BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038105
(791 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 18/228 (7%)
Query: 401 LTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLT----LFLNDNELTTITDDFFQS 456
LT P+++ ++L L N + +LP+ H LT L+LNDN+L T+ F+
Sbjct: 28 LTAIPSNIPA--DTKKLDLQSNKLSSLPSKAF--HRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 457 MPCLTVLKMSDIRMLQQLPMGI-SKLVSLQLLDISNTEVEELPEEL-KALVNLKCLNLDW 514
+ L L ++D + LQ LP+G+ +LV+L L + +++ LP + +L L L+L +
Sbjct: 84 LKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 515 TDVLVEVPQQLLSNFSRLRVLRMFATGIRSV-YGRFSSWYENVAEELLGLKHLEVLEITF 573
+ L +P+ + + L+ LR++ ++ V G F E +L + V E F
Sbjct: 143 NE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Query: 574 RSFEAYQTFLSSQKLRSCTQAPFLY-----KFDREESIDVADLANLEQ 616
S E + + CT +Y K +E + D A E+
Sbjct: 202 DSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK 249
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 417 LSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQL 474
L L NS+ +LP L L+L N+L ++ + F + LT L +S LQ L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TNQLQSL 91
Query: 475 PMGI-SKLVSLQLLDISNTEVEELPEEL-KALVNLKCLNLDWTDVLVEVPQQLLSNFSRL 532
P G+ KL L+ L ++ +++ LP+ + L LK L L + + L VP + + L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTSL 150
Query: 533 RVL 535
+ +
Sbjct: 151 QYI 153
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 7/147 (4%)
Query: 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTIT 450
+L G+ L + A ++ + L L N + +LP +L L L +N+L ++
Sbjct: 67 YLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 451 DDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLVSLQLLDISNTEVEELPEEL-KALVNLK 508
D F + LT L ++ LQ LP G+ KL +L LD+S +++ LPE + L LK
Sbjct: 126 DGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184
Query: 509 CLNLDWTDVLVEVPQQLLSNFSRLRVL 535
L L + + L VP + + L+ +
Sbjct: 185 DLRL-YQNQLKSVPDGVFDRLTSLQYI 210
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 423 SIDNLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SK 480
S+ ++PT +PT +L L+ DN++T + F + LT L + D L LP G+ K
Sbjct: 28 SLASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDK 84
Query: 481 LVSLQLLDISNTEVEELP----EELKALVNLKCLNLDW 514
L L L +++ +++ +P + LK+L ++ LN W
Sbjct: 85 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 423 SIDNLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SK 480
S+ ++PT +PT +L L+ DN++T + F + LT L + D L LP G+ K
Sbjct: 20 SLASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDK 76
Query: 481 LVSLQLLDISNTEVEELP----EELKALVNLKCLNLDW 514
L L L +++ +++ +P + LK+L ++ LN W
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L D L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND-LTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 423 SIDNLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SK 480
S+ ++PT +PT +L L+ DN +T + F + LT L + D L LP G+ K
Sbjct: 20 SLASVPTGIPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDK 76
Query: 481 LVSLQLLDISNTEVEELP----EELKALVNLKCLNLDW 514
L L L +++ +++ +P + L++L ++ LN W
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 370 KMHDVIRDMALWITCEIEKEKEGFLVYAGSGLTEAPADV-RGWEMVRRLSLMRNSIDNLP 428
K+HD I+ E +L+ G+ L P V ++ L L+ N + +LP
Sbjct: 74 KLHD--------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 429 --TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLVSLQ 485
+L L+L N+L ++ F + LT L + D LQ LP G+ KL L+
Sbjct: 126 DGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLK 184
Query: 486 LLDISNTEVEELP----EELKALVNLKCLNLDW 514
L +++ +++ +P + L +L ++ LN W
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%)
Query: 415 RRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQ 472
R L L +N I L + PHL L LN+N ++ + F ++ L L + R L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LK 93
Query: 473 QLPMGI-SKLVSLQLLDISNTEVEELPEEL-KALVNLKCLNLDWTDVLVEVPQQLLSNFS 530
+P+G+ + L +L LDIS ++ L + + + L NLK L + D LV + + S +
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN 152
Query: 531 RLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFE 577
L L + + S+ S + +L L+HL + I SF+
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLI--VLRLRHLNINAIRDYSFK 197
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDV 108
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 109 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPA 166
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 167 GLLNGLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKM 465
A + + + +L+L R + L T P L TL L+ N+L ++ Q++P LTVL +
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDV 107
Query: 466 SDIRMLQQLPMG-ISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ 523
S R L LP+G + L LQ L + E++ LP L L+ L+L + L E+P
Sbjct: 108 SFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPA 165
Query: 524 QLLSNFSRLRVLRMFATGIRSV-YGRFSS 551
