Query 038105
Match_columns 791
No_of_seqs 351 out of 3949
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038105.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038105hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.6E-81 1.4E-85 708.3 43.5 758 1-784 110-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.7E-59 1.7E-63 559.3 48.4 642 47-754 182-914 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-41 2.7E-46 352.5 17.9 282 54-340 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 1E-23 2.2E-28 255.7 15.9 174 392-576 96-272 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.1E-23 2.4E-28 255.4 16.0 138 404-542 156-296 (968)
6 KOG4194 Membrane glycoprotein 99.8 5.8E-22 1.3E-26 203.1 2.9 131 410-542 100-233 (873)
7 KOG4194 Membrane glycoprotein 99.8 6E-22 1.3E-26 203.0 2.5 311 393-742 106-425 (873)
8 KOG0444 Cytoskeletal regulator 99.8 2E-21 4.4E-26 200.3 -0.4 238 403-656 23-262 (1255)
9 PLN03210 Resistant to P. syrin 99.8 1.6E-18 3.4E-23 210.3 19.9 324 391-750 591-947 (1153)
10 KOG0444 Cytoskeletal regulator 99.8 8.5E-20 1.8E-24 188.5 0.9 167 400-579 91-260 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 8.7E-20 1.9E-24 179.4 -10.4 225 393-638 72-297 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 2.5E-18 5.5E-23 169.1 -4.0 122 394-517 188-309 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.5E-14 3.2E-19 162.7 16.8 168 379-580 191-358 (788)
14 KOG0617 Ras suppressor protein 99.6 3.4E-17 7.4E-22 142.4 -4.6 164 401-580 23-189 (264)
15 KOG0617 Ras suppressor protein 99.6 6E-17 1.3E-21 140.9 -5.3 170 425-637 24-194 (264)
16 KOG0618 Serine/threonine phosp 99.5 4.1E-16 8.8E-21 169.5 -4.3 229 506-744 242-487 (1081)
17 PRK04841 transcriptional regul 99.5 1.8E-12 3.9E-17 157.0 23.9 292 46-383 11-332 (903)
18 PRK15370 E3 ubiquitin-protein 99.5 7.2E-14 1.6E-18 158.4 9.2 162 391-580 180-341 (754)
19 PRK15370 E3 ubiquitin-protein 99.4 1.5E-13 3.2E-18 155.9 8.4 200 413-683 179-378 (754)
20 PRK00411 cdc6 cell division co 99.4 2.7E-11 5.8E-16 131.4 24.6 298 47-364 28-358 (394)
21 KOG0618 Serine/threonine phosp 99.4 2.4E-14 5.3E-19 155.9 -0.4 245 412-721 241-488 (1081)
22 PRK15387 E3 ubiquitin-protein 99.4 1.4E-12 3.1E-17 146.9 13.1 253 413-742 202-454 (788)
23 TIGR02928 orc1/cdc6 family rep 99.4 8.5E-11 1.8E-15 126.1 26.3 300 48-364 14-350 (365)
24 COG2909 MalT ATP-dependent tra 99.4 2.6E-11 5.7E-16 132.4 20.6 295 48-385 18-340 (894)
25 PF01637 Arch_ATPase: Archaeal 99.4 3.2E-12 6.8E-17 128.3 12.2 198 51-255 1-233 (234)
26 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.8E-18 136.2 0.4 239 392-636 49-343 (498)
27 TIGR03015 pepcterm_ATPase puta 99.3 3.5E-10 7.6E-15 115.8 23.5 183 70-260 42-242 (269)
28 TIGR00635 ruvB Holliday juncti 99.2 4.5E-10 9.7E-15 117.1 17.8 269 49-367 4-292 (305)
29 KOG4658 Apoptotic ATPase [Sign 99.2 4.1E-11 8.9E-16 138.4 8.3 146 392-541 526-676 (889)
30 PRK00080 ruvB Holliday junctio 99.2 5.2E-10 1.1E-14 117.2 15.1 276 48-366 24-312 (328)
31 KOG4237 Extracellular matrix p 99.2 2.7E-12 5.8E-17 127.1 -2.0 242 417-682 51-332 (498)
32 cd00116 LRR_RI Leucine-rich re 99.2 2.1E-11 4.5E-16 128.7 4.5 161 410-577 21-206 (319)
33 COG3899 Predicted ATPase [Gene 99.1 9.9E-10 2.1E-14 127.6 16.3 311 51-382 2-385 (849)
34 PF05729 NACHT: NACHT domain 99.1 5.3E-10 1.2E-14 105.3 11.1 144 72-225 1-164 (166)
35 KOG0532 Leucine-rich repeat (L 99.1 4.7E-12 1E-16 131.1 -3.2 193 392-629 53-248 (722)
36 COG2256 MGS1 ATPase related to 99.1 5.6E-09 1.2E-13 105.0 17.8 174 40-251 21-207 (436)
37 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.7E-15 107.3 5.2 103 412-517 19-125 (175)
38 cd00116 LRR_RI Leucine-rich re 99.1 1.3E-10 2.8E-15 122.6 5.6 164 408-578 47-235 (319)
39 PTZ00112 origin recognition co 99.0 1.6E-08 3.5E-13 111.7 20.7 209 48-260 754-986 (1164)
40 PF14580 LRR_9: Leucine-rich r 99.0 4.2E-10 9.1E-15 103.9 6.0 142 419-572 4-148 (175)
41 PRK07003 DNA polymerase III su 98.9 2.9E-08 6.2E-13 109.5 18.2 181 49-258 16-223 (830)
42 KOG1259 Nischarin, modulator o 98.9 2.3E-10 4.9E-15 109.3 1.1 133 455-629 281-413 (490)
43 PRK06893 DNA replication initi 98.9 1.1E-08 2.3E-13 101.1 12.4 156 70-260 38-207 (229)
44 COG1474 CDC6 Cdc6-related prot 98.9 1.2E-07 2.6E-12 99.2 19.2 172 48-225 16-204 (366)
45 TIGR03420 DnaA_homol_Hda DnaA 98.9 1.4E-08 3E-13 101.0 11.7 170 54-259 22-204 (226)
46 PRK14960 DNA polymerase III su 98.9 9E-08 2E-12 104.5 18.0 176 49-254 15-217 (702)
47 KOG0532 Leucine-rich repeat (L 98.8 1.9E-10 4.1E-15 119.5 -3.0 142 398-544 107-248 (722)
48 KOG3207 Beta-tubulin folding c 98.8 5.3E-10 1.1E-14 112.7 0.3 191 407-629 116-315 (505)
49 PRK14961 DNA polymerase III su 98.8 1.3E-07 2.7E-12 100.4 17.6 189 49-252 16-216 (363)
50 PRK13342 recombination factor 98.8 7.1E-08 1.5E-12 104.3 15.2 176 49-258 12-198 (413)
51 COG4886 Leucine-rich repeat (L 98.8 5.9E-09 1.3E-13 113.2 6.0 182 406-631 110-293 (394)
52 PRK14949 DNA polymerase III su 98.8 9.6E-08 2.1E-12 107.6 15.6 181 49-256 16-220 (944)
53 PRK12323 DNA polymerase III su 98.8 1.3E-07 2.8E-12 103.0 15.6 195 49-255 16-224 (700)
54 KOG2028 ATPase related to the 98.8 1.9E-07 4E-12 92.2 15.0 156 68-251 159-331 (554)
55 PRK04195 replication factor C 98.8 5.6E-07 1.2E-11 99.4 20.9 177 48-255 13-201 (482)
56 PRK08084 DNA replication initi 98.7 9.6E-08 2.1E-12 94.6 12.7 175 49-259 23-212 (235)
57 PTZ00202 tuzin; Provisional 98.7 1.2E-06 2.7E-11 90.1 20.6 164 45-225 258-435 (550)
58 PRK14963 DNA polymerase III su 98.7 2.5E-07 5.5E-12 101.1 16.7 192 49-253 14-214 (504)
59 PRK08727 hypothetical protein; 98.7 1.4E-07 3.1E-12 93.2 13.3 167 51-253 22-201 (233)
60 PRK12402 replication factor C 98.7 2.6E-07 5.6E-12 98.1 15.7 194 49-255 15-225 (337)
61 PRK09112 DNA polymerase III su 98.7 2.7E-07 5.8E-12 96.3 15.0 198 48-257 22-241 (351)
62 PRK05564 DNA polymerase III su 98.7 5.9E-07 1.3E-11 93.6 17.5 177 49-254 4-188 (313)
63 PLN03025 replication factor C 98.7 2.1E-07 4.6E-12 97.1 14.0 179 49-252 13-196 (319)
64 PRK14956 DNA polymerase III su 98.7 2.6E-07 5.7E-12 98.2 14.6 191 49-251 18-217 (484)
65 TIGR02397 dnaX_nterm DNA polym 98.7 7.1E-07 1.5E-11 95.4 18.1 183 49-257 14-219 (355)
66 PRK14957 DNA polymerase III su 98.7 5.5E-07 1.2E-11 98.6 16.9 185 49-259 16-224 (546)
67 PRK08691 DNA polymerase III su 98.7 2.9E-07 6.3E-12 101.7 14.5 193 49-254 16-218 (709)
68 PRK00440 rfc replication facto 98.7 6.7E-07 1.5E-11 94.2 17.0 176 49-253 17-200 (319)
69 PRK14962 DNA polymerase III su 98.7 1E-06 2.3E-11 95.5 18.6 183 48-260 13-223 (472)
70 PRK06645 DNA polymerase III su 98.7 8.4E-07 1.8E-11 96.5 17.6 194 49-253 21-226 (507)
71 PF14516 AAA_35: AAA-like doma 98.6 8.5E-06 1.8E-10 85.1 24.3 206 46-263 8-246 (331)
72 KOG3207 Beta-tubulin folding c 98.6 1.2E-08 2.6E-13 103.2 2.5 110 431-541 118-233 (505)
73 PF13173 AAA_14: AAA domain 98.6 7.7E-08 1.7E-12 85.6 7.5 120 71-216 2-127 (128)
74 PRK07471 DNA polymerase III su 98.6 1.3E-06 2.9E-11 91.6 17.6 196 48-256 18-238 (365)
75 COG4886 Leucine-rich repeat (L 98.6 2.1E-08 4.5E-13 109.0 4.2 171 416-629 97-269 (394)
76 PRK14964 DNA polymerase III su 98.6 9.3E-07 2E-11 95.3 16.5 179 49-252 13-213 (491)
77 PRK14951 DNA polymerase III su 98.6 7.8E-07 1.7E-11 98.7 16.3 196 49-255 16-224 (618)
78 PF13191 AAA_16: AAA ATPase do 98.6 8.3E-08 1.8E-12 92.1 7.7 47 50-96 1-49 (185)
79 PRK07994 DNA polymerase III su 98.6 5.6E-07 1.2E-11 100.0 14.9 190 49-255 16-219 (647)
80 PRK05896 DNA polymerase III su 98.6 8.4E-07 1.8E-11 97.1 15.7 195 49-258 16-223 (605)
81 PF00308 Bac_DnaA: Bacterial d 98.6 3.3E-07 7.1E-12 89.5 11.4 185 49-257 9-209 (219)
82 PRK14958 DNA polymerase III su 98.6 8.7E-07 1.9E-11 97.2 15.9 180 49-253 16-217 (509)
83 KOG1259 Nischarin, modulator o 98.6 6E-09 1.3E-13 99.8 -1.0 133 432-579 282-414 (490)
84 PF05496 RuvB_N: Holliday junc 98.6 5.4E-07 1.2E-11 85.0 11.7 175 48-256 23-221 (233)
85 cd00009 AAA The AAA+ (ATPases 98.6 3.4E-07 7.4E-12 84.2 10.2 125 52-194 1-130 (151)
86 PRK14959 DNA polymerase III su 98.6 2.1E-06 4.6E-11 94.6 17.8 181 49-260 16-225 (624)
87 PF13401 AAA_22: AAA domain; P 98.6 7.8E-08 1.7E-12 86.4 5.6 117 70-193 3-125 (131)
88 PRK14969 DNA polymerase III su 98.6 1.3E-06 2.8E-11 96.6 16.0 179 49-257 16-222 (527)
89 PRK08903 DnaA regulatory inact 98.6 5E-07 1.1E-11 89.6 11.5 171 51-260 21-203 (227)
90 PRK09111 DNA polymerase III su 98.6 1.5E-06 3.2E-11 96.8 16.3 197 49-256 24-233 (598)
91 PRK07940 DNA polymerase III su 98.5 2E-06 4.4E-11 91.0 16.1 172 49-254 5-211 (394)
92 TIGR00678 holB DNA polymerase 98.5 2.2E-06 4.8E-11 82.1 15.1 157 60-251 3-186 (188)
93 PRK14955 DNA polymerase III su 98.5 1.4E-06 3.1E-11 93.5 15.2 193 49-253 16-225 (397)
94 PLN03150 hypothetical protein; 98.5 1.7E-07 3.8E-12 106.5 8.6 89 436-524 420-509 (623)
95 PRK09087 hypothetical protein; 98.5 9.4E-07 2E-11 86.6 12.5 158 55-257 29-196 (226)
96 PRK05642 DNA replication initi 98.5 8.8E-07 1.9E-11 87.6 12.4 176 50-260 21-212 (234)
97 PRK13341 recombination factor 98.5 9.3E-07 2E-11 100.5 14.2 169 49-251 28-212 (725)
98 KOG2120 SCF ubiquitin ligase, 98.5 1.1E-08 2.4E-13 98.1 -1.7 84 483-576 186-272 (419)
99 PRK14952 DNA polymerase III su 98.5 4E-06 8.7E-11 92.8 17.6 197 49-260 13-224 (584)
100 PRK14970 DNA polymerase III su 98.5 4.7E-06 1E-10 89.2 17.4 178 49-251 17-204 (367)
101 PRK07764 DNA polymerase III su 98.5 3.1E-06 6.8E-11 97.5 16.9 173 49-252 15-217 (824)
102 TIGR01242 26Sp45 26S proteasom 98.5 1.9E-06 4E-11 91.9 14.2 172 50-250 123-328 (364)
103 PRK08451 DNA polymerase III su 98.5 5.2E-06 1.1E-10 90.5 17.6 179 49-256 14-218 (535)
104 PRK07133 DNA polymerase III su 98.5 4.5E-06 9.7E-11 93.5 17.0 189 49-257 18-221 (725)
105 PRK06305 DNA polymerase III su 98.4 5.6E-06 1.2E-10 89.9 16.8 178 49-256 17-223 (451)
106 PRK14954 DNA polymerase III su 98.4 5.3E-06 1.1E-10 92.6 16.7 191 49-251 16-223 (620)
107 PRK14953 DNA polymerase III su 98.4 9.7E-06 2.1E-10 88.6 18.2 179 49-257 16-221 (486)
108 PF13855 LRR_8: Leucine rich r 98.4 3.1E-07 6.7E-12 69.4 4.5 58 435-493 2-60 (61)
109 PRK14950 DNA polymerase III su 98.4 8.1E-06 1.7E-10 92.1 17.6 194 49-256 16-221 (585)
110 KOG4341 F-box protein containi 98.4 2.4E-08 5.3E-13 100.4 -2.3 282 413-725 139-442 (483)
111 KOG1909 Ran GTPase-activating 98.4 1.6E-07 3.5E-12 92.6 3.1 191 432-659 28-251 (382)
112 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 4.9E-12 70.2 3.1 56 459-515 2-59 (61)
113 KOG4341 F-box protein containi 98.4 4.2E-08 9E-13 98.8 -1.3 110 647-767 318-437 (483)
114 PLN03150 hypothetical protein; 98.4 5.8E-07 1.3E-11 102.3 7.7 107 459-576 419-527 (623)
115 PRK14971 DNA polymerase III su 98.4 9.7E-06 2.1E-10 91.1 17.2 179 49-253 17-219 (614)
116 PRK03992 proteasome-activating 98.4 7.7E-06 1.7E-10 87.5 15.7 171 50-249 132-336 (389)
117 COG3903 Predicted ATPase [Gene 98.4 5.8E-07 1.2E-11 91.6 6.1 291 70-384 13-315 (414)
118 PF05621 TniB: Bacterial TniB 98.3 2.8E-05 6E-10 77.3 17.6 200 48-253 33-258 (302)
119 PRK14087 dnaA chromosomal repl 98.3 6.3E-06 1.4E-10 89.4 14.2 168 71-258 141-321 (450)
120 PRK06647 DNA polymerase III su 98.3 1.8E-05 4E-10 87.8 18.0 193 49-255 16-219 (563)
121 PRK14948 DNA polymerase III su 98.3 1.7E-05 3.6E-10 89.2 17.7 195 49-256 16-222 (620)
122 cd01128 rho_factor Transcripti 98.3 1.2E-06 2.6E-11 86.5 7.6 102 62-165 7-115 (249)
123 PRK05563 DNA polymerase III su 98.3 2.2E-05 4.8E-10 87.6 18.3 190 48-252 15-216 (559)
124 KOG1859 Leucine-rich repeat pr 98.3 1.1E-08 2.3E-13 109.5 -7.7 158 405-578 102-268 (1096)
125 KOG2120 SCF ubiquitin ligase, 98.3 5.2E-08 1.1E-12 93.6 -2.5 185 458-683 185-374 (419)
126 TIGR02903 spore_lon_C ATP-depe 98.3 1E-05 2.3E-10 91.3 15.2 203 49-259 154-398 (615)
127 KOG2543 Origin recognition com 98.3 1.4E-05 3E-10 80.3 13.9 171 48-224 5-193 (438)
128 KOG0989 Replication factor C, 98.3 2.5E-06 5.5E-11 83.0 7.8 190 48-258 35-233 (346)
129 PRK06620 hypothetical protein; 98.3 1E-05 2.2E-10 78.6 12.1 161 48-255 16-188 (214)
130 PF05673 DUF815: Protein of un 98.3 3.7E-05 8.1E-10 73.8 15.6 49 47-95 25-76 (249)
131 PRK14965 DNA polymerase III su 98.3 1.9E-05 4E-10 88.7 15.9 194 49-257 16-222 (576)
132 PRK14088 dnaA chromosomal repl 98.2 1.5E-05 3.2E-10 86.5 14.4 182 51-255 108-304 (440)
133 KOG0531 Protein phosphatase 1, 98.2 2.6E-07 5.6E-12 100.5 0.8 153 407-578 90-246 (414)
134 TIGR02639 ClpA ATP-dependent C 98.2 5.8E-06 1.3E-10 96.1 11.9 155 49-225 182-359 (731)
135 PHA02544 44 clamp loader, smal 98.2 2.6E-05 5.6E-10 81.8 15.8 146 48-223 20-172 (316)
136 KOG1909 Ran GTPase-activating 98.2 1.1E-06 2.3E-11 87.0 4.8 192 408-629 26-255 (382)
137 TIGR03345 VI_ClpV1 type VI sec 98.2 1.3E-05 2.8E-10 93.8 14.6 180 49-250 187-390 (852)
138 TIGR00362 DnaA chromosomal rep 98.2 1.9E-05 4.2E-10 85.5 14.9 161 71-255 136-309 (405)
139 PTZ00361 26 proteosome regulat 98.2 9.3E-06 2E-10 86.8 11.6 172 50-250 184-389 (438)
140 PRK00149 dnaA chromosomal repl 98.2 1.7E-05 3.7E-10 87.0 13.9 160 71-254 148-320 (450)
141 COG1222 RPT1 ATP-dependent 26S 98.2 5E-05 1.1E-09 75.9 15.4 198 51-277 153-393 (406)
142 PTZ00454 26S protease regulato 98.2 3.9E-05 8.5E-10 81.6 15.4 172 50-250 146-351 (398)
143 KOG2227 Pre-initiation complex 98.2 8.9E-05 1.9E-09 76.7 17.0 206 48-260 149-376 (529)
144 PRK11331 5-methylcytosine-spec 98.2 1.3E-05 2.9E-10 84.4 11.5 111 48-165 174-284 (459)
145 TIGR02881 spore_V_K stage V sp 98.2 2.1E-05 4.5E-10 79.6 12.7 155 50-228 7-195 (261)
146 PRK07399 DNA polymerase III su 98.1 0.00011 2.3E-09 75.9 17.2 196 49-255 4-220 (314)
147 PRK09376 rho transcription ter 98.1 4.2E-06 9.2E-11 86.0 6.7 103 60-164 158-267 (416)
148 COG3267 ExeA Type II secretory 98.1 0.00018 3.9E-09 68.9 16.8 185 70-259 50-248 (269)
149 TIGR03689 pup_AAA proteasome A 98.1 3.6E-05 7.9E-10 83.5 14.0 165 49-226 182-380 (512)
150 COG2255 RuvB Holliday junction 98.1 6.4E-05 1.4E-09 72.7 13.8 169 49-254 26-221 (332)
151 KOG0531 Protein phosphatase 1, 98.1 4.9E-07 1.1E-11 98.3 -0.9 128 411-544 71-200 (414)
152 PRK05707 DNA polymerase III su 98.1 0.00011 2.3E-09 76.3 16.2 156 70-256 21-203 (328)
153 PRK14086 dnaA chromosomal repl 98.1 0.00011 2.3E-09 81.0 16.1 162 71-256 314-488 (617)
154 TIGR02880 cbbX_cfxQ probable R 98.0 6.2E-05 1.3E-09 76.7 13.2 157 49-227 22-211 (284)
155 CHL00181 cbbX CbbX; Provisiona 98.0 0.00012 2.6E-09 74.6 15.1 158 49-228 23-213 (287)
156 PRK12422 chromosomal replicati 98.0 5.1E-05 1.1E-09 82.1 13.0 154 71-250 141-307 (445)
157 CHL00095 clpC Clp protease ATP 98.0 2.5E-05 5.4E-10 92.0 11.6 178 49-248 179-379 (821)
158 TIGR01241 FtsH_fam ATP-depende 98.0 0.0001 2.3E-09 81.9 15.5 179 49-255 55-266 (495)
159 PF10443 RNA12: RNA12 protein; 98.0 0.00024 5.1E-09 73.9 16.7 203 54-268 1-290 (431)
160 PRK11034 clpA ATP-dependent Cl 98.0 4.8E-05 1E-09 87.3 12.6 155 49-224 186-362 (758)
161 PRK10865 protein disaggregatio 98.0 7.7E-05 1.7E-09 87.7 14.6 154 49-224 178-354 (857)
162 TIGR03346 chaperone_ClpB ATP-d 98.0 6.9E-05 1.5E-09 88.6 14.0 155 49-225 173-350 (852)
163 TIGR00767 rho transcription te 97.9 4.4E-05 9.5E-10 79.2 9.7 94 70-165 167-267 (415)
164 PRK10536 hypothetical protein; 97.9 8.4E-05 1.8E-09 72.4 11.1 55 49-107 55-109 (262)
165 PRK08769 DNA polymerase III su 97.9 0.0004 8.7E-09 71.3 16.2 180 56-256 11-208 (319)
166 CHL00176 ftsH cell division pr 97.9 0.00032 7E-09 79.1 16.3 172 49-248 183-386 (638)
167 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 54.4 3.8 35 483-517 2-36 (44)
168 TIGR00602 rad24 checkpoint pro 97.8 9.3E-05 2E-09 82.7 11.3 48 48-95 83-134 (637)
169 KOG4579 Leucine-rich repeat (L 97.8 2.2E-06 4.8E-11 72.9 -1.1 109 414-524 29-141 (177)
170 PF13177 DNA_pol3_delta2: DNA 97.8 0.00021 4.6E-09 66.1 11.8 135 53-211 1-161 (162)
171 KOG1859 Leucine-rich repeat pr 97.8 5.7E-07 1.2E-11 96.6 -6.3 127 411-542 163-291 (1096)
172 PF00004 AAA: ATPase family as 97.8 4E-05 8.7E-10 68.7 6.5 22 74-95 1-22 (132)
173 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00038 8.3E-09 74.2 14.1 171 50-249 191-395 (802)
174 COG0593 DnaA ATPase involved i 97.8 0.00013 2.9E-09 76.2 10.7 174 49-249 88-279 (408)
175 PRK08058 DNA polymerase III su 97.8 0.00063 1.4E-08 71.1 15.9 161 50-223 6-181 (329)
176 PF12799 LRR_4: Leucine Rich r 97.8 2.6E-05 5.7E-10 53.7 3.5 40 458-498 1-40 (44)
177 PRK06871 DNA polymerase III su 97.8 0.0011 2.4E-08 68.3 16.6 174 57-252 10-199 (325)
178 KOG0991 Replication factor C, 97.7 8.2E-05 1.8E-09 69.4 7.3 94 49-167 27-127 (333)
179 smart00382 AAA ATPases associa 97.7 6.5E-05 1.4E-09 68.3 6.8 90 71-167 2-92 (148)
180 COG1373 Predicted ATPase (AAA+ 97.7 0.00059 1.3E-08 73.0 13.7 140 51-221 19-164 (398)
181 COG2812 DnaX DNA polymerase II 97.7 0.00016 3.5E-09 78.0 9.0 184 49-251 16-215 (515)
182 KOG3665 ZYG-1-like serine/thre 97.6 4.2E-05 9.2E-10 86.9 4.5 104 412-517 122-232 (699)
183 PRK07993 DNA polymerase III su 97.6 0.0019 4.1E-08 67.3 16.3 175 57-252 10-200 (334)
184 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0012 2.5E-08 72.2 15.2 173 49-250 228-429 (489)
185 PRK15386 type III secretion pr 97.6 8.6E-05 1.9E-09 77.5 6.2 80 411-501 51-134 (426)
186 PRK06090 DNA polymerase III su 97.6 0.0024 5.2E-08 65.6 16.1 175 57-256 11-201 (319)
187 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0012 2.6E-08 66.7 13.9 55 56-119 9-63 (262)
188 KOG2982 Uncharacterized conser 97.6 4E-05 8.7E-10 74.2 2.9 99 416-517 49-158 (418)
189 KOG0744 AAA+-type ATPase [Post 97.6 0.00058 1.3E-08 67.2 10.8 82 71-164 177-261 (423)
190 COG1223 Predicted ATPase (AAA+ 97.6 0.0017 3.7E-08 61.9 13.2 172 50-250 122-319 (368)
191 TIGR01243 CDC48 AAA family ATP 97.6 0.0012 2.5E-08 77.4 15.2 173 49-250 453-657 (733)
192 PRK12608 transcription termina 97.5 0.00061 1.3E-08 70.4 10.9 106 57-164 119-231 (380)
193 KOG1514 Origin recognition com 97.5 0.0035 7.5E-08 68.6 16.3 201 48-259 395-624 (767)
194 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.7E-09 65.5 6.0 102 413-515 43-150 (233)
195 KOG4579 Leucine-rich repeat (L 97.5 2.2E-05 4.8E-10 67.0 -0.4 107 435-544 28-137 (177)
196 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.5E-10 87.6 1.0 138 434-576 122-262 (699)
197 TIGR01243 CDC48 AAA family ATP 97.5 0.00095 2.1E-08 78.1 12.6 172 50-251 179-382 (733)
198 KOG2982 Uncharacterized conser 97.4 4.9E-05 1.1E-09 73.6 1.5 86 481-576 70-158 (418)
199 COG5238 RNA1 Ran GTPase-activa 97.4 7.8E-05 1.7E-09 71.3 2.7 192 432-659 28-252 (388)
200 PRK08116 hypothetical protein; 97.4 0.00023 5.1E-09 71.7 6.3 103 71-193 114-220 (268)
201 TIGR00763 lon ATP-dependent pr 97.4 0.0016 3.5E-08 76.4 14.0 161 49-224 320-505 (775)
202 PF07693 KAP_NTPase: KAP famil 97.4 0.0046 9.9E-08 65.2 16.3 74 54-127 1-80 (325)
203 KOG0743 AAA+-type ATPase [Post 97.4 0.036 7.9E-07 58.0 21.8 151 72-262 236-415 (457)
204 KOG0734 AAA+-type ATPase conta 97.4 0.0012 2.7E-08 69.3 11.2 45 51-95 306-361 (752)
205 KOG0741 AAA+-type ATPase [Post 97.4 0.0042 9E-08 65.4 14.9 163 70-260 537-716 (744)
206 PRK15386 type III secretion pr 97.4 0.00028 6.1E-09 73.7 6.3 134 431-599 49-186 (426)
207 KOG0730 AAA+-type ATPase [Post 97.4 0.0032 7E-08 68.4 14.2 170 49-249 434-636 (693)
208 PRK07261 topology modulation p 97.4 0.00045 9.7E-09 64.7 6.9 66 73-163 2-67 (171)
209 PRK08118 topology modulation p 97.4 0.00043 9.4E-09 64.4 6.7 36 72-107 2-37 (167)
210 KOG0728 26S proteasome regulat 97.3 0.005 1.1E-07 58.3 13.3 167 51-242 148-349 (404)
211 PRK08181 transposase; Validate 97.3 0.00043 9.3E-09 69.4 6.9 78 63-164 101-178 (269)
212 KOG2228 Origin recognition com 97.3 0.0033 7.3E-08 62.5 12.7 171 49-224 24-219 (408)
213 PRK04132 replication factor C 97.3 0.0039 8.5E-08 71.9 15.2 152 76-252 569-727 (846)
214 PRK06964 DNA polymerase III su 97.3 0.01 2.2E-07 61.6 17.0 89 153-255 132-224 (342)
215 PRK09361 radB DNA repair and r 97.3 0.00094 2E-08 66.1 9.1 54 61-118 12-66 (225)
216 PF00448 SRP54: SRP54-type pro 97.3 0.00044 9.4E-09 66.1 6.3 89 71-162 1-92 (196)
217 COG0470 HolB ATPase involved i 97.3 0.0011 2.4E-08 69.9 10.1 143 50-213 2-170 (325)
218 PF10236 DAP3: Mitochondrial r 97.3 0.0064 1.4E-07 62.8 15.1 49 205-253 258-306 (309)
219 COG0466 Lon ATP-dependent Lon 97.3 0.0027 5.7E-08 69.8 12.6 157 48-225 322-509 (782)
220 KOG0736 Peroxisome assembly fa 97.3 0.013 2.7E-07 64.9 17.6 93 49-165 672-776 (953)
221 KOG2035 Replication factor C, 97.3 0.0086 1.9E-07 58.0 14.3 208 50-280 14-262 (351)
222 PRK10787 DNA-binding ATP-depen 97.3 0.0016 3.4E-08 75.7 11.3 163 48-225 321-507 (784)
223 KOG1644 U2-associated snRNP A' 97.3 0.00033 7.2E-09 64.3 4.5 82 459-544 43-127 (233)
224 TIGR02237 recomb_radB DNA repa 97.3 0.001 2.2E-08 65.0 8.4 49 69-121 10-58 (209)
225 PRK12377 putative replication 97.2 0.0051 1.1E-07 60.9 13.1 73 71-163 101-173 (248)
226 KOG1969 DNA replication checkp 97.2 0.00067 1.5E-08 74.1 7.3 74 69-165 324-399 (877)
227 cd01393 recA_like RecA is a b 97.2 0.0025 5.4E-08 63.2 11.1 94 69-163 17-124 (226)
228 PF04665 Pox_A32: Poxvirus A32 97.2 0.00056 1.2E-08 66.5 6.1 37 71-110 13-49 (241)
229 cd01394 radB RadB. The archaea 97.2 0.0019 4.2E-08 63.5 10.1 51 61-114 8-59 (218)
230 PRK04296 thymidine kinase; Pro 97.2 0.00031 6.7E-09 67.1 4.2 113 72-195 3-117 (190)
231 TIGR02639 ClpA ATP-dependent C 97.2 0.004 8.7E-08 72.7 13.7 48 48-95 453-508 (731)
232 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0016 3.5E-08 59.1 8.2 117 72-195 3-139 (159)
233 KOG0727 26S proteasome regulat 97.2 0.0058 1.2E-07 58.0 11.9 162 51-237 157-352 (408)
234 COG2884 FtsE Predicted ATPase 97.2 0.0032 6.9E-08 57.5 9.8 124 70-200 27-203 (223)
235 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0032 6.9E-08 74.7 13.0 62 48-112 564-633 (852)
236 COG0542 clpA ATP-binding subun 97.2 0.0025 5.5E-08 71.9 11.3 153 51-224 172-346 (786)
237 KOG0731 AAA+-type ATPase conta 97.2 0.0047 1E-07 69.3 13.2 176 50-252 312-520 (774)
238 PHA00729 NTP-binding motif con 97.2 0.002 4.4E-08 61.9 9.0 36 59-95 6-41 (226)
239 COG2607 Predicted ATPase (AAA+ 97.2 0.0019 4.2E-08 61.1 8.4 114 49-192 60-181 (287)
240 KOG0735 AAA+-type ATPase [Post 97.1 0.0021 4.5E-08 70.1 9.8 161 70-256 430-616 (952)
241 KOG0739 AAA+-type ATPase [Post 97.1 0.0084 1.8E-07 58.5 12.4 173 50-250 134-335 (439)
242 COG1875 NYN ribonuclease and A 97.1 0.00071 1.5E-08 67.9 5.4 54 51-105 226-279 (436)
243 smart00763 AAA_PrkA PrkA AAA d 97.1 0.0016 3.4E-08 67.2 8.1 48 48-95 50-102 (361)
244 COG4608 AppF ABC-type oligopep 97.1 0.0015 3.2E-08 63.9 7.5 127 70-201 38-177 (268)
245 KOG0652 26S proteasome regulat 97.1 0.017 3.7E-07 55.2 14.2 166 50-240 172-371 (424)
246 PF03215 Rad17: Rad17 cell cyc 97.1 0.0024 5.3E-08 70.1 10.0 57 48-109 18-78 (519)
247 PRK06526 transposase; Provisio 97.1 0.00051 1.1E-08 68.5 4.3 25 71-95 98-122 (254)
248 TIGR02012 tigrfam_recA protein 97.1 0.0018 3.8E-08 66.3 8.1 87 69-163 53-143 (321)
249 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0034 7.5E-08 62.6 10.3 94 69-163 17-125 (235)
250 PRK10865 protein disaggregatio 97.1 0.0042 9.2E-08 73.4 12.3 61 48-111 567-635 (857)
251 TIGR02902 spore_lonB ATP-depen 97.1 0.0046 1E-07 69.0 12.0 45 49-94 65-109 (531)
252 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0019 4E-08 76.0 9.3 48 48-95 565-620 (852)
253 PRK10733 hflB ATP-dependent me 97.1 0.0081 1.8E-07 68.8 14.2 172 50-249 153-356 (644)
254 PRK09354 recA recombinase A; P 97.0 0.002 4.4E-08 66.5 8.3 87 69-163 58-148 (349)
255 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0098 2.1E-07 63.9 13.4 154 70-250 544-718 (802)
256 KOG2123 Uncharacterized conser 97.0 7.6E-05 1.6E-09 71.6 -2.0 99 434-536 19-123 (388)
257 cd00983 recA RecA is a bacter 97.0 0.0021 4.6E-08 65.8 8.2 87 69-163 53-143 (325)
258 KOG1947 Leucine rich repeat pr 97.0 0.0002 4.3E-09 80.3 0.6 109 433-541 187-306 (482)
259 PF02562 PhoH: PhoH-like prote 97.0 0.0022 4.8E-08 61.0 7.4 53 53-109 4-56 (205)
260 PRK09183 transposase/IS protei 97.0 0.00063 1.4E-08 68.3 4.0 25 71-95 102-126 (259)
261 PF07728 AAA_5: AAA domain (dy 97.0 0.0006 1.3E-08 61.7 3.4 75 74-164 2-76 (139)
262 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0038 8.1E-08 62.2 9.2 58 61-123 10-68 (237)
