..++........... . .......
T Consensus 313 lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 392 (480)
T 3t5a_A 313 ILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATS 392 (480)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEE
T ss_pred hheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcce
Confidence 99999999999999999998 442 4799999999999877664322110000 0 0000223
Q ss_pred ccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhhhhcc------------cCCcccCCceE
Q 038104 358 KARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSF------------KNGWFRTGDVG 425 (567)
Q Consensus 358 ~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~------------~~~~~~TGD~~ 425 (567)
...+|.|++ . .++|+|.+++.+++.| +.|||+|+|++++.||+++|+.|.+.| .+|||+|||+|
T Consensus 393 ~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg 468 (480)
T 3t5a_A 393 LISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSG 468 (480)
T ss_dssp EECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEE
T ss_pred eeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeecccee
Confidence 457899999 6 9999998888888888 889999999999999999999999998 35699999999
Q ss_pred EEecCCcEEEEcc
Q 038104 426 VIHPDGYLEIKDR 438 (567)
Q Consensus 426 ~~~~~g~l~~~GR 438 (567)
+++ ||+|++.||
T Consensus 469 ~~d-dG~l~~~GR 480 (480)
T 3t5a_A 469 FVT-DGKMFIIGR 480 (480)
T ss_dssp EEE-TTEEEECC-
T ss_pred eEE-CCEEEEeCC
Confidence 997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=5.4e-53 Score=417.84 Aligned_cols=316 Identities=18% Similarity=0.186 Sum_probs=265.9
Q ss_pred CCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeCCCCHH
Q 038104 182 EWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLRNTTAY 261 (567)
Q Consensus 182 ~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 261 (567)
.+++++|+|||||||.||+|.++|+++...+......++++++|++++.+|++|.+|+..++.+++.|+++++.++. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 47899999999999999999999999999998888889999999999999999999999889999999999888643 1
Q ss_pred HHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHHHHHHHHHhCCeeeccccccccCCCccccc
Q 038104 262 DMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPASLLEEIELLGFHVTHAYGLTEATGPALVCE 341 (567)
Q Consensus 262 ~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~ 341 (567)
..++.|+++++|++.++|+++..|++... ....++++|.+++||+++++++.++++++++++++.||+||+++.++...
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~ 192 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKA 192 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeeccc
Confidence 24677889999999999999999988754 34578899999999999999999999988999999999999987766543
Q ss_pred cccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhhhhcccCCcccC
Q 038104 342 WQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRT 421 (567)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~T 421 (567)
.+. .....+|.+.++. .+.+ + +.||++++|+.. .+|||+|
T Consensus 193 ~~~-----------~~~g~~~~~~pgv-~~~~-----------~--~~Gel~~~g~~~---------------~~g~~~T 232 (358)
T 4gs5_A 193 LNG-----------PEASELYVFLPGI-QYGV-----------D--ERGCLHISGAVT---------------NGQTVQT 232 (358)
T ss_dssp CSS-----------TTCCSCEEECTTC-EEEE-----------C--TTSEEEEESGGG---------------TTCCEEE
T ss_pred ccc-----------cccceeeccCCCe-EEEe-----------c--CcCceEEecccc---------------cCcceec
Confidence 211 1113345555544 3222 1 349999988632 3689999
Q ss_pred CceEEEecCCcEEEEccCCceeeeCceeechHHHHHHHH---cCCCceEEEEE-eecCCCCCCceeEEEEeecCCCCCCC
Q 038104 422 GDVGVIHPDGYLEIKDRSKDVIISGGENISSVELENVLF---RHPRVLEAAVV-AMPHPQWGESPCAFISVKTNSAGKTD 497 (567)
Q Consensus 422 GD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~---~~~~v~~~~v~-~~~~~~~g~~~~~~v~~~~~~~~~~~ 497 (567)
||+|++|++| +++.||.||+||++|++|+|.+||+.|. .+|+|.+++|+ +.+++..|+.++++|+...+
T Consensus 233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~------ 305 (358)
T 4gs5_A 233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP------ 305 (358)
T ss_dssp EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC------
T ss_pred CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC------
Confidence 9999999988 6677999999999999999999998774 57999998876 67888889999988875443
Q ss_pred CCCHHHHHHHHHhhCCCCccccEEEEeCCCCCCCCCccchHHHHHHHHhh
Q 038104 498 DVNEADILSYCRENLSRFMVPKKVVILPELPKTATGKIQKFQLRALAKNF 547 (567)
Q Consensus 498 ~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GKv~r~~l~~~~~~~ 547 (567)
..+.++|+++++++|+.|++|+.|+++++||+|++||++|++|++++++.
T Consensus 306 ~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 35568899999999999999999999999999999999999999987653
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.2e-47 Score=390.13 Aligned_cols=329 Identities=21% Similarity=0.248 Sum_probs=265.0
Q ss_pred CCC-CCcEEEEeccCCCCCCceEEechHHHHHHhhHh---hhhccCCCCCEEEEecchHhhhhH-HHHHHHHhhCceeee
Q 038104 180 HDE-WDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSL---ILGWEMGSAPVYLWSLPMFHCNGW-TFTWGVAARGGTNVC 254 (567)
Q Consensus 180 ~~~-~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~~~~g~~~~~ 254 (567)
... +++++++|||||||.||+|.++|+++...+... ...+++.++|+++...|+.|..+. ...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 789999999999999999999999987665544 334588999999999998655554 457778889999999
Q ss_pred eCCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCccccc--CCCceEEEEcCCCCCHHHHHHHH-HhCCeeecccccc
Q 038104 255 LRNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERKE--IASPVQILTGGAPPPASLLEEIE-LLGFHVTHAYGLT 331 (567)
Q Consensus 255 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~--l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~yG~t 331 (567)
.+..++..+++.|+++++|++.++|+++..|++........ +++++.+++||+++++++.+.+. .+++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 88889999999999999999999999999998875443333 78999999999999999999998 5599999999999
Q ss_pred ccCCCccccccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhhh
Q 038104 332 EATGPALVCEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEATS 411 (567)
Q Consensus 332 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~ 411 (567)
|+++.++..... .....+.+.++. .++++|.+++.+++.| +.|||+++|. +.
T Consensus 242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 996543332100 001233344455 7899997789999888 8899999983 33
Q ss_pred hcccCCcccCCceEEEecCC------c---EEEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCce
Q 038104 412 QSFKNGWFRTGDVGVIHPDG------Y---LEIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482 (567)
Q Consensus 412 ~~~~~~~~~TGD~~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 482 (567)
+.|..+||+|||+|+++++| + +++.||.||+||++|.+|+|.+||++|.++|+|.+++|++++++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 45568999999999999998 5 69999999999999999999999999999999999999999988888899
Q ss_pred eEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCC-ccccEEEEeC--CCCCCCCCccchHH
Q 038104 483 CAFISVKTNSAGKTDDVNEADILSYCRENLSRF-MVPKKVVILP--ELPKTATGKIQKFQ 539 (567)
Q Consensus 483 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~v~--~~P~t~~GKv~r~~ 539 (567)
+++|+.. +... ....+.+++++++++.++.+ .+|..+.+++ +||+|+ ||++|..
T Consensus 374 ~a~v~~~-~~~~-~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 374 IVEVELS-DLST-DNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEC-TTCC-CCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEc-Cccc-cchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999987 4310 00112678999999999888 8999999999 999999 9999864
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.7e-47 Score=390.23 Aligned_cols=329 Identities=19% Similarity=0.222 Sum_probs=270.3
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhh---hhccCCCCCEEEEecch-HhhhhHHHHHHHHhhCceeeee
Q 038104 180 HDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLI---LGWEMGSAPVYLWSLPM-FHCNGWTFTWGVAARGGTNVCL 255 (567)
Q Consensus 180 ~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 255 (567)
..++++++++|||||||.||+|.++|+++........ ..+++.++|+++...|+ +|..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4567899999999999999999999999876554332 35788999999999998 5777777778888999999988
Q ss_pred CCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccc--cCCCceEEEEcCCCCCHHHHHHHH-HhCCeeeccccccc
Q 038104 256 RNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPPASLLEEIE-LLGFHVTHAYGLTE 332 (567)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~yG~tE 332 (567)
+..+++.+++.|+++++|++.++|+++..|++....... .+++++.+++||+++++++.+.+. .+++++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 888999999999999999999999999999876433222 257999999999999999999998 56999999999999
Q ss_pred cCCC-ccc-cccccccCCCCCchhhhhccccCc--eeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChh
Q 038104 333 ATGP-ALV-CEWQSSWNQLPKPDQAKLKARQGI--SILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEE 408 (567)
Q Consensus 333 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~G~--~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~ 408 (567)
+++. +.. +.. ...|. +.++. .++|+|.+++.+++.| +.|||+++|.
T Consensus 249 ~~g~~~~~~~~~----------------~~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~----------- 298 (443)
T 2y4o_A 249 VMGPGVACECVE----------------TKDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL----------- 298 (443)
T ss_dssp TTEEEEEEECTT----------------TCCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES-----------
T ss_pred hcCCeEEeccCC----------------CCCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC-----------
Confidence 8543 222 210 00233 33444 7888987778888877 7899999983
Q ss_pred hhhhcccCCcccCCceEEEecC-CcE-----EEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCce
Q 038104 409 ATSQSFKNGWFRTGDVGVIHPD-GYL-----EIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESP 482 (567)
Q Consensus 409 ~~~~~~~~~~~~TGD~~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~ 482 (567)
+.+.|..+||+|||+|+++++ |++ ++.||.||+|+++|.+|+|.+||++|.++|+|.+++|++++++..++.+
T Consensus 299 -t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~ 377 (443)
T 2y4o_A 299 -TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRL 377 (443)
T ss_dssp -SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEE
T ss_pred -CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceE
Confidence 334556789999999999999 986 8999999999999999999999999999999999999998887778889
Q ss_pred eEEEEeec--CCCCCCCCCCHHHHHHHHHhhCCCC-ccccEEEEe--CCCCCCCCCccchHHHH
Q 038104 483 CAFISVKT--NSAGKTDDVNEADILSYCRENLSRF-MVPKKVVIL--PELPKTATGKIQKFQLR 541 (567)
Q Consensus 483 ~~~v~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GKv~r~~l~ 541 (567)
+++|+..+ +..+ ...+.++++++++++|+.| .+|..|.++ ++||+|++||++|...+
T Consensus 378 ~a~v~~~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 378 DLAVELRSEAAASV--TDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEEEEECHHHHTTC--CHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEEEEECCcccccc--hhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 99998865 3200 0245678999999999876 599888888 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=9.3e-47 Score=385.60 Aligned_cols=328 Identities=17% Similarity=0.173 Sum_probs=269.6
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHhhHh---hhhccCCCCCEEEEecch-HhhhhHHHHHHHHhhCceeeee
Q 038104 180 HDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSL---ILGWEMGSAPVYLWSLPM-FHCNGWTFTWGVAARGGTNVCL 255 (567)
Q Consensus 180 ~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~---~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 255 (567)
..++++++++|||||||.||+|.++|+++....... ...+++.++|+++..+|+ +|..++...+.++..|+++++.
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 456789999999999999999999999987655433 235688999999999998 6777777788888999999988
Q ss_pred CCCCHHHHHHHHHhcCcceeecchHHHHHHHhcCCcccc--cCCCceEEEEcCCCCCHHHHHHHH-HhCCeeeccccccc
Q 038104 256 RNTTAYDMYRNISQHRVTHMCCAPIVFNILLQAKPEERK--EIASPVQILTGGAPPPASLLEEIE-LLGFHVTHAYGLTE 332 (567)
Q Consensus 256 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~--~l~~l~~~~~~g~~l~~~~~~~~~-~~~~~i~~~yG~tE 332 (567)
+..+++.+++.|+++++|++.++|+++..|++....... .+++++.+++||+++++++.+.+. .+++++++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 888999999999999999999999999999876432222 257899999999999999999998 56999999999999
Q ss_pred cCCC-ccc-cccccccCCCCCchhhhhccccCceeeeecceEEeeCCCCCCcCCCCcceeEEEEecCccchhccCChhhh
Q 038104 333 ATGP-ALV-CEWQSSWNQLPKPDQAKLKARQGISILTLADVDVKNLDTMSSVPRDGKTMGEIVLRGSSIMKGYLKNEEAT 410 (567)
Q Consensus 333 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~ 410 (567)
+++. +.. +... ....+.+.++. .++|+|.+++.+++.| +.|||+++|. +
T Consensus 247 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 247 VMGPGVASECVET--------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTEEEEEECCTTT--------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeeEEecCCC--------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 8443 222 2100 01123333444 7888987778888877 7899999982 3
Q ss_pred hhcccCCcccCCceEEEec-CCcE-----EEEccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeE
Q 038104 411 SQSFKNGWFRTGDVGVIHP-DGYL-----EIKDRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCA 484 (567)
Q Consensus 411 ~~~~~~~~~~TGD~~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~ 484 (567)
.+.|.++||+|||+|++++ +|++ ++.||.||+|+++|.+|+|.+||++|.++|+|.+++|++++++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 3456689999999999998 6985 899999999999999999999999999999999999999888777888999
Q ss_pred EEEeecCCCCCCCCCCHHHHHHHHHhhCCCC-ccccEEEEe--CCCCCCCCCccchHH
Q 038104 485 FISVKTNSAGKTDDVNEADILSYCRENLSRF-MVPKKVVIL--PELPKTATGKIQKFQ 539 (567)
Q Consensus 485 ~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~p~~i~~v--~~~P~t~~GKv~r~~ 539 (567)
+|+..++... ...+.+++++++++.|+.| .+|..|.++ ++||+|+ ||++|..