LL+ L L + + ++ G F S
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 439 LFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLVSLQLLDISNTEVEEL 497
L+L N+L + F S+ LTVL + L LP + +LV L+ L + ++ EL
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLG-TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
Query: 498 PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFA 539
P ++ L +L L LD + L +P S L +F
Sbjct: 128 PRGIERLTHLTHLALD-QNQLKSIPHGAFDRLSSLTHAYLFG 168
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 439 LFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLVSLQLLDISNTEVEEL 497
L+L+DN++T + F S+ L L + L LP+G+ L L +LD+ ++ L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 498 PEEL-KALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSV-YGRF 549
P + LV+LK L + + L E+P+ + + L L + ++S+ +G F
Sbjct: 104 PSAVFDRLVHLKELFM-CCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAF 155
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 21/143 (14%)
Query: 141 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC 197
E+A+D + L +K L+LDD+W+ LK ++ TTR V
Sbjct: 227 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF----------DSQCQILLTTRDKSVT 276
Query: 198 GR-MEDRRMFKV-ACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255
M + + V + L E E+ V + + +PE A ++ KEC G PL +
Sbjct: 277 DSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSL 332
Query: 256 IGRAMAYKKTPEEWRYAIEVLRR 278
IG + + P W Y ++ L+
Sbjct: 333 IGALL--RDFPNRWEYYLKQLQN 353
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 141 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC 197
E+A+D + L +K L+LDD+W+ LK ++ TTR V
Sbjct: 221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFD----------SQCQILLTTRDKSVT 270
Query: 198 GR-MEDRRMFKV-ACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255
M + + V + L E E+ V + + +PE A ++ KEC G PL +
Sbjct: 271 DSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKAD----LPEQAHSIIKECKGSPLVVSL 326
Query: 256 IGRAMAYKKTPEEWRYAIEVLR 277
IG + + P W Y ++ L+
Sbjct: 327 IGALL--RDFPNRWEYYLKQLQ 346
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 417 LSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470
L L RN + +LP P L TL +++N L I DD FQ+ L L++S R+
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 394 LVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNDNELTTITDD 452
L G+ LTE PA+++ +R L L N + +LP + +C L + DN +TT+ +
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 453 F 453
F
Sbjct: 312 F 312
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLK 508
L +LP I L +L++LD+S+ + LP EL + LK
Sbjct: 259 LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 405 PADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTV 462
P + ++ L L RN + +LP P L TL +++N L I DD FQ+ L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 463 LKMSDIRM----LQQLPMGISKLVSLQLL 487
L++S R+ L +P VS LL
Sbjct: 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLL 198
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 417 LSLMRNSIDNLPTVPTCPHLLTL---FLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQ 473
L L N + +LP + HL L +L N+L ++ F + L L++ + LQ
Sbjct: 88 LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQS 145
Query: 474 LPMG-ISKLVSLQLLDISNTEVEELPE 499
+P G KL +LQ L +S +++ +P
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPH 172
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 417 LSLMRNSIDNLPTVPTCPHLLTL---FLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQ 473
L L N + +LP + HL L +L N+L ++ F + L L++ + LQ
Sbjct: 88 LGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQS 145
Query: 474 LPMG-ISKLVSLQLLDISNTEVEELPE 499
+P G KL +LQ L +S +++ +P
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPH 172
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.1 bits (74), Expect = 0.68, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 10/121 (8%)
Query: 398 GSGLTEAPADV---RGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFF 454
G GL E P D+ ++ L R S D L PHL+ L L N+LT I + F
Sbjct: 17 GRGLKEIPRDIPLHTTELLLNDNELGRISSDGL--FGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 455 QSMPCLTVLKMSDIRMLQ---QLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLN 511
+ + L++ + ++ + ++ +G+ +L +L L D + V +P + L +L LN
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLTSLN 132
Query: 512 L 512
L
Sbjct: 133 L 133
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 421 RNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISK 480
N I ++ + P L +L+L +N++T IT + L L + D ++ +P+ +
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AG 173
Query: 481 LVSLQLLDISNTEVEELPEELKALVNLKCLNL 512
L LQ L +S + +L L L NL L L
Sbjct: 174 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 422 NSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKL 481