263 cd01121 Sms Sms (bacterial rad 96.9 0.0035 7.6E-08 66.1 9.3 85 70-163 81-168 (372)
264 TIGR02238 recomb_DMC1 meiotic 96.9 0.0051 1.1E-07 63.4 10.3 69 61-130 85-157 (313)
265 COG0542 clpA ATP-binding subun 96.9 0.0014 3E-08 73.9 6.5 107 48-165 490-605 (786)
266 PRK06067 flagellar accessory p 96.9 0.0046 1E-07 61.5 9.6 97 61-163 14-130 (234)
267 PRK07132 DNA polymerase III su 96.9 0.041 8.9E-07 56.2 16.4 168 58-255 5-184 (299)
268 PRK07952 DNA replication prote 96.9 0.0054 1.2E-07 60.6 9.8 89 57-164 84-173 (244)
269 KOG2004 Mitochondrial ATP-depe 96.9 0.0089 1.9E-07 65.5 11.8 156 49-225 411-597 (906)
270 PF13207 AAA_17: AAA domain; P 96.9 0.0007 1.5E-08 59.5 3.1 23 73-95 1-23 (121)
271 PF08423 Rad51: Rad51; InterP 96.9 0.0045 9.8E-08 62.0 9.0 69 60-129 26-98 (256)
272 PRK00771 signal recognition pa 96.8 0.0081 1.8E-07 64.6 11.2 89 70-162 94-184 (437)
273 KOG0735 AAA+-type ATPase [Post 96.8 0.015 3.2E-07 63.7 12.9 152 71-251 701-871 (952)
274 PRK11034 clpA ATP-dependent Cl 96.8 0.0095 2.1E-07 68.8 12.3 48 48-95 457-512 (758)
275 COG1484 DnaC DNA replication p 96.8 0.0056 1.2E-07 61.2 9.1 91 53-163 87-177 (254)
276 KOG2739 Leucine-rich acidic nu 96.8 0.0007 1.5E-08 65.1 2.6 86 455-540 62-153 (260)
277 CHL00095 clpC Clp protease ATP 96.8 0.0063 1.4E-07 72.0 11.0 107 48-165 508-623 (821)
278 KOG0729 26S proteasome regulat 96.8 0.0084 1.8E-07 57.4 9.6 91 50-164 178-281 (435)
279 PRK08699 DNA polymerase III su 96.8 0.015 3.2E-07 60.4 12.4 65 156-223 116-184 (325)
280 PRK08939 primosomal protein Dn 96.8 0.0053 1.1E-07 63.1 9.0 90 53-163 135-227 (306)
281 KOG1947 Leucine rich repeat pr 96.8 0.00046 1E-08 77.4 1.2 116 454-578 184-309 (482)
282 cd03247 ABCC_cytochrome_bd The 96.8 0.0045 9.7E-08 58.6 7.7 127 70-208 27-169 (178)
283 cd01131 PilT Pilus retraction 96.8 0.0015 3.2E-08 62.9 4.5 107 72-196 2-111 (198)
284 PF00154 RecA: recA bacterial 96.7 0.015 3.2E-07 59.4 11.6 136 11-165 2-143 (322)
285 TIGR00708 cobA cob(I)alamin ad 96.7 0.0049 1.1E-07 56.7 7.4 117 71-195 5-141 (173)
286 COG1136 SalX ABC-type antimicr 96.7 0.0067 1.5E-07 58.3 8.6 133 70-209 30-216 (226)
287 PRK06696 uridine kinase; Valid 96.7 0.0021 4.6E-08 63.3 5.4 43 53-95 2-46 (223)
288 PLN03187 meiotic recombination 96.7 0.0099 2.1E-07 61.8 10.4 61 69-130 124-187 (344)
289 cd01120 RecA-like_NTPases RecA 96.7 0.0077 1.7E-07 56.0 9.0 39 73-114 1-39 (165)
290 PRK10867 signal recognition pa 96.7 0.009 1.9E-07 64.1 10.4 41 70-112 99-139 (433)
291 PTZ00494 tuzin-like protein; P 96.7 0.21 4.5E-06 52.4 19.2 167 46-225 368-545 (664)
292 PRK04328 hypothetical protein; 96.7 0.0056 1.2E-07 61.3 8.2 50 61-113 12-62 (249)
293 cd00544 CobU Adenosylcobinamid 96.7 0.0019 4.1E-08 59.9 4.5 80 74-162 2-82 (169)
294 KOG0726 26S proteasome regulat 96.7 0.015 3.2E-07 56.7 10.3 150 51-225 187-370 (440)
295 cd03238 ABC_UvrA The excision 96.7 0.0081 1.8E-07 56.2 8.6 125 70-208 20-161 (176)
296 PF01695 IstB_IS21: IstB-like 96.7 0.0025 5.5E-08 59.9 5.0 72 71-163 47-118 (178)
297 PRK05986 cob(I)alamin adenolsy 96.7 0.0072 1.6E-07 56.5 7.8 120 70-195 21-159 (191)
298 cd03214 ABC_Iron-Siderophores_ 96.6 0.0074 1.6E-07 57.2 8.2 124 70-198 24-162 (180)
299 TIGR03499 FlhF flagellar biosy 96.6 0.0077 1.7E-07 61.4 8.8 88 70-162 193-281 (282)
300 TIGR00064 ftsY signal recognit 96.6 0.009 2E-07 60.4 9.1 91 70-163 71-164 (272)
301 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0067 1.5E-07 60.4 8.0 92 70-164 68-174 (274)
302 PRK11889 flhF flagellar biosyn 96.6 0.015 3.3E-07 60.4 10.7 89 70-163 240-330 (436)
303 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.012 2.5E-07 58.4 9.9 42 69-113 18-59 (229)
304 TIGR02858 spore_III_AA stage I 96.6 0.013 2.7E-07 59.0 10.0 128 58-196 98-231 (270)
305 PRK06921 hypothetical protein; 96.6 0.0089 1.9E-07 60.2 9.0 39 70-110 116-154 (266)
306 PRK11823 DNA repair protein Ra 96.6 0.0074 1.6E-07 65.7 8.9 95 59-162 67-165 (446)
307 PRK12723 flagellar biosynthesi 96.6 0.015 3.3E-07 61.5 10.9 90 70-163 173-264 (388)
308 KOG2123 Uncharacterized conser 96.6 0.00015 3.2E-09 69.7 -3.7 98 411-511 18-123 (388)
309 COG0464 SpoVK ATPases of the A 96.6 0.0095 2.1E-07 66.6 10.0 173 49-248 242-445 (494)
310 COG1126 GlnQ ABC-type polar am 96.6 0.0075 1.6E-07 56.5 7.4 125 70-200 27-202 (240)
311 KOG1970 Checkpoint RAD17-RFC c 96.6 0.02 4.3E-07 61.1 11.4 53 51-108 84-142 (634)
312 cd03115 SRP The signal recogni 96.6 0.006 1.3E-07 57.5 7.1 89 73-164 2-93 (173)
313 cd03223 ABCD_peroxisomal_ALDP 96.6 0.0078 1.7E-07 56.1 7.7 127 70-208 26-160 (166)
314 KOG2739 Leucine-rich acidic nu 96.6 0.0016 3.5E-08 62.7 3.0 112 409-523 40-160 (260)
315 PLN00020 ribulose bisphosphate 96.6 0.0053 1.1E-07 62.9 6.8 152 69-251 146-333 (413)
316 COG1066 Sms Predicted ATP-depe 96.6 0.0088 1.9E-07 61.5 8.4 84 71-164 93-179 (456)
317 KOG2170 ATPase of the AAA+ sup 96.6 0.025 5.3E-07 55.8 11.0 49 48-96 81-135 (344)
318 TIGR02239 recomb_RAD51 DNA rep 96.6 0.016 3.5E-07 60.0 10.5 68 61-129 85-156 (316)
319 cd03246 ABCC_Protease_Secretio 96.5 0.006 1.3E-07 57.4 6.8 127 70-208 27-168 (173)
320 COG5238 RNA1 Ran GTPase-activa 96.5 0.0049 1.1E-07 59.4 6.0 164 410-579 28-229 (388)
321 cd03228 ABCC_MRP_Like The MRP 96.5 0.0061 1.3E-07 57.2 6.8 128 70-208 27-167 (171)
322 PRK05541 adenylylsulfate kinas 96.5 0.0054 1.2E-07 58.0 6.5 37 70-109 6-42 (176)
323 PRK13531 regulatory ATPase Rav 96.5 0.0034 7.4E-08 67.2 5.5 45 48-95 19-63 (498)
324 PRK04301 radA DNA repair and r 96.5 0.02 4.3E-07 59.8 11.1 68 61-129 91-162 (317)
325 PRK10463 hydrogenase nickel in 96.5 0.01 2.2E-07 59.6 8.4 26 70-95 103-128 (290)
326 PRK14974 cell division protein 96.5 0.018 3.8E-07 59.7 10.5 92 70-164 139-233 (336)
327 COG1419 FlhF Flagellar GTP-bin 96.5 0.021 4.5E-07 59.4 10.6 88 70-162 202-290 (407)
328 PRK14722 flhF flagellar biosyn 96.5 0.009 2E-07 62.6 8.2 89 70-163 136-225 (374)
329 PRK08233 hypothetical protein; 96.5 0.01 2.3E-07 56.4 8.1 25 71-95 3-27 (182)
330 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0053 1.2E-07 57.5 5.8 111 70-199 24-137 (177)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0069 1.5E-07 54.9 6.4 105 70-199 25-132 (144)
332 TIGR02236 recomb_radA DNA repa 96.5 0.021 4.6E-07 59.4 11.0 68 61-129 84-155 (310)
333 PF07724 AAA_2: AAA domain (Cd 96.5 0.0023 5E-08 59.6 3.3 43 70-115 2-45 (171)
334 PRK06835 DNA replication prote 96.4 0.017 3.7E-07 59.9 9.7 37 71-110 183-219 (329)
335 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.022 4.8E-07 55.7 9.8 128 70-199 29-204 (254)
336 TIGR00416 sms DNA repair prote 96.4 0.011 2.4E-07 64.4 8.6 53 58-113 80-133 (454)
337 cd03216 ABC_Carb_Monos_I This 96.4 0.0042 9.1E-08 57.7 4.7 117 70-198 25-146 (163)
338 TIGR00959 ffh signal recogniti 96.4 0.013 2.8E-07 62.9 8.8 91 70-162 98-191 (428)
339 PTZ00035 Rad51 protein; Provis 96.4 0.031 6.6E-07 58.4 11.5 69 60-129 106-178 (337)
340 COG0396 sufC Cysteine desulfur 96.4 0.0037 8E-08 59.1 4.1 65 141-207 150-217 (251)
341 PRK09519 recA DNA recombinatio 96.4 0.031 6.8E-07 63.9 12.2 134 10-163 9-148 (790)
342 PRK05973 replicative DNA helic 96.4 0.016 3.6E-07 56.6 8.8 49 70-123 63-111 (237)
343 PRK13539 cytochrome c biogenes 96.4 0.0077 1.7E-07 58.6 6.6 26 70-95 27-52 (207)
344 PRK12726 flagellar biosynthesi 96.4 0.015 3.3E-07 60.2 8.8 89 70-163 205-295 (407)
345 PLN03186 DNA repair protein RA 96.3 0.026 5.7E-07 58.7 10.6 69 61-130 112-184 (342)
346 CHL00206 ycf2 Ycf2; Provisiona 96.3 0.053 1.1E-06 66.8 14.3 26 70-95 1629-1654(2281)
347 PF06745 KaiC: KaiC; InterPro 96.3 0.0024 5.2E-08 63.2 2.9 97 61-163 8-125 (226)
348 KOG0737 AAA+-type ATPase [Post 96.3 0.024 5.2E-07 57.6 9.6 171 49-250 92-296 (386)
349 PF13481 AAA_25: AAA domain; P 96.3 0.013 2.9E-07 56.3 7.9 44 71-114 32-82 (193)
350 PF01583 APS_kinase: Adenylyls 96.3 0.004 8.7E-08 56.3 3.9 37 71-110 2-38 (156)
351 COG1102 Cmk Cytidylate kinase 96.3 0.0066 1.4E-07 53.9 4.9 45 73-131 2-46 (179)
352 PRK10416 signal recognition pa 96.3 0.036 7.8E-07 57.3 11.3 91 70-163 113-206 (318)
353 COG0465 HflB ATP-dependent Zn 96.3 0.036 7.8E-07 61.1 11.6 176 48-250 149-355 (596)
354 COG1116 TauB ABC-type nitrate/ 96.3 0.011 2.4E-07 57.0 6.8 26 70-95 28-53 (248)
355 COG3910 Predicted ATPase [Gene 96.2 0.034 7.3E-07 50.8 9.2 26 70-95 36-61 (233)
356 PRK05703 flhF flagellar biosyn 96.2 0.031 6.6E-07 60.4 10.8 87 71-162 221-308 (424)
357 COG0468 RecA RecA/RadA recombi 96.2 0.032 7E-07 55.9 10.0 90 69-162 58-150 (279)
358 PRK07667 uridine kinase; Provi 96.2 0.0094 2E-07 57.1 6.1 38 58-95 3-41 (193)
359 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0073 1.6E-07 56.8 5.3 120 70-198 25-159 (173)
360 TIGR02655 circ_KaiC circadian 96.2 0.02 4.3E-07 63.4 9.5 99 58-162 249-362 (484)
361 TIGR03878 thermo_KaiC_2 KaiC d 96.2 0.017 3.7E-07 58.2 8.2 42 69-113 34-75 (259)
362 PRK08533 flagellar accessory p 96.2 0.024 5.1E-07 56.0 9.0 53 70-128 23-75 (230)
363 PRK15455 PrkA family serine pr 96.2 0.006 1.3E-07 66.3 5.0 46 50-95 77-127 (644)
364 cd01124 KaiC KaiC is a circadi 96.2 0.012 2.6E-07 56.2 6.8 45 73-122 1-45 (187)
365 PRK12727 flagellar biosynthesi 96.2 0.029 6.3E-07 60.9 10.1 89 70-163 349-438 (559)
366 COG0572 Udk Uridine kinase [Nu 96.2 0.015 3.2E-07 55.4 7.0 79 70-154 7-85 (218)
367 PF00485 PRK: Phosphoribulokin 96.2 0.031 6.6E-07 53.7 9.5 81 73-155 1-85 (194)
368 PF12775 AAA_7: P-loop contain 96.2 0.012 2.5E-07 59.6 6.7 88 59-163 23-110 (272)
369 PF13306 LRR_5: Leucine rich r 96.1 0.018 3.9E-07 51.0 7.3 35 431-466 32-66 (129)
370 cd03229 ABC_Class3 This class 96.1 0.0069 1.5E-07 57.3 4.7 125 70-199 25-166 (178)
371 PRK06547 hypothetical protein; 96.1 0.0081 1.7E-07 56.1 5.0 32 63-95 8-39 (172)
372 PRK05342 clpX ATP-dependent pr 96.1 0.025 5.4E-07 60.6 9.1 48 48-95 70-132 (412)
373 COG1120 FepC ABC-type cobalami 96.1 0.026 5.6E-07 55.6 8.4 130 70-200 27-205 (258)
374 PF06309 Torsin: Torsin; Inte 96.1 0.022 4.8E-07 49.0 6.9 50 48-97 24-79 (127)
375 TIGR01425 SRP54_euk signal rec 96.1 0.019 4E-07 61.3 8.0 39 70-111 99-137 (429)
376 PRK05917 DNA polymerase III su 96.0 0.16 3.4E-06 51.3 14.0 39 57-95 5-43 (290)
377 COG4618 ArpD ABC-type protease 96.0 0.027 5.9E-07 59.6 8.8 25 71-95 362-386 (580)
378 TIGR00150 HI0065_YjeE ATPase, 96.0 0.011 2.5E-07 51.9 5.1 39 57-95 7-46 (133)
379 COG0563 Adk Adenylate kinase a 96.0 0.011 2.3E-07 55.5 5.2 23 73-95 2-24 (178)
380 PRK13765 ATP-dependent proteas 96.0 0.012 2.7E-07 66.3 6.5 75 48-128 30-104 (637)
381 COG3598 RepA RecA-family ATPas 95.9 0.027 5.8E-07 55.9 7.7 62 72-133 90-159 (402)
382 PRK13695 putative NTPase; Prov 95.9 0.014 3.1E-07 54.9 5.9 23 73-95 2-24 (174)
383 cd01129 PulE-GspE PulE/GspE Th 95.9 0.014 3E-07 58.8 6.0 99 57-170 68-166 (264)
384 cd03215 ABC_Carb_Monos_II This 95.9 0.016 3.5E-07 55.0 6.2 26 70-95 25-50 (182)
385 cd02019 NK Nucleoside/nucleoti 95.9 0.0062 1.3E-07 47.0 2.7 23 73-95 1-23 (69)
386 PF13238 AAA_18: AAA domain; P 95.9 0.0062 1.3E-07 54.1 3.0 22 74-95 1-22 (129)
387 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.015 3.3E-07 53.6 5.7 119 70-199 24-145 (157)
388 KOG0730 AAA+-type ATPase [Post 95.9 0.029 6.3E-07 61.3 8.4 216 69-319 216-455 (693)
389 TIGR01817 nifA Nif-specific re 95.9 0.063 1.4E-06 60.6 11.7 64 47-113 194-258 (534)
390 PRK05201 hslU ATP-dependent pr 95.8 0.021 4.6E-07 60.0 7.0 48 48-95 14-74 (443)
391 cd01125 repA Hexameric Replica 95.8 0.042 9.1E-07 54.8 9.0 147 72-219 2-199 (239)
392 cd03369 ABCC_NFT1 Domain 2 of 95.8 0.056 1.2E-06 52.6 9.7 26 70-95 33-58 (207)
393 TIGR00390 hslU ATP-dependent p 95.8 0.022 4.7E-07 59.9 7.0 48 48-95 11-71 (441)
394 TIGR00382 clpX endopeptidase C 95.8 0.048 1E-06 58.1 9.8 48 48-95 76-140 (413)
395 PRK09270 nucleoside triphospha 95.8 0.015 3.2E-07 57.6 5.6 28 68-95 30-57 (229)
396 PRK14723 flhF flagellar biosyn 95.8 0.051 1.1E-06 62.0 10.4 88 71-163 185-273 (767)
397 PRK13543 cytochrome c biogenes 95.8 0.045 9.8E-07 53.5 8.9 26 70-95 36-61 (214)
398 PRK12724 flagellar biosynthesi 95.8 0.03 6.4E-07 59.2 7.9 85 71-162 223-308 (432)
399 PRK06002 fliI flagellum-specif 95.8 0.041 8.8E-07 58.9 9.0 91 70-164 164-265 (450)
400 PF00910 RNA_helicase: RNA hel 95.8 0.006 1.3E-07 52.0 2.3 22 74-95 1-22 (107)
401 COG1618 Predicted nucleotide k 95.8 0.011 2.3E-07 52.6 3.9 26 71-96 5-30 (179)
402 cd03244 ABCC_MRP_domain2 Domai 95.8 0.035 7.7E-07 54.6 8.1 26 70-95 29-54 (221)
403 KOG0738 AAA+-type ATPase [Post 95.8 0.045 9.7E-07 55.8 8.6 69 72-164 246-315 (491)
404 COG2274 SunT ABC-type bacterio 95.7 0.019 4.1E-07 65.7 6.8 26 70-95 498-523 (709)
405 TIGR00764 lon_rel lon-related 95.7 0.03 6.5E-07 63.5 8.3 75 48-128 17-91 (608)
406 PRK05480 uridine/cytidine kina 95.7 0.0095 2.1E-07 58.1 3.7 26 70-95 5-30 (209)
407 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.011 2.3E-07 57.6 4.0 23 71-93 29-51 (213)
408 PF00006 ATP-synt_ab: ATP synt 95.7 0.032 7E-07 53.9 7.3 98 61-163 5-115 (215)
409 PF13671 AAA_33: AAA domain; P 95.7 0.0089 1.9E-07 54.2 3.3 23 73-95 1-23 (143)
410 PRK14721 flhF flagellar biosyn 95.7 0.052 1.1E-06 57.9 9.3 88 70-162 190-278 (420)
411 PF03308 ArgK: ArgK protein; 95.6 0.021 4.5E-07 55.6 5.7 58 57-115 14-72 (266)
412 cd01122 GP4d_helicase GP4d_hel 95.6 0.074 1.6E-06 54.3 10.2 53 70-126 29-81 (271)
413 PRK06762 hypothetical protein; 95.6 0.01 2.3E-07 55.4 3.4 25 71-95 2-26 (166)
414 PF00560 LRR_1: Leucine Rich R 95.6 0.0057 1.2E-07 34.9 1.0 17 484-500 2-18 (22)
415 cd03250 ABCC_MRP_domain1 Domai 95.6 0.042 9.2E-07 53.3 7.8 26 70-95 30-55 (204)
416 cd03213 ABCG_EPDR ABCG transpo 95.6 0.038 8.2E-07 53.1 7.3 26 70-95 34-59 (194)
417 PRK12678 transcription termina 95.6 0.021 4.5E-07 62.0 5.8 103 60-164 405-514 (672)
418 COG4088 Predicted nucleotide k 95.6 0.0092 2E-07 55.2 2.7 24 72-95 2-25 (261)
419 cd03217 ABC_FeS_Assembly ABC-t 95.6 0.037 8.1E-07 53.4 7.2 25 70-94 25-49 (200)
420 PF08433 KTI12: Chromatin asso 95.5 0.02 4.3E-07 57.6 5.4 25 72-96 2-26 (270)
421 PRK08972 fliI flagellum-specif 95.5 0.048 1E-06 58.1 8.5 90 70-164 161-263 (444)
422 TIGR00235 udk uridine kinase. 95.5 0.011 2.4E-07 57.5 3.5 26 70-95 5-30 (207)
423 PF02374 ArsA_ATPase: Anion-tr 95.5 0.013 2.8E-07 60.4 4.1 47 72-121 2-48 (305)
424 cd01135 V_A-ATPase_B V/A-type 95.5 0.052 1.1E-06 54.0 8.2 96 70-165 68-178 (276)
425 PF07726 AAA_3: ATPase family 95.5 0.0078 1.7E-07 51.9 2.1 29 73-104 1-29 (131)
426 PF13306 LRR_5: Leucine rich r 95.5 0.033 7.1E-07 49.4 6.3 103 430-539 8-112 (129)
427 cd01136 ATPase_flagellum-secre 95.5 0.079 1.7E-06 54.5 9.7 90 70-164 68-170 (326)
428 COG0467 RAD55 RecA-superfamily 95.5 0.035 7.6E-07 56.2 7.2 54 69-128 21-74 (260)
429 COG1131 CcmA ABC-type multidru 95.5 0.14 3.1E-06 52.5 11.6 27 70-96 30-56 (293)
430 PF00625 Guanylate_kin: Guanyl 95.5 0.018 4E-07 54.7 4.8 37 71-110 2-38 (183)
431 COG0003 ArsA Predicted ATPase 95.5 0.02 4.3E-07 58.8 5.2 49 71-122 2-50 (322)
432 PRK08927 fliI flagellum-specif 95.5 0.072 1.6E-06 57.0 9.6 90 70-164 157-259 (442)
433 PTZ00301 uridine kinase; Provi 95.5 0.012 2.6E-07 56.9 3.4 25 71-95 3-27 (210)
434 TIGR03575 selen_PSTK_euk L-ser 95.5 0.038 8.2E-07 57.3 7.3 22 74-95 2-23 (340)
435 PTZ00088 adenylate kinase 1; P 95.5 0.015 3.3E-07 56.9 4.2 23 73-95 8-30 (229)
436 COG5635 Predicted NTPase (NACH 95.5 0.03 6.5E-07 66.4 7.4 198 71-278 222-449 (824)
437 COG3640 CooC CO dehydrogenase 95.4 0.022 4.8E-07 54.1 4.8 50 73-131 2-51 (255)
438 PRK10875 recD exonuclease V su 95.4 0.042 9.2E-07 62.0 8.0 55 71-125 167-221 (615)
439 PRK07276 DNA polymerase III su 95.4 0.49 1.1E-05 48.0 14.8 149 56-222 9-173 (290)
440 KOG1051 Chaperone HSP104 and r 95.4 0.09 2E-06 60.7 10.5 104 48-165 561-672 (898)
441 TIGR00554 panK_bact pantothena 95.4 0.094 2E-06 53.2 9.7 26 70-95 61-86 (290)
442 TIGR01069 mutS2 MutS2 family p 95.4 0.065 1.4E-06 62.5 9.7 25 70-94 321-345 (771)
443 TIGR03498 FliI_clade3 flagella 95.4 0.059 1.3E-06 57.6 8.6 91 70-164 139-241 (418)
444 COG1428 Deoxynucleoside kinase 95.4 0.031 6.8E-07 52.4 5.6 49 71-125 4-52 (216)
445 PRK09099 type III secretion sy 95.3 0.078 1.7E-06 57.0 9.3 91 70-164 162-264 (441)
446 cd02027 APSK Adenosine 5'-phos 95.3 0.046 1E-06 49.8 6.6 23 73-95 1-23 (149)
447 PF13245 AAA_19: Part of AAA d 95.3 0.028 6.1E-07 44.1 4.4 40 71-110 10-50 (76)
448 COG0529 CysC Adenylylsulfate k 95.3 0.032 6.9E-07 50.5 5.2 26 70-95 22-47 (197)
449 PLN02165 adenylate isopentenyl 95.3 0.019 4.1E-07 58.8 4.3 26 70-95 42-67 (334)
450 PRK15453 phosphoribulokinase; 95.3 0.08 1.7E-06 52.7 8.5 26 70-95 4-29 (290)
451 PRK05922 type III secretion sy 95.3 0.094 2E-06 56.1 9.7 91 70-164 156-258 (434)
452 PRK00889 adenylylsulfate kinas 95.3 0.02 4.4E-07 53.9 4.3 26 70-95 3-28 (175)
453 COG0488 Uup ATPase components 95.3 0.039 8.5E-07 61.0 7.0 135 70-210 347-511 (530)
454 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.2E-07 55.7 3.4 26 70-95 2-27 (188)
455 PRK06217 hypothetical protein; 95.3 0.033 7.2E-07 52.9 5.8 24 72-95 2-25 (183)
456 TIGR03522 GldA_ABC_ATP gliding 95.3 0.076 1.6E-06 55.0 8.8 26 70-95 27-52 (301)
457 PRK00131 aroK shikimate kinase 95.3 0.016 3.4E-07 54.7 3.5 26 70-95 3-28 (175)
458 PF03193 DUF258: Protein of un 95.3 0.028 6.2E-07 51.1 4.9 35 57-95 25-59 (161)
459 TIGR03574 selen_PSTK L-seryl-t 95.3 0.023 5.1E-07 57.0 4.9 23 73-95 1-23 (249)
460 COG1117 PstB ABC-type phosphat 95.2 0.062 1.3E-06 50.4 7.0 42 49-93 14-55 (253)
461 PRK08149 ATP synthase SpaL; Va 95.2 0.092 2E-06 56.1 9.4 90 70-164 150-252 (428)
462 PRK05800 cobU adenosylcobinami 95.2 0.064 1.4E-06 49.9 7.3 84 72-163 2-86 (170)
463 PRK03839 putative kinase; Prov 95.2 0.015 3.2E-07 55.2 3.2 23 73-95 2-24 (180)
464 TIGR01420 pilT_fam pilus retra 95.2 0.025 5.4E-07 59.6 5.1 108 71-193 122-229 (343)
465 COG1124 DppF ABC-type dipeptid 95.2 0.027 5.9E-07 54.0 4.8 26 70-95 32-57 (252)
466 cd02025 PanK Pantothenate kina 95.2 0.076 1.7E-06 51.9 8.1 23 73-95 1-23 (220)
467 COG1703 ArgK Putative periplas 95.2 0.036 7.9E-07 54.8 5.7 58 58-116 37-95 (323)
468 PF00158 Sigma54_activat: Sigm 95.2 0.029 6.3E-07 52.1 4.9 45 51-95 1-46 (168)
469 PRK09302 circadian clock prote 95.2 0.083 1.8E-06 59.2 9.5 100 58-163 259-373 (509)
470 PRK04040 adenylate kinase; Pro 95.2 0.017 3.6E-07 54.9 3.4 25 71-95 2-26 (188)
471 PRK06995 flhF flagellar biosyn 95.2 0.069 1.5E-06 58.0 8.4 60 70-130 255-315 (484)
472 COG4778 PhnL ABC-type phosphon 95.2 0.029 6.2E-07 50.3 4.4 36 70-109 36-71 (235)
473 COG0714 MoxR-like ATPases [Gen 95.1 0.032 6.9E-07 58.6 5.7 63 48-119 23-85 (329)
474 KOG0927 Predicted transporter 95.1 0.054 1.2E-06 57.8 7.1 57 142-202 228-287 (614)
475 COG3854 SpoIIIAA ncharacterize 95.1 0.076 1.6E-06 50.2 7.2 123 61-196 128-255 (308)
476 PRK03846 adenylylsulfate kinas 95.1 0.026 5.7E-07 54.4 4.6 26 70-95 23-48 (198)
477 PRK06793 fliI flagellum-specif 95.1 0.097 2.1E-06 56.0 9.1 92 70-165 155-258 (432)
478 PF08298 AAA_PrkA: PrkA AAA do 95.1 0.034 7.5E-07 56.9 5.3 48 48-95 60-112 (358)
479 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.081 1.8E-06 51.0 7.7 118 70-201 28-158 (204)
480 PRK13537 nodulation ABC transp 95.0 0.22 4.7E-06 51.6 11.4 26 70-95 32-57 (306)
481 COG3840 ThiQ ABC-type thiamine 95.0 0.2 4.2E-06 45.9 9.2 36 70-109 24-59 (231)
482 cd01132 F1_ATPase_alpha F1 ATP 95.0 0.11 2.4E-06 51.8 8.6 91 70-165 68-173 (274)
483 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.016 3.5E-07 55.1 2.7 23 73-95 1-23 (183)
484 TIGR02322 phosphon_PhnN phosph 95.0 0.02 4.4E-07 54.2 3.3 24 72-95 2-25 (179)
485 cd00227 CPT Chloramphenicol (C 95.0 0.021 4.6E-07 53.8 3.4 24 72-95 3-26 (175)
486 cd03287 ABC_MSH3_euk MutS3 hom 95.0 0.066 1.4E-06 52.2 6.9 24 70-93 30-53 (222)
487 cd00071 GMPK Guanosine monopho 95.0 0.024 5.1E-07 50.8 3.5 22 74-95 2-23 (137)
488 PRK00625 shikimate kinase; Pro 95.0 0.019 4.2E-07 53.6 3.0 23 73-95 2-24 (173)
489 PF03969 AFG1_ATPase: AFG1-lik 94.9 0.031 6.6E-07 58.8 4.8 74 70-163 61-137 (362)
490 PF03205 MobB: Molybdopterin g 94.9 0.03 6.6E-07 50.2 4.1 39 72-112 1-39 (140)
491 COG2401 ABC-type ATPase fused 94.9 0.014 2.9E-07 60.0 2.1 151 51-206 373-580 (593)
492 PRK15064 ABC transporter ATP-b 94.9 0.1 2.2E-06 59.0 9.5 26 70-95 26-51 (530)
493 PRK13768 GTPase; Provisional 94.9 0.03 6.6E-07 56.1 4.6 38 71-111 2-39 (253)
494 PRK13657 cyclic beta-1,2-gluca 94.9 0.1 2.2E-06 59.9 9.6 27 70-96 360-386 (588)
495 PRK15429 formate hydrogenlyase 94.9 0.047 1E-06 63.6 6.8 62 49-113 376-438 (686)
496 PRK07721 fliI flagellum-specif 94.9 0.12 2.6E-06 55.8 9.3 90 70-163 157-258 (438)
497 PRK09302 circadian clock prote 94.9 0.075 1.6E-06 59.6 8.1 100 60-164 19-141 (509)
498 PRK14737 gmk guanylate kinase; 94.9 0.025 5.5E-07 53.6 3.7 26 70-95 3-28 (186)
499 PRK07594 type III secretion sy 94.9 0.1 2.2E-06 55.9 8.5 90 70-164 154-256 (433)
500 PRK05688 fliI flagellum-specif 94.9 0.13 2.7E-06 55.3 9.2 90 70-164 167-269 (451)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-81 Score=708.26 Aligned_cols=758 Identities=43% Similarity=0.733 Sum_probs=626.8
Q ss_pred CccccchHHHHHHHHHHHHHHHHhcCCcccccc-CCCCcccccccccCCCcc-cchHHHHHHHHHHhccCCCceEEEEEc
Q 038105 1 NCKSSYKFGRKVAKRLRDVKALKGEGVFEEVAA-PDPELISWADERHTEPTV-VGLQSQLEQVWRCLVQEPAAGIIGLYG 78 (791)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-vGR~~~~~~l~~~L~~~~~~~vv~i~G 78 (791)
|+..-|.+++++.+.+++|+....++.|+.++. ..|. .....+|..+.- ||.+..++++.+.|..+ +..+|+|+|
T Consensus 110 ~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~--~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d-~~~iv~i~G 186 (889)
T KOG4658|consen 110 NVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR--EKVETRPIQSESDVGLETMLEKLWNRLMED-DVGIVGIYG 186 (889)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhccccceecccccccch--hhcccCCCCccccccHHHHHHHHHHHhccC-CCCEEEEEC
Confidence 345668899999999999999998887877775 3333 333334443333 99999999999999987 449999999
Q ss_pred CCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEE
Q 038105 79 MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALL 158 (791)
Q Consensus 79 ~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlV 158 (791)
|||+||||||++++++....+.+|+.++||.+++.++...++.+|++.++.....+......+.+..+.+.|..+|++||
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 99999999999999998557899999999999999999999999999999876666666668999999999999999999
Q ss_pred EcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHH
Q 038105 159 LDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPE 237 (791)
Q Consensus 159 lDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~ 237 (791)
+||||+..+|+.++.++|. ..+|++|++|||+.+++.. ++....++++.|+++|||++|.+.++.......+.+++
T Consensus 267 LDDIW~~~dw~~I~~~~p~---~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~ 343 (889)
T KOG4658|consen 267 LDDIWEEVDWDKIGVPFPS---RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEE 343 (889)
T ss_pred EecccccccHHhcCCCCCC---ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHH
Confidence 9999999999999999999 7788999999999999988 77788999999999999999999999886566666899
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHHHHHHhhh-ccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccC
Q 038105 238 LAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYAIEVLRRS-ASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLY 316 (791)
Q Consensus 238 ~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f 316 (791)
.|++++++|+|+|+|+.++|+.++.+.+..+|+.+.+.+.+. ..+.+++.+.++.++.+|||.||+ ++|.||+|||.|
T Consensus 344 lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~lK~CFLycalF 422 (889)
T KOG4658|consen 344 LAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-ELKSCFLYCALF 422 (889)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-HHHHHHHhhccC
Confidence 999999999999999999999999999999999999999887 666777788999999999999996 999999999999
Q ss_pred CCCcccChHhHHHHHHHcCcccccc--cchhhhhHHHHHHHHHhccccccc----CCcEEechHHHHHHHHHHhhhhccc
Q 038105 317 PEDYSIYKRDLIDCWICEGFLDEAK--FGTQNQGYHIVTTLVRACLLEEVE----DDQVKMHDVIRDMALWITCEIEKEK 390 (791)