T Consensus 378 ~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAP--DTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTT--CHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccc--hhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9988755310 0134578999999999988 599888888 5999999 9999975
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=7.8e-29 Score=247.01 Aligned_cols=236 Identities=18% Similarity=0.089 Sum_probs=178.1
Q ss_pred CCCCCcEEEEeccCCCCCCceEEechHHHHHHhhH---hhhhccCCCCCEEEEecch-HhhhhHHHHHHHHhhCceeeee
Q 038104 180 HDEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLS---LILGWEMGSAPVYLWSLPM-FHCNGWTFTWGVAARGGTNVCL 255 (567)
Q Consensus 180 ~~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~---~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 255 (567)
..++++++++|||||||.||+|.++|+++...... ....+++.++|+++...|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 46678999999999999999999999999887764 3455678899999999999 99999888777788888 6666
Q ss_pred CCCCHH-----------------------HHHHHHHhcCcceeecchHHHHHHHhcCCcccccCCCceEEEEcCCCCCHH
Q 038104 256 RNTTAY-----------------------DMYRNISQHRVTHMCCAPIVFNILLQAKPEERKEIASPVQILTGGAPPPAS 312 (567)
Q Consensus 256 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~l~~l~~~~~~g~~l~~~ 312 (567)
..+++. .+++.|+++++|++.++|+++..|++........++++|.+++||++++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 677777 788899999999999999999999877443345677999999999999999
Q ss_pred HHHHHH-Hh--CCeeeccccccccCCCccccccccccCCCCCchhhhhccccCce------eeeecceEEeeCCCCCCcC
Q 038104 313 LLEEIE-LL--GFHVTHAYGLTEATGPALVCEWQSSWNQLPKPDQAKLKARQGIS------ILTLADVDVKNLDTMSSVP 383 (567)
Q Consensus 313 ~~~~~~-~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~~i~~~~~~~~~~ 383 (567)
+++.+. +. ++++++.||+||+++++..+.. ..+|.+ .++. .++|+|.+++.+++
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp 309 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTVE 309 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBCC
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCCC
Confidence 999998 65 8999999999999866543320 136777 6776 89999987899999
Q ss_pred CCCcceeEEEEecCccchhccCChhhhhhcccCCcccCCceEEEecC--C-------cEEEEccCCceeeeCce
Q 038104 384 RDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPD--G-------YLEIKDRSKDVIISGGE 448 (567)
Q Consensus 384 ~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~--g-------~l~~~GR~~d~i~~~G~ 448 (567)
.| +.|||++++... +.+ --+|+|||++...+. | .+..++|.++..++.|.
T Consensus 310 ~G--~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 310 YG--ERGNVIVTHLSP------------WAF-YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp TT--CEEEEEEEEEET------------TEE-EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CC--CceEEEEEEcCc------------ccc-cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 88 899999997421 111 123899999988653 2 24456666766666663
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.55 E-value=7.1e-15 Score=117.23 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=73.8
Q ss_pred ccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCC-CC
Q 038104 437 DRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLS-RF 515 (567)
Q Consensus 437 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~ 515 (567)
||.||+|+++|.+++|.+||++|.++|+|.++++++++++.+++.+++++++ ++... ....+.+++.+.+++.+. .+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~-~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFT-DDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCC-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccc-cchhHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999888888778899999988 54310 001133455555555543 23
Q ss_pred ccccEEEEeC--CCCCCCCCccchH
Q 038104 516 MVPKKVVILP--ELPKTATGKIQKF 538 (567)
Q Consensus 516 ~~p~~i~~v~--~~P~t~~GKv~r~ 538 (567)
.++..+.+++ +||+| +||++|.
T Consensus 79 ~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 79 LVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCCE
T ss_pred CCceEEEEECCCCccCC-CCceEEE
Confidence 4455788888 89999 9999884
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.54 E-value=7.7e-15 Score=117.33 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=73.5
Q ss_pred ccCCceeeeCceeechHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCCC-
Q 038104 437 DRSKDVIISGGENISSVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSRF- 515 (567)
Q Consensus 437 GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~- 515 (567)
.|.||+|+++|.+++|.+||++|.++|+|.++++++++++..++.+.++|+..++... ......++.+.+++.+..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~--~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTD--DYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecccc--ccchhhhhHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999998876521 1112244555555544322
Q ss_pred ccccEEEEeC--CCCCCCCCccch
Q 038104 516 MVPKKVVILP--ELPKTATGKIQK 537 (567)
Q Consensus 516 ~~p~~i~~v~--~~P~t~~GKv~r 537 (567)
.++..+.+++ +|||| +||++|
T Consensus 79 gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCC
T ss_pred CCccceEEEcCCeecCC-CCCcch
Confidence 3455677764 79999 799988
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.84 E-value=3.1e-08 Score=101.18 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=51.5
Q ss_pred cceeEEEEecCccchhccCChhhhhhcccCCcccCCceEEEec----CCcEEEEccCCceeeeCceeechHHHHHHHHcC
Q 038104 387 KTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHP----DGYLEIKDRSKDVIISGGENISSVELENVLFRH 462 (567)
Q Consensus 387 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 462 (567)
|+.+||+++..+ |.|+ |++||+.++.. ..++.|.||.++++.+.|+++++.+||++|.+.
T Consensus 384 G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 384 GCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred CceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 378999999753 4444 99999999986 467999999999999999999999999999864
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.84 E-value=3.6e-08 Score=100.40 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=58.4
Q ss_pred CcCCCCcceeEEEEecCccchhccCChhhhhhcccCCcccCCceEEEecC----CcEEEEccCCceeeeCceeechHHHH
Q 038104 381 SVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHPD----GYLEIKDRSKDVIISGGENISSVELE 456 (567)
Q Consensus 381 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE 456 (567)
+++.| +.+||+++... |.|+ |++||+.++... .++.|.||.++++.+.|+++++.+||
T Consensus 387 eve~G--~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~ 448 (581)
T 4epl_A 387 QVKIG--EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQ 448 (581)
T ss_dssp GCCTT--CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred HcCCC--CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHH
Confidence 34444 78999999753 4444 999999999752 57899999999999999999999999
Q ss_pred HHHHcC------C--CceEEEEEe
Q 038104 457 NVLFRH------P--RVLEAAVVA 472 (567)
Q Consensus 457 ~~l~~~------~--~v~~~~v~~ 472 (567)
+++.+. . .|.|..+..
T Consensus 449 ~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 449 LSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred HHHHHHHHhhcccCCeEEEEEEec
Confidence 988752 2 466777655
No 41
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.81 E-value=3.8e-08 Score=100.61 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=58.2
Q ss_pred CcCCCCcceeEEEEecCccchhccCChhhhhhcccCCcccCCceEEEec----CCcEEEEccCCceeeeCceeechHHHH
Q 038104 381 SVPRDGKTMGEIVLRGSSIMKGYLKNEEATSQSFKNGWFRTGDVGVIHP----DGYLEIKDRSKDVIISGGENISSVELE 456 (567)
Q Consensus 381 ~~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE 456 (567)
+++.| +.+||+++.. .|.|+ |++||++++.. ..++.|.||.++++.+.|+++++.+||
T Consensus 392 eVe~G--~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~ 453 (609)
T 4b2g_A 392 HVEVG--KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQ 453 (609)
T ss_dssp GCCTT--CEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHH
T ss_pred HcCCC--CeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHH
Confidence 34444 7899999864 35555 99999999974 468999999999999999999999999
Q ss_pred HHHHcC------CC--ceEEEEEe
Q 038104 457 NVLFRH------PR--VLEAAVVA 472 (567)
Q Consensus 457 ~~l~~~------~~--v~~~~v~~ 472 (567)
+++.+. .+ |.|..+..
T Consensus 454 ~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 454 KAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp HHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred HHHHHHHHhhhccCCeEEEEEEec
Confidence 988842 23 56766653
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=94.08 E-value=0.6 Score=46.41 Aligned_cols=92 Identities=8% Similarity=0.019 Sum_probs=76.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--hHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPN--IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
..+|.+.+...+..++..+...|+.++|++...+|- ....+..+++++..|+..++.++ .+++.+...++..++.++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 469999999999889888888899999999988874 34455567888999999887754 477899999999999999
Q ss_pred EEcccchHHHHHHhh
Q 038104 116 FVDCQYVQLAREALK 130 (567)
Q Consensus 116 i~~~~~~~~~~~~~~ 130 (567)
+..+..+..+.+...
T Consensus 183 ~~~P~~~~~l~~~~~ 197 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQ 197 (436)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHH
Confidence 999888777766544
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.92 E-value=0.75 Score=45.73 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=75.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCh--HHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNI--PAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
..+|...+...+..++..+...|++++|++...+|.+ ...+...++++..|+..++.+. .+.+.+...++..++.++
T Consensus 108 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 186 (437)
T 2y27_A 108 VGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDII 186 (437)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEE
Confidence 4689999998888888888888999999999888853 3445567888899999887665 478999999999999999
Q ss_pred EEcccchHHHHHHhh
Q 038104 116 FVDCQYVQLAREALK 130 (567)
Q Consensus 116 i~~~~~~~~~~~~~~ 130 (567)
++.+..+..+.+...
T Consensus 187 ~~~Ps~~~~l~~~~~ 201 (437)
T 2y27_A 187 MVTPSYMLSIADEIE 201 (437)
T ss_dssp EECHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHH
Confidence 999888777765543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.84 E-value=0.76 Score=45.79 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=74.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCh--HHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNI--PAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
..+|...+...+..++..+...|++++|++...+|-+ ...+...++++..|+..++++.. +.+.+...++..++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 4689999998888888888888999999999888853 34455678888999998877654 78899999999999999
Q ss_pred EEcccchHHHHHHh
Q 038104 116 FVDCQYVQLAREAL 129 (567)
Q Consensus 116 i~~~~~~~~~~~~~ 129 (567)
++.+..+..+.+..
T Consensus 189 ~~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 189 LVTPSYMLNLIDEM 202 (443)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHH
Confidence 99988777666544
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=84.36 E-value=8.5 Score=38.75 Aligned_cols=97 Identities=7% Similarity=0.088 Sum_probs=72.3
Q ss_pred cCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChH-HHHHHHHHhhhccceeeeccC
Q 038104 27 YGNRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIP-AMYEMHFAVPMAEAVLNTINV 96 (567)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~ 96 (567)
.++.+|++.. +..+|.+.+...+..+... .++.++|++...+|-.- -.+..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 3566776552 1468999888777665544 48899999988887643 22334677888999888765
Q ss_pred CCChHHHHHHHHhcCceEEEEcccchHHHHH
Q 038104 97 RLDAKNVASILRHSEAKVFFVDCQYVQLARE 127 (567)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (567)
..+++.+...+++.++.++.+.+.....+.+
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 5789999999999999999998887766554
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=84.06 E-value=17 Score=36.97 Aligned_cols=99 Identities=6% Similarity=-0.053 Sum_probs=73.0
Q ss_pred cCCceEEEe-C--------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChH--HHHH-HHHHhhhccceeeec
Q 038104 27 YGNRTSIIY-E--------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIP--AMYE-MHFAVPMAEAVLNTI 94 (567)
Q Consensus 27 ~p~~~a~~~-~--------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~--~~~~-~~lA~~~~G~~~v~l 94 (567)
.|+.+|++. . +..+|.+.+...+...... .+++++|++...+|-+- .+.. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 356666654 1 1469999888777665544 37889999888887653 3333 478888999998876
Q ss_pred cCCCChHHHHHHHHhcCceEEEEcccchHHHHHHh
Q 038104 95 NVRLDAKNVASILRHSEAKVFFVDCQYVQLAREAL 129 (567)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (567)
+ ..+++.+...+++.++.++...+.....+....
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 4 578899999999999999999888777665543
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=82.75 E-value=15 Score=37.51 Aligned_cols=98 Identities=10% Similarity=-0.021 Sum_probs=72.4
Q ss_pred CCceEEEe-C--------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChH--HHHH-HHHHhhhccceeeecc
Q 038104 28 GNRTSIIY-E--------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIP--AMYE-MHFAVPMAEAVLNTIN 95 (567)
Q Consensus 28 p~~~a~~~-~--------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~--~~~~-~~lA~~~~G~~~v~l~ 95 (567)
++.+|++. . +..+|.+.+...+..++.. .++.++|++...+|-.. .+.. .+++.+..|+..+..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 46666654 2 1469999988777666554 47899999998877543 3332 4678888998887664
Q ss_pred CCCChHHHHHHHHhcCceEEEEcccchHHHHHHh
Q 038104 96 VRLDAKNVASILRHSEAKVFFVDCQYVQLAREAL 129 (567)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (567)
..++..+...++..++.++...+.....+.+..
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 299 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA 299 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechHHHHHHHhch
Confidence 567888999999999999999888776665543
No 48
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=82.67 E-value=20 Score=37.15 Aligned_cols=88 Identities=16% Similarity=0.059 Sum_probs=67.5
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCh--HHHHH-HHHHhhhccceeeeccCCCChHHHHHHHHhcCceE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNI--PAMYE-MHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKV 114 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (567)
..+|.+.+...+......+ ++.++|++...+|-. .++.. .+++++..|+..+..+ ..+...+...++..++.+
T Consensus 202 V~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 277 (617)
T 3rg2_A 202 IPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNV 277 (617)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcE
Confidence 5799998887776665544 788999999988844 44433 4788888898888765 457888899999999999
Q ss_pred EEEcccchHHHHHHh
Q 038104 115 FFVDCQYVQLAREAL 129 (567)
Q Consensus 115 ii~~~~~~~~~~~~~ 129 (567)
+...+.....+.+..