N I ++ + P L +L+L +N++T IT + L L + D ++ +P+ + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 195
Query: 482 VSLQLLDISNTEVEELPEELKALVNLKCLNL 512
LQ L +S + +L L L NL L L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 398 GSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPH--LLTLFLNDNELTTITDDFFQ 455
G GLTE P ++ E + + L +N+I +P P+ L + L++N+++ + D FQ
Sbjct: 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 456 SMPCLTVL 463
+ L L
Sbjct: 78 GLRSLNSL 85
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 398 GSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPH--LLTLFLNDNELTTITDDFFQ 455
G GLTE P ++ E + + L +N+I +P P+ L + L++N+++ + D FQ
Sbjct: 20 GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77
Query: 456 SMPCLTVL 463
+ L L
Sbjct: 78 GLRSLNSL 85
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 422 NSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKL 481
N I ++ + P L +L+L +N++T IT + L L + D ++ +P+ + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 195
Query: 482 VSLQLLDISNTEVEELPEELKALVNLKCLNL 512
LQ L +S + +L L L NL L L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 422 NSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKL 481
N I ++ + P L +L+L +N++T IT + L L + D ++ +P+ + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 195
Query: 482 VSLQLLDISNTEVEELPEELKALVNLKCLNL 512
LQ L +S + +L L L NL L L
Sbjct: 196 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 225
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 111
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 112
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 53 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 111
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE 493
P L TL L DN LTT+ F+ + L L + + + +++ SL+ LD+ +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 494 VEELPEE--LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSS 551
E E + LVNL+ LNL + L ++P L+ RL L + +G R R S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCN-LKDIPN--LTALVRLEELEL--SGNRLDLIRPGS 197
Query: 552 WYENVAEELLGLKHLEVLEITFRSFEAYQTF----LSSQKLRSCTQAPF--LYKFDR 602
+ + L L H +V I +F+ ++ LS L S F L++ +R
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 110
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 422 NSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKL 481
N I ++ + P L +L+L +N++T IT + L L + D ++ +P+ + L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AGL 172
Query: 482 VSLQLLDISNTEVEELPEELKALVNLKCLNL 512
LQ L +S + +L L L NL L L
Sbjct: 173 TKLQNLYLSKNHISDL-RALAGLKNLDVLEL 202
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 421 RNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISK 480
N I ++ + P L +L+L +N++T IT + L L + D ++ + +P+ ++
Sbjct: 119 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVPL--AR 174
Query: 481 LVSLQLLDISNTEVEELPEELKALVNLKCLNL 512
L LQ L +S + +L L+ L NL L L
Sbjct: 175 LTKLQNLYLSKNHISDL-RALRGLKNLDVLEL 205
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 471 LQQLPMGISKLVSLQLLDI-SNTEVEELPEEL---------KALVNLKCLNLDWTDV 517
L+ LP I+ L L+ L I + E+ ELPE L + LVNL+ L L+WT +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI 195
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 439 LFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEEL- 497
L+L DN L + DD F+ + LT L + R+ L SL L + V +
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 498 PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRM 537
P + L L L L + + L +P + L+ L+ LR+
Sbjct: 194 PHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRL 232
>pdb|2Q1F|A Chain A, Crystal Structure Of Chondroitin Sulfate Lyase Abc From
Bacteroides Thetaiotaomicron Wal2926
pdb|2Q1F|B Chain B, Crystal Structure Of Chondroitin Sulfate Lyase Abc From
Bacteroides Thetaiotaomicron Wal2926
Length = 1022
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 109 VVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDL 168
+ +K EK ETI KK LY ++KD ++ +F + + + + D W++ L
Sbjct: 228 IYTKGKVTEKEAETIRKKYDLYQITYKDGQVS--GVPVFXVRASEAYERXIPD-WDKDXL 284
Query: 169 KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMF 206
K G+ + + K AV + R E RR F
Sbjct: 285 TKXGIEXRAYFDLXKRIAVAYNNSEAGSPIRKEXRRKF 322
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 439 LFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEEL- 497
L+L DN L + DD F+ + LT L + R+ L SL L + V +
Sbjct: 133 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 192
Query: 498 PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRM 537
P + L L L L + + L +P + L+ L+ LR+
Sbjct: 193 PHAFRDLGRLMTLYL-FANNLSALPTEALAPLRALQYLRL 231
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM----GISKLVSLQLLDI 489
P L L L+ E+ TI D +QS+ L+ L ++ +Q L + G+S L L L+
Sbjct: 54 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVALET 112