Q Consensus 317 ~~~~~~~~~~l~~~w~~~g~~~~~~--~~~~~~~~~~l~~L~~~~ll~~~~----~~~~~~h~li~~~~~~~~~~~~~~~ 390 (791)
|+++.|.+..++.+|+||||++... ...++++.+++.+|+.++++.... ...|+|||++|++|.|++.+.+.+.
T Consensus 423 PED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~ 502 (889)
T KOG4658|consen 423 PEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE 502 (889)
T ss_pred CcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc
Confidence 9999999999999999999998844 678899999999999999998864 3789999999999999999877777
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCC--CcccchhhhccCCcccEEeecCc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNE--LTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
++.+...+.+....| ...++..+|++.+.++.+..++.-..+++|++|-+.+|. +..++..||..++.|++||+++|
T Consensus 503 e~~iv~~~~~~~~~~-~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 503 ENQIVSDGVGLSEIP-QVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred cceEEECCcCccccc-cccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC
Confidence 777766665666663 445568999999999999998888888899999999996 77888888999999999999999
Q ss_pred cccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
..+.++|+.++.|.+|++|+++++.++.+|.+++++.+|.+|++..+.....+| .+...+++|++|.+.......
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~---- 656 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSN---- 656 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeecccccc----
Confidence 999999999999999999999999999999999999999999999987655554 446779999999998765222
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
......++.++.+|+.+.++......+..+.....+..+.+.+.+..+ ........+..+.+|+.|.+.+|.+.
T Consensus 657 ----~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~--~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 657 ----DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC--SKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred ----chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc--ccceeecccccccCcceEEEEcCCCc
Confidence 234667788888999888876655333444444455555555555332 22233356788999999999999887
Q ss_pred CceeecccccccccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcC
Q 038105 629 GGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPF 708 (791)
Q Consensus 629 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~ 708 (791)
.... .+.. ...... .++++.++...+|..++.+.+....|+|+.|.+..|..+++......... . .......|
T Consensus 731 e~~~-~~~~--~~~~~~-~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~--~-l~~~i~~f 803 (889)
T KOG4658|consen 731 EIVI-EWEE--SLIVLL-CFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL--E-LKELILPF 803 (889)
T ss_pred hhhc-cccc--ccchhh-hHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh--h-cccEEecc
Confidence 5321 1111 001110 36678888888999999999999999999999999987776533211000 0 01123467
Q ss_pred ccccee-cccccccccccccCCCCCCCccEEEEcCCCCCCCCCCCCCC-CCC--ccEEEEcchhhhhccccCcccccccc
Q 038105 709 AKLQHL-ELWGLKSLKSIYWKPLPLPRLKELEVEDCHSLKKLPLDSNS-AKG--RRILIRGDEDWWRRLQWEDEATQNAF 784 (791)
Q Consensus 709 ~~L~~L-~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~-~~~--~~~~i~~~~~~~~~l~~~~~~~~~~~ 784 (791)
+++..+ .+.+.+.+..+.+.+..+++|+.+.+..||+|.++|...-. +.. ..+......+|++.++|+++++...+
T Consensus 804 ~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 804 NKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred cccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 888888 58888889999888888999999999999999999987543 222 23333455568999999999887765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.7e-59 Score=559.27 Aligned_cols=642 Identities=19% Similarity=0.264 Sum_probs=448.8
Q ss_pred CCCcccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC---Ccc--------
Q 038105 47 TEPTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS---KDL-------- 114 (791)
Q Consensus 47 ~~~~~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~---~~~-------- 114 (791)
..+.+|||++.++++.+++.. .++.++|+|+||||+||||||+++|++. ...|++.+|++.. ...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccc
Confidence 356799999999999999864 3468999999999999999999999987 6788888887521 100
Q ss_pred ----CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEE
Q 038105 115 ----QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFT 190 (791)
Q Consensus 115 ----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivT 190 (791)
....++.+++.++..... ..... ...++++++++|+||||||||+..+++.+..... |.++|++||||
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~---~~~~GsrIIiT 330 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ---WFGSGSRIIVI 330 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc---cCCCCcEEEEE
Confidence 012334444444321110 01111 2456778899999999999999888888765433 36789999999
Q ss_pred cCcHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHH
Q 038105 191 TRFVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWR 270 (791)
Q Consensus 191 tR~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~ 270 (791)
||+..++......++|+++.+++++|+++|.++|+... .+++.+.+++++|+++|+|+||||+++|++|+. ++..+|+
T Consensus 331 Trd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~ 408 (1153)
T PLN03210 331 TKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWM 408 (1153)
T ss_pred eCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHH
Confidence 99999987777778999999999999999999998765 345567889999999999999999999999987 5789999
Q ss_pred HHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCcccccccchhhhhHH
Q 038105 271 YAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQGYH 350 (791)
Q Consensus 271 ~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~ 350 (791)
.+++.++... +..+..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.++. ..
T Consensus 409 ~~l~~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------~~ 470 (1153)
T PLN03210 409 DMLPRLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------NI 470 (1153)
T ss_pred HHHHHHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc---------hh
Confidence 9999887632 3489999999999998745899999999999887654 3666777654322 22
Q ss_pred HHHHHHHhcccccccCCcEEechHHHHHHHHHHhhhh--cccccEEEEc---------C-------------CCc-----
Q 038105 351 IVTTLVRACLLEEVEDDQVKMHDVIRDMALWITCEIE--KEKEGFLVYA---------G-------------SGL----- 401 (791)
Q Consensus 351 ~l~~L~~~~ll~~~~~~~~~~h~li~~~~~~~~~~~~--~~~~~~~~~~---------~-------------~~~----- 401 (791)
.++.|++++|++.. ..++.|||++|+||++++.++. +.++.++... + ..+
T Consensus 471 ~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 471 GLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred ChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 38899999999875 4679999999999999987642 1111121100 0 000
Q ss_pred ----------------------------ccCCCCccCc-cceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchh
Q 038105 402 ----------------------------TEAPADVRGW-EMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDD 452 (791)
Q Consensus 402 ----------------------------~~~~~~~~~~-~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~ 452 (791)
..+|.++..+ .+++.|.+.++.+..+|....+.+|+.|++.+|.+..++..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc
Confidence 0112222222 24555555555555666544567777788877777666554
Q ss_pred hhccCCcccEEeecCccccccccccccCcccccEEecCCC-cccccchhhhcCCCCceeeccCcccccccchhHhhcCcC
Q 038105 453 FFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT-EVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSR 531 (791)
Q Consensus 453 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~ 531 (791)
+..+++|++|++++|..+..+| .++.+++|++|++++| .+..+|..++++++|+.|++++|...+.+|.. .++++
T Consensus 630 -~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~s 705 (1153)
T PLN03210 630 -VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKS 705 (1153)
T ss_pred -cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCC
Confidence 5677888888888776677777 4777788888888776 45577878888888888888887766777764 26788
Q ss_pred CCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCC------CCc
Q 038105 532 LRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDR------EES 605 (791)
Q Consensus 532 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~------~~~ 605 (791)
|++|++++|.... .+|. ...+|+.|++++|.+..++.... ...+..|.+..+.. ...
T Consensus 706 L~~L~Lsgc~~L~----------~~p~---~~~nL~~L~L~~n~i~~lP~~~~----l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 706 LYRLNLSGCSRLK----------SFPD---ISTNISWLDLDETAIEEFPSNLR----LENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCEEeCCCCCCcc----------cccc---ccCCcCeeecCCCcccccccccc----ccccccccccccchhhccccccc
Confidence 8888888775211 1221 13567777887777655443221 12233333332211 011
Q ss_pred ccccccccccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcch
Q 038105 606 IDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDM 685 (791)
Q Consensus 606 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L 685 (791)
........+++|++|++++|...+.+|..++. +++|+.|.+.+|.++..++....+++|+.|++++|..+
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~----------L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN----------LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRL 838 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhC----------CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcc
Confidence 11111223467888888888777766665543 56778888888877777776556777888888887666
Q ss_pred hHHh----------hcCCCCCCCCcccccCCcCcccceecccccccccccccCCCCCCCccEEEEcCCCCCCCCCCCCC
Q 038105 686 EEII----------SAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYWKPLPLPRLKELEVEDCHSLKKLPLDSN 754 (791)
Q Consensus 686 ~~l~----------~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n 754 (791)
+.++ ++.|. +..+. .....+++|+.|.+.+|++++.++.....+++|+.+++.+|++|+.+++.++
T Consensus 839 ~~~p~~~~nL~~L~Ls~n~--i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 839 RTFPDISTNISDLNLSRTG--IEEVP-WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred ccccccccccCEeECCCCC--CccCh-HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCC
Confidence 5432 22221 00111 1234678899999999999999888888899999999999999998877543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-41 Score=352.51 Aligned_cols=282 Identities=35% Similarity=0.633 Sum_probs=230.7
Q ss_pred hHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCC
Q 038105 54 LQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD 132 (791)
Q Consensus 54 R~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 132 (791)
||+++++|.+.|.. +++.++|+|+|+||+||||||++++++.. ....|+.++|++++...+...++.+|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR-IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH-HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc-ccccccccccccccccccccccccccccccccccc
Confidence 89999999999988 34789999999999999999999999842 47899999999999998889999999999988754
Q ss_pred Cc-ccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccc-cceEEecc
Q 038105 133 SW-KDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMED-RRMFKVAC 210 (791)
Q Consensus 133 ~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~-~~~~~l~~ 210 (791)
.. ...+..+....+.+.+.++++||||||||+...++.+...++. ...|++||||||+..++..... ...+++++
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~---~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPS---FSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HC---HHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccc---ccccccccccccccccccccccccccccccc
Confidence 43 5567888999999999999999999999999999888777766 6678999999999888766544 67899999
Q ss_pred CChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHHHHHHhhhccccCCCchhh
Q 038105 211 LSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYAIEVLRRSASEFEGLGKEV 290 (791)
Q Consensus 211 l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~~~~~~~~~~~~~l 290 (791)
|+++||++||.+.++.......+..++.+++|++.|+|+|+||.++|++++.+.+..+|+..++.+.....+..+....+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998866533445567889999999999999999999999765578999999988887765554556799
Q ss_pred hhhhhhcccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCccccc
Q 038105 291 YPLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEA 340 (791)
Q Consensus 291 ~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~ 340 (791)
+.++..||+.||+ +.|.||++|++||.++.++...++++|+++|++...
T Consensus 237 ~~~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 237 FSALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999999 999999999999999999999999999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1e-23 Score=255.72 Aligned_cols=174 Identities=22% Similarity=0.349 Sum_probs=106.0
Q ss_pred cEEEEcCCCcc-cCCCCcc-CccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLT-EAPADVR-GWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~-~~~~~~~-~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+..+++.+. .+|..+. .+++|++|++++|.+........+++|++|++++|.+....+..++.+++|++|++++|.
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 34455555443 4554443 566777777777766543333456667777777776655555556667777777777765
Q ss_pred ccccccccccCcccccEEecCCCccc-ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
....+|..++.+++|++|++++|.+. .+|..++++++|+.|++++|.+.+.+|.. ++++++|++|++++|.+++
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---- 250 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---- 250 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc----
Confidence 45566666667777777777776665 45666667777777777766665566655 5666777777776666443
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeech
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSF 576 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 576 (791)
.+|..++++++|+.|+++.|.+
T Consensus 251 ------~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 251 ------PIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred ------ccChhHhCCCCCCEEECcCCee
Confidence 2344455555555555555443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.1e-23 Score=255.42 Aligned_cols=138 Identities=22% Similarity=0.314 Sum_probs=72.0
Q ss_pred CCCCccCccceeEEEcccCCCCC-CC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCc
Q 038105 404 APADVRGWEMVRRLSLMRNSIDN-LP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKL 481 (791)
Q Consensus 404 ~~~~~~~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l 481 (791)
+|..+..+++|++|++++|.+.. +| .+.++++|++|++++|.+....+..+.++++|++|++++|.....+|..++.+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 44445555555555555555432 22 34455555555555555544444445555555555555554444455555555
Q ss_pred ccccEEecCCCccc-ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCc
Q 038105 482 VSLQLLDISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGI 542 (791)
Q Consensus 482 ~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 542 (791)
++|++|++++|.+. .+|..++++++|+.|++++|.+.+.+|.. +.++++|++|++++|.+
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSL 296 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCee
Confidence 55555555555554 44555555555555555555554444443 34555555555555543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=5.8e-22 Score=203.14 Aligned_cols=131 Identities=20% Similarity=0.392 Sum_probs=58.0
Q ss_pred CccceeEEEcccCCCCCCCCCCCC-CCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEE
Q 038105 410 GWEMVRRLSLMRNSIDNLPTVPTC-PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLL 487 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L 487 (791)
++.+|+.+++..|.+..+|.++.. .+|+.|++.+|.+..+..+.+..++.|+.|||+.| .+..+|. +|..-.++++|
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEE
Confidence 444444444444444444443322 22444444444444444444444444444444444 3333332 13333444444
Q ss_pred ecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCc
Q 038105 488 DISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGI 542 (791)
Q Consensus 488 ~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 542 (791)
+|++|+|+.+.. .|..+.+|..|.|+.|++ +.+|...|.++++|+.|++..|.|
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred eeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccce
Confidence 444444444322 244444444444444443 444444444444444444444443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6e-22 Score=203.03 Aligned_cols=311 Identities=20% Similarity=0.200 Sum_probs=217.5
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-+....+.+..+|.......++..|++.+|.|..+. .+..++-|++|+++.|.++.++...|..-.++++|+|++|..
T Consensus 106 ~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I 185 (873)
T KOG4194|consen 106 EVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI 185 (873)
T ss_pred eeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc
Confidence 455566778888877777788999999999988876 467888999999999999888877788888899999999944
Q ss_pred cccccccccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRF 549 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 549 (791)
.+---..|..+.+|.+|.|++|+++.+|.- |+++++|+.|+|..|.+ ..+....|.++++|+.|.+..|.++.+..
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~D-- 262 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDD-- 262 (873)
T ss_pred cccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccC--
Confidence 333344688888999999999999998764 77799999999998876 44433337889999999999998877544
Q ss_pred ccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 550 SSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 550 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
..|..|.++++|++..|++.... ..++.+++.|+.|+++.|.+..
T Consensus 263 --------G~Fy~l~kme~l~L~~N~l~~vn---------------------------~g~lfgLt~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 263 --------GAFYGLEKMEHLNLETNRLQAVN---------------------------EGWLFGLTSLEQLDLSYNAIQR 307 (873)
T ss_pred --------cceeeecccceeecccchhhhhh---------------------------cccccccchhhhhccchhhhhe
Confidence 35677888999999988886543 2456678888888888888777
Q ss_pred ceeecccccccccccccccCCCCEEEEecCCCcccccchhcCCC----CceEEEccCcchhHHhhcCCCCCC-CCccccc
Q 038105 630 GLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPN----LKSISVTHCDDMEEIISAGEFDDI-PEMTGII 704 (791)
Q Consensus 630 ~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~n----L~~L~l~~c~~L~~l~~~~~~~~~-~~l~~~~ 704 (791)
.-+..|....+|..++++.|++++|+-..+..|..|..|....| |.+--+.+..+|+.|++..|...- .+-....
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 65677777667777777777777776666655555554433222 222233334455555555441100 0001122
Q ss_pred CCcCcccceecccccccccccccC-CCCCCCccEEEEcC
Q 038105 705 SSPFAKLQHLELWGLKSLKSIYWK-PLPLPRLKELEVED 742 (791)
Q Consensus 705 ~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~ 742 (791)
..++++|+.|.+.+ .+++.++.. ...++.|++|++.+
T Consensus 388 f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred hccchhhhheeecC-ceeeecchhhhccCcccceecCCC
Confidence 34578888888877 456666642 23456666665554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=2e-21 Score=200.34 Aligned_cols=238 Identities=18% Similarity=0.295 Sum_probs=107.2
Q ss_pred cCCCCccCccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccc-ccccccccC
Q 038105 403 EAPADVRGWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRML-QQLPMGISK 480 (791)
Q Consensus 403 ~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~lp~~~~~ 480 (791)
.+|.+...++.+++|.+...++..+| .++.+.+|+.|.+++|.+..+... ++.++.||.+.++.|+.- ..+|..+..
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcc
Confidence 34444444445555555444444444 244444444455554444333322 344444555554444211 124444444
Q ss_pred cccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHh
Q 038105 481 LVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEEL 560 (791)
Q Consensus 481 l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 560 (791)
+..|.+|||++|++++.|..+.+..++..|+|++|++ .++|..++-+++.|-.|++++|.+.. +|...
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~-----------LPPQ~ 169 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEM-----------LPPQI 169 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhh-----------cCHHH
Confidence 4455555555555555554444444555555554443 44444444444445455555444322 33344
Q ss_pred cCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccccc
Q 038105 561 LGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQ 640 (791)
Q Consensus 561 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 640 (791)
..+.+|++|++++|++.-++ +........++.|.++.......-.+.++..+.+|..++++.|.+.. +|..+..+.+
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~l~~ 246 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYKLRN 246 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhhhhh
Confidence 44444555555544443221 11111122223333333322222223445555566666666555443 4555555555
Q ss_pred ccccccccCCCCEEEE
Q 038105 641 KSRQPYVFRSLDKITV 656 (791)
Q Consensus 641 l~~l~~~~~~L~~L~l 656 (791)
|..+.++-|.+++|.+
T Consensus 247 LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNM 262 (1255)
T ss_pred hheeccCcCceeeeec
Confidence 5555555555555544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=1.6e-18 Score=210.31 Aligned_cols=324 Identities=20% Similarity=0.272 Sum_probs=224.3
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCC-CcccchhhhccCCcccEEeecCc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNE-LTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
-+++...+..+..+|..+ .+.+|+.|++.++.+..++ .+..+++|+.|++++|. +..++ . +..+++|+.|++++|
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSDC 667 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecCC
Confidence 456677778888898877 4689999999999998886 46789999999999886 44444 3 788999999999999
Q ss_pred cccccccccccCcccccEEecCCC-cccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNT-EVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYG 547 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 547 (791)
..+..+|..++.+++|++|++++| .+..+|..+ ++++|+.|++++|..++.+|. ...+|++|++.+|.+..+
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-- 740 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-- 740 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc--
Confidence 889999999999999999999997 677888776 899999999999987777775 256899999999987653
Q ss_pred ccccchhchHHHhcCCCCCcEEEEEeechhhHHHhh-----hcccccCCcccceeecCCCCCcccccccccccccceEEe
Q 038105 548 RFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFL-----SSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYF 622 (791)
Q Consensus 548 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l 622 (791)
|..+ .+++|+.|.+..+....+.... ........++.|++..+.....++ ..++++++|++|+|
T Consensus 741 ---------P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~L 809 (1153)
T PLN03210 741 ---------PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEI 809 (1153)
T ss_pred ---------cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEEC
Confidence 2222 4566777766553321111000 001123456667776665444443 45777888888888
Q ss_pred cccCCCCceeeccccccccccc-----------ccccCCCCEEEEecCCCccccc-chhcCCCCceEEEccCcchhHHhh
Q 038105 623 RSCGWSGGLKIDYKDMVQKSRQ-----------PYVFRSLDKITVSSCRNLKHLT-FLVFAPNLKSISVTHCDDMEEIIS 690 (791)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~l~~l-----------~~~~~~L~~L~l~~~~~L~~l~-~l~~~~nL~~L~l~~c~~L~~l~~ 690 (791)
++|...+.+|..+ .+.+|..+ .....+|+.|.+.+. .++.++ .+..+++|+.|++++|++|+.++.
T Consensus 810 s~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 810 ENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 8887666665443 11111111 111234445554443 233333 356678889999999988887644
Q ss_pred cCCCCCCCCcccccCCcCcccceecccccccccccccCC-------------CCCCCccEEEEcCCCCCCCCC
Q 038105 691 AGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYWKP-------------LPLPRLKELEVEDCHSLKKLP 750 (791)
Q Consensus 691 ~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------------~~~~~L~~L~i~~c~~L~~L~ 750 (791)
....+++|+.|.+.+|.++..+.... ..+|....+.+.+|.+|..-.