T Consensus 278 ~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 278 TALVPPAVSLWLQAL 292 (617)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEcchHHHHHHHHhh
Confidence 999988777666544
No 49
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=81.36 E-value=7 Score=39.99 Aligned_cols=96 Identities=8% Similarity=0.125 Sum_probs=70.8
Q ss_pred CceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHH--HHHHHHHhhhccceeeeccCC
Q 038104 29 NRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPA--MYEMHFAVPMAEAVLNTINVR 97 (567)
Q Consensus 29 ~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~~ 97 (567)
+.+|++.. +..+|.+.+...+......+...+++++|++...+|-.-. +...+++.+ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 67776652 2569999988776665544333588999998888876433 333456777 999888775 5
Q ss_pred CChHHHHHHHHhcCceEEEEcccchHHHH
Q 038104 98 LDAKNVASILRHSEAKVFFVDCQYVQLAR 126 (567)
Q Consensus 98 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (567)
.+++.+...+++.++.+++..+..+..+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 78899999999999999999887766554
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=80.05 E-value=17 Score=36.80 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=65.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHH--HHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAM--YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
..+|.+.+...+..++..+ +++++|++...+|-.-.+ ...+++++ .|+..+.. +..++..+...++..++.++
T Consensus 188 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 4699999887776665544 889999999888875433 23345555 88887766 46789999999999999999
Q ss_pred EEcccchHHHHHH
Q 038104 116 FVDCQYVQLAREA 128 (567)
Q Consensus 116 i~~~~~~~~~~~~ 128 (567)
.+.+.....+...
T Consensus 263 ~~~P~~~~~l~~~ 275 (517)
T 3r44_A 263 GAVPAILNFMRQV 275 (517)
T ss_dssp EECHHHHHHHHHS
T ss_pred EeHHHHHHHHHhC
Confidence 9988877766543
No 51
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=79.58 E-value=5 Score=38.53 Aligned_cols=87 Identities=7% Similarity=-0.118 Sum_probs=63.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCh--HHHHHHHHHhhhccceeeeccCCCChH--------------
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNI--PAMYEMHFAVPMAEAVLNTINVRLDAK-------------- 101 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 101 (567)
..+|.+.+...+..++..+...|+.++|++...+|-+ .-.....++++..|+.+++. ..++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 4689999988888777777788999999999988762 22333445558889855543 33444
Q ss_pred ---------HHHHHHHhcCceEEEEcccchHHHH
Q 038104 102 ---------NVASILRHSEAKVFFVDCQYVQLAR 126 (567)
Q Consensus 102 ---------~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (567)
.+...+++.++.++++.+.....+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6677999999999999877655543
No 52
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=77.94 E-value=18 Score=37.21 Aligned_cols=99 Identities=8% Similarity=-0.007 Sum_probs=73.3
Q ss_pred cCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHH--HHHHHhhhccceeeecc
Q 038104 27 YGNRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMY--EMHFAVPMAEAVLNTIN 95 (567)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 95 (567)
.|+.+|++.. +..+|.+.+...+..++.. .++.++|++...+|-.-.+- ..+++.+..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 3566666552 1469999998877766554 47899999999888765443 33688889999988776
Q ss_pred CCC---ChHHHHHHHHhcCceEEEEcccchHHHHHH
Q 038104 96 VRL---DAKNVASILRHSEAKVFFVDCQYVQLAREA 128 (567)
Q Consensus 96 ~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (567)
+.. ++..+...++..++.++.+.......+.+.
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 277 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHH
Confidence 542 678899999999999998877766665554
No 53
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=75.26 E-value=26 Score=35.60 Aligned_cols=89 Identities=6% Similarity=0.058 Sum_probs=69.0
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHH-HHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAM-YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFF 116 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (567)
..+|.+.+...+..++..+ ++.++|++...+|-.-.+ +..++.++..|+..+..+ ..+++.+...++..++.++.
T Consensus 198 V~~sh~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVAT---GLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHHH---CCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHHc---CCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 4699999988877776654 788999988888764332 233677788898888765 67889999999999999999
Q ss_pred EcccchHHHHHHhh
Q 038104 117 VDCQYVQLAREALK 130 (567)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (567)
+.+.....+.....
T Consensus 274 ~~P~~~~~l~~~~~ 287 (549)
T 3g7s_A 274 AVPPALNVLVNTLE 287 (549)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred eCCHHHHHHHhhhh
Confidence 99888777665543
No 54
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=74.94 E-value=8 Score=36.99 Aligned_cols=83 Identities=11% Similarity=-0.101 Sum_probs=58.2
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChH-HHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIP-AMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFF 116 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (567)
..+|.+.+...+..++.. .+++++|++...+|-.- -.+..++..+..|+..+..++.... ...++..++.++.
T Consensus 55 V~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~ 128 (358)
T 4gs5_A 55 ITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTANP---LAGLDHADFDFVA 128 (358)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSCT---TTTCSSCCCSEEE
T ss_pred EEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccccH---HHHHHHhCCeEEE
Confidence 579999988777665544 47899999988887653 2334455667788887777665433 4457788999998
Q ss_pred EcccchHHHH
Q 038104 117 VDCQYVQLAR 126 (567)
Q Consensus 117 ~~~~~~~~~~ 126 (567)
..+..+..+.
T Consensus 129 ~~P~~l~~ll 138 (358)
T 4gs5_A 129 MVPMQLQSIL 138 (358)
T ss_dssp ECHHHHHHHH
T ss_pred cChHHHHHhh
Confidence 8777655544
No 55
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=74.24 E-value=14 Score=37.70 Aligned_cols=89 Identities=4% Similarity=-0.019 Sum_probs=66.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHH-HHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPA-MYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFF 116 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (567)
..+|.+.+...+......+...++.++|++...+|-.-. .+...++.+..|+..+..+ ..+++.+...+++.++.+++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEE
Confidence 468998887766555444444578899998888876532 2345567788999888764 57889999999999999999
Q ss_pred EcccchHHHHH
Q 038104 117 VDCQYVQLARE 127 (567)
Q Consensus 117 ~~~~~~~~~~~ 127 (567)
+.+.....+..
T Consensus 287 ~~P~~~~~l~~ 297 (550)
T 3rix_A 287 LVPTLFSFFAK 297 (550)
T ss_dssp ECHHHHHHHHH
T ss_pred eCcHHHHHHHh
Confidence 98887665543
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=72.16 E-value=26 Score=35.55 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=65.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHH-HHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAM-YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFF 116 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii 116 (567)
..+|.+.+...+.... .....++.++|++...+|-.-.+ +...++++..|+..+..++..+++.+...++..++.++.
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 4689888765433211 11234788999988888764322 234567788999998877667899999999999999999
Q ss_pred EcccchHHHHHHh
Q 038104 117 VDCQYVQLAREAL 129 (567)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (567)
..+..+..+.+..
T Consensus 273 ~~P~~~~~l~~~~ 285 (541)
T 1v25_A 273 GVPTVWLALADYL 285 (541)
T ss_dssp ECHHHHHHHHHHH
T ss_pred cchHHHHHHHhhh
Confidence 9888777666544
No 57
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=71.98 E-value=22 Score=35.68 Aligned_cols=99 Identities=11% Similarity=0.170 Sum_probs=71.9
Q ss_pred cCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCC--CCCCEEEEEcCChHHH--HHHHHHhhhccceeee
Q 038104 27 YGNRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNM--PKHSVVSVLAPNIPAM--YEMHFAVPMAEAVLNT 93 (567)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~--~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~ 93 (567)
.|+.+|++.. +..+|.+.+...+..++. ..++ .++|++...+|-.-.+ ...+++.+..|+..+.
T Consensus 151 ~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~ 227 (504)
T 1t5h_X 151 EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVV 227 (504)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEE
T ss_pred CCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEe
Confidence 4567766542 146888888776655543 3467 7889888888765433 2456788889999887
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcccchHHHHHHh
Q 038104 94 INVRLDAKNVASILRHSEAKVFFVDCQYVQLAREAL 129 (567)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (567)
.+ ..++..+...+++.++.+++..+..+..+....
T Consensus 228 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 262 (504)
T 1t5h_X 228 VE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAA 262 (504)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhh
Confidence 65 477889999999999999999888777766543
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=70.42 E-value=11 Score=37.94 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=64.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHH-HHHHHHHhhhccceeeeccCC--CChHHHHHHHHhcCceE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPA-MYEMHFAVPMAEAVLNTINVR--LDAKNVASILRHSEAKV 114 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (567)
..+|.+.+...+...... .+++++|++...+|-+.. .+..+++++..|+..+.++.. .++..+...+++.++.+
T Consensus 162 v~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 468998888766555443 578999999988886532 234578888999998887653 57888999999999999
Q ss_pred EEEcccchHH
Q 038104 115 FFVDCQYVQL 124 (567)
Q Consensus 115 ii~~~~~~~~ 124 (567)
+...+.....
T Consensus 239 ~~~~P~~~~~ 248 (512)
T 3fce_A 239 WTSTPSFAEM 248 (512)
T ss_dssp EEECHHHHHH
T ss_pred EEecHHHHHH
Confidence 9988776544
No 59
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=68.41 E-value=39 Score=33.88 Aligned_cols=85 Identities=11% Similarity=-0.021 Sum_probs=60.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHH--HHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAM--YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
..+|.+.+...+..+... .++.++|++...+|-.-.+ ...+.+++..|..+++ . ..+++.+...++..++.++
T Consensus 178 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~-~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVDA---WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-A-KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S-SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHHh---hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-c-ccCHHHHHHHHHHHCCcEE
Confidence 469999988777666554 4789999998888864332 2333344445554443 3 6789999999999999999
Q ss_pred EEcccchHHHHH
Q 038104 116 FVDCQYVQLARE 127 (567)
Q Consensus 116 i~~~~~~~~~~~ 127 (567)
...+.....+..
T Consensus 253 ~~~p~~~~~l~~ 264 (509)
T 3ivr_A 253 AEFAPMLGNILD 264 (509)
T ss_dssp EEETTHHHHHHH
T ss_pred EecHHHHHHHHh
Confidence 988887666554
No 60
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=68.20 E-value=25 Score=36.05 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=66.7
Q ss_pred CCceEEEe-C--------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHH--HHHHHhhhccceeeeccC
Q 038104 28 GNRTSIIY-E--------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMY--EMHFAVPMAEAVLNTINV 96 (567)
Q Consensus 28 p~~~a~~~-~--------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~~ 96 (567)
++.+|++. . +..+|.+ +........ ....+++++|++...+|-+..+- ..+++.+..|+..+..+.
T Consensus 205 ~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~ 281 (570)
T 3c5e_A 205 SQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLL 281 (570)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECC
T ss_pred CCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecC
Confidence 45666654 1 1468888 443211111 14468899999888888754433 346778889988887764
Q ss_pred -CCChHHHHHHHHhcCceEEEEcccchHHHH
Q 038104 97 -RLDAKNVASILRHSEAKVFFVDCQYVQLAR 126 (567)
Q Consensus 97 -~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (567)
..++..+...++..++.+++..+.....+.
T Consensus 282 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 282 PKFDPLVILKTLSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp SSCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEeccHHHHHHHH
Confidence 678999999999999999999887665543
No 61
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=68.03 E-value=15 Score=36.95 Aligned_cols=85 Identities=11% Similarity=0.059 Sum_probs=64.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHH-HHHHHHHhhhccceeeeccCC--CChHHHHHHHHhcCceE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPA-MYEMHFAVPMAEAVLNTINVR--LDAKNVASILRHSEAKV 114 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (567)
..+|.+.+...+..++.. .++.++|++...+|-+.. .+..+++++..|+..+.++.. .++..+...+++.++.+
T Consensus 161 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 469998887766655443 578899999988887543 334578888999998877653 56788999999999999
Q ss_pred EEEcccchHHH
Q 038104 115 FFVDCQYVQLA 125 (567)
Q Consensus 115 ii~~~~~~~~~ 125 (567)
++..+.....+
T Consensus 238 ~~~~P~~~~~l 248 (511)
T 3e7w_A 238 WTSTPSFVQMC 248 (511)
T ss_dssp EEECHHHHHHH
T ss_pred EEecHHHHHHH
Confidence 99988765543
No 62
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=66.90 E-value=37 Score=35.41 Aligned_cols=89 Identities=2% Similarity=-0.124 Sum_probs=64.1
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHH--HHHHHhhhccceeeeccCC---CChHHHHHHHHhcCc
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMY--EMHFAVPMAEAVLNTINVR---LDAKNVASILRHSEA 112 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~ 112 (567)
..+|.+.+...+..... ...+++++|++....|-+..+- ..+++.+..|+..+..+.. .++..+...+++.++
T Consensus 274 V~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v 351 (652)
T 1pg4_A 274 VLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351 (652)
T ss_dssp EEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTC
T ss_pred EEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCC
Confidence 45888776554422211 2257899999888887764433 4467889999999887642 467899999999999
Q ss_pred eEEEEcccchHHHHHH
Q 038104 113 KVFFVDCQYVQLAREA 128 (567)
Q Consensus 113 ~~ii~~~~~~~~~~~~ 128 (567)
.++.+.+.....+...