Query: 490 SNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ +E P + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 113 NLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 13/177 (7%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE 493
P L TL L DN LTT+ F+ + L L + + + +++ SL+ LD+ +
Sbjct: 83 PSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK 142
Query: 494 VEELPEE--LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSS 551
E E + LVNL+ LNL + L ++P L+ RL L + +G R R S
Sbjct: 143 RLEYISEAAFEGLVNLRYLNLGMCN-LKDIPN--LTALVRLEELEL--SGNRLDLIRPGS 197
Query: 552 WYENVAEELLGLKHLEVLEITFRSFEAYQTF----LSSQKLRSCTQAPF--LYKFDR 602
+ + L L H +V I +F+ ++ LS L S F L++ +R
Sbjct: 198 FQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLER 254
>pdb|3EMU|A Chain A, Crystal Structure Of A Leucine Rich Repeat And Phosphatase
Domain Containing Protein From Entamoeba Histolytica
Length = 161
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 361 LEEVEDDQVKMHDVIRDMALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEM-VRRLSL 419
L+ V ++ +++D I + +I I++ KEG L+ +G+G+ +APA V + M +RLS
Sbjct: 59 LDIVSEEGHQLYDSIPNAIKFIIRSIQR-KEGVLIISGTGVNKAPAIVIAFLMYYQRLSF 117
Query: 420 M 420
+
Sbjct: 118 I 118
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 428 PTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487
PT ++ L ++ N L+ SMP L +L + + +P + L L +L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 488 DISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQ 523
D+S+ +++ +P+ + AL L ++L ++ +P+
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 438 TLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVE-E 496
TL L+ N+LT + L + +S+ R+ ++P I +L +L +L +SN
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 497 LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+P EL +L L+L+ +P + ++ F G R VY
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA--NFIAGKRYVY 574
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 110
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 452 DFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPE 499
D F + LT L +S ++ Q P + L SLQ+L++++ +++ +P+
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 428 PTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487
PT ++ L ++ N L+ SMP L +L + + +P + L L +L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 488 DISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQ 523
D+S+ +++ +P+ + AL L ++L ++ +P+
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 438 TLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVE-E 496
TL L+ N+LT + L + +S+ R+ ++P I +L +L +L +SN
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 497 LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+P EL +L L+L+ +P + ++ F G R VY
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA--NFIAGKRYVY 577
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Query: 141 EKAQDIFKTLSKKKFA---LLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC 197
E+A+D + L +K L+LDD+W+ LK ++ TTR V
Sbjct: 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----------DNQCQILLTTRDKSVT 270
Query: 198 GR-MEDRRMFKV-ACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255
M + + V + L E E+ V + +P A ++ KEC G PL +
Sbjct: 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSL 326
Query: 256 IGRAMAYKKTPEEWRYAIEVLRR 278
IG + + P W Y + L+
Sbjct: 327 IGALL--RDFPNRWAYYLRQLQN 347
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 421 RNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISK 480
N I ++ + P L +L+L +N++T IT + L L + D ++ +P+ +
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPL--AG 176
Query: 481 LVSLQLLDISNTEVEELPEELKALVNLKCLNL 512
L LQ L +S + +L L L NL L L
Sbjct: 177 LTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 207
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 134
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 452 DFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPE-ELKALVNLKCL 510
D F + LT L +S ++ Q P + L SLQ+L++S+ L K L +L+ L
Sbjct: 488 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547
Query: 511 NLDWTDVLVEVPQQLLSNFSRLRVLRM 537
+ ++ Q+L S L L +
Sbjct: 548 DYSLNHIMTSKKQELQHFPSSLAFLNL 574
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 235 IPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYAIEVLRR 278
+P A ++ KEC G PL + IG + + P W Y + L+
Sbjct: 313 LPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQN 354
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 11/131 (8%)
Query: 435 HLLTLFLNDNELTTITDDFFQSMPCLT--VLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492
++ ++L+ N+ ++ F +P L +L+ ++ + P L +L +LD+SN
Sbjct: 431 NIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
Query: 493 EVEELPEE-LKALVNLKCLNLD-------WTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544
+ + E+ L+ L NL+ L+ W P L S L +L + + G+