T Consensus 888 -------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 888 -------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA 947 (1153)
T ss_pred -------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh
Confidence 24467889999999999887654421 124555666788888776443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=8.5e-20 Score=188.51 Aligned_cols=167 Identities=24% Similarity=0.368 Sum_probs=135.9
Q ss_pred CcccCCCCccCccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccc
Q 038105 400 GLTEAPADVRGWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI 478 (791)
Q Consensus 400 ~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~ 478 (791)
....+|..+-.+..|+.|+++.|++...| .+...+++-+|++++|.+..+|...|-++..|-+||||+| .+..+|+.+
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~ 169 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQI 169 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHH
Confidence 44578888888999999999999998888 4677788999999999999999888889999999999998 788899999
Q ss_pred cCcccccEEecCCCccccc-chhhhcCCCCceeeccCccc-ccccchhHhhcCcCCCeeeeeecCccccccccccchhch
Q 038105 479 SKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDV-LVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENV 556 (791)
Q Consensus 479 ~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~-~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 556 (791)
..|.+|++|+|++|.+..+ -..+..+++|+.|.+++++. ...+|.+ +..+.+|+.++++.|.++. +
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp~-----------v 237 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLPI-----------V 237 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCCc-----------c
Confidence 9999999999999865422 11233677888888888764 2467776 6889999999999888654 7
Q ss_pred HHHhcCCCCCcEEEEEeechhhH
Q 038105 557 AEELLGLKHLEVLEITFRSFEAY 579 (791)
Q Consensus 557 ~~~l~~l~~L~~L~l~~~~~~~~ 579 (791)
|+.+-++.+|+.|++++|.++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeee
Confidence 78888889999999998887653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=8.7e-20 Score=179.36 Aligned_cols=225 Identities=21% Similarity=0.270 Sum_probs=149.3
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRML 471 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 471 (791)
++..+++.....|++++.+..+..++++.|++..+| .+..+..++.+++++|.+...+++ ++.+..|..++..+| .+
T Consensus 72 vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N-~i 149 (565)
T KOG0472|consen 72 VLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNN-QI 149 (565)
T ss_pred EEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCch-HHHHhhhhhhhcccc-cc
Confidence 445566777778888887778888888888887777 466777788888888887777776 567777777777777 67
Q ss_pred ccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccccccc
Q 038105 472 QQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSS 551 (791)
Q Consensus 472 ~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 551 (791)
..+|..++++.+|..|++.+|+++.+|+..-+++.|++||...|-+ +.+|+. ++.+.+|..|++..|++..++
T Consensus 150 ~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L-~tlP~~-lg~l~~L~~LyL~~Nki~~lP----- 222 (565)
T KOG0472|consen 150 SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL-ETLPPE-LGGLESLELLYLRRNKIRFLP----- 222 (565)
T ss_pred ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh-hcCChh-hcchhhhHHHHhhhcccccCC-----
Confidence 7777777777778888888887777777666677788887776654 777776 677777877777777766533
Q ss_pred chhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCce
Q 038105 552 WYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGL 631 (791)
Q Consensus 552 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 631 (791)
+|.+|..|..|.++.|.+.-+++-... ..-..+.+.--++.-...+..++-+++|++|++++|.+++ +
T Consensus 223 -------ef~gcs~L~Elh~g~N~i~~lpae~~~----~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-L 290 (565)
T KOG0472|consen 223 -------EFPGCSLLKELHVGENQIEMLPAEHLK----HLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-L 290 (565)
T ss_pred -------CCCccHHHHHHHhcccHHHhhHHHHhc----ccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-C
Confidence 334444444444444444333221110 0001111111111111223567788999999999999887 7
Q ss_pred eeccccc
Q 038105 632 KIDYKDM 638 (791)
Q Consensus 632 ~~~~~~~ 638 (791)
|.+++.+
T Consensus 291 p~sLgnl 297 (565)
T KOG0472|consen 291 PYSLGNL 297 (565)
T ss_pred Ccccccc
Confidence 8887765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=2.5e-18 Score=169.14 Aligned_cols=122 Identities=32% Similarity=0.496 Sum_probs=114.5
Q ss_pred EEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccc
Q 038105 394 LVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQ 473 (791)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 473 (791)
++...+-++.+|..++.+.++..|+++.|++..+|.++.|..|..|.+..|.+..++....+++++|.+||+++| .+++
T Consensus 188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke 266 (565)
T KOG0472|consen 188 LDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKE 266 (565)
T ss_pred cccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-cccc
Confidence 344566788999999999999999999999999999999999999999999999999998889999999999999 8999
Q ss_pred ccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCccc
Q 038105 474 LPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 474 lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 517 (791)
.|..++-+.+|++||+++|.|+.+|-+++++ .|+.|-+.||++
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCch
Confidence 9999999999999999999999999999999 999999999986
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1.5e-14 Score=162.73 Aligned_cols=168 Identities=22% Similarity=0.232 Sum_probs=129.7
Q ss_pred HHHHHhhhhcccccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCC
Q 038105 379 ALWITCEIEKEKEGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMP 458 (791)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 458 (791)
+......+.......+.++..++.++|..+. .+++.|++.+|.+..+|.. +++|++|++++|.++.++. ..+
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~ 262 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPP 262 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----ccc
Confidence 3333334444446678888889999998776 5899999999999998864 5899999999999988764 247
Q ss_pred cccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeee
Q 038105 459 CLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMF 538 (791)
Q Consensus 459 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~ 538 (791)
+|+.|++++| .+..+|... .+|+.|++++|+++.+|.. +++|+.|++++|.+ ..+|.. ..+|+.|+++
T Consensus 263 sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls 330 (788)
T PRK15387 263 GLLELSIFSN-PLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL----PSELCKLWAY 330 (788)
T ss_pred ccceeeccCC-chhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC----cccccccccc
Confidence 8999999999 677777533 5788999999999988863 47899999999987 567652 3468889999
Q ss_pred ecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHH
Q 038105 539 ATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQ 580 (791)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 580 (791)
+|.++.++. +| .+|+.|++++|.+..++
T Consensus 331 ~N~L~~LP~--------lp------~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 331 NNQLTSLPT--------LP------SGLQELSVSDNQLASLP 358 (788)
T ss_pred cCccccccc--------cc------cccceEecCCCccCCCC
Confidence 998766321 11 47899999999887644
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.4e-17 Score=142.45 Aligned_cols=164 Identities=22% Similarity=0.383 Sum_probs=136.9
Q ss_pred cccCCCCccCccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccccc
Q 038105 401 LTEAPADVRGWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGIS 479 (791)
Q Consensus 401 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 479 (791)
+..+ ..+.+++++++|.++.|++..+| .+..+.+|++|++++|.+..++.. ++.+++|+.|++.-| .+..+|..|+
T Consensus 23 f~~~-~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEEL-PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred Hhhc-ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 3344 44556788889999999988766 678889999999999999888877 788999999999888 7888899999
Q ss_pred CcccccEEecCCCccc--ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchH
Q 038105 480 KLVSLQLLDISNTEVE--ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVA 557 (791)
Q Consensus 480 ~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 557 (791)
.++.|++|||++|++. .+|..|-.++-|+.|+++.|.+ .-+|+. ++++++|+.|.+..|.+-+ +|
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll~-----------lp 166 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLLS-----------LP 166 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchhh-----------Cc
Confidence 9999999999998887 6888888888999999999987 777877 6899999999998887544 77
Q ss_pred HHhcCCCCCcEEEEEeechhhHH
Q 038105 558 EELLGLKHLEVLEITFRSFEAYQ 580 (791)
Q Consensus 558 ~~l~~l~~L~~L~l~~~~~~~~~ 580 (791)
.+++.+..|+.|.+.+|.++-++
T Consensus 167 keig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred HHHHHHHHHHHHhcccceeeecC
Confidence 88888999999999888876544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=6e-17 Score=140.94 Aligned_cols=170 Identities=20% Similarity=0.372 Sum_probs=147.0
Q ss_pred CCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcC
Q 038105 425 DNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKAL 504 (791)
Q Consensus 425 ~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l 504 (791)
..++.+..++++..|-+++|.++..++. +..+++|++|++++| .+..+|.+++.++.|+.|++.-|++..+|.+|+.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 4456677888999999999999999988 789999999999999 89999999999999999999999999999999999
Q ss_pred CCCceeeccCcccccc-cchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhh
Q 038105 505 VNLKCLNLDWTDVLVE-VPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFL 583 (791)
Q Consensus 505 ~~L~~L~l~~~~~~~~-~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 583 (791)
+.|+.||+..|++... +|.. |..++.|+-|+++.|.+.- +|.+++++++|+.|.+..|.+..++
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~-----------lp~dvg~lt~lqil~lrdndll~lp--- 166 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI-----------LPPDVGKLTNLQILSLRDNDLLSLP--- 166 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc-----------CChhhhhhcceeEEeeccCchhhCc---
Confidence 9999999999987554 4555 6789999999999998543 7889999999999999888765543
Q ss_pred hcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccc
Q 038105 584 SSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKD 637 (791)
Q Consensus 584 ~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 637 (791)
..++.++.|++|++.+|.+.. +|+.++.
T Consensus 167 -------------------------keig~lt~lrelhiqgnrl~v-lppel~~ 194 (264)
T KOG0617|consen 167 -------------------------KEIGDLTRLRELHIQGNRLTV-LPPELAN 194 (264)
T ss_pred -------------------------HHHHHHHHHHHHhcccceeee-cChhhhh
Confidence 457788999999999998775 6766653
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=4.1e-16 Score=169.49 Aligned_cols=229 Identities=16% Similarity=0.194 Sum_probs=109.8
Q ss_pred CCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccccccc------------chhchHHHhcCCCCCcEEEEEe
Q 038105 506 NLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSS------------WYENVAEELLGLKHLEVLEITF 573 (791)
Q Consensus 506 ~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~ 573 (791)
+|+.++++++++ ..+| .+++.|.+|+.++..+|.++.++..... ..+.+|..+..+++|++|++..
T Consensus 242 nl~~~dis~n~l-~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNL-SNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhh-hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 555566666655 5666 4467777777777777776554433211 1124667777889999999999
Q ss_pred echhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCCE
Q 038105 574 RSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDK 653 (791)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 653 (791)
|.+..++..+-... ...+..+..+... ........-.....|+.|++.+|.+.....+-+..+..|..++++.|.|..
T Consensus 320 N~L~~lp~~~l~v~-~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVL-NASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred ccccccchHHHhhh-hHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 98876654221100 0000111000000 000000001123456666666666665544444444444444444444444
Q ss_pred EEEecCCCcccccchhcCCC-CceEE--EccCcchhHHhhcCCCCC-CCCcccccCCcCcccceecccccccccccccCC
Q 038105 654 ITVSSCRNLKHLTFLVFAPN-LKSIS--VTHCDDMEEIISAGEFDD-IPEMTGIISSPFAKLQHLELWGLKSLKSIYWKP 729 (791)
Q Consensus 654 L~l~~~~~L~~l~~l~~~~n-L~~L~--l~~c~~L~~l~~~~~~~~-~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 729 (791)
+.-+...+|+.|..|....| |+.|- +..|..|+.+....|... .| ....++.|+.++++ |.+++......
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-----e~~~l~qL~~lDlS-~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-----ELAQLPQLKVLDLS-CNNLSEVTLPE 471 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-----hhhhcCcceEEecc-cchhhhhhhhh
Confidence 44444444444444433322 23222 224555555554444211 11 12245566666665 34555544322
Q ss_pred CCC-CCccEEEEcCCC
Q 038105 730 LPL-PRLKELEVEDCH 744 (791)
Q Consensus 730 ~~~-~~L~~L~i~~c~ 744 (791)
..- |+|++|+++|.+
T Consensus 472 ~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 472 ALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hCCCcccceeeccCCc
Confidence 211 566666666654
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=1.8e-12 Score=156.96 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=184.5
Q ss_pred cCCCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC-ccCHHHHHHHHH
Q 038105 46 HTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIG 124 (791)
Q Consensus 46 ~~~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 124 (791)
+.++.+|-|..-++++.+ ....+++.|+|++|.||||++.++++.. + .++|+++.. +.+...+...++
T Consensus 11 ~~~~~~~~R~rl~~~l~~----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG----ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred CCccccCcchHHHHHHhc----ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHH
Confidence 445678888876666543 3357899999999999999999998643 2 589999864 445555556666
Q ss_pred HHhCCCCCC-----------cccccHHHHHHHHHHHhC--CceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEE
Q 038105 125 KKIGLYTDS-----------WKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVV 188 (791)
Q Consensus 125 ~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~ii 188 (791)
..++..... ............+...+. +.+++|||||++..++ .+.+...+.. ...+.++|
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~lv 156 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTLV 156 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEEE
Confidence 655311110 011122333444444443 6799999999965422 2233333443 45578899
Q ss_pred EEcCcHHHHh--hc-cccceEEec----cCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhh
Q 038105 189 FTTRFVDVCG--RM-EDRRMFKVA----CLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMA 261 (791)
Q Consensus 189 vTtR~~~~~~--~~-~~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 261 (791)
||||...... .. ......++. +|+.+|+.+++....+..- ..+.+.++.+.|+|+|+++..++..+.
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999732211 11 122345555 9999999999988765422 256788999999999999999887775
Q ss_pred cCCC-HHHHHHHHHHHhhhccccCCC-chhhhhhhhh-cccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCccc
Q 038105 262 YKKT-PEEWRYAIEVLRRSASEFEGL-GKEVYPLLKF-SYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLD 338 (791)
Q Consensus 262 ~~~~-~~~w~~~l~~l~~~~~~~~~~-~~~l~~~l~~-s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~ 338 (791)
.... .... ... ..+. ...+...+.- .++.||+ ..+..++..++++ .++.. +.. ...
T Consensus 231 ~~~~~~~~~---~~~-------~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~- 289 (903)
T PRK04841 231 QNNSSLHDS---ARR-------LAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVT- 289 (903)
T ss_pred hCCCchhhh---hHh-------hcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHc-
Confidence 4321 1110 111 1111 1245555444 4889999 8999999999986 23322 211 111
Q ss_pred ccccchhhhhHHHHHHHHHhcccccc---cCCcEEechHHHHHHHHHH
Q 038105 339 EAKFGTQNQGYHIVTTLVRACLLEEV---EDDQVKMHDVIRDMALWIT 383 (791)
Q Consensus 339 ~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~~h~li~~~~~~~~ 383 (791)
..+.....+..|...+++... +..+|++|++++++.+...
T Consensus 290 -----~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 290 -----GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -----CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 123346679999999996532 2347899999999998765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=7.2e-14 Score=158.40 Aligned_cols=162 Identities=25% Similarity=0.331 Sum_probs=115.0
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
...+...+.++..+|..+. .+++.|++++|.+..+|.. ...+|++|++++|.+..++... ..+|+.|++++| .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-R 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChh-hccCCCEEECCCCccccCChhh---hccccEEECcCC-c
Confidence 3456666777778876654 5788888888888887742 2358888888888887776542 246888888888 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|++ ..+|..+ .++|+.|++++|.++.++
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~l---p~sL~~L~Ls~N~Lt~LP---- 320 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI-RTLPAHL---PSGITHLNVQSNSLTALP---- 320 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc-ccCcccc---hhhHHHHHhcCCccccCC----
Confidence 667777654 478888888888888887653 4788888888876 5677542 246888888888766532
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHH
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQ 580 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 580 (791)
..+ .++|+.|++++|.+..++
T Consensus 321 -------~~l--~~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 321 -------ETL--PPGLKTLEAGENALTSLP 341 (754)
T ss_pred -------ccc--cccceeccccCCccccCC
Confidence 212 246888888887766543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.5e-13 Score=155.91 Aligned_cols=200 Identities=22% Similarity=0.330 Sum_probs=139.0
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
+...|+++++.+..+|.. -.++|+.|++++|.+..++...+ .+|++|++++| .+..+|..+. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCC
Confidence 556799999998888852 13589999999999998887643 58999999999 6778887654 47999999999
Q ss_pred cccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEE
Q 038105 493 EVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEIT 572 (791)
Q Consensus 493 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 572 (791)
.+..+|..+. .+|+.|++++|++ ..+|..+ ..+|++|++++|.++.++. .+. ++|+.|+++
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l---~~sL~~L~Ls~N~Lt~LP~-----------~lp--~sL~~L~Ls 312 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKI-SCLPENL---PEELRYLSVYDNSIRTLPA-----------HLP--SGITHLNVQ 312 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCcc-Ccccccc---CCCCcEEECCCCccccCcc-----------cch--hhHHHHHhc
Confidence 9999998765 5899999999987 6788752 3589999999998776432 221 357778888
Q ss_pred eechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCC
Q 038105 573 FRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLD 652 (791)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 652 (791)
+|.+..++. .+ .++|+.|++++|.+.+ +|..+ +++|+
T Consensus 313 ~N~Lt~LP~----------------------------~l--~~sL~~L~Ls~N~Lt~-LP~~l------------~~sL~ 349 (754)
T PRK15370 313 SNSLTALPE----------------------------TL--PPGLKTLEAGENALTS-LPASL------------PPELQ 349 (754)
T ss_pred CCccccCCc----------------------------cc--cccceeccccCCcccc-CChhh------------cCccc
Confidence 877654321 01 1456666666666554 33221 24566
Q ss_pred EEEEecCCCcccccchhcCCCCceEEEccCc
Q 038105 653 KITVSSCRNLKHLTFLVFAPNLKSISVTHCD 683 (791)
Q Consensus 653 ~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~ 683 (791)
.|.++++ ++..++. ...++|+.|+|++|.
T Consensus 350 ~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 350 VLDVSKN-QITVLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred EEECCCC-CCCcCCh-hhcCCcCEEECCCCc
Confidence 6666655 3443332 123566677776653
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=2.7e-11 Score=131.42 Aligned_cols=298 Identities=14% Similarity=0.077 Sum_probs=173.9
Q ss_pred CCCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 47 TEPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 47 ~~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
.++.++||+.+++++...+.. +...+.+.|+|+.|+|||++++.+++++.. ....-.++++++....+...++..+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE-IAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEECCcCCCHHHHHHHH
Confidence 457899999999999999854 234567899999999999999999998732 2223457788888777888999999
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCcc------cccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERV------DLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
+.++..........+.++....+.+.+. +++.+||||+++... .+..+...+... .+.+..+|.++.+..
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~--~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY--PGARIGVIGISSDLT 184 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc--CCCeEEEEEEECCcc
Confidence 9998652211123345667777777764 457999999997643 122222222221 111233566655443
Q ss_pred HHhhc-------cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHc----CCCchHHHHHHHHh--h-
Q 038105 196 VCGRM-------EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKEC----DGLPLALITIGRAM--A- 261 (791)
Q Consensus 196 ~~~~~-------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l--~- 261 (791)
..... .....+.+.+++.++..+++..++.... ....-.++.++.+++.+ |..+.|+..+-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 32211 1124689999999999999998874221 11111233444444444 44666766654322 1
Q ss_pred -c-C--CCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCCC--CcccChHhHHHH--HHH
Q 038105 262 -Y-K--KTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPE--DYSIYKRDLIDC--WIC 333 (791)
Q Consensus 262 -~-~--~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~--~~~~~~~~l~~~--w~~ 333 (791)
. . -+.+....+.+.... ....-.+..||. +.|..+..++.... ...+....+... .++
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 1 1 255555555554421 122345778887 44444443332211 123444444432 222
Q ss_pred cCcccccccchhhhhHHHHHHHHHhcccccc
Q 038105 334 EGFLDEAKFGTQNQGYHIVTTLVRACLLEEV 364 (791)
Q Consensus 334 ~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 364 (791)
+.+ ...+-.......++..|...+++...
T Consensus 330 ~~~--~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 330 EEL--GYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHc--CCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 111 01111335567788999999998753
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=2.4e-14 Score=155.87 Aligned_cols=245 Identities=22% Similarity=0.375 Sum_probs=127.9
Q ss_pred cceeEEEcccCCCCCCCC-CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecC
Q 038105 412 EMVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDIS 490 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~ 490 (791)
.++++++++.+.+..+|+ +..|.+|+.+...+|.+..++.. +..+..|++|++.+| .+..+|....++.+|++|+|.
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence 344444444444444442 24444444444444444443333 334444444444444 444444444444555555555
Q ss_pred CCcccccchhh-hcCC-CCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcE
Q 038105 491 NTEVEELPEEL-KALV-NLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEV 568 (791)
Q Consensus 491 ~~~l~~lp~~~-~~l~-~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 568 (791)
.|++..+|+.+ ..+. .|..|+.+.|++ ...|..--..++.|+.|++.+|.++. .....|.+.++|+.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd----------~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTD----------SCFPVLVNFKHLKV 387 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccc----------cchhhhccccceee
Confidence 55444444431 1111 134444444433 33332111234445555555555433 35566778888888
Q ss_pred EEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccccccccccccc
Q 038105 569 LEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVF 648 (791)
Q Consensus 569 L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 648 (791)
|++++|.+..+++ ..+.++..|++|+|+||.+.. +|..+.. +
T Consensus 388 LhLsyNrL~~fpa---------------------------s~~~kle~LeeL~LSGNkL~~-Lp~tva~----------~ 429 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPA---------------------------SKLRKLEELEELNLSGNKLTT-LPDTVAN----------L 429 (1081)
T ss_pred eeecccccccCCH---------------------------HHHhchHHhHHHhcccchhhh-hhHHHHh----------h
Confidence 8888887765442 346677788888888887765 5555543 3
Q ss_pred CCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceeccccccc
Q 038105 649 RSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKS 721 (791)
Q Consensus 649 ~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~ 721 (791)
..|+.|...+. ++..+|.+..++.|+.++++ |.+|+.+..... .+ -|+|++|++.+..+
T Consensus 430 ~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~----------~p--~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 430 GRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA----------LP--SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhhhhhhh----------CC--CcccceeeccCCcc
Confidence 44444444332 34555666677777778777 445665533211 11 16778887777654
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=1.4e-12 Score=146.86 Aligned_cols=253 Identities=21% Similarity=0.191 Sum_probs=159.8
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
.-..|+++++.+..+|... ..+|+.|.+++|.++.++. .+++|++|++++| .++.+|.. .++|+.|++++|
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 4557899999999888521 2589999999999988764 3589999999999 77788853 468999999999
Q ss_pred cccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEE
Q 038105 493 EVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEIT 572 (791)
Q Consensus 493 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 572 (791)
.++.+|... .+|+.|++++|.+ ..+|. ..++|+.|++++|.++.++. +| .+|+.|.++
T Consensus 273 ~L~~Lp~lp---~~L~~L~Ls~N~L-t~LP~----~p~~L~~LdLS~N~L~~Lp~--------lp------~~L~~L~Ls 330 (788)
T PRK15387 273 PLTHLPALP---SGLCKLWIFGNQL-TSLPV----LPPGLQELSVSDNQLASLPA--------LP------SELCKLWAY 330 (788)
T ss_pred chhhhhhch---hhcCEEECcCCcc-ccccc----cccccceeECCCCccccCCC--------Cc------ccccccccc
Confidence 998887633 5788999999987 67775 35789999999998776422 11 357778888
Q ss_pred eechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCC
Q 038105 573 FRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLD 652 (791)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 652 (791)
+|.+..++.+ ...++.|+++.. .+..++ . + ..+|+.|++++|.+.. +|. ...+|+
T Consensus 331 ~N~L~~LP~l------p~~Lq~LdLS~N-~Ls~LP-~-l--p~~L~~L~Ls~N~L~~-LP~-------------l~~~L~ 385 (788)
T PRK15387 331 NNQLTSLPTL------PSGLQELSVSDN-QLASLP-T-L--PSELYKLWAYNNRLTS-LPA-------------LPSGLK 385 (788)
T ss_pred cCcccccccc------ccccceEecCCC-ccCCCC-C-C--Ccccceehhhcccccc-Ccc-------------cccccc
Confidence 8887654421 223444544432 122211 1 1 2356666666665543 332 123466
Q ss_pred EEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccccccccCCCCC
Q 038105 653 KITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYWKPLPL 732 (791)
Q Consensus 653 ~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 732 (791)
.|+++++ .+..++.+ .++|+.|+++++. ++. ++..+.+|+.|.+.++ .++.+|.....+
T Consensus 386 ~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-Lss----------------IP~l~~~L~~L~Ls~N-qLt~LP~sl~~L 444 (788)
T PRK15387 386 ELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTS----------------LPMLPSGLLSLSVYRN-QLTRLPESLIHL 444 (788)
T ss_pred eEEecCC-cccCCCCc--ccCCCEEEccCCc-CCC----------------CCcchhhhhhhhhccC-cccccChHHhhc
Confidence 6666655 34444432 3567777777653 222 1222345666776653 355555433334
Q ss_pred CCccEEEEcC
Q 038105 733 PRLKELEVED 742 (791)
Q Consensus 733 ~~L~~L~i~~ 742 (791)
++|+.|++++
T Consensus 445 ~~L~~LdLs~ 454 (788)
T PRK15387 445 SSETTVNLEG 454 (788)
T ss_pred cCCCeEECCC
Confidence 4444444443
No 23
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=8.5e-11 Score=126.12 Aligned_cols=300 Identities=14% Similarity=0.132 Sum_probs=171.8
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC---CEEEEEEeCCccCHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---DYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 121 (791)
++.++||++++++|...+.. +...+.+.|+|++|+|||++++.+++.+....... -.++|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45799999999999999874 33557899999999999999999998763211111 2567888887778888999
Q ss_pred HHHHHhC---CCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCcc-c----ccccccCCCCCCCCCCCcEEEEEc
Q 038105 122 TIGKKIG---LYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERV-D----LKKVGVPLPSRSNSPKNSAVVFTT 191 (791)
Q Consensus 122 ~i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~----~~~~~~~l~~~~~~~~~~~iivTt 191 (791)
.+++++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+..........+....+|.++
T Consensus 94 ~i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 94 ELANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999883 32211 12234555666666663 568999999998662 1 112111100000011234455555
Q ss_pred CcHHHHhhc-------cccceEEeccCChHHHHHHHHHHhCcc--ccCCCCChHHHHHHHHHHcCCCchH-HHHHHHHh-
Q 038105 192 RFVDVCGRM-------EDRRMFKVACLSDEDAWELFREKVGEE--TIESHHSIPELAQTVAKECDGLPLA-LITIGRAM- 260 (791)
Q Consensus 192 R~~~~~~~~-------~~~~~~~l~~l~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~~~l- 260 (791)
......... .....+.+++++.+|..+++..++... ....+++.-+.+.+++..+.|.|.. +..+-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 443321111 112468999999999999999987421 1012222223445566677788843 33322211
Q ss_pred ---hc---CCCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccC--CCCcccChHhHHHHHH
Q 038105 261 ---AY---KKTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLY--PEDYSIYKRDLIDCWI 332 (791)
Q Consensus 261 ---~~---~~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f--~~~~~~~~~~l~~~w~ 332 (791)
.. .-+.+..+.+.+.+.. ....-.+..||. +.+..+..++.. ..+..+....+...+.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 1245555555544421 122335567776 545444333311 1333455555555321
Q ss_pred --HcCcccccccchhhhhHHHHHHHHHhcccccc
Q 038105 333 --CEGFLDEAKFGTQNQGYHIVTTLVRACLLEEV 364 (791)
Q Consensus 333 --~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 364 (791)
++.+ ...+-...+...++..|...|++...
T Consensus 319 ~~~~~~--~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCEDI--GVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHhc--CCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 11234456777788888888888754
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.38 E-value=2.6e-11 Score=132.37 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=195.8
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKK 126 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 126 (791)
+...|-|..-++. |....+.+.+.|..|+|-||||++.+++... ..-..|.|++++... +.......++..
T Consensus 18 ~~~~v~R~rL~~~----L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 18 PDNYVVRPRLLDR----LRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred cccccccHHHHHH----HhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHH
Confidence 5556777665554 4445578999999999999999999998743 455679999987654 566777777777
Q ss_pred hCCCCCCc-----------ccccHHHHHHHHHHHhCC--ceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEE
Q 038105 127 IGLYTDSW-----------KDKRLEEKAQDIFKTLSK--KKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFT 190 (791)
Q Consensus 127 l~~~~~~~-----------~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivT 190 (791)
++...+.. ...+...+...+...+.. ++.++||||..-..+ ...+...+.. .+.+.++|||
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~ 166 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVT 166 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEE
Confidence 66322111 122344455666665543 689999999964322 2334444444 6678999999
Q ss_pred cCcHHHHhh--cc-ccceEEec----cCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcC
Q 038105 191 TRFVDVCGR--ME-DRRMFKVA----CLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYK 263 (791)
Q Consensus 191 tR~~~~~~~--~~-~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 263 (791)
||+...... +. .+..+++. .|+.+|+.++|....+..- .+..++.+.+.++|.+-|+..++-.++..
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 997544211 11 11223332 4889999999988864322 25678999999999999999999888743
Q ss_pred CCHHHHHHHHHHHhhhccccCCCchhhhhhh-hhcccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCccccccc
Q 038105 264 KTPEEWRYAIEVLRRSASEFEGLGKEVYPLL-KFSYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKF 342 (791)
Q Consensus 264 ~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l-~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~ 342 (791)
.+.+.-.. .+++..+-+...+ .--+|.||+ .+|..++.+++++.- . ..+... .
T Consensus 241 ~~~~q~~~----------~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f---~-~eL~~~-----------L 294 (894)
T COG2909 241 TSAEQSLR----------GLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF---N-DELCNA-----------L 294 (894)
T ss_pred CcHHHHhh----------hccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh---h-HHHHHH-----------H
Confidence 44332222 2222222344433 346899999 899999999998531 1 111111 2
Q ss_pred chhhhhHHHHHHHHHhcccccc---cCCcEEechHHHHHHHHHHhh
Q 038105 343 GTQNQGYHIVTTLVRACLLEEV---EDDQVKMHDVIRDMALWITCE 385 (791)
Q Consensus 343 ~~~~~~~~~l~~L~~~~ll~~~---~~~~~~~h~li~~~~~~~~~~ 385 (791)
..++.+...++.|..++++... ....|+.|.++.+|.+.-...
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 3445667789999999997643 678999999999998766544
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.37 E-value=3.2e-12 Score=128.27 Aligned_cols=198 Identities=20% Similarity=0.217 Sum_probs=105.2
Q ss_pred ccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHH---------
Q 038105 51 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE--------- 121 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~--------- 121 (791)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.. ......++|+.............