T Consensus 352 t~~~~~P~~~~~l~~~ 367 (652)
T 1pg4_A 352 NILYTAPTAIRALMAE 367 (652)
T ss_dssp SEEEECHHHHHHHHTT
T ss_pred eEEEeCHHHHHHHHhc
Confidence 9999988877666543
No 63
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=64.71 E-value=33 Score=34.76 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=68.5
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhh---hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC-
Q 038104 181 DEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLIL---GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR- 256 (567)
Q Consensus 181 ~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 256 (567)
.++.+|++.. .+| -.+|.+.+...+..... ..+++++|++...++-...+ +..+++++..|+..+.++
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 3556665532 222 35789988766655544 45789999999998864332 335677788888888775
Q ss_pred CCCHHHHHHHHHhcCcceeecchHHHHHH
Q 038104 257 NTTAYDMYRNISQHRVTHMCCAPIVFNIL 285 (567)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l 285 (567)
....+++...++..++..+++.......+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 46788899999999999999877654443
No 64
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=64.43 E-value=31 Score=34.57 Aligned_cols=86 Identities=13% Similarity=0.029 Sum_probs=64.6
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChH--HHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIP--AMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
..+|.+.+...+..+...+ ++.++|++...+|-.- .++..+++.+..|+..+.. +..+.+.+...+ ..++.++
T Consensus 173 V~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i-~~~~t~~ 247 (505)
T 3nyq_A 173 AVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL-GRFSTEGAAREL-NDGATML 247 (505)
T ss_dssp EEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-SSCCHHHHHHHH-TTTCCEE
T ss_pred EEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-CCCChHHHHHHH-hhCCeEE
Confidence 4799999988887776655 7889998888777532 3334578888999988766 456777777777 7789999
Q ss_pred EEcccchHHHHHH
Q 038104 116 FVDCQYVQLAREA 128 (567)
Q Consensus 116 i~~~~~~~~~~~~ 128 (567)
+..+.....+.+.
T Consensus 248 ~~~P~~~~~l~~~ 260 (505)
T 3nyq_A 248 FGVPTMYHRIAET 260 (505)
T ss_dssp EECHHHHHHHHHH
T ss_pred EehHHHHHHHHHh
Confidence 9888877666553
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=63.21 E-value=52 Score=33.53 Aligned_cols=99 Identities=7% Similarity=-0.041 Sum_probs=71.2
Q ss_pred cCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChH-HHHHHHHHhhhccceeeeccC
Q 038104 27 YGNRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIP-AMYEMHFAVPMAEAVLNTINV 96 (567)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~v~l~~ 96 (567)
.|+.+|++.. +..+|.+.+..... .....++.++|++...+|-+. -+...+++.+..|+..+..+.
T Consensus 212 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 287 (570)
T 4gr5_A 212 GPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSG 287 (570)
T ss_dssp CTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 3566776652 25688887753322 122358899999988888753 344567788889998887764
Q ss_pred -CCChHHHHHHHHhcCceEEEEcccchHHHHHHh
Q 038104 97 -RLDAKNVASILRHSEAKVFFVDCQYVQLAREAL 129 (567)
Q Consensus 97 -~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 129 (567)
..++..+...+++.++.++...+.....+.+..
T Consensus 288 ~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~ 321 (570)
T 4gr5_A 288 QNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV 321 (570)
T ss_dssp SSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc
Confidence 467889999999999999999988777666543
No 66
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=62.38 E-value=51 Score=30.93 Aligned_cols=91 Identities=7% Similarity=-0.078 Sum_probs=58.8
Q ss_pred CCceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHH
Q 038104 28 GNRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVA 104 (567)
Q Consensus 28 p~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (567)
+.++++-.++ .+=|+++-. +..+...+.+.| +++|++|.+-...+=.-..+.++|...|..++.+-|...+..-.
T Consensus 34 g~~i~~K~E~~~ptGSfK~R~--a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 34 KAKVVLKMECENPMASVKDRL--GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SSEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEeCCCCCccCcHHHH--HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 3456666544 344555432 222223334455 48898864444556666777778888898888777766556667
Q ss_pred HHHHhcCceEEEEccc
Q 038104 105 SILRHSEAKVFFVDCQ 120 (567)
Q Consensus 105 ~~l~~~~~~~ii~~~~ 120 (567)
..++..++++++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7889999999999764
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=61.54 E-value=51 Score=34.08 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=69.7
Q ss_pred CCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHH-HHHHHHhhhccceeeeccC-
Q 038104 28 GNRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAM-YEMHFAVPMAEAVLNTINV- 96 (567)
Q Consensus 28 p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~- 96 (567)
|+.+|++.. +..+|.+.+...+. .....++.++|++...+|-+.+. +..+++.+..|+..+..+.
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 566766541 14688887754332 22335789999999988875433 3446788889988877643
Q ss_pred CCChHHHHHHHHhcCceEEEEcccchHHHHHH
Q 038104 97 RLDAKNVASILRHSEAKVFFVDCQYVQLAREA 128 (567)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (567)
..+++.+...+++.++.++...+.....+.+.
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 270 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVDL 270 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc
Confidence 56889999999999999999988877766543
No 68
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=59.95 E-value=55 Score=33.31 Aligned_cols=98 Identities=6% Similarity=0.066 Sum_probs=70.5
Q ss_pred CCceEEEeC---------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHH--HHHHHHHhhhccceeeeccC
Q 038104 28 GNRTSIIYE---------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPA--MYEMHFAVPMAEAVLNTINV 96 (567)
Q Consensus 28 p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~~ 96 (567)
|+.+|++.. +..+|.+.+...+..+... ..++.++|++...+|-.-. +...+++.+..|+..+.+.+
T Consensus 175 ~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~ 252 (576)
T 3gqw_A 175 PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRT 252 (576)
T ss_dssp TTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCH
T ss_pred CCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcch
Confidence 567777652 2579999887666544322 2578999999888887543 34456777888888877664
Q ss_pred ---CCChHHHHHHHHhcCceEEEEcccchHHHHH
Q 038104 97 ---RLDAKNVASILRHSEAKVFFVDCQYVQLARE 127 (567)
Q Consensus 97 ---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (567)
..++..+...+++.++.++++.+.....+..
T Consensus 253 ~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 286 (576)
T 3gqw_A 253 QDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQR 286 (576)
T ss_dssp HHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred hHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHH
Confidence 2467789999999999999998876655543
No 69
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=59.58 E-value=56 Score=32.25 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=72.3
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhhhc---cCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeCC
Q 038104 181 DEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLILGW---EMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLRN 257 (567)
Q Consensus 181 ~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~ 257 (567)
.++.+|++.........-....+|.+.+...+......+ +. ++|++...++-...+ +..++.++..|+..+.++.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 355677665432111111336789999877776655443 54 899999888764332 3346777888988887753
Q ss_pred ----CCHHHHHHHHHhcCcceeecchHHHHHHHhc
Q 038104 258 ----TTAYDMYRNISQHRVTHMCCAPIVFNILLQA 288 (567)
Q Consensus 258 ----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~ 288 (567)
...+++...++..++..+++.......+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 3567899999999999999998877766543
No 70
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.78 E-value=65 Score=32.93 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhhh---hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC-
Q 038104 181 DEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLIL---GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR- 256 (567)
Q Consensus 181 ~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 256 (567)
.++.+|++.... .| ....+|.+.+...+..... ..+++++|++...++-.... +..+++++..|+..+.+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 456777665432 12 2457899988766655544 45899999999998865332 335677778888888775
Q ss_pred CCCHHHHHHHHHhcCcceeecch
Q 038104 257 NTTAYDMYRNISQHRVTHMCCAP 279 (567)
Q Consensus 257 ~~~~~~~~~~i~~~~~t~l~~~p 279 (567)
...++++...+++.++..+++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 46888899999999999998754
No 71
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=55.31 E-value=98 Score=26.78 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=53.1
Q ss_pred CEEEEecch--HhhhhHHHHHHHHh-hCceeeee-CCCCHHHHHHHHHhcCcceeec--c----hHH--HHHHHhcCCcc
Q 038104 225 PVYLWSLPM--FHCNGWTFTWGVAA-RGGTNVCL-RNTTAYDMYRNISQHRVTHMCC--A----PIV--FNILLQAKPEE 292 (567)
Q Consensus 225 d~~~~~~p~--~~~~g~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~--~----p~~--~~~l~~~~~~~ 292 (567)
.+++...+- .|..|...+-..+- .|..++.. ...+++++.+.+.+++++.+.. + ++. +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 344444332 67777766555554 45555554 4568899999999999997766 2 221 22222221111
Q ss_pred cccCCCceEEEEcCCCCCHHHHHHH
Q 038104 293 RKEIASPVQILTGGAPPPASLLEEI 317 (567)
Q Consensus 293 ~~~l~~l~~~~~~g~~l~~~~~~~~ 317 (567)
.+..-..+++||.++++++.+.+
T Consensus 173 --~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 --KLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp --TCGGGSEEEEESSSCCHHHHHHH
T ss_pred --CCCCCCEEEEECCCCCHHHHHHh
Confidence 11112348899999998765543
No 72
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=54.03 E-value=80 Score=32.10 Aligned_cols=84 Identities=7% Similarity=-0.012 Sum_probs=62.5
Q ss_pred EEechHHHHHHhhHhhh---hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC-CCCHHHHHHHHHhcCcceee
Q 038104 201 VVYSHRGAYLSTLSLIL---GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR-NTTAYDMYRNISQHRVTHMC 276 (567)
Q Consensus 201 v~~~~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 276 (567)
-.+|.+.+...+..... ..+++++|++...++-...+ ...+++++..|+..+.++ ....+++...++..++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 36889888766655544 45789999999988865332 334677778888888775 46778899999999999999
Q ss_pred cchHHHHHH
Q 038104 277 CAPIVFNIL 285 (567)
Q Consensus 277 ~~p~~~~~l 285 (567)
+.+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 987655443
No 73
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=52.28 E-value=88 Score=31.17 Aligned_cols=79 Identities=10% Similarity=-0.028 Sum_probs=59.9
Q ss_pred EechHHHHHHhhHhhh---hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC-CCCHHHHHHHHHhcCcceeec
Q 038104 202 VYSHRGAYLSTLSLIL---GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR-NTTAYDMYRNISQHRVTHMCC 277 (567)
Q Consensus 202 ~~~~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 277 (567)
.+|.+.+...+..... ..+++++|++...++-...+ ...+++++..|+..+.++ ....+++...+++.++..+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 5889988776655544 44789999999998865332 335677778888888775 467888999999999999998
Q ss_pred chHH
Q 038104 278 APIV 281 (567)
Q Consensus 278 ~p~~ 281 (567)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 74
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=51.31 E-value=63 Score=35.60 Aligned_cols=101 Identities=8% Similarity=0.054 Sum_probs=72.7
Q ss_pred cCCceEEEeC---------CeeeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCh--HHHHHHHHHhhhccceeeec
Q 038104 27 YGNRTSIIYE---------GARFNWLQTYDRCRRLASSLR-SLNMPKHSVVSVLAPNI--PAMYEMHFAVPMAEAVLNTI 94 (567)
Q Consensus 27 ~p~~~a~~~~---------~~~~Ty~el~~~v~~la~~L~-~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l 94 (567)
.|+.+|++.. +..+|.+.+...+........ ..++.++|++...+|-. ..+...++..+..|+..+..
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 302 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence 4677777652 257999988776655443332 34788999998888764 33445567788899888866
Q ss_pred cCCCChHHHHHHHHhcCceEEEEcccchHHHHHH
Q 038104 95 NVRLDAKNVASILRHSEAKVFFVDCQYVQLAREA 128 (567)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~ 128 (567)
+....+.+...+++.++.++...+.....+...
T Consensus 303 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 335 (979)
T 3tsy_A 303 -PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335 (979)
T ss_dssp -SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence 456788999999999999999988766655443
No 75
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=45.99 E-value=95 Score=29.20 Aligned_cols=92 Identities=9% Similarity=-0.010 Sum_probs=61.1
Q ss_pred CCceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHH
Q 038104 28 GNRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVAS 105 (567)
Q Consensus 28 p~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (567)
.-++++-.++ .+=||++= -....+.....+.-+++|.+..+-...+=.-..+.++|.++|..++.+-|...+..-..
T Consensus 49 G~~IylK~E~lnptGSfK~R-gA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 49 GAYVAVKQEMMQPTASIADR-PAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp CSEEEEEEGGGSTTSBTTHH-HHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CCEEEEEecCCCCCCCcHHH-HHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 3456665543 44555532 12223333333333678875555666666777778888999998888888777777788
Q ss_pred HHHhcCceEEEEccc
Q 038104 106 ILRHSEAKVFFVDCQ 120 (567)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (567)
.++..++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999999654
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=45.46 E-value=54 Score=33.28 Aligned_cols=87 Identities=8% Similarity=-0.102 Sum_probs=63.3
Q ss_pred eeeeHHHHHHHHHHHHHHHHh-----CCCCCCCEEEEEcCChHHH-HHHHHHhhhccceeeeccCCCChHHHHHHHHhcC
Q 038104 38 ARFNWLQTYDRCRRLASSLRS-----LNMPKHSVVSVLAPNIPAM-YEMHFAVPMAEAVLNTINVRLDAKNVASILRHSE 111 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~-----~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~ 111 (567)
..+|.+.+...+..++..+.. ..+..++++....+...+. +..++..+..|+..+........+.+...++..+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 469999999888887776642 3577788887777765433 3346677888988876554444567888999999
Q ss_pred ceEEEEcccchHH
Q 038104 112 AKVFFVDCQYVQL 124 (567)
Q Consensus 112 ~~~ii~~~~~~~~ 124 (567)
+.++...+..+..