Sbjct: 491 NIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDE 550
Query: 545 V-YGRFSSWYE 554
+ G F + +E
Sbjct: 551 IPVGVFKNLFE 561
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 399 SGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNE-LTTITDDFFQSM 457
S +TE P+D+ + R L + + L + ++ N+ L I D F ++
Sbjct: 19 SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78
Query: 458 PCLTVLKMSDIRMLQQL-PMGISKLVSLQLLDISNTEVEELPE 499
P L +++ L + P L +LQ L ISNT ++ LP+
Sbjct: 79 PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 396 YAGSGLT-----EAPADVRGWEMVRRLSLMRN-SIDNLPTVPT------CPHLLTLFLN- 442
Y+G+ L + +DV G+ + N +I N T CP ++ FL+
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329
Query: 443 DNELTTITDDFFQSMPCLT-----VLKMSDIRMLQQLPMGISKLVSLQLLDISNTEV--E 495
D +TD F++ LT +L+M+ ++ L ++ +++ SLQ LDIS V +
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389
Query: 496 ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSV 545
E + +L LN+ +++L + + L R++VL + + I+S+
Sbjct: 390 EKKGDCSWTKSLLSLNMS-SNILTDTIFRCLP--PRIKVLDLHSNKIKSI 436
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492
P L L L+ E+ TI D +QS+ L+ L ++ +Q L +G S L SLQ L T
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET 110
Query: 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546
+ L + L LK LN+ + + SN + L L + + I+S+Y
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
>pdb|3OQ3|A Chain A, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 166
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 203 RRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQ 240
RR+ ++CL D + +EKVG + I+ +IP L++
Sbjct: 22 RRLSPLSCLKDRKDFGFPQEKVGAQQIQEAQAIPVLSE 59
>pdb|3IV6|A Chain A, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|B Chain B, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|C Chain C, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|D Chain D, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides
Length = 261
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 477 GISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRL---R 533
+ + S+ + D S ++L E L +C+ +D D+ E+P++L +F + R
Sbjct: 63 ALERGASVTVFDFSQRXCDDLAEALAD----RCVTIDLLDITAEIPKELAGHFDFVLNDR 118
Query: 534 VLRMFAT 540
++ F T
Sbjct: 119 LINRFTT 125
>pdb|4F9I|A Chain A, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
pdb|4F9I|B Chain B, Crystal Structure Of Proline Utilization A (Puta) From
Geobacter Sulfurreducens Pca
Length = 1026
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 224 VGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYA----IEVLRRS 279
VGE T E+ ++ +L + DG + +G A ++ E + +E L++
Sbjct: 143 VGETTKEAVKNLEKLRK------DGFAAVVDVLGEATLSEEEAEVYTNTYLELLEALKKE 196
Query: 280 ASEFEGL-GKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDY 320
++GL GK P L + + N A++ L+C P+D+
Sbjct: 197 QGSWKGLPGKGGDPGLDWGHAPKVNIAVKPTALFCLANPQDF 238
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 92/241 (38%), Gaps = 52/241 (21%)
Query: 446 LTTITDDFFQSMPCLTVLKMSDIRMLQQL-PMGISKLVSLQLLDISNTEVEELPEELKAL 504
L I D F ++P L +++ L + P L +LQ L ISNT ++ LP ++ +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKI 125
Query: 505 VNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK 564
+L+ + LD D N + + R G+ +E+V +L L
Sbjct: 126 HSLQKVLLDIQD-----------NINIHTIERNSFVGLS---------FESV---ILWLN 162
Query: 565 HLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRS 624
+ EI +F Q + ++++D NLE+L F
Sbjct: 163 KNGIQEIHNSAFNGTQL----------------------DELNLSDNNNLEELPNDVFH- 199
Query: 625 CGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVT---H 681
G SG + +D S Y +L K+ S NLK L L L S+T H
Sbjct: 200 -GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSH 258
Query: 682 C 682
C
Sbjct: 259 C 259
>pdb|3N8H|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3N8H|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Franc Tularensis
pdb|3QTT|A Chain A, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
pdb|3QTT|B Chain B, Crystal Structure Of Pantoate-Beta-Alanine Ligase From
Francisella Tularensis Complexed With Beta-Gamma Atp And
Beta-Alanine
Length = 264
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 673 NLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLE 715
NL S + + + EI+ +F ++ E+T I+S AKLQ+++
Sbjct: 193 NLTSTDIEIANKIYEILRQDDFSNLEELTNKINSTGAKLQYIQ 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,692,471
Number of Sequences: 62578
Number of extensions: 912515
Number of successful extensions: 2385
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 2281
Number of HSP's gapped (non-prelim): 156
length of query: 791
length of database: 14,973,337
effective HSP length: 107
effective length of query: 684
effective length of database: 8,277,491
effective search space: 5661803844
effective search space used: 5661803844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)