T Consensus 1 F~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINEL---KEKGYKVVYIDFLEESNESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHC---T--EECCCHHCCTTBSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHh---hhcCCcEEEEecccchhhhHHHHHHHHHHHHH
Confidence 799999999999998875 57899999999999999999999986 22222345555433332221111
Q ss_pred HHHHHhCCCCCC--------cccccHHHHHHHHHHHhC--CceEEEEEcCccCcc-ccc-------ccccCCCCCCCCCC
Q 038105 122 TIGKKIGLYTDS--------WKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERV-DLK-------KVGVPLPSRSNSPK 183 (791)
Q Consensus 122 ~i~~~l~~~~~~--------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~~-------~~~~~l~~~~~~~~ 183 (791)
.+.+.+...... ............+.+.+. +++++||+||++... ... .+...+.... ...
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccC
Confidence 111112111000 011223333444444443 245999999997665 111 1222221111 123
Q ss_pred CcEEEEEcCcHHHHhh--------ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 184 NSAVVFTTRFVDVCGR--------MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 184 ~~~iivTtR~~~~~~~--------~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+..+|+++........ ......+.+++|+.+++++++...+... ..- +..++..++|++.+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 3445555444434322 1233459999999999999999976443 111 22366789999999999998865
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-13 Score=136.24 Aligned_cols=239 Identities=20% Similarity=0.242 Sum_probs=171.4
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..++..+.++..+|..+. .....+.+..|.|..+| .+..+++||.|+++.|.++.+.++.|.+++.|..|-+.+++
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 456677889999998887 56778999999999999 58999999999999999999999999999999888888866
Q ss_pred cccccccc-ccCcccccEEecCCCcccccc-hhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC------
Q 038105 470 MLQQLPMG-ISKLVSLQLLDISNTEVEELP-EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG------ 541 (791)
Q Consensus 470 ~~~~lp~~-~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~------ 541 (791)
.++.+|+. |++|..|+.|.+.-|++.-++ ..+..+++|..|.+..|.+ ..++...+..+..++++.+..|.
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccc
Confidence 89999975 899999999999999998554 4589999999999999986 77777667888888888776554
Q ss_pred cccccc--------------------------------------cccc--------chhchHHHhcCCCCCcEEEEEeec
Q 038105 542 IRSVYG--------------------------------------RFSS--------WYENVAEELLGLKHLEVLEITFRS 575 (791)
Q Consensus 542 ~~~~~~--------------------------------------~~~~--------~~~~~~~~l~~l~~L~~L~l~~~~ 575 (791)
+..... ++++ ....-...|..+++|++|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 111100 0000 001112447788999999999998
Q ss_pred hhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccc
Q 038105 576 FEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYK 636 (791)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 636 (791)
++.+..- .-.-...++.++|... .+.......+.++..|+.|+|.+|.++...|..|.
T Consensus 286 i~~i~~~--aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 286 ITRIEDG--AFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cchhhhh--hhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 8765421 0001112333333221 12222223466777788888888877765455443
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.32 E-value=3.5e-10 Score=115.79 Aligned_cols=183 Identities=13% Similarity=0.174 Sum_probs=114.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHH--
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIF-- 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-- 147 (791)
+.+.++|+|++|+||||+++.++..+. .... .++|+ +....+..+++..++..++.+... .........+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~--~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~---~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD--QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG---RDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC--CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC---CCHHHHHHHHHHH
Confidence 457899999999999999999998872 1111 22333 233446778889999998875422 22222233333
Q ss_pred --HHh-CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHHHhhc----------cccceEEeccCC
Q 038105 148 --KTL-SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRM----------EDRRMFKVACLS 212 (791)
Q Consensus 148 --~~l-~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~----------~~~~~~~l~~l~ 212 (791)
... .+++.++|+||++... .++.+...............|++|.... ..... .....+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 222 5678999999998653 3343332221110022233455665432 21111 123468899999
Q ss_pred hHHHHHHHHHHhCccccC-CCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 213 DEDAWELFREKVGEETIE-SHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 213 ~~e~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
.+|..+++...+...+.. ...-..+..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999998877543311 112336789999999999999999988765
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.21 E-value=4.5e-10 Score=117.13 Aligned_cols=269 Identities=15% Similarity=0.119 Sum_probs=146.7
Q ss_pred CcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..|||++..++++..++.. .+..+.+.++|++|+|||+||+.+++.. ...+ ..+..........+.. .+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~l~~-~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNL---KITSGPALEKPGDLAA-IL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCE---EEeccchhcCchhHHH-HH
Confidence 4689999999999998863 2245678999999999999999999987 2222 1222211111222221 12
Q ss_pred HHhCCCC----CCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHHhhc
Q 038105 125 KKIGLYT----DSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRM 200 (791)
Q Consensus 125 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~ 200 (791)
..++... ++.+.-. ......+...+.+.+..+|+|+..+...+.. .+ .+..-|..|++...+....
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~------~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL------PPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC------CCeEEEEecCCccccCHHH
Confidence 2222110 0000000 1122334444555555566665433322221 11 2234455566653332111
Q ss_pred --cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhc------C--CCHHHHH
Q 038105 201 --EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAY------K--KTPEEWR 270 (791)
Q Consensus 201 --~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~------~--~~~~~w~ 270 (791)
.....+++++++.++..+++.+.+....... .++.+..|++.|+|.|..+..+...+.. . -+.+...
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~ 223 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL 223 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 1234689999999999999999887544322 2667889999999999766555543210 0 0111111
Q ss_pred HHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHh-hhccCCCCcccChHhHHHHHHHcCcccccccchhhhhH
Q 038105 271 YAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFL-YCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQGY 349 (791)
Q Consensus 271 ~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~-~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~ 349 (791)
.....+...|..++. ..+..+. ..+.+..+ .+....+.... ......+.
T Consensus 224 ------------------~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~ 273 (305)
T TIGR00635 224 ------------------KALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GEDADTIE 273 (305)
T ss_pred ------------------HHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCCcchHH
Confidence 122224556778887 5555555 44555433 34444443322 12334555
Q ss_pred HHHH-HHHHhcccccccCC
Q 038105 350 HIVT-TLVRACLLEEVEDD 367 (791)
Q Consensus 350 ~~l~-~L~~~~ll~~~~~~ 367 (791)
..++ .|++.+++......
T Consensus 274 ~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 274 DVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HhhhHHHHHcCCcccCCch
Confidence 6677 59999999755433
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=4.1e-11 Score=138.37 Aligned_cols=146 Identities=23% Similarity=0.277 Sum_probs=105.6
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCC--CCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNS--IDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
+.+...++.+..++.... .++++.|-+.+|. +..++. +..++.|++|++++|.-....|..++.+-+||||++++
T Consensus 526 rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 526 RRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD 604 (889)
T ss_pred eEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence 445555666666654444 3478888888886 666664 78899999999999874444455589999999999999
Q ss_pred ccccccccccccCcccccEEecCCCcc-cccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC
Q 038105 468 IRMLQQLPMGISKLVSLQLLDISNTEV-EELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG 541 (791)
Q Consensus 468 ~~~~~~lp~~~~~l~~L~~L~L~~~~l-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 541 (791)
+ .+..+|.++++|..|.+||+..+.. ..+|..+..|++|++|.+..... ......++.+.+|++|....+.
T Consensus 605 t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~--~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 605 T-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL--SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred C-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc--ccchhhHHhhhcccchhhheee
Confidence 9 7889999999999999999998854 34555566799999999986642 1112224555566655554444
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.15 E-value=5.2e-10 Score=117.24 Aligned_cols=276 Identities=12% Similarity=0.082 Sum_probs=145.4
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
-.+|+|++..++++..++.. +...+.+.|+|++|+|||++|+.+++.. ...+ .++....... ...+..+
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~~~-~~~l~~~ 96 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPALEK-PGDLAAI 96 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEecccccC-hHHHHHH
Confidence 35699999999999888763 2345789999999999999999999987 2221 1222221111 1112222
Q ss_pred HHHhCCCC----CCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHHhh
Q 038105 124 GKKIGLYT----DSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 124 ~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~ 199 (791)
...+.... ++.+.- .......+...+.+.+..+|+|+..+..... ..+ .+.+-|..|+|...+...
T Consensus 97 l~~l~~~~vl~IDEi~~l-~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l------~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRL-SPVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDL------PPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHhcccCCEEEEecHhhc-chHHHHHHHHHHHhcceeeeeccCcccccee---ecC------CCceEEeecCCcccCCHH
Confidence 22221100 000000 0011122333334444444554442221111 111 123445556664333211
Q ss_pred c--cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHHHHHHh
Q 038105 200 M--EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYAIEVLR 277 (791)
Q Consensus 200 ~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~l~ 277 (791)
. .....+++++++.++..+++.+.+.......+ ++.+..|++.|+|.|..+..+...+. .|.... .
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~ 234 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---G 234 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---C
Confidence 1 12356899999999999999998876553333 57789999999999965554443321 111100 0
Q ss_pred hhccccC-CCchhhhhhhhhcccCCCChhhhHHHh-hhccCCCCcccChHhHHHHHHHcCcccccccchhhhhHHHHH-H
Q 038105 278 RSASEFE-GLGKEVYPLLKFSYDCLPNDAIRSCFL-YCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQGYHIVT-T 354 (791)
Q Consensus 278 ~~~~~~~-~~~~~l~~~l~~s~~~L~~~~~k~~~~-~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~l~-~ 354 (791)
. ..+. ..-......+...+..|++ ..+..+. ....|..+ .+....+.... ....+.+++.++ .
T Consensus 235 ~--~~I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~~~~~~~~~~e~~ 300 (328)
T PRK00080 235 D--GVITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GEERDTIEDVYEPY 300 (328)
T ss_pred C--CCCCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CCCcchHHHHhhHH
Confidence 0 0000 0001233445566777877 5555554 55556544 34544443322 223344555566 8
Q ss_pred HHHhcccccccC
Q 038105 355 LVRACLLEEVED 366 (791)
Q Consensus 355 L~~~~ll~~~~~ 366 (791)
|++.+++.....
T Consensus 301 Li~~~li~~~~~ 312 (328)
T PRK00080 301 LIQQGFIQRTPR 312 (328)
T ss_pred HHHcCCcccCCc
Confidence 999999975533
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=2.7e-12 Score=127.11 Aligned_cols=242 Identities=17% Similarity=0.237 Sum_probs=160.8
Q ss_pred EEcccCCCCCCCCCCCC-CCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC-Ccc
Q 038105 417 LSLMRNSIDNLPTVPTC-PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN-TEV 494 (791)
Q Consensus 417 l~l~~~~~~~l~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~-~~l 494 (791)
++-++..+..+|. ++ +.-..+.+..|.++.+|++.|+.+++||.|||++|.....-|..|.++.+|..|-+.+ |+|
T Consensus 51 VdCr~~GL~eVP~--~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVPA--NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCcc--cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3445555666663 22 4567889999999999999999999999999999955555678899999988888877 899
Q ss_pred cccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEe
Q 038105 495 EELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITF 573 (791)
Q Consensus 495 ~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 573 (791)
+.+|+. |+.|..|+-|.+.-|++ ..++...+..+++|..|.+..|.+..+.. ..+..+..++.+.+..
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i-~Cir~~al~dL~~l~lLslyDn~~q~i~~----------~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHI-NCIRQDALRDLPSLSLLSLYDNKIQSICK----------GTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhh-cchhHHHHHHhhhcchhcccchhhhhhcc----------ccccchhccchHhhhc
Confidence 999986 89999999999998887 77887789999999999999998776433 2455566666666655
Q ss_pred echhhHHHhhhcc----------cccCCccccee-------------------------ecCCCCCcccccccccccccc
Q 038105 574 RSFEAYQTFLSSQ----------KLRSCTQAPFL-------------------------YKFDREESIDVADLANLEQLN 618 (791)
Q Consensus 574 ~~~~~~~~~~~~~----------~~~~~l~~l~l-------------------------~~~~~~~~~~~~~l~~l~~L~ 618 (791)
|.+.+.-.+.... .-.++.+...+ ..|.-....+...+..+++|+
T Consensus 198 np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 198 NPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred CccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence 5532221111100 00011111000 011111112223477899999
Q ss_pred eEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCccccc--chhcCCCCceEEEccC
Q 038105 619 TLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLT--FLVFAPNLKSISVTHC 682 (791)
Q Consensus 619 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~--~l~~~~nL~~L~l~~c 682 (791)
+|++++|.+...-+..|... ..++.|.+... ++..+. .+..+.+|+.|++.+.
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~----------a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGA----------AELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred EeccCCCccchhhhhhhcch----------hhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC
Confidence 99999999988555555543 34444444433 233332 2445566667777664
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.15 E-value=2.1e-11 Score=128.71 Aligned_cols=161 Identities=24% Similarity=0.196 Sum_probs=83.5
Q ss_pred CccceeEEEcccCCCCC-----CC-CCCCCCCccEEEecCCCCcc------cchhhhccCCcccEEeecCcccccccccc
Q 038105 410 GWEMVRRLSLMRNSIDN-----LP-TVPTCPHLLTLFLNDNELTT------ITDDFFQSMPCLTVLKMSDIRMLQQLPMG 477 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~lp~~ 477 (791)
.+.+++.+++.++.+.. ++ .+...++++.|+++++.+.. .....+..+++|++|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 34456666666666532 11 23445556666666665442 11223455666666666666443333334
Q ss_pred ccCccc---ccEEecCCCccc-----ccchhhhcC-CCCceeeccCcccccc----cchhHhhcCcCCCeeeeeecCccc
Q 038105 478 ISKLVS---LQLLDISNTEVE-----ELPEELKAL-VNLKCLNLDWTDVLVE----VPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 478 ~~~l~~---L~~L~L~~~~l~-----~lp~~~~~l-~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
+..+.+ |++|++++|.++ .+...+..+ ++|+.|++++|.+.+. ++.. +..+++|++|++++|.++.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCch
Confidence 443333 666666666654 122334455 6666666666665321 2211 3455566666666666543
Q ss_pred cccccccchhchHHHhcCCCCCcEEEEEeechh
Q 038105 545 VYGRFSSWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 545 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
. ....++..+..+++|+.|++++|.+.
T Consensus 180 ~------~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 180 A------GIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred H------HHHHHHHHHHhCCCCCEEeccCCccC
Confidence 1 01123444555566666666666553
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.11 E-value=9.9e-10 Score=127.61 Aligned_cols=311 Identities=14% Similarity=0.179 Sum_probs=183.8
Q ss_pred ccchHHHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH---HHHHHHHH
Q 038105 51 VVGLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE---KIQETIGK 125 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~--~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~---~~~~~i~~ 125 (791)
++||+.+++.|.+.+.+ .+...++.|.|.+|||||+|+++|.....+.++.|-...+-.......+. +.++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 69999999999999986 34667999999999999999999999884432322222222233332222 22222222
Q ss_pred Hh-------------------CCCCCC--------------------cccccHHH-----HHHHHHHHhC-CceEEEEEc
Q 038105 126 KI-------------------GLYTDS--------------------WKDKRLEE-----KAQDIFKTLS-KKKFALLLD 160 (791)
Q Consensus 126 ~l-------------------~~~~~~--------------------~~~~~~~~-----~~~~l~~~l~-~~~~LlVlD 160 (791)
++ +..... ......+. ....+..+.. .+|.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 22 211100 00000111 2223333333 469999999
Q ss_pred Ccc--CcccccccccCCCCCC---CCCCCcEEEEEcCcH--HHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCC
Q 038105 161 DLW--ERVDLKKVGVPLPSRS---NSPKNSAVVFTTRFV--DVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHH 233 (791)
Q Consensus 161 dv~--~~~~~~~~~~~l~~~~---~~~~~~~iivTtR~~--~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~ 233 (791)
|+. |...++-+...+.... ...+..-.+.|.+.. .+.........|.+.||+..+...++....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 993 2222222222221100 001112223333322 2233334557899999999999999999987633 2
Q ss_pred ChHHHHHHHHHHcCCCchHHHHHHHHhhcC------CCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhh
Q 038105 234 SIPELAQTVAKECDGLPLALITIGRAMAYK------KTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIR 307 (791)
Q Consensus 234 ~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k 307 (791)
...+..+.|+++..|+|+.+..+-..+... .+...|+.-...+.. .+.-+.+...+..-.+.||. ..|
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HHH
Confidence 236789999999999999999999888763 233444443322222 12222466778899999998 899
Q ss_pred HHHhhhccCCCCcccChHhHHHHHHHcCcccccccchhhhhHHHHHHHHHhccccccc-------CC---cEEechHHHH
Q 038105 308 SCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQGYHIVTTLVRACLLEEVE-------DD---QVKMHDVIRD 377 (791)
Q Consensus 308 ~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~-------~~---~~~~h~li~~ 377 (791)
..+...||+...+..+. +...+- .....++...++.|....++...+ .. +-..|+.+++
T Consensus 312 ~Vl~~AA~iG~~F~l~~--La~l~~---------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqq 380 (849)
T COG3899 312 EVLKAAACIGNRFDLDT--LAALAE---------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQ 380 (849)
T ss_pred HHHHHHHHhCccCCHHH--HHHHHh---------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHH
Confidence 99999999987665443 333221 245566666677777776665321 11 1145777777
Q ss_pred HHHHH
Q 038105 378 MALWI 382 (791)
Q Consensus 378 ~~~~~ 382 (791)
.+...
T Consensus 381 aaY~~ 385 (849)
T COG3899 381 AAYNL 385 (849)
T ss_pred HHhcc
Confidence 76433
No 34
>PF05729 NACHT: NACHT domain
Probab=99.10 E-value=5.3e-10 Score=105.31 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCC---CCEEEEEEeCCccCHH---HHHHHHHHHhCCCCCCcccccHHHHHHH
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDYVIWVVVSKDLQLE---KIQETIGKKIGLYTDSWKDKRLEEKAQD 145 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 145 (791)
|++.|+|.+|+||||+++.++..+...... +..++|+......... .+...+........ ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---H
Confidence 589999999999999999999887433221 3567777766544332 34444444432211 11111 2
Q ss_pred HHHHh-CCceEEEEEcCccCccccc---------c-cccCCCCCCCCCCCcEEEEEcCcHHH---HhhccccceEEeccC
Q 038105 146 IFKTL-SKKKFALLLDDLWERVDLK---------K-VGVPLPSRSNSPKNSAVVFTTRFVDV---CGRMEDRRMFKVACL 211 (791)
Q Consensus 146 l~~~l-~~~~~LlVlDdv~~~~~~~---------~-~~~~l~~~~~~~~~~~iivTtR~~~~---~~~~~~~~~~~l~~l 211 (791)
+...+ ..+++++|+|++|+...-. . +...+... ..++.+++||+|.... .........+++++|
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA--LPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 22222 5689999999998653311 1 11222221 3557999999997655 233344468999999
Q ss_pred ChHHHHHHHHHHhC
Q 038105 212 SDEDAWELFREKVG 225 (791)
Q Consensus 212 ~~~e~~~l~~~~~~ 225 (791)
++++..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 151 SEEDIKQYLRKYFS 164 (166)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999988753
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=4.7e-12 Score=131.10 Aligned_cols=193 Identities=27% Similarity=0.393 Sum_probs=147.4
Q ss_pred cEEEEcCCCcccCCCCcc--CccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCc
Q 038105 392 GFLVYAGSGLTEAPADVR--GWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~--~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
..+..++..+..+|..-. .+......+++.|++..+| ....+..|..+.++.|.+..++.. +.++..|.+||++.|
T Consensus 53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN 131 (722)
T ss_pred cccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc
Confidence 344455555666654332 3445566788888888887 456677888888888887666655 778888889999888
Q ss_pred cccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
.+..+|..++.|+ |+.|-+++|+++.+|..++.++.|.+|+.+.|.+ ..+|.. ++++.+|+.|++..|++..
T Consensus 132 -qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsq-l~~l~slr~l~vrRn~l~~---- 203 (722)
T KOG0532|consen 132 -QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQ-LGYLTSLRDLNVRRNHLED---- 203 (722)
T ss_pred -hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHH-hhhHHHHHHHHHhhhhhhh----
Confidence 7888888888877 8888888888888888888888889999988887 677766 6888888888888887544
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
+|.++..|+ |..||+++|.+..++ -.|.++++|++|-|.+|.+.
T Consensus 204 -------lp~El~~Lp-Li~lDfScNkis~iP----------------------------v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 204 -------LPEELCSLP-LIRLDFSCNKISYLP----------------------------VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -------CCHHHhCCc-eeeeecccCceeecc----------------------------hhhhhhhhheeeeeccCCCC
Confidence 677777665 888888888876543 34677888888888888876
Q ss_pred C
Q 038105 629 G 629 (791)
Q Consensus 629 ~ 629 (791)
.
T Consensus 248 S 248 (722)
T KOG0532|consen 248 S 248 (722)
T ss_pred C
Confidence 6
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.08 E-value=5.6e-09 Score=105.04 Aligned_cols=174 Identities=20% Similarity=0.218 Sum_probs=110.2
Q ss_pred cccccccCCCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHH
Q 038105 40 SWADERHTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEK 118 (791)
Q Consensus 40 ~~~~~~~~~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ 118 (791)
...++...+.+++|-...+.++++ .+....+.+|||+|+||||||+.++... ...|.. ++.. .+.++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~----~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sAv~~gvkd 88 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVE----AGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSAVTSGVKD 88 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHh----cCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----eccccccHHH
Confidence 445555667777777777666665 3478899999999999999999999876 444432 2111 12222
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHH-HHHhCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEE--EcCc
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDI-FKTLSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVF--TTRF 193 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iiv--TtR~ 193 (791)
+ .+.++.- .....+++.+|++|+|+.. .+-+.+ +|. ..+|..++| ||-+
T Consensus 89 l--------------------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~---vE~G~iilIGATTEN 142 (436)
T COG2256 89 L--------------------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPH---VENGTIILIGATTEN 142 (436)
T ss_pred H--------------------HHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhh---hcCCeEEEEeccCCC
Confidence 2 2222222 2223478999999999643 333333 444 455777777 6666
Q ss_pred HHH---HhhccccceEEeccCChHHHHHHHHHHhCccccCCC---C-ChHHHHHHHHHHcCCCch
Q 038105 194 VDV---CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESH---H-SIPELAQTVAKECDGLPL 251 (791)
Q Consensus 194 ~~~---~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~---~-~~~~~~~~i~~~~~g~Pl 251 (791)
+.. ....+...++++++|+.++..+++.+.+......-. . -.++..+-++..++|--.
T Consensus 143 PsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 143 PSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred CCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 644 122345678999999999999999995432221111 1 124567778888888654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.3e-10 Score=107.32 Aligned_cols=103 Identities=29% Similarity=0.445 Sum_probs=22.2
Q ss_pred cceeEEEcccCCCCCCCCCC-CCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccc-cCcccccEEec
Q 038105 412 EMVRRLSLMRNSIDNLPTVP-TCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLVSLQLLDI 489 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L~L 489 (791)
.+++.|+++++.|..+..+. .+.+|++|++++|.+..+.. +..+++|++|++++| .++.++..+ ..+++|++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEEC
Confidence 34455555555554444443 34455555555555444432 444455555555554 333333222 23444555555
Q ss_pred CCCcccccc--hhhhcCCCCceeeccCccc
Q 038105 490 SNTEVEELP--EELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 490 ~~~~l~~lp--~~~~~l~~L~~L~l~~~~~ 517 (791)
++|+|..+. ..+..+++|+.|++.+|++
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 555444221 2234444444444444443
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=1.3e-10 Score=122.60 Aligned_cols=164 Identities=26% Similarity=0.293 Sum_probs=112.2
Q ss_pred ccCccceeEEEcccCCCCCCC--------CCCCCCCccEEEecCCCCcccchhhhccCCc---ccEEeecCccccc----
Q 038105 408 VRGWEMVRRLSLMRNSIDNLP--------TVPTCPHLLTLFLNDNELTTITDDFFQSMPC---LTVLKMSDIRMLQ---- 472 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~l~--------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~---- 472 (791)
+...+++++++++++.+...+ .+..+++|+.|++++|.+....+..+..+.. |++|++++|+...
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 334456777888777665211 2456788999999988876555544554544 9999998884331
Q ss_pred cccccccCc-ccccEEecCCCccc-----ccchhhhcCCCCceeeccCcccccc----cchhHhhcCcCCCeeeeeecCc
Q 038105 473 QLPMGISKL-VSLQLLDISNTEVE-----ELPEELKALVNLKCLNLDWTDVLVE----VPQQLLSNFSRLRVLRMFATGI 542 (791)
Q Consensus 473 ~lp~~~~~l-~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~ 542 (791)
.+...+..+ ++|+.|++++|.++ .++..+..+++|++|++++|.+.+. ++.. +..+++|++|++++|.+
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCcc
Confidence 233345566 88999999999877 3455577778899999998877432 2222 35567899999998886
Q ss_pred cccccccccchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 543 RSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 543 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
+.. ....+...+..+++|+.|++++|.+..
T Consensus 206 ~~~------~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 206 TDE------GASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred ChH------HHHHHHHHhcccCCCCEEecCCCcCch
Confidence 542 112355667788899999999887754
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.04 E-value=1.6e-08 Score=111.70 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=124.8
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCC--CCC--CEEEEEEeCCccCHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--TDF--DYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--~~f--~~~~wv~~~~~~~~~~~ 119 (791)
|..++|||+|+++|...|.. .+...++.|+|+.|.|||++++.|.+.+.... ... -.+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 57899999999999998865 22346788999999999999999988763211 111 24678888877788899
Q ss_pred HHHHHHHhCCCCCCcccccHHHHHHHHHHHhC---CceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEE--EcC
Q 038105 120 QETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS---KKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVF--TTR 192 (791)
Q Consensus 120 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iiv--TtR 192 (791)
+..|++++....+. ......+....++..+. ....+||||+++.... -+.+...+... ...+++|+| ++.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~~s~SKLiLIGISN 910 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--hccCCeEEEEEecC
Confidence 99999888433211 22334456666666552 2346999999975421 11111111110 122344443 443
Q ss_pred cHHH--------HhhccccceEEeccCChHHHHHHHHHHhCccc-cCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 193 FVDV--------CGRMEDRRMFKVACLSDEDAWELFREKVGEET-IESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 193 ~~~~--------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
+... ...+. ...+.+.|++.+|..+++.+++.... .-.+..++-.|+.++...|..-.||.++-.+.
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2111 11121 23477899999999999999986421 11111222233333333344556666555444
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.2e-10 Score=103.88 Aligned_cols=142 Identities=27% Similarity=0.374 Sum_probs=53.6
Q ss_pred cccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhc-cCCcccEEeecCccccccccccccCcccccEEecCCCccccc
Q 038105 419 LMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQ-SMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEEL 497 (791)
Q Consensus 419 l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~l 497 (791)
+..+.++..+...++.+++.|++.+|.+..+.. ++ .+.+|+.|++++| .+..++ .+..+++|++|++++|+|+.+
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp --------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-
T ss_pred ccccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcc
Confidence 444566667777778889999999999887653 44 5789999999999 677775 688899999999999999988
Q ss_pred chhh-hcCCCCceeeccCcccccccch-hHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEE
Q 038105 498 PEEL-KALVNLKCLNLDWTDVLVEVPQ-QLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEIT 572 (791)
Q Consensus 498 p~~~-~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 572 (791)
+..+ ..+++|++|++++|++ ..+.. ..+..+++|++|++.+|.++.... .-...+..+++|+.||-.
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~-------YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCEKKN-------YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT-------HHHHHHHH-TT-SEETTE
T ss_pred ccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccchhh-------HHHHHHHHcChhheeCCE
Confidence 7665 4789999999999986 33321 226789999999999998765321 223456678888888753
No 41
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=2.9e-08 Score=109.47 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=115.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC------------------CCCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 110 (791)
.++||.+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++.+--.. +.|..+++++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 458999999999999998874456778999999999999999988762100 01111222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH----hCCceEEEEEcCccCccc--ccccccCCCCCCCCCCC
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT----LSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKN 184 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ 184 (791)
... ...++..+.+... ..++.-++|||+++.... +..+...+.. ...+
T Consensus 96 as~-----------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE---PP~~ 149 (830)
T PRK07003 96 ASN-----------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE---PPPH 149 (830)
T ss_pred ccc-----------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh---cCCC
Confidence 211 1122222222111 123445888999987643 4555444444 4456
Q ss_pred cEEEEEcCcHHHH--hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHHH
Q 038105 185 SAVVFTTRFVDVC--GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIGR 258 (791)
Q Consensus 185 ~~iivTtR~~~~~--~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 258 (791)
.++|++|++..-. ...+....+.+.+++.++..+.+.+.+...++..+ .+....|++.++|... ++..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7788877764332 11233467999999999999999998876553322 6778889999999663 5554433
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.3e-10 Score=109.32 Aligned_cols=133 Identities=21% Similarity=0.273 Sum_probs=110.4
Q ss_pred ccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCe
Q 038105 455 QSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRV 534 (791)
Q Consensus 455 ~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~ 534 (791)
.....|..|||++| .+..+.+++.-+|.++.|++++|.+..+.. +..+++|++||+++|.+ ..+... -.++.++++
T Consensus 281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L-s~~~Gw-h~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL-AECVGW-HLKLGNIKT 356 (490)
T ss_pred chHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchh-Hhhhhh-HhhhcCEee
Confidence 34578899999999 788888888889999999999999987764 88999999999999976 555433 468889999
Q ss_pred eeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccc
Q 038105 535 LRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANL 614 (791)
Q Consensus 535 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l 614 (791)
|.+++|.+..+ ..+..+-+|..|+++.|++..+++ ...++++
T Consensus 357 L~La~N~iE~L------------SGL~KLYSLvnLDl~~N~Ie~lde--------------------------V~~IG~L 398 (490)
T KOG1259|consen 357 LKLAQNKIETL------------SGLRKLYSLVNLDLSSNQIEELDE--------------------------VNHIGNL 398 (490)
T ss_pred eehhhhhHhhh------------hhhHhhhhheeccccccchhhHHH--------------------------hcccccc
Confidence 99999986553 457778889999999999887654 3468899
Q ss_pred cccceEEecccCCCC
Q 038105 615 EQLNTLYFRSCGWSG 629 (791)
Q Consensus 615 ~~L~~L~l~~~~~~~ 629 (791)
+.|+++.|.+|.+.+
T Consensus 399 PCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 399 PCLETLRLTGNPLAG 413 (490)
T ss_pred cHHHHHhhcCCCccc
Confidence 999999999998876
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=1.1e-08 Score=101.08 Aligned_cols=156 Identities=17% Similarity=0.236 Sum_probs=97.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
..+.+.|+|+.|+|||+|++++++... .....+.|+++.... .. ...+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~-----------------------~~~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YF-----------------------SPAVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hh-----------------------hHHHHhh
Confidence 456889999999999999999999872 223456777753110 00 0011122
Q ss_pred hCCceEEEEEcCccCc---cccc-ccccCCCCCCCCCCCcEEE-EEcCc---------HHHHhhccccceEEeccCChHH
Q 038105 150 LSKKKFALLLDDLWER---VDLK-KVGVPLPSRSNSPKNSAVV-FTTRF---------VDVCGRMEDRRMFKVACLSDED 215 (791)
Q Consensus 150 l~~~~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~~~~~ii-vTtR~---------~~~~~~~~~~~~~~l~~l~~~e 215 (791)
+. +.-+|||||++.. ..|+ .+...+... ...+..+| +|++. +.+...+....+++++++++++
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~--~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~ 165 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRI--KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQ 165 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHH--HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHH
Confidence 22 2358999999864 2232 222222221 12345554 45543 2344445556789999999999
Q ss_pred HHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 216 AWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
.++++.+.+.......+ ++..+-|++.+.|....+..+-..+
T Consensus 166 ~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 166 KIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999998876554333 6788889999988876665554433
No 44
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-07 Score=99.19 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=119.1
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
|+.+.+||.+++++...|.. ++.+.-+.|+|..|+|||+.++.+++++........ ++++++....+..+++..|+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 45599999999999998865 334445999999999999999999999843333333 89999999999999999999
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCcccc--cccccCCCCCCCCCCCcEEEE--EcCcHHHH-
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVDL--KKVGVPLPSRSNSPKNSAVVF--TTRFVDVC- 197 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~--~~~~~~l~~~~~~~~~~~iiv--TtR~~~~~- 197 (791)
++++... .......+..+.+.+.+. ++.+++|||+++....- +.+...+... ....++|++ .+-+....