T Consensus 273 ~t~~~~~P~~l~~ 285 (562)
T 3ite_A 273 VTHAGIVPSLLDQ 285 (562)
T ss_dssp CCEEEECHHHHHH
T ss_pred CCEEEcCHHHHhh
Confidence 9999988775443
No 77
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=45.06 E-value=61 Score=30.29 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcCChH------HHHH-HHHHhhhccceeeeccCCC------------ChHHHHHHHHhcCceEEEEc
Q 038104 60 NMPKHSVVSVLAPNIP------AMYE-MHFAVPMAEAVLNTINVRL------------DAKNVASILRHSEAKVFFVD 118 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~------~~~~-~~lA~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~ 118 (567)
-+++||+|+|++|.+. +-+- +.--+-..|..++.-+... .+++|...+..-+.++|+|.
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 4799999999999742 1111 1111234566665433211 22455555555666666664
No 78
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=43.90 E-value=66 Score=30.22 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCChHH------HHHHHHH-hhhccceeeeccCCC------------ChHHHHHHHHhcCceEEEEc
Q 038104 60 NMPKHSVVSVLAPNIPA------MYEMHFA-VPMAEAVLNTINVRL------------DAKNVASILRHSEAKVFFVD 118 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~~------~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~ 118 (567)
-+++||+|+|++|.+.- -+-.... +-..|..++.-.... ..++|...+..-++++|+|.
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 58999999999998732 1222222 224677766432211 12445555555566666664
No 79
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=41.04 E-value=1.1e+02 Score=31.72 Aligned_cols=96 Identities=5% Similarity=-0.017 Sum_probs=67.0
Q ss_pred CCCCcEEEEeccCCCCCCceEEechHHHHHHhhHhh---h-hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC
Q 038104 181 DEWDPITLNYTSGTTSAPKGVVYSHRGAYLSTLSLI---L-GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR 256 (567)
Q Consensus 181 ~~~~~a~i~~TSGtTG~pK~v~~~~~~l~~~~~~~~---~-~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~ 256 (567)
.++.+|++... ..+| ....+|.+.+...+.... . ..+++++|++...+|..... ...++.++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 34566665432 2222 234688988876655443 3 56789999999999875433 334677778888877764
Q ss_pred -CCCHHHHHHHHHhcCcceeecchH
Q 038104 257 -NTTAYDMYRNISQHRVTHMCCAPI 280 (567)
Q Consensus 257 -~~~~~~~~~~i~~~~~t~l~~~p~ 280 (567)
.+.++++...+++.++..+++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 578889999999999999988653
No 80
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=40.08 E-value=1e+02 Score=30.92 Aligned_cols=83 Identities=7% Similarity=-0.108 Sum_probs=61.9
Q ss_pred EechHHHHHHhhHhhh---hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC-CCCHHHHHHHHHhcCcceeec
Q 038104 202 VYSHRGAYLSTLSLIL---GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR-NTTAYDMYRNISQHRVTHMCC 277 (567)
Q Consensus 202 ~~~~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 277 (567)
.+|++.+...+..... ..+++++|++...++-...+ ...+++++..|+..+.++ ...++++...++..++..+++
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 5888888776655544 45789999999998865432 334677778888888775 467888999999999999998
Q ss_pred chHHHHHH
Q 038104 278 APIVFNIL 285 (567)
Q Consensus 278 ~p~~~~~l 285 (567)
.+.....+
T Consensus 127 ~~~~~~~~ 134 (529)
T 2v7b_A 127 SGALVQNV 134 (529)
T ss_dssp EGGGHHHH
T ss_pred chhhhhHH
Confidence 77655443
No 81
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=39.96 E-value=73 Score=30.39 Aligned_cols=17 Identities=6% Similarity=0.260 Sum_probs=14.6
Q ss_pred CCCCCCCEEEEEcCChH
Q 038104 59 LNMPKHSVVSVLAPNIP 75 (567)
Q Consensus 59 ~g~~~gd~V~i~~~~~~ 75 (567)
.-+++||+|+|++|.+.
T Consensus 38 ~~Lk~GD~I~ivaPSs~ 54 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAP 54 (371)
T ss_dssp CCCCTTCEEEEECSSCC
T ss_pred CCCCCcCEEEEEeCCCC
Confidence 36899999999999863
No 82
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=39.18 E-value=76 Score=29.70 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.8
Q ss_pred CCCCCCEEEEEcCChH
Q 038104 60 NMPKHSVVSVLAPNIP 75 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~ 75 (567)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4799999999999864
No 83
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=38.52 E-value=1.6e+02 Score=27.12 Aligned_cols=89 Identities=4% Similarity=-0.093 Sum_probs=54.3
Q ss_pred CceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHH
Q 038104 29 NRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVAS 105 (567)
Q Consensus 29 ~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (567)
.++++-.++ .+-+|++-. +..+...+.+.| +++|++|.. ...+=.-..+.++|...|..++.+-|...+..-..
T Consensus 31 ~~i~~K~E~~~ptgSfK~R~--a~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 31 ADIVAKLEFFNPANSVKDRI--GVAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp SEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred cEEEEEehhcCCCCcHHHHH--HHHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345554433 345666533 222223334445 367776655 44444555566677799988887766655555666
Q ss_pred HHHhcCceEEEEccc
Q 038104 106 ILRHSEAKVFFVDCQ 120 (567)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (567)
.++..++++++++..
T Consensus 108 ~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 108 LLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEeCCC
Confidence 788999999999863
No 84
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=38.47 E-value=1.7e+02 Score=26.88 Aligned_cols=89 Identities=4% Similarity=-0.075 Sum_probs=54.6
Q ss_pred CceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHH
Q 038104 29 NRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVAS 105 (567)
Q Consensus 29 ~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (567)
.++++-.++ .+-+|++--. ..+...+.+.| +++|++|.. ...+=.-..+.++|...|..++.+-|...+..-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIA--LAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 356664433 3455554322 22222333445 367776655 44455566666777889988877766554555566
Q ss_pred HHHhcCceEEEEccc
Q 038104 106 ILRHSEAKVFFVDCQ 120 (567)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (567)
.++..++++++++..
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 789999999999864
No 85
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=37.13 E-value=84 Score=22.04 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=33.2
Q ss_pred hHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCC
Q 038104 452 SVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLSR 514 (567)
Q Consensus 452 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 514 (567)
..++++.|.+.|+|.+|..+.-+ .-..+.|. ..+.+++.+.+.+.+..
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-----~D~ll~v~----------~~d~~~l~~~i~~~l~~ 62 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-----YDLIVKVE----------TDTLKDLDQFITEKIRK 62 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-----CSEEEEEE----------ESSHHHHHHHHHTTGGG
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-----CCEEEEEE----------ECCHHHHHHHHHHHhcc
Confidence 37899999999999999987411 11334443 34778888888766543
No 86
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=36.52 E-value=2.2e+02 Score=26.21 Aligned_cols=89 Identities=4% Similarity=-0.029 Sum_probs=55.6
Q ss_pred CceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHH
Q 038104 29 NRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLNM-PKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVAS 105 (567)
Q Consensus 29 ~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (567)
.++++-.++ .+-||++--. ..+...+.+.|. ++|+.|.... .+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG--ANMVWQAEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH--HHHHHHHHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 467775544 3445554432 222223344454 6777665544 355555666777799988877666555556677
Q ss_pred HHHhcCceEEEEccc
Q 038104 106 ILRHSEAKVFFVDCQ 120 (567)
Q Consensus 106 ~l~~~~~~~ii~~~~ 120 (567)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 888999999999764
No 87
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=35.29 E-value=2.6e+02 Score=25.45 Aligned_cols=89 Identities=9% Similarity=-0.019 Sum_probs=53.2
Q ss_pred CceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCC--EEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHH
Q 038104 29 NRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHS--VVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNV 103 (567)
Q Consensus 29 ~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l 103 (567)
.++++-.++ .+-||++-- +..+...+.+.| +++|+ .|.. ...+=.-..+.++|.+.|..++.+-|...+..-
T Consensus 24 ~~v~~K~E~~~ptGSfK~R~--a~~~l~~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k 100 (304)
T 1ve1_A 24 AEVWVKLEGLNPGGSIKDRP--AWYMIKDAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEER 100 (304)
T ss_dssp CEEEEEEGGGSTTSBTTHHH--HHHHHHHHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHH
T ss_pred CEEEEEecccCCCCcHHHHH--HHHHHHHHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHH
Confidence 355554433 344455422 222222333445 56777 5544 344445555667777999888777665555566
Q ss_pred HHHHHhcCceEEEEccc
Q 038104 104 ASILRHSEAKVFFVDCQ 120 (567)
Q Consensus 104 ~~~l~~~~~~~ii~~~~ 120 (567)
...++..++++++++..
T Consensus 101 ~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 101 KRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHHHTTCEEEEECTT
T ss_pred HHHHHHcCCEEEEECCC
Confidence 67888999999999765
No 88
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=35.25 E-value=1.7e+02 Score=28.56 Aligned_cols=63 Identities=11% Similarity=-0.030 Sum_probs=45.8
Q ss_pred HhCCC-CCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcc
Q 038104 57 RSLNM-PKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDC 119 (567)
Q Consensus 57 ~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 119 (567)
.+.|. ++|....+-...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 7775444444446666777777889999888777766666677788999999999974
No 89
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=35.23 E-value=1.8e+02 Score=26.94 Aligned_cols=89 Identities=9% Similarity=-0.054 Sum_probs=54.0
Q ss_pred CceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCC-EEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHH
Q 038104 29 NRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHS-VVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVA 104 (567)
Q Consensus 29 ~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd-~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~ 104 (567)
.++++-.++ .+-||++--.. ..+. .+.+.| +++|. +|.. ...+=.-..+.++|.+.|..++.+-|...+..-.
T Consensus 30 ~~v~~K~E~~~ptGSfK~R~a~-~~l~-~a~~~G~~~~~~~~vv~-assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 106 (322)
T 1z7w_A 30 GRVAAKLEMMEPCSSVKDRIGF-SMIS-DAEKKGLIKPGESVLIE-PTSGNTGVGLAFTAAAKGYKLIITMPASMSTERR 106 (322)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHTTSCCTTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred ceEEEEecccCCCCchHHHHHH-HHHH-HHHHcCCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 456665543 34445543221 1222 234455 46664 4444 4445556666677889998888776665555667
Q ss_pred HHHHhcCceEEEEccc
Q 038104 105 SILRHSEAKVFFVDCQ 120 (567)
Q Consensus 105 ~~l~~~~~~~ii~~~~ 120 (567)
..++..++++++++..
T Consensus 107 ~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 107 IILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHcCCEEEEeCCC
Confidence 7888999999999754
No 90
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=35.13 E-value=1.6e+02 Score=27.55 Aligned_cols=88 Identities=7% Similarity=-0.102 Sum_probs=53.8
Q ss_pred ceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHH
Q 038104 30 RTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASI 106 (567)
Q Consensus 30 ~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (567)
++++-.++ .+-||++--. ..+...+.+.| +++|+.|..... +=.-..+.++|...|..++.+-|...+..-...
T Consensus 43 ~v~~K~E~~~ptGSfKdR~a--~~~l~~a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 119 (343)
T 2pqm_A 43 RILVKLEYFNPMSSVKDRVG--FNIVYQAIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMI 119 (343)
T ss_dssp EEEEEEGGGSTTSBTHHHHH--HHHHHHHHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHH
T ss_pred EEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHH
Confidence 45554433 3455554422 12222233344 477776666553 444555666677899888777666555566778
Q ss_pred HHhcCceEEEEccc
Q 038104 107 LRHSEAKVFFVDCQ 120 (567)
Q Consensus 107 l~~~~~~~ii~~~~ 120 (567)
++..++++++++..
T Consensus 120 ~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 120 MKAFGAELILTEGK 133 (343)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHCCCEEEEECCC
Confidence 88999999999763
No 91
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=34.71 E-value=1.9e+02 Score=26.83 Aligned_cols=77 Identities=5% Similarity=0.049 Sum_probs=51.6
Q ss_pred eeeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEE
Q 038104 39 RFNWLQTYDRCRRLA---SSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVF 115 (567)
Q Consensus 39 ~~Ty~el~~~v~~la---~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i 115 (567)
.+++.+......... ..|...++++||+|+|+...+.-..++.+|....|+.++.++.. .++ ..+....++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 467766544433322 23445689999999999988887888888777777777665433 333 456677788877
Q ss_pred EEc
Q 038104 116 FVD 118 (567)
Q Consensus 116 i~~ 118 (567)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 753
No 92
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=34.66 E-value=1.2e+02 Score=34.59 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=69.9
Q ss_pred cCCceEEEe-C--------CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHH-HHHHHHhhhccceeeeccC
Q 038104 27 YGNRTSIIY-E--------GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAM-YEMHFAVPMAEAVLNTINV 96 (567)
Q Consensus 27 ~p~~~a~~~-~--------~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 96 (567)
.|+.+|++. . +..+|.+.+... .......++.++|++..+.+-+.+. +.-+++.+..|+..+..++
T Consensus 605 ~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~ 680 (1304)
T 2vsq_A 605 DPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADE 680 (1304)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCG
T ss_pred CCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECCh
Confidence 466666654 1 146888877532 1122235889999998888876544 3456788889999887776
Q ss_pred C--CChHHHHHHHHhcCceEEEEcccchHHHHH
Q 038104 97 R--LDAKNVASILRHSEAKVFFVDCQYVQLARE 127 (567)
Q Consensus 97 ~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 127 (567)
. .++..+...++..++.++...+.....+.+
T Consensus 681 ~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~ 713 (1304)
T 2vsq_A 681 HTLLDTERLTDLILQENVNVMFATTALFNLLTD 713 (1304)
T ss_dssp GGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHh
Confidence 3 578899999999999999998887776654
No 93
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=33.58 E-value=1.1e+02 Score=21.13 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCCceEEEEEeecCCCCCCc-eeEEEEeecCCCCCCCCCCHHHHHHHHHhhCCC
Q 038104 452 SVELENVLFRHPRVLEAAVVAMPHPQWGES-PCAFISVKTNSAGKTDDVNEADILSYCRENLSR 514 (567)
Q Consensus 452 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~-~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 514 (567)
..++.+.|.+.|+|.+|..+. |+. ..+.+. ..+.+++.+.+.+.+..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt------G~~d~l~~v~----------~~d~~~l~~~~~~~l~~ 62 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY------GVYDIVVKVE----------ADSMDKLKDFVTNTIRK 62 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS------SSCSEEEEEE----------CSSHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhCCCCeEEEEEEe------ccCCEEEEEE----------ECCHHHHHHHHHHHhcC
Confidence 378899999999999998873 222 333333 35778888888766653
No 94
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=32.69 E-value=72 Score=30.42 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=37.9
Q ss_pred HHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC-----CChHHHHHHHHhcC--ceEEEEc
Q 038104 56 LRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR-----LDAKNVASILRHSE--AKVFFVD 118 (567)
Q Consensus 56 L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~ii~~ 118 (567)
|...++++||.|.+-.+....+ ..++...|+.++.++.. .+.+.+...+...+ .++|+..
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3444678999888776654443 33456778877766532 36778888774334 6666643
No 95
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=32.27 E-value=1.1e+02 Score=28.12 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=47.8
Q ss_pred eeeHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEc-CChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceE
Q 038104 39 RFNWLQTYDRCRRL--A-SSLRSLNMPKHSVVSVLA-PNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKV 114 (567)
Q Consensus 39 ~~Ty~el~~~v~~l--a-~~L~~~g~~~gd~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (567)
.+++.+........ | +.|...++++|++|+|+. .-.+-..++.+|- ..|+.++.+. +.++ ..++++.++..
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 46776665433221 1 233456899999999996 5666777776665 5688766553 4445 55667788877
Q ss_pred EEE
Q 038104 115 FFV 117 (567)
Q Consensus 115 ii~ 117 (567)
++.
T Consensus 200 ~i~ 202 (321)
T 3tqh_A 200 CIN 202 (321)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 96
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=32.09 E-value=30 Score=31.22 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCC
Q 038104 50 RRLASSLRSLNMPKHSVVSVLAPN 73 (567)
Q Consensus 50 ~~la~~L~~~g~~~gd~V~i~~~~ 73 (567)
..+...|.++||++||+|.|++.=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 467788999999999999999874
No 97
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=30.63 E-value=3.3e+02 Score=25.55 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC-----CChHHHHHHHHhcCceEEEE
Q 038104 60 NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR-----LDAKNVASILRHSEAKVFFV 117 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~ii~ 117 (567)
++++||.|.+..+....... ++...|+.++.++.+ .+.+.+...++. +.++|++
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 67899988887776544333 445678776655443 356777777654 5666665
No 98
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=30.63 E-value=2.6e+02 Score=25.51 Aligned_cols=88 Identities=7% Similarity=-0.011 Sum_probs=54.1
Q ss_pred CceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHH
Q 038104 29 NRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVAS 105 (567)
Q Consensus 29 ~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (567)
.++++-.++ .+-||++--. ..+...+.+.| +++|++|..... +=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 25 ~~v~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~g~~vv~~ss-GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 101 (303)
T 2v03_A 25 SEVWLKLEGNNPAGSVKDRAA--LSMIVEAEKRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDNMSQERRA 101 (303)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCCcHHHHH--HHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345554433 3445554322 22222333445 467777666553 44455566667799988887777655556667
Q ss_pred HHHhcCceEEEEcc
Q 038104 106 ILRHSEAKVFFVDC 119 (567)
Q Consensus 106 ~l~~~~~~~ii~~~ 119 (567)
.++..++++++++.
T Consensus 102 ~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 102 AMRAYGAELILVTK 115 (303)
T ss_dssp HHHHTTCEEEEECT
T ss_pred HHHHcCCEEEEECC
Confidence 88999999999985
No 99
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=30.33 E-value=1.6e+02 Score=27.49 Aligned_cols=75 Identities=13% Similarity=-0.020 Sum_probs=47.3
Q ss_pred eeeeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceE
Q 038104 38 ARFNWLQTYDRCRRL---ASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKV 114 (567)
Q Consensus 38 ~~~Ty~el~~~v~~l---a~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (567)
..+++.+........ -..|.+.++++||+|+|+...++-.+++.+|- ..|+.++.+..+... + ..+++.++..
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~~--~-~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEHK--K-QDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSSTT--H-HHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHH--H-HHHHhcCCCe
Confidence 346776654222221 23455668999999999987666777777765 568877666544332 2 2445677877
Q ss_pred EE
Q 038104 115 FF 116 (567)
Q Consensus 115 ii 116 (567)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 100
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=29.96 E-value=34 Score=31.02 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCC
Q 038104 51 RLASSLRSLNMPKHSVVSVLAPN 73 (567)
Q Consensus 51 ~la~~L~~~g~~~gd~V~i~~~~ 73 (567)
.+...|.++||++||+|.|++.=
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 46778999999999999999864
No 101
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=29.95 E-value=34 Score=31.11 Aligned_cols=30 Identities=27% Similarity=0.166 Sum_probs=23.2
Q ss_pred CeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 038104 37 GARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPN 73 (567)
Q Consensus 37 ~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~ 73 (567)
+..+|-.+ +...|.++||++||+|.|++.=
T Consensus 19 ~~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 19 RELVTRDR-------LASDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CCEECHHH-------HHHHHHHHTCCTTCEEEEEECS
T ss_pred CCCcCHHH-------HHHHHHHcCCCCCCEEEEEech
Confidence 34566555 5667889999999999999864
No 102
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=29.92 E-value=1.6e+02 Score=27.61 Aligned_cols=79 Identities=11% Similarity=-0.017 Sum_probs=49.6
Q ss_pred eeeHHHHHHHH--HHHH-HHHHh-CCCCCCCEEEEEcC-ChHHHHHHHHHhhhccceee-eccCCCChHHHHHHHHhcCc
Q 038104 39 RFNWLQTYDRC--RRLA-SSLRS-LNMPKHSVVSVLAP-NIPAMYEMHFAVPMAEAVLN-TINVRLDAKNVASILRHSEA 112 (567)
Q Consensus 39 ~~Ty~el~~~v--~~la-~~L~~-~g~~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~ 112 (567)
.+++.+..... --.| ..|.+ .++++|++|+|+.. .++-.+++.+|- ..|+..+ ..+.....++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46776654321 1122 23434 48999999999997 566777777665 5687544 44444444555567778888
Q ss_pred eEEEEc
Q 038104 113 KVFFVD 118 (567)
Q Consensus 113 ~~ii~~ 118 (567)
..++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887753
No 103
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=29.58 E-value=3.6e+02 Score=25.32 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC----------CChHHHHHHHHhcCceEEEE
Q 038104 61 MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR----------LDAKNVASILRHSEAKVFFV 117 (567)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----------~~~~~l~~~l~~~~~~~ii~ 117 (567)
+++||.|.+-.|....+. -++...|+.++.++.. ...+.+...+.. +.++|+.
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 467888777666544322 3444567666555431 356777777766 5555543
No 104
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=29.56 E-value=99 Score=21.61 Aligned_cols=46 Identities=7% Similarity=-0.073 Sum_probs=32.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 038104 38 ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAV 90 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (567)
..+.+.++.+ .+.+.+..+++.|.+++..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4567766654 344446678888999999888777777777777864
No 105
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=29.43 E-value=1.8e+02 Score=29.12 Aligned_cols=87 Identities=9% Similarity=-0.081 Sum_probs=55.1
Q ss_pred ceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHH
Q 038104 30 RTSIIYEG--ARFNWLQTYDRCRRLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASI 106 (567)
Q Consensus 30 ~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (567)
++++-.++ .+=+++.-. +..+.....+.| +++|++|... ..+=.-..+.++|...|..++.+-|...+..-...
T Consensus 78 ~i~~K~E~~~ptGS~K~R~--a~~~i~~a~~~g~~~~g~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~ 154 (527)
T 3pc3_A 78 EMYAKCEFLNPGGSVKDRI--GYRMVQDAEEQGLLKPGYTIIEP-TSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSA 154 (527)
T ss_dssp EEEEEEGGGSTTSBTTHHH--HHHHHHHHHHHTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEeccCCCCCCHHHHH--HHHHHHHHHHcCCCCCCCEEEEe-CCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHH
Confidence 56665543 334444432 112222233445 5788877553 44455566667888889988877776656666788
Q ss_pred HHhcCceEEEEcc
Q 038104 107 LRHSEAKVFFVDC 119 (567)
Q Consensus 107 l~~~~~~~ii~~~ 119 (567)
++..+++++++..
T Consensus 155 ~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 155 LRTLGAKIIRTPT 167 (527)
T ss_dssp HHHTTCEEEEECT
T ss_pred HHHCCCEEEEeCC
Confidence 8999999999865
No 106
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=28.87 E-value=1e+02 Score=22.62 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHcC--------------CceEEEeCCeeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 038104 13 PLSPLTFLKRAAAVYG--------------NRTSIIYEGARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAP 72 (567)
Q Consensus 13 ~~tl~~~l~~~a~~~p--------------~~~a~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~ 72 (567)
..|+.+++++...++| ..+++...++.+.+ +.-++.||.|+|+-|
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~---------------~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW---------------DEELKDGDVVGVFPP 94 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT---------------TCBCCTTCEEEEESC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC---------------CCCCCCCCEEEEECC
Confidence 4799999999988875 44555555555541 445899999999866
No 107
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=28.18 E-value=2.8e+02 Score=26.45 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=34.3
Q ss_pred CCEEEEEcCChHHHHHHHHHhhhccceeeeccCC---CChHHHHHHHHhcCceEEEEcc
Q 038104 64 HSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR---LDAKNVASILRHSEAKVFFVDC 119 (567)
Q Consensus 64 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~~~ii~~~ 119 (567)
||.|++-.|.-..+. -++...|+.+++++.. ...+.+...+...++++|++.+
T Consensus 133 gd~V~v~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p 188 (427)
T 3ppl_A 133 TVKWICPVPGYDRHF---SITERFGFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVP 188 (427)
T ss_dssp CCEEEEEESCCHHHH---HHHHHTTCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECC
T ss_pred CCEEEEcCCCcHHHH---HHHHHcCCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECC
Confidence 899988877655433 3344567666555432 4667787777556788888653
No 108
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=28.13 E-value=3.4e+02 Score=24.54 Aligned_cols=85 Identities=8% Similarity=0.087 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC--CChH---HHHHHHHhcCceE
Q 038104 42 WLQTYDRCRRLASSLRSL--NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR--LDAK---NVASILRHSEAKV 114 (567)
Q Consensus 42 y~el~~~v~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--~~~~---~l~~~l~~~~~~~ 114 (567)
+.++.++...+-..+++. .+ ++. ..+...+...+++--|++-..|.. -+++. -++. ++...++..+.++
T Consensus 156 ~~~~~~~L~~Ld~~~~~~l~~~-~~~-~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 231 (286)
T 3gi1_A 156 AKAFKKEAEQLTEEYTQKFKKV-RSK-TFVTQHTAFSYLAKRFGLKQLGIS--GISPEQEPSPRQLKEIQDFVKEYNVKT 231 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-SCC-EEEEEESCCHHHHHHTTCEEEEEE--CSCC---CCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCC-EEEEECCchHHHHHHCCCeEeecc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 455555555555555542 33 344 445667788888888888766632 23332 3444 4555567789999
Q ss_pred EEEcccchHHHHHHhh
Q 038104 115 FFVDCQYVQLAREALK 130 (567)
Q Consensus 115 ii~~~~~~~~~~~~~~ 130 (567)
||++....++..+.+.
T Consensus 232 if~e~~~~~~~~~~la 247 (286)
T 3gi1_A 232 IFAEDNVNPKIAHAIA 247 (286)
T ss_dssp EEECTTSCTHHHHHHH
T ss_pred EEEeCCCChHHHHHHH
Confidence 9999887766665553
No 109
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=27.81 E-value=1.3e+02 Score=27.73 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccC--CCChHHH---HHHHHhcCceE
Q 038104 42 WLQTYDRCRRLASSLRSL--NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINV--RLDAKNV---ASILRHSEAKV 114 (567)
Q Consensus 42 y~el~~~v~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l---~~~l~~~~~~~ 114 (567)
+.++.++...+-..+++. .++...+..+...+...++.--+++-..|.. -+++ .-++.++ ...++..+.++
T Consensus 172 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 249 (313)
T 1toa_A 172 YQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQ--GVSTASEASAHDMQELAAFIAQRKLPA 249 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEE--CSSCSSCCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEee--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344444445554444432 3443345666777789999999988766532 2333 2355554 44556789999
Q ss_pred EEEcccchHHHHHHhh
Q 038104 115 FFVDCQYVQLAREALK 130 (567)
Q Consensus 115 ii~~~~~~~~~~~~~~ 130 (567)
||++....++..+.+.