T Consensus 95 ~~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~--~~~~~~v~vi~i~n~~~~~~ 170 (366)
T COG1474 95 NKLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP--GENKVKVSIIAVSNDDKFLD 170 (366)
T ss_pred HHcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc--cccceeEEEEEEeccHHHHH
Confidence 9996211 123455666777777774 57899999999765333 2222222221 111344333 33333222
Q ss_pred -------hhccccceEEeccCChHHHHHHHHHHhC
Q 038105 198 -------GRMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 198 -------~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
..... ..+.+.|.+.+|-.+++..++.
T Consensus 171 ~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 171 YLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred HhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 22223 3488999999999999999874
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.88 E-value=1.4e-08 Score=101.02 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC
Q 038105 54 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS 133 (791)
Q Consensus 54 R~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 133 (791)
.+..++++.+++... ..+.|.|+|+.|+|||++|+.+++... ......+++++..-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~---------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD---------- 81 (226)
T ss_pred cHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH----------
Confidence 556777777776543 568999999999999999999998762 2233456666533211 00
Q ss_pred cccccHHHHHHHHHHHhCCceEEEEEcCccCccc----ccccccCCCCCCCCCCCcEEEEEcCcHH---------HHhhc
Q 038105 134 WKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----LKKVGVPLPSRSNSPKNSAVVFTTRFVD---------VCGRM 200 (791)
Q Consensus 134 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~~~iivTtR~~~---------~~~~~ 200 (791)
..+...+.+. -+|||||++.... .+.+...+... ...+..+|+|++... .....
T Consensus 82 ----------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~--~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 ----------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRV--REAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ----------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHH--HHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 0111222232 3899999975432 22232222210 122357888887432 11222
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRA 259 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 259 (791)
.....+++.++++++...++.+.+....... .++..+.+++.+.|+|..+..+...
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 2346799999999999999987654333222 2567788888899999877666543
No 46
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=9e-08 Score=104.52 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=113.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC------------------CCCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 110 (791)
.++||.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++.+--.. +.+.-++.++.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 458999999999999998774467889999999999999999988761000 01111222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH-----hCCceEEEEEcCccCcc--cccccccCCCCCCCCCC
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-----LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPK 183 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~ 183 (791)
+... ..++..+ +... ..++.-++|||+++... ....+...+.. ...
T Consensus 95 As~~-----------------------~VddIRe-li~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE---PP~ 147 (702)
T PRK14960 95 ASRT-----------------------KVEDTRE-LLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE---PPE 147 (702)
T ss_pred cccC-----------------------CHHHHHH-HHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc---CCC
Confidence 1111 1222222 1111 12455689999998653 34445444544 445
Q ss_pred CcEEEEEcCcHHH-H-hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHH
Q 038105 184 NSAVVFTTRFVDV-C-GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALI 254 (791)
Q Consensus 184 ~~~iivTtR~~~~-~-~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 254 (791)
+.++|++|.+..- . ...+....+++.+++.++..+.+.+.+...+.... .+....|++.++|.+..+.
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 6677777765432 1 11244568999999999999999988866553222 6678889999999875433
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.9e-10 Score=119.45 Aligned_cols=142 Identities=25% Similarity=0.402 Sum_probs=107.0
Q ss_pred CCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc
Q 038105 398 GSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG 477 (791)
Q Consensus 398 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~ 477 (791)
.+.+..+|..+.++..+++++++.|.+..+|.-.+.--|++|.+++|.++.++.+ ++....|..||.+.| .+..+|+.
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsq 184 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQ 184 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc-cccchhHHHhhhhhh-hhhhchHH
Confidence 4456677777777778888888888887777655556678888888887777766 567777888888887 67777777
Q ss_pred ccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 478 ISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 478 ~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
++.+.+|+.|+++.|++..+|+++. .-.|..||+++|++ ..+|.. |.+|+.|++|-+.+|-+++
T Consensus 185 l~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNki-s~iPv~-fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKI-SYLPVD-FRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCce-eecchh-hhhhhhheeeeeccCCCCC
Confidence 8888888888888888878887776 44677888887765 777776 6788888888888777655
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=5.3e-10 Score=112.71 Aligned_cols=191 Identities=14% Similarity=0.138 Sum_probs=132.0
Q ss_pred CccCccceeEEEcccCCCCCCC---CCCCCCCccEEEecCCCCcccc--hhhhccCCcccEEeecCcccccccccc--cc
Q 038105 407 DVRGWEMVRRLSLMRNSIDNLP---TVPTCPHLLTLFLNDNELTTIT--DDFFQSMPCLTVLKMSDIRMLQQLPMG--IS 479 (791)
Q Consensus 407 ~~~~~~~l~~l~l~~~~~~~l~---~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~lp~~--~~ 479 (791)
.-.++++|+.+.+.++.....+ ....|++++.|++++|-+.... ..+...+|+|+.|+++.| .+...-++ -.
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence 3446678888999888887766 4678999999999999865443 245678999999999998 34332222 34
Q ss_pred CcccccEEecCCCccc--ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchH
Q 038105 480 KLVSLQLLDISNTEVE--ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVA 557 (791)
Q Consensus 480 ~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 557 (791)
.+++|+.|.|++|.++ .+-.....+|+|..|++..|......... ..-++.|++|++++|.+-... ..
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~---------~~ 264 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFD---------QG 264 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccc---------cc
Confidence 5789999999999887 44445667899999999988532221111 356888999999998865421 22
Q ss_pred HHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 558 EELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 558 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
...+.++.|+.|+++.+++..+..... +. ......+++|++|++..|++..
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~----------------~s-----~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDV----------------ES-----LDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCc----------------cc-----hhhhcccccceeeecccCcccc
Confidence 456778888888888887765431100 00 0112346788888888887754
No 49
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.3e-07 Score=100.40 Aligned_cols=189 Identities=17% Similarity=0.208 Sum_probs=109.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.+++|.+..++.+...+..+.-.+.+.++|+.|+||||+|+.+++.+-- ....... .+..- .....+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c-~~~~~~~---pc~~c----~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC-QNGITSN---PCRKC----IICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCCCC----HHHHHHhcCCC
Confidence 5689999999999999987644567899999999999999999987620 0000000 00000 00001100000
Q ss_pred CCC---CCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcHH-HH
Q 038105 129 LYT---DSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFVD-VC 197 (791)
Q Consensus 129 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~ 197 (791)
... +.......++ .+.+.+.+ .+++-++|+|+++.... ++.+...+.. .+...++|++|.+.. +.
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe---~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE---PPQHIKFILATTDVEKIP 163 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc---CCCCeEEEEEcCChHhhh
Confidence 000 0000011122 22222222 23456999999987643 4445444444 445666777665432 22
Q ss_pred hh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 198 GR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 198 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
.. .+....+++.+++.++..+.+.+.+...+... .++.+..|++.++|.|..
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 22 22346799999999999999988775544222 256778899999998853
No 50
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=7.1e-08 Score=104.29 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=105.1
Q ss_pred CcccchHHHHHH---HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQ---VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 49 ~~~vGR~~~~~~---l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
.+|||++..+.+ +.+++..+ ..+.+.|+|++|+||||+|+.+++.. ...| +.++.... +...+
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~---~~l~a~~~-~~~~i------ 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGAT---DAPF---EALSAVTS-GVKDL------ 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHh---CCCE---EEEecccc-cHHHH------
Confidence 458888888666 77777665 66788999999999999999999876 2222 22222111 11111
Q ss_pred HhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEE--EcCcHHHH---
Q 038105 126 KIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVF--TTRFVDVC--- 197 (791)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iiv--TtR~~~~~--- 197 (791)
.+..+..... ..+++.+++||+++... +.+.+...+.. +..+++ ||.++...
T Consensus 78 --------------r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~------~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 --------------REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED------GTITLIGATTENPSFEVNP 137 (413)
T ss_pred --------------HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc------CcEEEEEeCCCChhhhccH
Confidence 1111111111 14577899999998652 23333333322 344444 34443221
Q ss_pred hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 038105 198 GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGR 258 (791)
Q Consensus 198 ~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 258 (791)
...+....+++.+++.++..+++.+.+.........-.++..+.+++.++|.+..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 1122346799999999999999998764321000122356788899999999976554443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=5.9e-09 Score=113.25 Aligned_cols=182 Identities=26% Similarity=0.397 Sum_probs=117.6
Q ss_pred CCccCccceeEEEcccCCCCCCCCCCCCC--CccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCccc
Q 038105 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCP--HLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVS 483 (791)
Q Consensus 406 ~~~~~~~~l~~l~l~~~~~~~l~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~ 483 (791)
..+...+.++.+++.++.+..++...... +|+.|++++|.+..++.. +..+++|+.|++++| .+..+|...+.++.
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~ 187 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSN 187 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhh
Confidence 33444456777777777777776554443 677777777776666422 566777777777777 56666666556777
Q ss_pred ccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCC
Q 038105 484 LQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGL 563 (791)
Q Consensus 484 L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l 563 (791)
|+.|++++|++..+|..+..+..|..|.+++|.. ...+.. +.++.++..+.+.++.+.. ++..++.+
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~-----------~~~~~~~l 254 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLED-----------LPESIGNL 254 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeee-----------ccchhccc
Confidence 7777777777777776666666677777777743 233332 5667777777766665332 24556666
Q ss_pred CCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCce
Q 038105 564 KHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGL 631 (791)
Q Consensus 564 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 631 (791)
.+++.|++++|.+.... .++++.+|+.|+++++.+....
T Consensus 255 ~~l~~L~~s~n~i~~i~-----------------------------~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 255 SNLETLDLSNNQISSIS-----------------------------SLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccceeccccccccccc-----------------------------cccccCccCEEeccCccccccc
Confidence 77777777777665422 2566777888888877766543
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=9.6e-08 Score=107.59 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=111.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-------------------CCEEEEEE
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-------------------FDYVIWVV 109 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~-------------------f~~~~wv~ 109 (791)
..+||.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++.+-- ... |..+++++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc-e~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC-EQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC-ccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 4689999999999999987633455689999999999999999988721 111 11112222
Q ss_pred eCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH-HhCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcE
Q 038105 110 VSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK-TLSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSA 186 (791)
Q Consensus 110 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~ 186 (791)
......+.. ..++++.+.. -..++.-++|||+++.+ .....+...+.. .....+
T Consensus 95 Aas~~kVDd--------------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE---PP~~vr 151 (944)
T PRK14949 95 AASRTKVDD--------------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE---PPEHVK 151 (944)
T ss_pred cccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc---cCCCeE
Confidence 111111111 1111111111 11356679999999865 334555444544 344566
Q ss_pred EEEEcCcH-HHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 187 VVFTTRFV-DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 187 iivTtR~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+|++|.+. .+... ......+++.+++.++..+++.+.+...+.. ...+.+..|++.++|.|.-+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 66655543 33221 2334689999999999999999877554322 22567889999999988644333
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.3e-07 Score=103.00 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=111.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-CCEEEEEEeCCccCHHHHHHHHHHH-
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQETIGKK- 126 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~- 126 (791)
.++||-+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++.+--.... -.....-.+..- .....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C----~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC----RACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc----HHHHHHHcCC
Confidence 45899999999999999887445677999999999999999998876210000 000000000000 000011000
Q ss_pred ----hCCCCCCcccccHHHHHHHHHHH----hCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCc-HH
Q 038105 127 ----IGLYTDSWKDKRLEEKAQDIFKT----LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRF-VD 195 (791)
Q Consensus 127 ----l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~-~~ 195 (791)
+.+... .....++..+.+... ..++.-++|||+++.+. ....+...+.. ...+.++|++|.+ ..
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE---PP~~v~FILaTtep~k 166 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE---PPEHVKFILATTDPQK 166 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc---CCCCceEEEEeCChHh
Confidence 000000 111233332222221 13455689999998663 34455444544 3445565555543 33
Q ss_pred HHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 196 VCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 196 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+... .+....+.+..++.++..+.+.+.+...+... ..+..+.|++.++|.|.-...
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3222 23346799999999999999988876544222 245678899999999864433
No 54
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.77 E-value=1.9e-07 Score=92.22 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=97.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHH
Q 038105 68 EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIF 147 (791)
Q Consensus 68 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 147 (791)
.++.+.+.+||++|+||||||+.++..- +.+ .+.||..+....-..-.+.|.++- +. .
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~ts---k~~--SyrfvelSAt~a~t~dvR~ife~a----------------q~-~ 216 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTS---KKH--SYRFVELSATNAKTNDVRDIFEQA----------------QN-E 216 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhc---CCC--ceEEEEEeccccchHHHHHHHHHH----------------HH-H
Confidence 3488999999999999999999998875 222 255666654432222222222221 11 1
Q ss_pred HHhCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEE--EcCcHHH---HhhccccceEEeccCChHHHHHHH
Q 038105 148 KTLSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVF--TTRFVDV---CGRMEDRRMFKVACLSDEDAWELF 220 (791)
Q Consensus 148 ~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iiv--TtR~~~~---~~~~~~~~~~~l~~l~~~e~~~l~ 220 (791)
..+..++.+|++|+|..- .+-+. ++|. ..+|..++| ||.+++. ........++.+++|..++...++
T Consensus 217 ~~l~krkTilFiDEiHRFNksQQD~---fLP~---VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL 290 (554)
T KOG2028|consen 217 KSLTKRKTILFIDEIHRFNKSQQDT---FLPH---VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTIL 290 (554)
T ss_pred HhhhcceeEEEeHHhhhhhhhhhhc---ccce---eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHH
Confidence 224678899999999643 22222 3565 566777776 7776654 223355678999999999999999
Q ss_pred HHHhCc---c---ccCCCC----ChHHHHHHHHHHcCCCch
Q 038105 221 REKVGE---E---TIESHH----SIPELAQTVAKECDGLPL 251 (791)
Q Consensus 221 ~~~~~~---~---~~~~~~----~~~~~~~~i~~~~~g~Pl 251 (791)
.+.... . ....+. -...+.+-++..|+|-..
T Consensus 291 ~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 291 MRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 885431 1 101111 224466778888888653
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.77 E-value=5.6e-07 Score=99.41 Aligned_cols=177 Identities=19% Similarity=0.218 Sum_probs=110.7
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
-.+++|++..++++.+|+.. +...+.+.|+|+.|+||||+|+.+++.+ .++ ++-++++...+...+ ..++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~i-~~~i 85 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADVI-ERVA 85 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHHH-HHHH
Confidence 34589999999999999874 2236899999999999999999999987 233 334454443332222 2222
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc------ccccccCCCCCCCCCCCcEEEEEcCcHHH-H
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD------LKKVGVPLPSRSNSPKNSAVVFTTRFVDV-C 197 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~~~iivTtR~~~~-~ 197 (791)
....... .....++-+||||+++.... ...+...+.. .+..+|+|+.+..- .
T Consensus 86 ~~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-----~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 86 GEAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-----AKQPIILTANDPYDPS 144 (482)
T ss_pred HHhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-----CCCCEEEeccCccccc
Confidence 2211100 01113578999999986532 2333333322 22345555543211 1
Q ss_pred --hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 198 --GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 198 --~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
........+++.+++.++....+.+.+...+...+ .+....|++.++|....+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 11123467999999999999999988765553333 67789999999997654443
No 56
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.75 E-value=9.6e-08 Score=94.59 Aligned_cols=175 Identities=16% Similarity=0.123 Sum_probs=104.2
Q ss_pred CcccchHH-HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQS-QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~-~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++|... .+..+.++.... ..+.+.|+|+.|+|||+|++++++... .....+.|+++.....
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh------------
Confidence 34456434 344444443333 457899999999999999999998762 2234667777632100
Q ss_pred CCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc---ccccc-cccCCCCCCCCCCC-cEEEEEcCcHH-------
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER---VDLKK-VGVPLPSRSNSPKN-SAVVFTTRFVD------- 195 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~~~-~~iivTtR~~~------- 195 (791)
...+..+.+ .+ .-+++|||++.. ..|+. +...+... ...| .++|+||+.+.
T Consensus 87 ----------~~~~~~~~~----~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~--~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 87 ----------FVPEVLEGM----EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRI--LESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred ----------hhHHHHHHh----hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHH--HHcCCCeEEEeCCCChHHcCccc
Confidence 001111111 11 147899999653 22221 11122110 1123 47888887542
Q ss_pred --HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHH
Q 038105 196 --VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRA 259 (791)
Q Consensus 196 --~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 259 (791)
...++....+++++++++++-.+++.+++...+...+ ++..+-+++.+.|....+..+-..
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 2334455678999999999999999887755443333 678888888888877655544433
No 57
>PTZ00202 tuzin; Provisional
Probab=98.74 E-value=1.2e-06 Score=90.08 Aligned_cols=164 Identities=17% Similarity=0.160 Sum_probs=100.8
Q ss_pred ccCCCcccchHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 45 RHTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 45 ~~~~~~~vGR~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
++..+.|+||++++.++...|.+. +..+++.|+|++|+|||||++.+.... . ...++++.. +..+++..
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l---~---~~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE---G---MPAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC---C---ceEEEECCC---CHHHHHHH
Confidence 445788999999999999999752 245699999999999999999999765 1 223344433 67999999
Q ss_pred HHHHhCCCCCCcccccHHHHHHHHHHHh-----C-CceEEEEEcCccCccccccc---ccCCCCCCCCCCCcEEEEEcCc
Q 038105 123 IGKKIGLYTDSWKDKRLEEKAQDIFKTL-----S-KKKFALLLDDLWERVDLKKV---GVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 123 i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlDdv~~~~~~~~~---~~~l~~~~~~~~~~~iivTtR~ 193 (791)
++..||.+... ...++.+.|.+.+ . +++.+||+-== +...+..+ ...+.. ...-++|++----
T Consensus 329 LL~ALGV~p~~----~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~---drr~ch~v~evpl 400 (550)
T PTZ00202 329 VVKALGVPNVE----ACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALAC---DRRLCHVVIEVPL 400 (550)
T ss_pred HHHHcCCCCcc----cHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHc---cchhheeeeeehH
Confidence 99999984322 2223333333333 2 45555554322 11222211 111222 2334556654332
Q ss_pred HHH--Hh-hccccceEEeccCChHHHHHHHHHHhC
Q 038105 194 VDV--CG-RMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 194 ~~~--~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
++. +. ....-..|-+.+|+.++|.++..+...
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~d 435 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAID 435 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhccc
Confidence 211 11 112234688999999999999887753
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.5e-07 Score=101.12 Aligned_cols=192 Identities=19% Similarity=0.146 Sum_probs=111.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.+++|-+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++.+. ..+.+...||.+.+... +......-...+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~ 91 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESCLA-VRRGAHPDVLEID 91 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhhHH-HhcCCCCceEEec
Confidence 458999999999999988774456679999999999999999998872 11112223333221100 0000000000000
Q ss_pred CCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-HHHhh-
Q 038105 129 LYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCGR- 199 (791)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~~- 199 (791)
.. .....++ ++.+.+.+ .+++-++|||+++... .+..+...+.. ....+.+|+++... .+...
T Consensus 92 --~~--~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 92 --AA--SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE---PPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred --cc--ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh---CCCCEEEEEEcCChhhCChHH
Confidence 00 0111222 22222222 2455689999997553 34445444443 33455556555433 22221
Q ss_pred ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 200 MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 200 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
......+++.+++.++..+.+.+.+...+... .++.+..|++.++|.+.-+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 23346899999999999999999886555322 2567889999999998544
No 59
>PRK08727 hypothetical protein; Validated
Probab=98.73 E-value=1.4e-07 Score=93.24 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=99.6
Q ss_pred ccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 038105 51 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 130 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 130 (791)
++|-...+..+.....+. ....+.|+|+.|+|||+|+.++++... .....+.|+++.. ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------ 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQ-SSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------ 85 (233)
T ss_pred cCCcHHHHHHHHHHHhcc-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH------
Confidence 344444444444433332 446799999999999999999988862 2234566776422 111110
Q ss_pred CCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc---cc-ccccCCCCCCCCCCCcEEEEEcCcHHH---------H
Q 038105 131 TDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD---LK-KVGVPLPSRSNSPKNSAVVFTTRFVDV---------C 197 (791)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~-~~~~~l~~~~~~~~~~~iivTtR~~~~---------~ 197 (791)
...+.+. +.-+||+||++.... ++ .+...+... ...+..||+|++.... .
T Consensus 86 --------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~--~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 --------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRA--RAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred --------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHH--HHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1111222 235899999974421 11 121222110 1235679999984322 2
Q ss_pred hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 198 GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 198 ~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
.++.....+++++++.++..+++.+++...+...+ ++....+++.++|-...+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 23334568999999999999999997765443333 677888888888766544
No 60
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.71 E-value=2.6e-07 Score=98.12 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=111.6
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHH--
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGK-- 125 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~-- 125 (791)
..++|++..++.+.+++..+ ..+.+.++|+.|+||||+|+.+++... ...+. ..++++++... ......+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~--~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFF--DQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhh--hcchhhhhcCc
Confidence 56899999999999998876 556788999999999999999998862 12222 23455543211 000000000
Q ss_pred ----HhCCCCCCcccccHHHHHHHHH----HHh--CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCc
Q 038105 126 ----KIGLYTDSWKDKRLEEKAQDIF----KTL--SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 126 ----~l~~~~~~~~~~~~~~~~~~l~----~~l--~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
.++.. .. ......+..+.+. ... ...+-++|+||++.... ...+...+.. ....+++|+|+..
T Consensus 90 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~---~~~~~~~Il~~~~ 164 (337)
T PRK12402 90 RFAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ---YSRTCRFIIATRQ 164 (337)
T ss_pred chhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh---ccCCCeEEEEeCC
Confidence 00000 00 0000111222222 111 12345899999975532 2233333332 3345677777654
Q ss_pred HH-HHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 194 VD-VCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 194 ~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+. +... ......+++.+++.++..+++.+.+...+... ..+.++.+++.++|.+..+..
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 32 2121 12345789999999999999998876554332 267788899999998755433
No 61
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=2.7e-07 Score=96.26 Aligned_cols=198 Identities=12% Similarity=0.101 Sum_probs=113.3
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
-..++|.++..+.+...+..+...+.+.|+|+.|+||||+|+.++..+-.... .+.... .............+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHHHcC
Confidence 45689999999999999998745667999999999999999999988621100 011100 00000011122222221
Q ss_pred -------hCCCCCC----c-ccccHHHHHHHHHHHhC-----CceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEE
Q 038105 127 -------IGLYTDS----W-KDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAV 187 (791)
Q Consensus 127 -------l~~~~~~----~-~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~i 187 (791)
+..+.+. . .....++. ..+.+++. ++.-++|+|+++.+.. ...+...+.. ...+..+
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE---pp~~~~f 174 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE---PPARALF 174 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc---CCCCceE
Confidence 0000000 0 11123333 34555543 3556899999986532 3334444433 2334444
Q ss_pred EEEcCcH-HHHh-hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 188 VFTTRFV-DVCG-RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 188 ivTtR~~-~~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
|++|..+ .+.. ..+....+++.+++.++..+++.+...... ..++.+..+++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444333 2221 112345899999999999999988432111 124557889999999997554433
No 62
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=5.9e-07 Score=93.58 Aligned_cols=177 Identities=14% Similarity=0.209 Sum_probs=113.4
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccC---CCCCCCEEEEEEe-CCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD---NPTDFDYVIWVVV-SKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~i~ 124 (791)
.+++|-+..++.+.+.+..+.-.+...++|+.|+||||+|+.++..+-- ...+.+...|... +.....+++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 3578999999999999987745677889999999999999999986521 1234444444331 1222222221 122
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcHHHH-h-hc
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC-G-RM 200 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~-~-~~ 200 (791)
+.+... -..+++=++|+|+++.+ .....+...+.. .+.++.+|++|.+.+.. . -.
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe---pp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE---PPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcC---CCCCeEEEEEeCChHhCcHHHH
Confidence 222110 01234556777777654 345566666666 66788888888765332 1 12
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALI 254 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 254 (791)
+....+++.++++++..+.+.+.+.... ++.++.++..++|.|.-+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHH
Confidence 3346899999999999998877653211 4557788999999986543
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=98.69 E-value=2.1e-07 Score=97.12 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=107.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
.+++|.+..++.|.+++..+ ..+.+.++|+.|+||||+|+.+++.+. ...|. .++-++.+...+...+. ++...+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~~vr-~~i~~~ 88 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGIDVVR-NKIKMF 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHHHHH-HHHHHH
Confidence 45899999999998887765 556688999999999999999998862 12222 22222332222222111 111111
Q ss_pred CCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcH-HHHh-hcccc
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCG-RMEDR 203 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~-~~~~~ 203 (791)
..... ....++.-++|||+++.... ...+...+.. .+..+++++++... .+.. ..+..
T Consensus 89 ~~~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~---~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 89 AQKKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI---YSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred Hhccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc---ccCCceEEEEeCCccccchhHHHhh
Confidence 00000 00023467899999986632 2223222322 33456677766432 2211 11233
Q ss_pred ceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 204 RMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 204 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
..+++.++++++..+.+.+.+...+..-+ ++....+++.++|....
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 57999999999999999988866553333 56788899999987643
No 64
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=2.6e-07 Score=98.21 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=110.4
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.++||-+..+..|..++..+.-.+.+.++|+.|+||||+|+.+++.+- +..... ...+..-.+...+.......+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~sC~~i~~g~~~dvi 93 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTSCLEITKGISSDVL 93 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcHHHHHHccCCccce
Confidence 458999999999999998873345689999999999999999998862 111100 0011111111111111100000
Q ss_pred -CCCCCcccccHHH---HHHHHHHH-hCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCc-HHHHhh-
Q 038105 129 -LYTDSWKDKRLEE---KAQDIFKT-LSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRF-VDVCGR- 199 (791)
Q Consensus 129 -~~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~-~~~~~~- 199 (791)
+... .....++ ..+.+... ..++.-++|||+++.. ..+..+...+.. ......+|++|.. ..+...
T Consensus 94 EIdaa--s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE---Pp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 94 EIDAA--SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE---PPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred eechh--hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc---CCCceEEEeecCChhhccHHH
Confidence 0000 0111222 22222211 2345679999999865 335555444433 3344555555543 333222
Q ss_pred ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 200 MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 200 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
.+....|.+.+++.++..+.+.+.+...+... .++....|++.++|.+.
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHH
Confidence 23345799999999999999998876544322 26778899999999985
No 65
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.68 E-value=7.1e-07 Score=95.45 Aligned_cols=183 Identities=15% Similarity=0.168 Sum_probs=111.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC-CCC-----------------CEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDF-----------------DYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~~f-----------------~~~~wv~~ 110 (791)
..++|.+..++.+.+++..+.-.+.+.++|+.|+||||+|+.++..+.... ..+ ..+++++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~ 93 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDA 93 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeec
Confidence 457999999999999998764456788999999999999999988762110 011 11223322
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEE
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAV 187 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~i 187 (791)
....+... .+++ .+.+... ..+++-++|+|+++.. .....+...+.. ....+.+
T Consensus 94 ~~~~~~~~-~~~l-------------------~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~---~~~~~~l 150 (355)
T TIGR02397 94 ASNNGVDD-IREI-------------------LDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE---PPEHVVF 150 (355)
T ss_pred cccCCHHH-HHHH-------------------HHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC---CccceeE
Confidence 21111111 1111 1111100 1234458899999755 223444444433 3445666
Q ss_pred EEEcCcHH-HHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 188 VFTTRFVD-VCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 188 ivTtR~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
|++|.+.. +... ......+++.++++++..+++..++...+...+ ++.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 66665443 2221 223457899999999999999987765443222 5778889999999986554443
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5.5e-07 Score=98.57 Aligned_cols=185 Identities=18% Similarity=0.164 Sum_probs=113.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC------------------CCCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 110 (791)
.++||-+..++.+...+..+...+.+.++|+.|+||||+|+.+++.+--.. +.|..+++++.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 458999999999999998764456688999999999999999998652100 01222233332
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEE
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAV 187 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~i 187 (791)
....+.++ ..+..+.+... ..+++-++|+|+++... ..+.+...+.. .+..+++
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe---pp~~v~f 152 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE---PPEYVKF 152 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc---CCCCceE
Confidence 22211111 11122222111 23456699999997653 34455555544 4445656
Q ss_pred EEEcCc-HHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHHHH
Q 038105 188 VFTTRF-VDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIGRA 259 (791)
Q Consensus 188 ivTtR~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 259 (791)
|++|.+ ..+... .+....+++.+++.++..+.+.+.+...+... .++....|++.++|.+. |+..+-.+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 654443 333322 33456899999999999988888765544222 25677889999999764 55554433
No 67
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=2.9e-07 Score=101.66 Aligned_cols=193 Identities=12% Similarity=0.134 Sum_probs=109.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH-HHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET-IGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~-i~~~l 127 (791)
.++||.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++..+- ...... +..+........+... ...-+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~---~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQH---GEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCC---CCCCcccHHHHHHhccCccceE
Confidence 458999999999999999874456789999999999999999988751 110000 0000000000000000 00000
Q ss_pred CCCCCCcccccHHHHHHHHHHH-----hCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcHH-HHh-
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKT-----LSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCG- 198 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~- 198 (791)
.+... .....++... +.+. ..+++-++|||+++.... ...+...+.. ....+++|++|.+.. +..