T Consensus 250 If~e~~~~~~~~~~la 265 (313)
T 1toa_A 250 IFIESSIPHKNVEALR 265 (313)
T ss_dssp EEEETTSCTHHHHHHH
T ss_pred EEEeCCCChHHHHHHH
Confidence 9999887666555543
No 110
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=27.27 E-value=2.1e+02 Score=21.92 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeec--cCCCChHHHHH
Q 038104 52 LASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTI--NVRLDAKNVAS 105 (567)
Q Consensus 52 la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l~~ 105 (567)
.+.+|.+.|+.++..+.+...+..+.+.++-=+++.|...+.+ -+..+....+.
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 3667888899988877778778889888888888888644433 23555544433
No 111
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=26.80 E-value=4.4e+02 Score=25.44 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC---CChHHHHHHHH----h-cCceEEE
Q 038104 62 PKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR---LDAKNVASILR----H-SEAKVFF 116 (567)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~----~-~~~~~ii 116 (567)
++||.|++-.|.-..+. .++...|+.++.++.. ...+.+...++ . .++++|+
T Consensus 162 ~~Gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~ 221 (448)
T 3aow_A 162 NPGDIVVVEAPTYLAAL---QAFNFYEPQYIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVY 221 (448)
T ss_dssp CTTCEEEEEESCCHHHH---HHHHTTCCEEEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEEeCCChHHHH---HHHHHcCCEEEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEE
Confidence 56777766665533322 2233456555544332 35667777776 3 2566654
No 112
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=26.77 E-value=3.8e+02 Score=25.84 Aligned_cols=58 Identities=14% Similarity=-0.006 Sum_probs=24.0
Q ss_pred EEcCChHHHHH-HHHHhhhccceeeeccCCCChH--HHHHHHHhcCceEEEEcccchHHHH
Q 038104 69 VLAPNIPAMYE-MHFAVPMAEAVLNTINVRLDAK--NVASILRHSEAKVFFVDCQYVQLAR 126 (567)
Q Consensus 69 i~~~~~~~~~~-~~lA~~~~G~~~v~l~~~~~~~--~l~~~l~~~~~~~ii~~~~~~~~~~ 126 (567)
++..++.+.+. ++.++...|-.++..++.+... .+...+...+.+++.++....+.+.
T Consensus 101 v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~ 161 (430)
T 3ri6_A 101 LALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVE 161 (430)
T ss_dssp EEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHH
T ss_pred EEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHH
Confidence 34444443332 2333444454444444444221 1122445555665555544333333
No 113
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=26.61 E-value=1.4e+02 Score=23.54 Aligned_cols=57 Identities=7% Similarity=-0.000 Sum_probs=36.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccchH
Q 038104 64 HSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYVQ 123 (567)
Q Consensus 64 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~ 123 (567)
-|.|.+..| .....-.+..|..+|...+.+.+....+++....+..+.++ .++.+..
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~--igpnc~g 126 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEY--SFGRCIM 126 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEE--ECSCCHH
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEE--EcCCcce
Confidence 466666666 45555555567777777777777666777787777777663 3444443
No 114
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=26.05 E-value=2.1e+02 Score=26.77 Aligned_cols=62 Identities=8% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHh--CCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcc
Q 038104 55 SLRS--LNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDC 119 (567)
Q Consensus 55 ~L~~--~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 119 (567)
.|.+ .++++|++|+|+....+-..++.+|-...|+.++.++. +.+++ ..++..++..++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 3455 68999999999998777777777776443887655543 33343 445678888877543
No 115
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=25.44 E-value=1.7e+02 Score=27.43 Aligned_cols=58 Identities=5% Similarity=-0.023 Sum_probs=40.8
Q ss_pred CCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEcccch
Q 038104 64 HSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQYV 122 (567)
Q Consensus 64 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 122 (567)
.+.|.-.. .+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++....
T Consensus 76 ~~~vv~~S-sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~ 133 (346)
T 3l6b_A 76 PKAVVTHS-SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDE 133 (346)
T ss_dssp CSCEEEEC-SSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEeC-CCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 34443333 34455666677888998888777766666667888999999999986643
No 116
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=24.99 E-value=2.1e+02 Score=28.42 Aligned_cols=77 Identities=5% Similarity=-0.117 Sum_probs=57.1
Q ss_pred EechHHHHHHhhHhhh---hccCCCCCEEEEecchHhhhhHHHHHHHHhhCceeeeeC-CCCHHHHHHHHHhcCcceeec
Q 038104 202 VYSHRGAYLSTLSLIL---GWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCLR-NTTAYDMYRNISQHRVTHMCC 277 (567)
Q Consensus 202 ~~~~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 277 (567)
.+|.+.+...+..... ..+++++|++...++-...+ +..+++++..|+..+.++ ...++++...++..+++.+++
T Consensus 29 ~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~ 107 (521)
T 3l8c_A 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIA 107 (521)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEE
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEe
Confidence 4788888766665544 45788999998888764322 334677778888877775 568888999999999999887
Q ss_pred ch
Q 038104 278 AP 279 (567)
Q Consensus 278 ~p 279 (567)
..
T Consensus 108 ~~ 109 (521)
T 3l8c_A 108 IE 109 (521)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 117
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.55 E-value=2.4e+02 Score=23.96 Aligned_cols=83 Identities=4% Similarity=0.059 Sum_probs=43.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHh-------CCCCCCCEEEEEcCC----hHHHHHHHHHhhhccceeeeccCCCChHHHHHH
Q 038104 38 ARFNWLQTYDRCRRLASSLRS-------LNMPKHSVVSVLAPN----IPAMYEMHFAVPMAEAVLNTINVRLDAKNVASI 106 (567)
Q Consensus 38 ~~~Ty~el~~~v~~la~~L~~-------~g~~~gd~V~i~~~~----~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (567)
..++-.|....+..+-..+.. ..-..+-+|.+..+. .+-..+....+-..|..++.+....+.+++...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 456666665555444443332 111223356666544 344445555556789999999999999999999
Q ss_pred HHhcCceEEEEccc
Q 038104 107 LRHSEAKVFFVDCQ 120 (567)
Q Consensus 107 l~~~~~~~ii~~~~ 120 (567)
++..++++|..+..
T Consensus 135 ~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 135 VKKYQPDIVGMSAL 148 (210)
T ss_dssp HHHHCCSEEEEECC
T ss_pred HHHcCCCEEEEecc
Confidence 99999999998753
No 118
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=24.55 E-value=1.4e+02 Score=28.76 Aligned_cols=51 Identities=22% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCEEEEEcCCh-HHHH-HHHHHhhhccceeeecc
Q 038104 45 TYDRCRRLASSLRS--LNMPKHSVVSVLAPNI-PAMY-EMHFAVPMAEAVLNTIN 95 (567)
Q Consensus 45 l~~~v~~la~~L~~--~g~~~gd~V~i~~~~~-~~~~-~~~lA~~~~G~~~v~l~ 95 (567)
+..+.+++|..+.+ .++++|+.|.|..+.. .+++ .+.-++..+|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 45678888988887 4789999999999864 3333 33456778898887654
No 119
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=24.47 E-value=1.2e+02 Score=24.10 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=14.5
Q ss_pred HhhhccceeeeccCCCChHHHHHHHHhcCce
Q 038104 83 AVPMAEAVLNTINVRLDAKNVASILRHSEAK 113 (567)
Q Consensus 83 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 113 (567)
.|..+|...+.+.+....+++....+..+.+
T Consensus 89 ~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 89 EAIAIGAKTLWLQLGVINEQAAVLAREAGLS 119 (145)
T ss_dssp HHHHHTCCEEECCTTCCCHHHHHHHHTTTCE
T ss_pred HHHHcCCCEEEEcCChHHHHHHHHHHHcCCE
Confidence 3444454444444444444555555444443
No 120
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=24.37 E-value=2.1e+02 Score=26.47 Aligned_cols=77 Identities=9% Similarity=0.092 Sum_probs=49.4
Q ss_pred eeeeHHHHHHHHHH---HHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceE
Q 038104 38 ARFNWLQTYDRCRR---LASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKV 114 (567)
Q Consensus 38 ~~~Ty~el~~~v~~---la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (567)
..+++.+....... .-+.|...++++||+|+|....++-.+++.+|- ..|+.++.++. +.+.+ ..+++.++..
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 35677665432222 123445568999999999887667777777776 56887665543 34443 3567788887
Q ss_pred EEEc
Q 038104 115 FFVD 118 (567)
Q Consensus 115 ii~~ 118 (567)
++..
T Consensus 214 ~i~~ 217 (340)
T 3s2e_A 214 AVNA 217 (340)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7754
No 121
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=24.07 E-value=1.3e+02 Score=27.36 Aligned_cols=87 Identities=10% Similarity=0.113 Sum_probs=55.2
Q ss_pred eHHHHHHHHHHHHHHHHhC--CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC--CChHHH---HHHHHhcCce
Q 038104 41 NWLQTYDRCRRLASSLRSL--NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR--LDAKNV---ASILRHSEAK 113 (567)
Q Consensus 41 Ty~el~~~v~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--~~~~~l---~~~l~~~~~~ 113 (567)
.+.++.++...+-..+++. .+.++.+..+...+...+++--|++-..|..- +++. -++.++ ...++..+.+
T Consensus 137 N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~--~~~~~eps~~~l~~l~~~ik~~~v~ 214 (282)
T 3mfq_A 137 NTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQG--VSTDSEVANSDMIETVNLIIDHNIK 214 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSC--SSSCSCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccc--cCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 3455555555666655542 44445677777888888888888887666322 3332 345554 4455677999
Q ss_pred EEEEcccchHHHHHHh
Q 038104 114 VFFVDCQYVQLAREAL 129 (567)
Q Consensus 114 ~ii~~~~~~~~~~~~~ 129 (567)
+||++....++..+.+
T Consensus 215 ~if~e~~~~~~~~~~l 230 (282)
T 3mfq_A 215 AIFTESTTNPERMKKL 230 (282)
T ss_dssp EEECBTTSCTHHHHHH
T ss_pred EEEEeCCCChHHHHHH
Confidence 9999887766655544
No 122
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=23.19 E-value=1.5e+02 Score=27.12 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC--CChHH---HHHHHHhcCceE
Q 038104 42 WLQTYDRCRRLASSLRSL--NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR--LDAKN---VASILRHSEAKV 114 (567)
Q Consensus 42 y~el~~~v~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~--~~~~~---l~~~l~~~~~~~ 114 (567)
+.++.++.+.+-..+++. .++.+.+..+...+...+++--|++-..+.. -+++. -++.+ +...++..+.++
T Consensus 158 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 235 (294)
T 3hh8_A 158 LKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSAYIW--EINTEEEGTPDQISSLIEKLKVIKPSA 235 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEEEEE--SSCCSCCCCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCceeecc--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 455555555666666542 3433335666677789999999998765532 23332 34444 555566779999
Q ss_pred EEEcccchHHHHHHh
Q 038104 115 FFVDCQYVQLAREAL 129 (567)
Q Consensus 115 ii~~~~~~~~~~~~~ 129 (567)
||++....++..+.+
T Consensus 236 if~e~~~~~~~~~~i 250 (294)
T 3hh8_A 236 LFVESSVDRRPMETV 250 (294)
T ss_dssp EEEETTSCSHHHHHH
T ss_pred EEEeCCCCcHHHHHH
Confidence 999887666554444
No 123
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=23.18 E-value=2e+02 Score=26.48 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=13.6
Q ss_pred CCCCCCEEEEEcCChH
Q 038104 60 NMPKHSVVSVLAPNIP 75 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~ 75 (567)
-+++||+|+|++|.+.
T Consensus 13 ~L~~Gd~I~ivaPSs~ 28 (311)
T 1zl0_A 13 WQPIDGRVALIAPASA 28 (311)
T ss_dssp CCCCCSEEEEECCSBC
T ss_pred cCCCcCEEEEEeCCCC
Confidence 4789999999999763
No 124
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=22.94 E-value=2.6e+02 Score=26.44 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC----CChHHHHHHHHhc--CceEEEEc
Q 038104 60 NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR----LDAKNVASILRHS--EAKVFFVD 118 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~ii~~ 118 (567)
++++||.|.+..+....... ++...|+.++.++.. .+.+.+...++.. +.++|+..
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 46889988887776554432 333467776666542 4667888888764 46666654
No 125
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.15 E-value=2.3e+02 Score=26.37 Aligned_cols=55 Identities=7% Similarity=0.110 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC----CChHHHHHHHHhcCceEEEE
Q 038104 62 PKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR----LDAKNVASILRHSEAKVFFV 117 (567)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~ 117 (567)
++||.|.+..+....+.....++...|+.++.++.. .+.+.+...+.. ++++|+.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 567777665554443333333334456665555432 345666655543 4555554
No 126
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=21.83 E-value=3.6e+02 Score=24.80 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHhCC-CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEccc
Q 038104 56 LRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVDCQ 120 (567)
Q Consensus 56 L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~ 120 (567)
+.+.| ++++++|...+ .+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEPT-SGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33444 57778766644 355556666777888988887777665666677889999999999753
No 127
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.52 E-value=3.4e+02 Score=25.01 Aligned_cols=55 Identities=13% Similarity=0.083 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceeeecc--CC----CChHHHHHHHHh----cCceEEEEc
Q 038104 61 MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTIN--VR----LDAKNVASILRH----SEAKVFFVD 118 (567)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~ii~~ 118 (567)
+++||.|.+..+........ +...|+.++.++ .+ .+.+.+...++. -++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 45788777766654433333 455676666655 22 256777777764 345555553
No 128
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=21.40 E-value=2.1e+02 Score=26.83 Aligned_cols=79 Identities=9% Similarity=-0.030 Sum_probs=48.6
Q ss_pred eeeHHHHHHHHH--HHH-HHHHh-CCCCCC-CEEEEEcC-ChHHHHHHHHHhhhccceeeeccCCCCh-HHHHHHHHhcC
Q 038104 39 RFNWLQTYDRCR--RLA-SSLRS-LNMPKH-SVVSVLAP-NIPAMYEMHFAVPMAEAVLNTINVRLDA-KNVASILRHSE 111 (567)
Q Consensus 39 ~~Ty~el~~~v~--~la-~~L~~-~g~~~g-d~V~i~~~-~~~~~~~~~lA~~~~G~~~v~l~~~~~~-~~l~~~l~~~~ 111 (567)
.+++.+...... ..| ..|.+ .++++| ++|+|+.. ..+-.+++.+|- ..|+..+.+...... ++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 477766443221 122 23344 389999 99999987 567777777766 568876655433222 33445557788
Q ss_pred ceEEEEc
Q 038104 112 AKVFFVD 118 (567)
Q Consensus 112 ~~~ii~~ 118 (567)
+..++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8887754
No 129
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=21.27 E-value=2.2e+02 Score=26.55 Aligned_cols=77 Identities=10% Similarity=-0.057 Sum_probs=47.9
Q ss_pred eeeeHHHHHHHHHHH---HHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccc-eeeeccCCCChHHHHHHHHhcCce
Q 038104 38 ARFNWLQTYDRCRRL---ASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEA-VLNTINVRLDAKNVASILRHSEAK 113 (567)
Q Consensus 38 ~~~Ty~el~~~v~~l---a~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 113 (567)
..+++.+.......+ -+.|...++++||+|+|+..-.+-.+++.+|- ..|+ .++.++.. .++ ..+++..++.
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR--KHC-CDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC--HHH-HHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC--HHH-HHHHHHhCCc
Confidence 356666654321111 12345678999999999987666777777665 5787 55555432 333 4566778888
Q ss_pred EEEEc
Q 038104 114 VFFVD 118 (567)
Q Consensus 114 ~ii~~ 118 (567)
.++..
T Consensus 214 ~vi~~ 218 (352)
T 3fpc_A 214 DIINY 218 (352)
T ss_dssp EEECG
T ss_pred eEEcC
Confidence 77753
No 130
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.13 E-value=2.2e+02 Score=23.20 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=14.3
Q ss_pred HHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhcc
Q 038104 55 SLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAE 88 (567)
Q Consensus 55 ~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G 88 (567)
+|.+.|+.+...+.|...+..+.+.++-=+++.|
T Consensus 91 ~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG 124 (161)
T 1oft_A 91 WLRRAGLNRERILLLQAKDNAAALALSCEALRLG 124 (161)
T ss_dssp HHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTT
T ss_pred HHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcC
Confidence 3444444444433333334444444444444444
No 131
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=21.11 E-value=4.7e+02 Score=23.81 Aligned_cols=90 Identities=9% Similarity=-0.066 Sum_probs=53.6
Q ss_pred CCceEEEeCC--eeeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHH
Q 038104 28 GNRTSIIYEG--ARFNWLQTYDRCRRLASSLRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVAS 105 (567)
Q Consensus 28 p~~~a~~~~~--~~~Ty~el~~~v~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~ 105 (567)
..++++-.++ .+-++++--.. ..+. .+.+.| +++|.... .+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 21 g~~v~~K~E~~~ptgS~K~R~a~-~~l~-~a~~~g---~~~vv~~s-sGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~ 94 (318)
T 2rkb_A 21 GMPVFLKCENVQPSGSFKIRGIG-HFCQ-EMAKKG---CRHLVCSS-GGNAGIAAAYAARKLGIPATIVLPESTSLQVVQ 94 (318)
T ss_dssp TSCEEEEEGGGSTTSBTTHHHHH-HHHH-HHHHTT---CCEEEECC-CSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHH
T ss_pred CCeEEEEecCCCCCCCHHHHHHH-HHHH-HHHHcC---CCEEEEEC-CchHHHHHHHHHHHcCCCEEEEECCCCcHHHHH
Confidence 4467775543 33444443211 1122 222333 44454443 355556666778899988887777655566777
Q ss_pred HHHhcCceEEEEcccchH
Q 038104 106 ILRHSEAKVFFVDCQYVQ 123 (567)
Q Consensus 106 ~l~~~~~~~ii~~~~~~~ 123 (567)
.++..++++++++..+.+
T Consensus 95 ~~~~~Ga~V~~~~~~~~~ 112 (318)
T 2rkb_A 95 RLQGEGAEVQLTGKVWDE 112 (318)
T ss_dssp HHHHTTCEEEECCSSHHH
T ss_pred HHHhcCCEEEEECCCHHH
Confidence 889999999998865433
No 132
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=21.08 E-value=2.4e+02 Score=26.52 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHhCCCCCCCEEEEEcCChHHHHHHHHHhhhccc-eeeeccCCCChHHHHHHHHhcCceEEEE
Q 038104 56 LRSLNMPKHSVVSVLAPNIPAMYEMHFAVPMAEA-VLNTINVRLDAKNVASILRHSEAKVFFV 117 (567)
Q Consensus 56 L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ii~ 117 (567)
|...++++|++|+|.....+-.+++.+|- ..|+ .++.++.. .+. ..+++..++..++.
T Consensus 175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 175 VDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--ATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEC
Confidence 45568999999999988666666666665 6787 55555432 333 34566677776664
No 133
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=21.01 E-value=2.2e+02 Score=26.59 Aligned_cols=79 Identities=11% Similarity=0.025 Sum_probs=48.3
Q ss_pred eeeeHHHHHHHHHH---HHHHHHhCCCC-CCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCce
Q 038104 38 ARFNWLQTYDRCRR---LASSLRSLNMP-KHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAK 113 (567)
Q Consensus 38 ~~~Ty~el~~~v~~---la~~L~~~g~~-~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 113 (567)
..+++.+....... .-..|.+.+++ +|++|+|+....+-..++.+|- ..|+.++.+... .+++....+..++.
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISSS--NKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESS--TTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--hHHHHHHHHHcCCc
Confidence 35677664322111 11334556888 9999999987667777777766 468866555543 34444444477887
Q ss_pred EEEEcc
Q 038104 114 VFFVDC 119 (567)
Q Consensus 114 ~ii~~~ 119 (567)
.++...
T Consensus 228 ~vi~~~ 233 (357)
T 2cf5_A 228 DYVIGS 233 (357)
T ss_dssp CEEETT
T ss_pred eeeccc
Confidence 766543
No 134
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=20.85 E-value=5.1e+02 Score=24.07 Aligned_cols=54 Identities=17% Similarity=0.296 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCC-------CChHHHHHHHHhcCceEEEE
Q 038104 61 MPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVR-------LDAKNVASILRHSEAKVFFV 117 (567)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~ 117 (567)
.++||.|.+..|.-..+. .++...|+.++.++.. .+.+.+...++..++++|+.
T Consensus 108 ~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 357888877776544333 2334567666555431 46778888776556676664
No 135
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.82 E-value=2e+02 Score=26.43 Aligned_cols=87 Identities=8% Similarity=0.051 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHH---HhcCceEEE
Q 038104 42 WLQTYDRCRRLASSLRSL--NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASIL---RHSEAKVFF 116 (567)
Q Consensus 42 y~el~~~v~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l---~~~~~~~ii 116 (567)
+.++.++...+-..+++. .+ ++ +..+...+...+++--|++-..|...+--...-++.+|..++ +..+.++||
T Consensus 167 ~~~~~~~L~~Ld~~~~~~l~~~-~~-~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If 244 (312)
T 2o1e_A 167 SKEYIAKLQDLDKLYRTTAKKA-EK-KEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIY 244 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-SC-CEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-CC-CEEEEECCchHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344444444444444432 33 33 445667888888888888876654322112234566666655 456789999
Q ss_pred EcccchHHHHHHhh
Q 038104 117 VDCQYVQLAREALK 130 (567)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (567)
++....++..+.+.
T Consensus 245 ~e~~~~~~~~~~ia 258 (312)
T 2o1e_A 245 FEEIASSKVADTLA 258 (312)
T ss_dssp CSSCCCHHHHHHHH
T ss_pred EeCCCChHHHHHHH
Confidence 99887776555543
No 136
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=20.77 E-value=1.4e+02 Score=28.90 Aligned_cols=51 Identities=10% Similarity=-0.039 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCEEEEEcCCh-HHHH-HHHHHhhhccceeeecc
Q 038104 45 TYDRCRRLASSLRS--LNMPKHSVVSVLAPNI-PAMY-EMHFAVPMAEAVLNTIN 95 (567)
Q Consensus 45 l~~~v~~la~~L~~--~g~~~gd~V~i~~~~~-~~~~-~~~lA~~~~G~~~v~l~ 95 (567)
+..+..++|..|.+ .++++|+.|.|..+-. .+++ .+.-++..+|+.++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 61 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVV 61 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 46678889998887 4789999999988764 3333 33456778898877654
No 137
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=20.76 E-value=1.1e+02 Score=21.81 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred hHHHHHHHHcCCCceEEEEEeecCCCCCCceeEEEEeecCCCCCCCCCCHHHHHHHHHhhCC
Q 038104 452 SVELENVLFRHPRVLEAAVVAMPHPQWGESPCAFISVKTNSAGKTDDVNEADILSYCRENLS 513 (567)
Q Consensus 452 ~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~ 513 (567)
..++.+.|.++|+|.+|..+.-+ .-..+.|.. .+.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-----~D~ll~v~~----------~d~~~l~~~l~~~l~ 61 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-----YDLVALVRL----------KDVEELDDVVTQGIL 61 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-----SSEEEEEEE----------SSGGGHHHHCCCCCT
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-----CCEEEEEEE----------CCHHHHHHHHHHhcc
Confidence 47888999999999999987421 123344433 356667777765554
No 138
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.76 E-value=4.8e+02 Score=23.84 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=38.7
Q ss_pred CCCCCCCEEEEEc-CChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceEEEEc
Q 038104 59 LNMPKHSVVSVLA-PNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKVFFVD 118 (567)
Q Consensus 59 ~g~~~gd~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 118 (567)
.++++|++|+|.. ..++-..++.+|- ..|+.++.+.. +.+++. .++..++..++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLLK-MKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHH-HTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4899999999998 4556666666665 67887766654 344444 5567788877653
No 139
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=20.40 E-value=3.8e+02 Score=26.27 Aligned_cols=69 Identities=6% Similarity=0.004 Sum_probs=48.9
Q ss_pred HHHHHHHhCC-CCCCCEEEEEcCChHHHHHHHHHhhh----cc--ceeeeccCCCC-h------HHHHHHHHhcCceEEE
Q 038104 51 RLASSLRSLN-MPKHSVVSVLAPNIPAMYEMHFAVPM----AE--AVLNTINVRLD-A------KNVASILRHSEAKVFF 116 (567)
Q Consensus 51 ~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~ii 116 (567)
++...+.+.+ +.++++|+|.+.-+.|..+++..+.. .| ..++.++.... . +....+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4556666654 68899999999999999998877765 34 56677787765 2 2355566677777766
Q ss_pred Ecc
Q 038104 117 VDC 119 (567)
Q Consensus 117 ~~~ 119 (567)
.+-
T Consensus 84 ~~~ 86 (464)
T 3a2k_A 84 AQI 86 (464)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 140
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=20.36 E-value=3.8e+02 Score=22.38 Aligned_cols=52 Identities=4% Similarity=0.134 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEcCChH--HHHHHHHHhhhccceeeeccCCC--ChHHHHHHHHhcCc
Q 038104 60 NMPKHSVVSVLAPNIP--AMYEMHFAVPMAEAVLNTINVRL--DAKNVASILRHSEA 112 (567)
Q Consensus 60 g~~~gd~V~i~~~~~~--~~~~~~lA~~~~G~~~v~l~~~~--~~~~l~~~l~~~~~ 112 (567)
|+.+|+.++|..+++. -.++..++. ..|..++.++... +.+.+..+.+..+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~~~ 71 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAETRGL 71 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHHhcCC
Confidence 7999999999999974 455555555 6676667676654 77777777665443
No 141
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=20.26 E-value=2.9e+02 Score=25.62 Aligned_cols=78 Identities=8% Similarity=0.027 Sum_probs=49.6
Q ss_pred eeHHHHHHHHHHH---HHHHHhC--CCCCCCEEEEEcCChHHHHHHHHHhhhccceeeeccCCCChHHHHHHHHhcCceE
Q 038104 40 FNWLQTYDRCRRL---ASSLRSL--NMPKHSVVSVLAPNIPAMYEMHFAVPMAEAVLNTINVRLDAKNVASILRHSEAKV 114 (567)
Q Consensus 40 ~Ty~el~~~v~~l---a~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (567)
+++.+........ -+.|.+. ++++|++|+|.....+-.+++.+|-..-|+.++.++. +.++ ..++++.++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 6776655333222 2334443 7899999999988777777777777554666665543 3333 34567788888
Q ss_pred EEEccc
Q 038104 115 FFVDCQ 120 (567)
Q Consensus 115 ii~~~~ 120 (567)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 776443
Done!