T Consensus 92 EidaA--s~~gVd~IRe-lle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE---Pp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 92 EIDAA--SNTGIDNIRE-VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE---PPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred EEecc--ccCCHHHHHH-HHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh---CCCCcEEEEEeCCccccchH
Confidence 00000 0111222211 2111 124556899999976532 3334444433 334566777665432 211
Q ss_pred hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHH
Q 038105 199 RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALI 254 (791)
Q Consensus 199 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 254 (791)
..+....+.+.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+.-+.
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHH
Confidence 1123356888999999999999988876553222 5678899999999885433
No 68
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.66 E-value=6.7e-07 Score=94.15 Aligned_cols=176 Identities=15% Similarity=0.187 Sum_probs=106.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
.+++|++..++.+..++... ..+.+.|+|+.|+||||+|+.+++.... ..+. ..+-++.+.......+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~i~--- 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELYG--EDWRENFLELNASDERGIDVIRNKIK--- 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHcC--CccccceEEeccccccchHHHHHHHH---
Confidence 45899999999999999865 4556899999999999999999988621 1221 112222222211111111111
Q ss_pred CCCCCCcccccHHHHHHHHHHHh---CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcH-HHHh-hc
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKTL---SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCG-RM 200 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~-~~ 200 (791)
.+.+.. ...+-++++|+++.... ...+...+.. ....+++|+++... .+.. ..
T Consensus 91 -----------------~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~---~~~~~~lIl~~~~~~~l~~~l~ 150 (319)
T PRK00440 91 -----------------EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM---YSQNTRFILSCNYSSKIIDPIQ 150 (319)
T ss_pred -----------------HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc---CCCCCeEEEEeCCccccchhHH
Confidence 111111 12356899999975522 2233333333 33446677766432 1111 11
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
.....+++.++++++...++.+.+...+...+ ++.+..+++.++|.+..+
T Consensus 151 sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 23346899999999999999988865553222 667889999999988653
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1e-06 Score=95.52 Aligned_cols=183 Identities=19% Similarity=0.178 Sum_probs=109.7
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-C-----------------CCEEEEEE
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-D-----------------FDYVIWVV 109 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~-----------------f~~~~wv~ 109 (791)
-.++||.+...+.|...+..+.-.+.+.++|+.|+||||+|+.+++.+..... . ...+..++
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~ 92 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELD 92 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEe
Confidence 35589999998888888887634466899999999999999999887621100 0 00122222
Q ss_pred eCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCC
Q 038105 110 VSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSP 182 (791)
Q Consensus 110 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~ 182 (791)
++...+ .++.. .+.+.. .+++-++|+|+++... ..+.+...+.. .+
T Consensus 93 aa~~~g-----------------------id~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~---p~ 145 (472)
T PRK14962 93 AASNRG-----------------------IDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE---PP 145 (472)
T ss_pred CcccCC-----------------------HHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh---CC
Confidence 221111 12211 222221 2456799999997542 23444444433 23
Q ss_pred CCcEEEEEcCcH-HHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHHHHH
Q 038105 183 KNSAVVFTTRFV-DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITIGRA 259 (791)
Q Consensus 183 ~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~ 259 (791)
....+|++|.++ .+... ......+++.+++.++....+.+.+...+..- .++.+..|++.++|- +.++..+..+
T Consensus 146 ~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344445444432 22221 23446899999999999999988875544222 256778888888664 5666666554
Q ss_pred h
Q 038105 260 M 260 (791)
Q Consensus 260 l 260 (791)
.
T Consensus 223 ~ 223 (472)
T PRK14962 223 W 223 (472)
T ss_pred H
Confidence 3
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=8.4e-07 Score=96.54 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=110.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
.++||-+..++.|...+..+.-.+.+.++|+.|+||||+|+.+++.+-- ..... ...+..+..-.. ...+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~~C~~----C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCEQCTN----CISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCCCChH----HHHHhcCC
Confidence 4579999999999998887744578999999999999999999987621 10000 000000000000 00010000
Q ss_pred CCCC---CCcccccHHHHHHHHHHH----hCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEE-EcCcHHHH
Q 038105 128 GLYT---DSWKDKRLEEKAQDIFKT----LSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVF-TTRFVDVC 197 (791)
Q Consensus 128 ~~~~---~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iiv-TtR~~~~~ 197 (791)
.... +.......++....+... +.+++-++|+|+++.. ..+..+...+.. ....+.+|+ |++...+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe---pp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE---PPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh---cCCCEEEEEEeCChHHhh
Confidence 0000 000111222222221111 2345668999999865 335555555544 444556555 44444443
Q ss_pred hhc-cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 198 GRM-EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 198 ~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
... .....+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.+.-+
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 322 33457999999999999999998876553222 566788999999987533
No 71
>PF14516 AAA_35: AAA-like domain
Probab=98.65 E-value=8.5e-06 Score=85.14 Aligned_cols=206 Identities=14% Similarity=0.111 Sum_probs=124.0
Q ss_pred cCCCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-----cCHH---
Q 038105 46 HTEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-----LQLE--- 117 (791)
Q Consensus 46 ~~~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~--- 117 (791)
+..+.+|.|...-+++.+.+.+. ...+.|.|+-.+|||+|..++.+.. ...--.++++++... .+..
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l---~~~~~~~v~id~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERL---QQQGYRCVYIDLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHH---HHCCCEEEEEEeecCCCcccCCHHHHH
Confidence 34566789997777888887763 3799999999999999999999887 222345668886652 2344
Q ss_pred -HHHHHHHHHhCCCCCC---cc--cccHHHHHHHHHHHh---CCceEEEEEcCccCccccc--------ccccCCCCCC-
Q 038105 118 -KIQETIGKKIGLYTDS---WK--DKRLEEKAQDIFKTL---SKKKFALLLDDLWERVDLK--------KVGVPLPSRS- 179 (791)
Q Consensus 118 -~~~~~i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~--------~~~~~l~~~~- 179 (791)
.+...+.+++++...- +. ..........+.+.+ .+++++|+||+++...... .++.......
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 4445555555543210 00 112223333343332 3689999999998542211 1111111000
Q ss_pred CCCCC-cEE-EEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 180 NSPKN-SAV-VFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 180 ~~~~~-~~i-ivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
..... -++ ++.+........ +.....++|++|+.+|..+|+.++-..-. ....++|.+.++|+|.-
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHH
Confidence 00011 122 222221111111 12345799999999999999988743211 34499999999999999
Q ss_pred HHHHHHHhhcC
Q 038105 253 LITIGRAMAYK 263 (791)
Q Consensus 253 l~~~~~~l~~~ 263 (791)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999998764
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=103.18 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCCCccEEEecCCCCcccch-hhhccCCcccEEeecCcccccc---ccccccCcccccEEecCCCcccccchh--hhcC
Q 038105 431 PTCPHLLTLFLNDNELTTITD-DFFQSMPCLTVLKMSDIRMLQQ---LPMGISKLVSLQLLDISNTEVEELPEE--LKAL 504 (791)
Q Consensus 431 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~---lp~~~~~l~~L~~L~L~~~~l~~lp~~--~~~l 504 (791)
+++.+|+...+..+.+...+. .....|++++.|||+.| .+.. +-.....|++|+.|+|+.|++.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 456667777777766554442 33566777777777776 3322 222345566777777777665532221 2245
Q ss_pred CCCceeeccCcccccccchhHhhcCcCCCeeeeeecC
Q 038105 505 VNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG 541 (791)
Q Consensus 505 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 541 (791)
+.|+.|.++.|.+...--..+...+++|+.|++.+|.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 5666666666654321112223556666666666663
No 73
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=7.7e-08 Score=85.57 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
.+++.|.|+-|+||||++++++++.. ....++|+++.......... .+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhh
Confidence 37899999999999999999998872 34567787765543211000 00 223333434
Q ss_pred CCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHHhhc------cccceEEeccCChHHH
Q 038105 151 SKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRM------EDRRMFKVACLSDEDA 216 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~------~~~~~~~l~~l~~~e~ 216 (791)
..++.+++||++....+|......+.+ ...+.+|++|+......... +....+++.||+-.|-
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d---~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVD---NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHH---hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 447889999999888887766555554 34567899999876654321 2234689999988763
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.3e-06 Score=91.57 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=112.7
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC-CCCCE-EE-EEEeCCccCHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDY-VI-WVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~~f~~-~~-wv~~~~~~~~~~~~~~i~ 124 (791)
-.+++|.+...+.+.+.+..+.-.+...++|+.|+||+|+|..+++.+--.. ..... .. -.++..... -...+.+.
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~-c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD-HPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC-ChHHHHHH
Confidence 3568999999999999999874456799999999999999999988762111 00000 00 000000000 00111111
Q ss_pred HHhCCCC---------CCc----ccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCC
Q 038105 125 KKIGLYT---------DSW----KDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKN 184 (791)
Q Consensus 125 ~~l~~~~---------~~~----~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~ 184 (791)
.. ..+. +.. .....++ ++.+.+++. +++-++|+|+++.++ ....+...+.. ...+
T Consensus 97 ~~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe---pp~~ 171 (365)
T PRK07471 97 AG-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE---PPAR 171 (365)
T ss_pred cc-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc---CCCC
Confidence 00 0000 000 0112333 444555543 456799999997653 23344444443 3445
Q ss_pred cEEEEEcCcHHH-Hh-hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 185 SAVVFTTRFVDV-CG-RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 185 ~~iivTtR~~~~-~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+.+|++|.+... .. ..+....+.+.+++.++..+++.+...... .+....++..++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 667777765432 21 123456899999999999999988653211 233367899999999865444
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.63 E-value=2.1e-08 Score=109.01 Aligned_cols=171 Identities=27% Similarity=0.385 Sum_probs=115.9
Q ss_pred EEEcccCCC-CCCCCCCCCCCccEEEecCCCCcccchhhhccCC-cccEEeecCccccccccccccCcccccEEecCCCc
Q 038105 416 RLSLMRNSI-DNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMP-CLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE 493 (791)
Q Consensus 416 ~l~l~~~~~-~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 493 (791)
.+....+.+ .....+..++.+..|.+.++.+..+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 456666655 4444455567777788887777777664 33443 7788888777 666776667777888888888887
Q ss_pred ccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEe
Q 038105 494 VEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITF 573 (791)
Q Consensus 494 l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 573 (791)
+..+|...+.+++|+.|++++|.+ ..+|.. ++.+..|++|.+++|.+. ..+..+.+++++..+.+..
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i-~~l~~~-~~~~~~L~~l~~~~N~~~-----------~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKI-SDLPPE-IELLSALEELDLSNNSII-----------ELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCcc-ccCchh-hhhhhhhhhhhhcCCcce-----------ecchhhhhcccccccccCC
Confidence 777777766777788888887776 677763 345556777777777422 2445566666676666655
Q ss_pred echhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 574 RSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
|.+..+ +..++.+++|+.|++++|.+..
T Consensus 242 n~~~~~----------------------------~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 242 NKLEDL----------------------------PESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ceeeec----------------------------cchhccccccceeccccccccc
Confidence 554331 2346677789999999887776
No 76
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=9.3e-07 Score=95.33 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=112.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhccc-CCC-----------------CCCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFV-DNP-----------------TDFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~-~~~-----------------~~f~~~~wv~~ 110 (791)
.++||-+..++.|...+..+.-.+...++|+.|+||||+|+.++..+- ... +.+..++.++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 458999999999999988774456899999999999999999987541 000 11122334443
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEE
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVV 188 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~ii 188 (791)
+...+.+++. ++.+..... -..++.-++|+|+++... ....+...+.. ....+++|
T Consensus 93 as~~~vddIR-~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe---Pp~~v~fI 150 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEE---PAPHVKFI 150 (491)
T ss_pred ccCCCHHHHH-HHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHhC---CCCCeEEE
Confidence 3222222221 111111000 012345689999997553 34555555554 44566666
Q ss_pred EEcCc-HHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 189 FTTRF-VDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 189 vTtR~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
++|.+ ..+... .+....+++.+++.++..+.+.+.+...+..-+ ++.+..|++.++|.+..
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 65543 333222 234567999999999999999998876553222 56788899999998753
No 77
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=7.8e-07 Score=98.73 Aligned_cols=196 Identities=15% Similarity=0.170 Sum_probs=111.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD-NPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
.++||-+..++.|.+++..+.-.+.+.++|+.|+||||+|+.+++.+-- ......+...-.++.- .....|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHHcCC
Confidence 4589999999999999988744567799999999999999999877610 0000000000011111 0111110000
Q ss_pred CC---CCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCc-HHH
Q 038105 128 GL---YTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRF-VDV 196 (791)
Q Consensus 128 ~~---~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~-~~~ 196 (791)
.. ..+.......++..+ +.+.. .++.-++|||+++.. ..+..+...+.. .....++|++|.+ ..+
T Consensus 92 h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE---PP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE---PPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc---CCCCeEEEEEECCchhh
Confidence 00 000001112222222 22222 234458999999865 334455555544 3445666665543 233
Q ss_pred H-hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 197 C-GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 197 ~-~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
. ...+....+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+.-+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2 22234568999999999999999988765553222 56788899999998754433
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.62 E-value=8.3e-08 Score=92.14 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=33.6
Q ss_pred cccchHHHHHHHHHHhc--cCCCceEEEEEcCCCCcHHHHHHHHHhccc
Q 038105 50 TVVGLQSQLEQVWRCLV--QEPAAGIIGLYGMGGVGKTTLLTQINNKFV 96 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~--~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 96 (791)
.||||+++++++...+. .....+.+.|+|++|+|||+|+++++..+.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 48999999999999993 334679999999999999999999999883
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=5.6e-07 Score=100.04 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh-
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI- 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l- 127 (791)
.++||-+..++.|...+..+.-.+.+.++|+.|+||||+|+.+++.+-- ...+.. -.+..- .....|...-
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~~---~pCg~C----~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGITA---TPCGEC----DNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCCC---CCCCCC----HHHHHHHcCCC
Confidence 4589999999999999988733455789999999999999999887621 000000 000000 1111111000
Q ss_pred ----CCCCCCcccccHHHHHHHHHHH-----hCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-H
Q 038105 128 ----GLYTDSWKDKRLEEKAQDIFKT-----LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-D 195 (791)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~ 195 (791)
.+... .....++.. .+.+. ..++.-++|||+++... ....+...+.. .....++|++|.+. .
T Consensus 88 ~D~ieidaa--s~~~VddiR-~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE---Pp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 88 VDLIEIDAA--SRTKVEDTR-ELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLLATTDPQK 161 (647)
T ss_pred CCceeeccc--ccCCHHHHH-HHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc---CCCCeEEEEecCCccc
Confidence 00000 011122222 22222 23456699999998653 34455444444 34456666655543 3
Q ss_pred HHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 196 VCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 196 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+... .+....+.+.+++.++..+.+.+.+...+... .++....|+..++|.+.-...
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3211 23356899999999999999988775433222 256678899999998864333
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=8.4e-07 Score=97.13 Aligned_cols=195 Identities=14% Similarity=0.181 Sum_probs=109.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++|++..++.+.+++..+...+.+.++|+.|+||||+|+.+++.+. ........ .+... .....+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~-C~~~~~~~---~Cg~C----~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN-CLNPKDGD---CCNSC----SVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc-CCCCCCCC---CCccc----HHHHHHHcCCC
Confidence 458999999999999998764567789999999999999999988762 11100000 00000 01111111000
Q ss_pred CC---CCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCc-HHHH
Q 038105 129 LY---TDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRF-VDVC 197 (791)
Q Consensus 129 ~~---~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~-~~~~ 197 (791)
.. .+.......++. +.+.+.. ..++=++|+|+++... ....+...+.. .+....+|++|.. ..+.
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE---PPKHVVFIFATTEFQKIP 163 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh---CCCcEEEEEECCChHhhh
Confidence 00 000000112222 1121211 1223369999997652 33444444443 3345555555533 3332
Q ss_pred hh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHHH
Q 038105 198 GR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIGR 258 (791)
Q Consensus 198 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 258 (791)
.. .+....+++.+++.++....+.+.+...+...+ .+.+..+++.++|.+. |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 21 234567999999999999999987755442222 5668889999999764 4444443
No 81
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.60 E-value=3.3e-07 Score=89.49 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=106.1
Q ss_pred Ccccch-HHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 49 PTVVGL-QSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 49 ~~~vGR-~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
..++|- .+..-+..+.+.++ .....+.|+|+.|+|||.|++++++..... ..-..++|+++ .+....+..
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~~------~~f~~~~~~ 81 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLSA------EEFIREFAD 81 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEEH------HHHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeecH------HHHHHHHHH
Confidence 344564 34444555555443 234578999999999999999999886321 22235777764 344444444
Q ss_pred HhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccc---c-ccccCCCCCCCCCCCcEEEEEcCcH-------
Q 038105 126 KIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDL---K-KVGVPLPSRSNSPKNSAVVFTTRFV------- 194 (791)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~-~~~~~l~~~~~~~~~~~iivTtR~~------- 194 (791)
.+.. .. ...+.+.+++ -=+|+|||++....- + .+...+... ...|.++|+|++..
T Consensus 82 ~~~~-------~~----~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~--~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 82 ALRD-------GE----IEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRL--IESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHT-------TS----HHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHH--HHTTSEEEEEESS-TTTTTTS
T ss_pred HHHc-------cc----chhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHH--HhhCCeEEEEeCCCCcccccc
Confidence 4321 11 2334444453 357899999754221 1 111111110 23467899999633
Q ss_pred --HHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 195 --DVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 195 --~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
....++....++++++.++++..+++.+.+...+...+ ++.++-+++.+.+....+..+-
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHH
Confidence 22334456678999999999999999999887665443 6778888888777766555444
No 82
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=8.7e-07 Score=97.22 Aligned_cols=180 Identities=16% Similarity=0.118 Sum_probs=110.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC------------------CCCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------------TDFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~ 110 (791)
.++||-+..++.|..++..+.-.+...++|+.|+||||+|+.+++.+--.. +.+..++.++.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 458999999999999998874456678999999999999999988761100 01112333333
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEE
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVV 188 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~ii 188 (791)
.....++++ +++...+... -..++.-++|||+++.. .....+...+.. ....+++|
T Consensus 96 as~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe---pp~~~~fI 153 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEE---PPSHVKFI 153 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhc---cCCCeEEE
Confidence 222222222 1121211110 01244568899999865 334445444544 44567676
Q ss_pred EEcCcH-HHHh-hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 189 FTTRFV-DVCG-RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 189 vTtR~~-~~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
++|.+. .+.. -.+....+++.+++.++..+.+.+.+...+... .++....|++.++|.+.-+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHH
Confidence 665443 2221 123345689999999999888887776544222 2556778999999987543
No 83
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.59 E-value=6e-09 Score=99.79 Aligned_cols=133 Identities=25% Similarity=0.277 Sum_probs=81.0
Q ss_pred CCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceee
Q 038105 432 TCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLN 511 (791)
Q Consensus 432 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 511 (791)
.+..|.+|++++|.++.+..+ .+-.|.++.|++++| .+..+. ++..+++|..|||++|.++++...-.++.|.+.|.
T Consensus 282 TWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence 345566667777666555444 556667777777776 343333 36666677777777776665544445666667777
Q ss_pred ccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhH
Q 038105 512 LDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAY 579 (791)
Q Consensus 512 l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 579 (791)
+.+|.+ ..+.. ++++=+|..|++.+|+|..+ .-...+++++.|+++.+.+|++..+
T Consensus 359 La~N~i-E~LSG--L~KLYSLvnLDl~~N~Ie~l---------deV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKI-ETLSG--LRKLYSLVNLDLSSNQIEEL---------DEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhH-hhhhh--hHhhhhheeccccccchhhH---------HHhcccccccHHHHHhhcCCCcccc
Confidence 776654 44433 45666666777777766543 2345566677777777766665443
No 84
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.58 E-value=5.4e-07 Score=84.98 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=91.4
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
-.+|||-++.++.+.-.+.. ++....+.+|||+|+||||||.-+++.. ...|. +++...-..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~i~k-------- 88 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPAIEK-------- 88 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC--S--------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchhhhh--------
Confidence 46789999988887655542 2357789999999999999999999987 33432 333211111
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc--c-------cccccc-CCCCCCCC--------CCCc
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV--D-------LKKVGV-PLPSRSNS--------PKNS 185 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~-------~~~~~~-~l~~~~~~--------~~~~ 185 (791)
..++...+ ..++ .+.+|++|+++... + ++.... .+...... .+-+
T Consensus 89 ---------------~~dl~~il-~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ---------------AGDLAAIL-TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ---------------CHHHHHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ---------------HHHHHHHH-HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 11111111 1122 34577778887531 1 111110 01110000 1112
Q ss_pred EEEEEcCcHHHHhhcc--ccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 186 AVVFTTRFVDVCGRME--DRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 186 ~iivTtR~~~~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
-|=-|||..-+...+. ...+.+++.++.+|-.+++.+.+..-+...+ ++.+.+|+.++.|-|.-..-+
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHH
Confidence 2334777543322221 2235689999999999999988766554333 678999999999999654433
No 85
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=3.4e-07 Score=84.20 Aligned_cols=125 Identities=21% Similarity=0.143 Sum_probs=73.4
Q ss_pred cchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 038105 52 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT 131 (791)
Q Consensus 52 vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 131 (791)
+||+..++++...+... ..+.+.|+|+.|+|||++++++++... .....++++++............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh-----
Confidence 48899999999998774 457899999999999999999999872 223456677654433221111111000
Q ss_pred CCcccccHHHHHHHHHHHhCCceEEEEEcCccCc--ccccccccCCCCCCC---CCCCcEEEEEcCcH
Q 038105 132 DSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKKVGVPLPSRSN---SPKNSAVVFTTRFV 194 (791)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~---~~~~~~iivTtR~~ 194 (791)
............++.++|+||++.. .....+...+..... ...+..+|+|+...
T Consensus 72 ---------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ---------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ---------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 0011112223456789999999853 111222211211100 13567888888754
No 86
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=2.1e-06 Score=94.55 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=112.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-------------------CEEEEEE
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-------------------DYVIWVV 109 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-------------------~~~~wv~ 109 (791)
.++||-+..++.|.+.+..+.-.+.+.++|+.|+||||+|+.+++.+-- .... ..+++++
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C-~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC-ETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc-cCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 4579999999999998887634678889999999999999999987621 1000 0122222
Q ss_pred eCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCc--ccccccccCCCCCCCCC
Q 038105 110 VSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKVGVPLPSRSNSP 182 (791)
Q Consensus 110 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 182 (791)
..... ..++. +.+.+.+ .+++-++|||+++.. .....+...+.. ..
T Consensus 95 ~a~~~-----------------------~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE---P~ 147 (624)
T PRK14959 95 GASNR-----------------------GIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE---PP 147 (624)
T ss_pred ccccc-----------------------CHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc---cC
Confidence 11111 11221 1122222 345668999999765 223444444433 23
Q ss_pred CCcEEEEEcCc-HHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc-hHHHHHHHH
Q 038105 183 KNSAVVFTTRF-VDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP-LALITIGRA 259 (791)
Q Consensus 183 ~~~~iivTtR~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~ 259 (791)
....+|++|.+ ..+... .+....+++.+++.++..+.+.+.+...+... ..+.++.|++.++|.+ .|+..+...
T Consensus 148 ~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 148 ARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34556665554 333222 22345789999999999999988775544222 2677888999999965 566666554
Q ss_pred h
Q 038105 260 M 260 (791)
Q Consensus 260 l 260 (791)
+
T Consensus 225 l 225 (624)
T PRK14959 225 L 225 (624)
T ss_pred H
Confidence 4
No 87
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.57 E-value=7.8e-08 Score=86.36 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC--CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 147 (791)
+.+++.|+|++|+|||+++++++..+... ...-..++|+.+....+...+...+++.++..... .....+..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 45789999999999999999999876210 00135678999988889999999999999876532 345677778888
Q ss_pred HHhCCce-EEEEEcCccCc-c--cccccccCCCCCCCCCCCcEEEEEcCc
Q 038105 148 KTLSKKK-FALLLDDLWER-V--DLKKVGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 148 ~~l~~~~-~LlVlDdv~~~-~--~~~~~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
+.+...+ .+||+||++.. . .++.+.... ...+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-----~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-----NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-----CSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-----hCCCCeEEEEECh
Confidence 8886554 59999999765 2 122232222 2446677777664
No 88
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.3e-06 Score=96.64 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=110.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC------------------CCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 110 (791)
.++||-+..++.+..++..+.-.+.+.++|+.|+||||+|+.+++.+--... .|..+++++.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 4589999999999999987634556789999999999999999887611000 0111222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCC
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~ 183 (791)
+... ..++.. .+.+.. .+++-++|+|+++.... ...+...+.. ...
T Consensus 96 ~~~~-----------------------~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe---pp~ 148 (527)
T PRK14969 96 ASNT-----------------------QVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE---PPE 148 (527)
T ss_pred cccC-----------------------CHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC---CCC
Confidence 1111 122221 222222 24556899999986643 4444444444 344
Q ss_pred CcEEEEEcCcH-HHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 038105 184 NSAVVFTTRFV-DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIG 257 (791)
Q Consensus 184 ~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 257 (791)
.+.+|++|.++ .+... .+....+++.+++.++..+.+.+.+...+... .++.+..|++.++|.+. |+..+.
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56666655443 22211 22345789999999999999988775444222 25667889999999875 444443
No 89
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.55 E-value=5e-07 Score=89.62 Aligned_cols=171 Identities=14% Similarity=0.115 Sum_probs=100.5
Q ss_pred ccchHHHH-HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 51 VVGLQSQL-EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 51 ~vGR~~~~-~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
+.|+..+. ..+.++.......+.+.|+|+.|+|||+||+++++... ..-..+.++++..... . +
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~---~~~~~~~~i~~~~~~~------~----~-- 85 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS---YGGRNARYLDAASPLL------A----F-- 85 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEehHHhHH------H----H--
Confidence 34654444 44444444333457899999999999999999998762 1222455665433210 0 0
Q ss_pred CCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCc-EEEEEcCcHHHHh--------
Q 038105 130 YTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNS-AVVFTTRFVDVCG-------- 198 (791)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~-~iivTtR~~~~~~-------- 198 (791)
... ...-++|+||++.... .+.+...+... ...+. .+|+|++......
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~--~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRV--RAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHH--HHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 111 2234788999975422 12222223210 12233 4667766433211
Q ss_pred hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 199 RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 199 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
.+.....+++.++++++-..++.+.+...+...+ ++..+.+++...|++..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2223468999999999888888776544333333 6778888999999998877766554
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.5e-06 Score=96.81 Aligned_cols=197 Identities=14% Similarity=0.161 Sum_probs=113.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
.++||.+..++.|...+..+.-.+.+.++|+.|+||||+|+.+++.+--....-. ...+-.+..- .....|...-
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHhcCC
Confidence 4589999999999999988745667999999999999999999987621000000 0000001100 0111111110
Q ss_pred CCCC---CCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEc-CcHHH
Q 038105 128 GLYT---DSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTT-RFVDV 196 (791)
Q Consensus 128 ~~~~---~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTt-R~~~~ 196 (791)
.... +.......++.. .+.+.++ .++-++|+|+++... ....+...+.. ....+++|++| ....+
T Consensus 100 h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe---Pp~~~~fIl~tte~~kl 175 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE---PPPHVKFIFATTEIRKV 175 (598)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh---CCCCeEEEEEeCChhhh
Confidence 0000 000111222222 2222222 334578999997653 24455545544 34456666554 33333
Q ss_pred Hhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 197 CGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 197 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
... .+....+++.+++.++..+.+.+.+...+.... .+.+..|++.++|.+.-+...
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 222 233467999999999999999998765543222 567888999999998654433
No 91
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2e-06 Score=90.96 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=104.3
Q ss_pred CcccchHHHHHHHHHHhccCC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCC-----------------CC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEP---------AAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-----------------DF 102 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~---------~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-----------------~f 102 (791)
++++|-+..++.|.+.+..+. -.+.+.++|+.|+|||++|+.++..+--... ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457999999999999998752 3567889999999999999999876521000 00
Q ss_pred CEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCC
Q 038105 103 DYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPL 175 (791)
Q Consensus 103 ~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l 175 (791)
.-+.++.... .....++. +.+.+.. .+++-++|||+++.+.. ...+...+
T Consensus 85 pD~~~i~~~~----------------------~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 85 PDVRVVAPEG----------------------LSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCEEEecccc----------------------ccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 1111211100 01112222 2233332 23445888899986632 23344444
Q ss_pred CCCCCCCCCcEEEEEcCcH-HHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 176 PSRSNSPKNSAVVFTTRFV-DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 176 ~~~~~~~~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
.. ...+..+|++|.+. .+... .+....+.+.+++.++..+.+.+..+. + .+.+..++..++|.|...
T Consensus 142 Ee---p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 142 EE---PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRA 210 (394)
T ss_pred hc---CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHH
Confidence 33 34456666666543 32222 234468999999999999998754321 1 456788999999999644
Q ss_pred H
Q 038105 254 I 254 (791)
Q Consensus 254 ~ 254 (791)
.
T Consensus 211 ~ 211 (394)
T PRK07940 211 R 211 (394)
T ss_pred H
Confidence 3
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=2.2e-06 Score=82.15 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC------------------CCCEEEEEEeCCccCHHHHHH
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~~~~~~~ 121 (791)
.+.+.+..+.-.+.+.++|+.|+|||++|+.++..+..... .+....++.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-------- 74 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-------- 74 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC--------
Confidence 45566665534578999999999999999999888632100 0111111111100
Q ss_pred HHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcH
Q 038105 122 TIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFV 194 (791)
Q Consensus 122 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~ 194 (791)
....++.. .+.+.+ .+.+-++|+||++.... .+.+...+.. .+..+.+|++|++.
T Consensus 75 --------------~~~~~~i~-~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~---~~~~~~~il~~~~~ 136 (188)
T TIGR00678 75 --------------SIKVDQVR-ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEE---PPPNTLFILITPSP 136 (188)
T ss_pred --------------cCCHHHHH-HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcC---CCCCeEEEEEECCh
Confidence 01112221 122222 24456899999976532 4445555544 44566677777654
Q ss_pred -HHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 195 -DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 195 -~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
.+... ......+++.+++.++..+++.+. + . .++.++.+++.++|.|.
T Consensus 137 ~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i-----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 137 EKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---I-----SEEAAELLLALAGGSPG 186 (188)
T ss_pred HhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---C-----CHHHHHHHHHHcCCCcc
Confidence 22111 123458999999999999999887 2 1 14678899999999985
No 93
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.4e-06 Score=93.53 Aligned_cols=193 Identities=11% Similarity=0.119 Sum_probs=109.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEE-----EeCCccCHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWV-----VVSKDLQLEKIQETI 123 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv-----~~~~~~~~~~~~~~i 123 (791)
.+++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++.+- ....+...-|. .+..-.+. ..+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c----~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESC----RDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHH----HHH
Confidence 468999999999999998763445688999999999999999988762 11101000000 01110000 111
Q ss_pred HHHhCCCCCCc---ccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEc-C
Q 038105 124 GKKIGLYTDSW---KDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTT-R 192 (791)
Q Consensus 124 ~~~l~~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTt-R 192 (791)
..........+ .....++.. .+.+.+ .+.+-++|+|+++... .++.+...+.. ....+.+|++| +
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe---p~~~t~~Il~t~~ 166 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE---PPPHAIFIFATTE 166 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc---CCCCeEEEEEeCC
Confidence 10000000000 011122222 223333 2344588999997653 34455555544 44456666555 4
Q ss_pred cHHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 193 FVDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 193 ~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
...+... ......+++.++++++..+.+.+.+...+... .++.++.+++.++|.+.-+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i---~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV---DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 3333322 12335789999999999999988775443222 2677899999999988543
No 94
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.7e-07 Score=106.53 Aligned_cols=89 Identities=24% Similarity=0.375 Sum_probs=41.7
Q ss_pred ccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCccc-ccchhhhcCCCCceeeccC
Q 038105 436 LLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVE-ELPEELKALVNLKCLNLDW 514 (791)
Q Consensus 436 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~ 514 (791)
++.|++++|.+.+..+..+..+++|+.|+|++|...+.+|..++.+++|++|+|++|+++ .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344444444444333333444455555555444333344444444455555555544444 3444444445555555554
Q ss_pred cccccccchh
Q 038105 515 TDVLVEVPQQ 524 (791)
Q Consensus 515 ~~~~~~~p~~ 524 (791)
|.+.+.+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 4444444443
No 95
>PRK09087 hypothetical protein; Validated
Probab=98.53 E-value=9.4e-07 Score=86.57 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc
Q 038105 55 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW 134 (791)
Q Consensus 55 ~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 134 (791)
....-.+.+.+.. ...+.+.|+|+.|+|||+|++.++... . +.|++.. .....+..
T Consensus 29 N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~------~~~~~~~~--------- 84 (226)
T PRK09087 29 NRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPN------EIGSDAAN--------- 84 (226)
T ss_pred hHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHH------HcchHHHH---------
Confidence 4444334333332 235679999999999999999988764 1 1243321 11111111
Q ss_pred ccccHHHHHHHHHHHhCCceEEEEEcCccCcc-cccccccCCCCCCCCCCCcEEEEEcCc---------HHHHhhccccc
Q 038105 135 KDKRLEEKAQDIFKTLSKKKFALLLDDLWERV-DLKKVGVPLPSRSNSPKNSAVVFTTRF---------VDVCGRMEDRR 204 (791)
Q Consensus 135 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~~~~~~~~l~~~~~~~~~~~iivTtR~---------~~~~~~~~~~~ 204 (791)
.+.+ -++++||++... +-+.+...+... ...|..+|+|++. +....++....
T Consensus 85 --------------~~~~--~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 85 --------------AAAE--GPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred --------------hhhc--CeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 1111 278889996431 112222222211 2346678888873 22333445567
Q ss_pred eEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 205 MFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 205 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
+++++++++++-.+++.+.+...+...+ ++..+-|++.+.|...++..+.
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHH
Confidence 8999999999999999999876554333 6788889999888877666543
No 96
>PRK05642 DNA replication initiation factor; Validated
Probab=98.53 E-value=8.8e-07 Score=87.60 Aligned_cols=176 Identities=15% Similarity=0.192 Sum_probs=102.9
Q ss_pred cccchHHHHHHHHHHhccC---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 50 TVVGLQSQLEQVWRCLVQE---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~~---~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
.++|......+..+.+..+ ...+.+.|+|+.|+|||.|++++++... .....++|++... +...
T Consensus 21 F~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~---- 87 (234)
T PRK05642 21 YYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR---- 87 (234)
T ss_pred cCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh----
Confidence 3446555544444433221 1236789999999999999999998762 2234577877532 1110
Q ss_pred hCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc---ccccc-cccCCCCCCCCCCCcEEEEEcCcHH-H-----
Q 038105 127 IGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER---VDLKK-VGVPLPSRSNSPKNSAVVFTTRFVD-V----- 196 (791)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~~~~~iivTtR~~~-~----- 196 (791)
...+.+.+.+-. ++|+||++.. ..++. +...+... ...|..+|+|++... .
T Consensus 88 ----------------~~~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~--~~~g~~ilits~~~p~~l~~~~ 148 (234)
T PRK05642 88 ----------------GPELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRL--RDSGRRLLLAASKSPRELPIKL 148 (234)
T ss_pred ----------------hHHHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHH--HhcCCEEEEeCCCCHHHcCccC
Confidence 012233333333 6789999633 23222 22222211 234567888887322 2
Q ss_pred ---HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 197 ---CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 197 ---~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
..++....+++++++++++-.+++.+++...+...+ ++..+-+++.+.|....+..+-..+
T Consensus 149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 222234467999999999999999976654433333 6778888888888766555444333
No 97
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.53 E-value=9.3e-07 Score=100.50 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=98.4
Q ss_pred CcccchHHHHH---HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 49 PTVVGLQSQLE---QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 49 ~~~vGR~~~~~---~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
++|+|.+..+. .+.+.+..+ ..+.+.|+|++|+||||+|+.+++.. ...|. .+++.. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~-------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVK-------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhH--------
Confidence 45899988874 466666655 66778999999999999999999876 33331 122110 0011
Q ss_pred HhCCCCCCcccccHHHHHHHHHHHh--CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEE--EcCcHHH--H
Q 038105 126 KIGLYTDSWKDKRLEEKAQDIFKTL--SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVF--TTRFVDV--C 197 (791)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iiv--TtR~~~~--~ 197 (791)
+..+......+.+ .+++.++||||++... +.+.+...+ ..+..+++ ||.++.. .
T Consensus 92 ------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l------E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV------ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh------cCceEEEEEecCCChHhhhh
Confidence 1111222222222 2456899999997542 233333322 22444554 3444321 1
Q ss_pred h-hccccceEEeccCChHHHHHHHHHHhCccc----cCCCCChHHHHHHHHHHcCCCch
Q 038105 198 G-RMEDRRMFKVACLSDEDAWELFREKVGEET----IESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 198 ~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~----~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
. ..+...++++++++.++...++.+.+.... .....-.++..+.|++.+.|...
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1 112345799999999999999988765210 01112225667888898988754
No 98
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.1e-08 Score=98.10 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=49.8
Q ss_pred cccEEecCCCccc--ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC-ccccccccccchhchHHH
Q 038105 483 SLQLLDISNTEVE--ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG-IRSVYGRFSSWYENVAEE 559 (791)
Q Consensus 483 ~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~ 559 (791)
.|++|||++..|+ .+.--++.+++|+.|.+.++.+...+... +.+-.+|+.|+++.|. +++. ..---
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n---------~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTEN---------ALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccchh---------HHHHH
Confidence 4777788777666 44444566777777777777665555444 5666677777777654 2221 12233
Q ss_pred hcCCCCCcEEEEEeech
Q 038105 560 LLGLKHLEVLEITFRSF 576 (791)
Q Consensus 560 l~~l~~L~~L~l~~~~~ 576 (791)
+.+|+.|..|+++++..
T Consensus 256 ~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHhhhhHhhcCchHhhc
Confidence 45566666666665544
No 99
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=4e-06 Score=92.82 Aligned_cols=197 Identities=12% Similarity=0.078 Sum_probs=111.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.++||.+..++.|..++..+.-.+...++|+.|+||||+|+.++..+-- ..... +-.+..-. ....+...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~~pCg~C~----~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---ATPCGVCE----SCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---CCcccccH----HHHHhhcccC
Confidence 4589999999999999988744556789999999999999999987621 00000 00000000 0011110000
Q ss_pred CCC-----CCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcC-cHH
Q 038105 129 LYT-----DSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTR-FVD 195 (791)
Q Consensus 129 ~~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR-~~~ 195 (791)
... +.......++.. .+.+.. .+++-++|||+++.. .....+...+.. ......+|++|. ...
T Consensus 85 ~~~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE---pp~~~~fIL~tte~~k 160 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE---PPEHLIFIFATTEPEK 160 (584)
T ss_pred CCceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc---CCCCeEEEEEeCChHh
Confidence 000 000011122221 122111 234558899999755 334445445544 444566665554 333
Q ss_pred HHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHHHHh
Q 038105 196 VCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIGRAM 260 (791)
Q Consensus 196 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l 260 (791)
+... .+....+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.+. ++..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 234568999999999999999887765442222 5667888999999874 444444433
No 100
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=4.7e-06 Score=89.23 Aligned_cols=178 Identities=16% Similarity=0.212 Sum_probs=105.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCC-----CCCCCE-EEEEEeCCccCHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-----PTDFDY-VIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~~~ 122 (791)
.+++|.+..++.+.+.+..+.-.+.+.++|+.|+|||++|+.+++..... ...|.. ++-++.....+..++. +
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~-~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR-N 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-H
Confidence 45799999999999999876456789999999999999999998876221 111211 1111111111111111 1
Q ss_pred HHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcC-cHHHHh-
Q 038105 123 IGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTR-FVDVCG- 198 (791)
Q Consensus 123 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR-~~~~~~- 198 (791)
+.+++.. .. ..+++-++|+|+++.... +..+...+.. ....+.+|+++. ...+..
T Consensus 96 l~~~~~~-----------------~p-~~~~~kiviIDE~~~l~~~~~~~ll~~le~---~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 96 LIDQVRI-----------------PP-QTGKYKIYIIDEVHMLSSAAFNAFLKTLEE---PPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHhh-----------------cc-ccCCcEEEEEeChhhcCHHHHHHHHHHHhC---CCCceEEEEEeCCcccCCHH
Confidence 1111100 00 123445799999975432 3344333332 233455555553 222211
Q ss_pred hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 199 RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 199 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
..+....+++.++++++....+.+.+...+...+ ++.++.+++.++|.+.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALR 204 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHH
Confidence 1223457899999999999999887765543222 5778889999999765
No 101
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=3.1e-06 Score=97.54 Aligned_cols=173 Identities=12% Similarity=0.109 Sum_probs=109.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC---------------------CEEEE
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---------------------DYVIW 107 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f---------------------~~~~w 107 (791)
.++||.+..++.|...+..+.-.+.+.++|+.|+||||+|+.+++.+- -.... ..+++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~-C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~e 93 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN-CVEGPTSTPCGECDSCVALAPGGPGSLDVTE 93 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC-cccCCCCCCCcccHHHHHHHcCCCCCCcEEE
Confidence 458999999999999998874456688999999999999999988772 10000 01112
Q ss_pred EEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH-----hCCceEEEEEcCccCcc--cccccccCCCCCCC
Q 038105 108 VVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-----LSKKKFALLLDDLWERV--DLKKVGVPLPSRSN 180 (791)
Q Consensus 108 v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~ 180 (791)
++.... ...++..+ +.+. ..++.-++|||+++.+. ....+...+..
T Consensus 94 idaas~-----------------------~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE--- 146 (824)
T PRK07764 94 IDAASH-----------------------GGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE--- 146 (824)
T ss_pred eccccc-----------------------CCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---
Confidence 221111 12222222 2221 23455578999998663 34445555554
Q ss_pred CCCCcEEEEEcC-cHHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 181 SPKNSAVVFTTR-FVDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 181 ~~~~~~iivTtR-~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
....+.+|++|. ...+... .+....|++..++.++..+++.+.+...+... ..+....|+..++|.+..
T Consensus 147 pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 147 PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 444566665554 3334332 23456899999999999999988775544222 256678899999998843
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.48 E-value=1.9e-06 Score=91.87 Aligned_cols=172 Identities=18% Similarity=0.214 Sum_probs=100.8
Q ss_pred cccchHHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~---~---------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|++..++++.+.+.. . ...+.|.|+|++|+|||++|+++++.. ...| +.+.. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~----~ 190 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG----S 190 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----H
Confidence 478999999999987642 1 235679999999999999999999987 3332 22211 1
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
.+ .... ..........+.+.. ...+.+|+||+++.... +..+...+....
T Consensus 191 ~l----~~~~--------~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~- 257 (364)
T TIGR01242 191 EL----VRKY--------IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD- 257 (364)
T ss_pred HH----HHHh--------hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC-
Confidence 11 1110 001111223333333 34678999999975310 111111111100
Q ss_pred CCCCcEEEEEcCcHHH-----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFVDV-----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+.+||.||..... .........+++...+.++..++|..+......... .....+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc----CCHHHHHHHcCCCC
Confidence 1345678888874432 221233567999999999999999988755442221 12566777887764
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=5.2e-06 Score=90.46 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=111.4
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-C----------------CC-EEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-D----------------FD-YVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~----------------f~-~~~wv~~ 110 (791)
..+||-+..++.+...+..+.-.+...++|+.|+||||+|+.+++.+.-..+ . ++ .++.++.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 4589999999999999987744556789999999999999999887621110 1 00 1222221
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH----hCCceEEEEEcCccCccc--ccccccCCCCCCCCCCC
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT----LSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKN 184 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~ 184 (791)
.... ..++....+... ..+++-++|+|+++.... ...+...+.. .+..
T Consensus 94 as~~-----------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE---pp~~ 147 (535)
T PRK08451 94 ASNR-----------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE---PPSY 147 (535)
T ss_pred cccc-----------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh---cCCc
Confidence 1111 122222222211 113456889999976532 3444444444 3456
Q ss_pred cEEEEEcCcHH-HHh-hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 185 SAVVFTTRFVD-VCG-RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 185 ~~iivTtR~~~-~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+++|++|.+.. +.. ..+....+++.+++.++..+.+.+.+...+... .++.+..|++.++|.+.-+..+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 77777766532 111 122346899999999999999988876554322 2577889999999988544433
No 104
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4.5e-06 Score=93.50 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=109.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++..+- +.... ..+-.+ .... . ..+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln--C~~~~-~~~~pC------~~C~-~---~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN--CSHKT-DLLEPC------QECI-E---NVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc--ccccC-CCCCch------hHHH-H---hhc
Confidence 458999999999999998874567788999999999999999988761 11100 000000 0000 0 001
Q ss_pred CCCCCc-----ccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEc-CcHH
Q 038105 129 LYTDSW-----KDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTT-RFVD 195 (791)
Q Consensus 129 ~~~~~~-----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTt-R~~~ 195 (791)
...+.. .....++ ++.+.+.+ .+++-++|+|+++... .+..+...+.. .+..+.+|++| +...
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE---PP~~tifILaTte~~K 160 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE---PPKHVIFILATTEVHK 160 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc---CCCceEEEEEcCChhh
Confidence 000000 0011222 22232322 2455688999997552 34444444443 33445555544 4333
Q ss_pred HHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 038105 196 VCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIG 257 (791)
Q Consensus 196 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 257 (791)
+... ......+++.+++.++..+.+...+...+...+ .+.+..+++.++|.+. |+..+.
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3322 234468999999999999999887654442222 5668889999999775 444333
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=5.6e-06 Score=89.86 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=108.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-------------------CEEEEEE
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-------------------DYVIWVV 109 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-------------------~~~~wv~ 109 (791)
.+++|.+..++.+..++..+.-.+.+.++|+.|+||||+|+.+++.+.-..... ..+++++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~ 96 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEID 96 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEee
Confidence 468999999999999998763456788999999999999999988762110000 0111121
Q ss_pred eCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCC
Q 038105 110 VSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSP 182 (791)
Q Consensus 110 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~ 182 (791)
.....+ .++.. .+.+.+ ...+-++|+|+++... ..+.+...+.. ..
T Consensus 97 g~~~~g-----------------------id~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe---p~ 149 (451)
T PRK06305 97 GASHRG-----------------------IEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE---PP 149 (451)
T ss_pred ccccCC-----------------------HHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc---CC
Confidence 111111 11111 111111 2456688999997552 23344444444 33
Q ss_pred CCcEEEEEcCc-HHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 038105 183 KNSAVVFTTRF-VDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITI 256 (791)
Q Consensus 183 ~~~~iivTtR~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 256 (791)
....+|++|.. ..+... ......+++.++++++..+.+.+.+...+... .++.++.+++.++|.+. |+..+
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45666666543 222221 23345799999999999999988765443222 25678899999999764 43333
No 106
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=5.3e-06 Score=92.60 Aligned_cols=191 Identities=12% Similarity=0.155 Sum_probs=108.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEE-----EeCCccCHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWV-----VVSKDLQLEKIQETI 123 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv-----~~~~~~~~~~~~~~i 123 (791)
.++||-+..++.|.+.+..+.-.+.+.++|+.|+||||+|+.+++.+- .....+...|. .+..-.+. ..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC----~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESC----RDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHH----HHH
Confidence 458999999999999998763456688999999999999999988761 11111000011 01111000 111
Q ss_pred HHHhCCCCCCc---ccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEc-C
Q 038105 124 GKKIGLYTDSW---KDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTT-R 192 (791)
Q Consensus 124 ~~~l~~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTt-R 192 (791)
...-......+ .....++... +.+.+ .+.+=++|+|+++.... .+.+...+.. ....+.+|++| +
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe---Pp~~tv~IL~t~~ 166 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE---PPPHAIFIFATTE 166 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC---CCCCeEEEEEeCC
Confidence 00000000000 0111233322 22222 23344789999976633 4445555544 33445555544 4
Q ss_pred cHHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 193 FVDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 193 ~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
...+... ......+++.+++.++....+.+.+...+...+ .+.++.+++.++|...
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHH
Confidence 3333322 344568999999999999998887654332222 6778899999999664
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=9.7e-06 Score=88.56 Aligned_cols=179 Identities=14% Similarity=0.179 Sum_probs=109.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCC-CC-----------------CCCEEEEEEe
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PT-----------------DFDYVIWVVV 110 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~~-----------------~f~~~~wv~~ 110 (791)
..++|-+..++.+..++..+.-.+...++|+.|+||||+|+.++..+--. .. .+..+++++.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 45899999999999999886445667789999999999999998875210 00 0111222222
Q ss_pred CCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCCC
Q 038105 111 SKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPK 183 (791)
Q Consensus 111 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~ 183 (791)
+.. ...++ ++.+.+.. .+++-++|+|+++... ..+.+...+.. ...
T Consensus 96 as~-----------------------~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe---pp~ 148 (486)
T PRK14953 96 ASN-----------------------RGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE---PPP 148 (486)
T ss_pred ccC-----------------------CCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc---CCC
Confidence 111 11111 11222222 2455699999997552 23444444443 333
Q ss_pred CcEEEEEc-CcHHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 184 NSAVVFTT-RFVDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 184 ~~~iivTt-R~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
...+|++| +...+... ......+++.+++.++..+.+.+.+...+... ..+.+..+++.++|.+..+....
T Consensus 149 ~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45555544 43333221 23345799999999999999998876554322 25678889999999876444433
No 108
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=3.1e-07 Score=69.43 Aligned_cols=58 Identities=38% Similarity=0.564 Sum_probs=30.5
Q ss_pred CccEEEecCCCCcccchhhhccCCcccEEeecCcccccccc-ccccCcccccEEecCCCc
Q 038105 435 HLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLP-MGISKLVSLQLLDISNTE 493 (791)
Q Consensus 435 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 493 (791)
+|++|++++|.+..+++..|.++++|++|++++| .+..+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555555555555555555555555 333333 245555555555555554
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=8.1e-06 Score=92.09 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=111.6
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.++||.+..++.|..++..+.-.+.+.++|+.|+||||+|+.+++.+. ....... +-.++ .......+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~~--~~~c~----~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDPK--GRPCG----TCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC--CCCCc----cCHHHHHHhcCCC
Confidence 468999999999999988763456678999999999999999998762 0000000 00000 1112222222111
Q ss_pred CCC---CCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-HHH
Q 038105 129 LYT---DSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-DVC 197 (791)
Q Consensus 129 ~~~---~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~ 197 (791)
... ........++. +.+.+.+. .++-++|||+++... ..+.+...+.. ....+.+|+++.+. .+.
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe---pp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE---PPPHAIFILATTEVHKVP 164 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc---CCCCeEEEEEeCChhhhh
Confidence 100 00001122222 22223222 345689999997653 34445444443 33456666655432 232
Q ss_pred hh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 198 GR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 198 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
.. ......+++.+++.++....+...+...+...+ .+.+..+++.++|.+..+...
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 223457899999999999999888765443222 567889999999988644433
No 110
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=2.4e-08 Score=100.41 Aligned_cols=282 Identities=15% Similarity=0.119 Sum_probs=131.7
Q ss_pred ceeEEEcccCCCCCCCC----CCCCCCccEEEecCCC-Ccccch-hhhccCCcccEEeecCcccccccc--ccccCcccc
Q 038105 413 MVRRLSLMRNSIDNLPT----VPTCPHLLTLFLNDNE-LTTITD-DFFQSMPCLTVLKMSDIRMLQQLP--MGISKLVSL 484 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~----~~~l~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~~~~lp--~~~~~l~~L 484 (791)
.++.|++.++.-..... ...+++++.|.+.+|. +++... .+-..+++|++|++..|..++... .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 44555665554332221 2567777777777776 222211 222457777777777765554321 123456777
Q ss_pred cEEecCCC-ccc--ccchhhhcCCCCceeeccCcccccccchhHh----hcCcCCCeeeeeecCccccccccccchhchH
Q 038105 485 QLLDISNT-EVE--ELPEELKALVNLKCLNLDWTDVLVEVPQQLL----SNFSRLRVLRMFATGIRSVYGRFSSWYENVA 557 (791)
Q Consensus 485 ~~L~L~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 557 (791)
++|++++| .++ .+..-...+.++..+.+++|. +.+...+ +.+..+.++++..|..-+ .+.+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lT--------D~~~~ 287 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLT--------DEDLW 287 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhcccc--------chHHH
Confidence 77777776 333 222234455556666666652 2222111 334445555555553211 01122
Q ss_pred HHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCccccccc-ccccccceEEecccCCCCceeeccc
Q 038105 558 EELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADL-ANLEQLNTLYFRSCGWSGGLKIDYK 636 (791)
Q Consensus 558 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~ 636 (791)
..=..+..|+.|+.+++.......+.....-...++.+.+..|...+..-...+ .+.++|+.+++..|......
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~----- 362 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG----- 362 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-----
Confidence 222334556666665554433222222222223333344443333222211112 23455666666555432210
Q ss_pred ccccccccccccCCCCEEEEecCCCcccc--cchh----cCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcc
Q 038105 637 DMVQKSRQPYVFRSLDKITVSSCRNLKHL--TFLV----FAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAK 710 (791)
Q Consensus 637 ~~~~l~~l~~~~~~L~~L~l~~~~~L~~l--~~l~----~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~ 710 (791)
.+..+...++.|+.+.++.|...++. ..+. ....|..+.+++|+.+++-.+. .....++
T Consensus 363 ---tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le------------~l~~c~~ 427 (483)
T KOG4341|consen 363 ---TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE------------HLSICRN 427 (483)
T ss_pred ---hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH------------HHhhCcc
Confidence 12233445566666666655544443 2222 2344566666666655554331 2233456
Q ss_pred cceeccccccccccc
Q 038105 711 LQHLELWGLKSLKSI 725 (791)
Q Consensus 711 L~~L~l~~~~~l~~~ 725 (791)
|+.+.+.+|.....-
T Consensus 428 Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 428 LERIELIDCQDVTKE 442 (483)
T ss_pred cceeeeechhhhhhh
Confidence 666666666554433
No 111
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.6e-07 Score=92.55 Aligned_cols=191 Identities=18% Similarity=0.188 Sum_probs=90.7
Q ss_pred CCCCccEEEecCCCCccc----chhhhccCCcccEEeecCcccc----cccccc-------ccCcccccEEecCCCccc-
Q 038105 432 TCPHLLTLFLNDNELTTI----TDDFFQSMPCLTVLKMSDIRML----QQLPMG-------ISKLVSLQLLDISNTEVE- 495 (791)
Q Consensus 432 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~lp~~-------~~~l~~L~~L~L~~~~l~- 495 (791)
.+..++.+++++|.+..- ....+.+.+.|+..++++- .. ..+|+. +-.+++|++||||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 344555555555554321 1222445556666666553 11 122322 223456666666666443
Q ss_pred c----cchhhhcCCCCceeeccCcccccccchhH-------------hhcCcCCCeeeeeecCccccccccccchhchHH
Q 038105 496 E----LPEELKALVNLKCLNLDWTDVLVEVPQQL-------------LSNFSRLRVLRMFATGIRSVYGRFSSWYENVAE 558 (791)
Q Consensus 496 ~----lp~~~~~l~~L~~L~l~~~~~~~~~p~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 558 (791)
. +-.-+.++.+|++|+|.+|-+ +...... .++-++|+++....|.+... ....+..
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~------ga~~~A~ 179 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG------GATALAE 179 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc------cHHHHHH
Confidence 1 112245566666666666643 2111110 23345566666665554331 1123445
Q ss_pred HhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccc
Q 038105 559 ELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDM 638 (791)
Q Consensus 559 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 638 (791)
.|..++.|+.+.+..|.+..-. . ......+..+++|+.|+|..|.++..-...
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG----------------------~-~al~eal~~~~~LevLdl~DNtft~egs~~---- 232 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEG----------------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSVA---- 232 (382)
T ss_pred HHHhccccceEEEecccccCch----------------------h-HHHHHHHHhCCcceeeecccchhhhHHHHH----
Confidence 5566666666666666553210 0 011234566777777777777665421111
Q ss_pred ccccccccccCCCCEEEEecC
Q 038105 639 VQKSRQPYVFRSLDKITVSSC 659 (791)
Q Consensus 639 ~~l~~l~~~~~~L~~L~l~~~ 659 (791)
+.....++++|+.|.+.+|
T Consensus 233 --LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 233 --LAKALSSWPHLRELNLGDC 251 (382)
T ss_pred --HHHHhcccchheeeccccc
Confidence 1122234455666666555
No 112
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.3e-07 Score=70.19 Aligned_cols=56 Identities=32% Similarity=0.516 Sum_probs=26.1
Q ss_pred cccEEeecCccccccccc-cccCcccccEEecCCCcccccch-hhhcCCCCceeeccCc
Q 038105 459 CLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWT 515 (791)
Q Consensus 459 ~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~ 515 (791)
+|++|++++| .+..+|. .|..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3445555554 3444432 34445555555555554444432 2444445555554444
No 113
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.38 E-value=4.2e-08 Score=98.78 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=49.6
Q ss_pred ccCCCCEEEEecCCCccccc--chh-cCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceeccccccccc
Q 038105 647 VFRSLDKITVSSCRNLKHLT--FLV-FAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLK 723 (791)
Q Consensus 647 ~~~~L~~L~l~~~~~L~~l~--~l~-~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~ 723 (791)
...+|+.+.+.+|.++.+.. .++ ..+.|+.+++..|....+-.+. ......+.|+.|.+++|...+
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~-----------sls~~C~~lr~lslshce~it 386 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLA-----------SLSRNCPRLRVLSLSHCELIT 386 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHh-----------hhccCCchhccCChhhhhhhh
Confidence 34556666666665544422 222 2344555555555433322110 122345566666666665444
Q ss_pred cc-----ccCCCCCCCccEEEEcCCCCCCCCCCCCCC--CCCccEEEEcch
Q 038105 724 SI-----YWKPLPLPRLKELEVEDCHSLKKLPLDSNS--AKGRRILIRGDE 767 (791)
Q Consensus 724 ~~-----~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~--~~~~~~~i~~~~ 767 (791)
.. ......+..|+.+++.+||.++.=-+.++. -.++.+++.+|.
T Consensus 387 D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 387 DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 33 112233455666666666655443322221 123445555554
No 114
>PLN03150 hypothetical protein; Provisional
Probab=98.38 E-value=5.8e-07 Score=102.27 Aligned_cols=107 Identities=22% Similarity=0.380 Sum_probs=88.2
Q ss_pred cccEEeecCccccccccccccCcccccEEecCCCccc-ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeee
Q 038105 459 CLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRM 537 (791)
Q Consensus 459 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 537 (791)
.++.|+|++|...+.+|..++.+++|+.|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788899998666788989999999999999999987 78888999999999999999988888876 789999999999
Q ss_pred eecCccccccccccchhchHHHhcCC-CCCcEEEEEeech
Q 038105 538 FATGIRSVYGRFSSWYENVAEELLGL-KHLEVLEITFRSF 576 (791)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 576 (791)
++|.+++ .+|..++.+ .++..+++.+|..
T Consensus 498 s~N~l~g----------~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSG----------RVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccc----------cCChHHhhccccCceEEecCCcc
Confidence 9998665 366666553 4566777776654
No 115
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=9.7e-06 Score=91.11 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCC--------------------CCCCCEEEEE
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN--------------------PTDFDYVIWV 108 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~--------------------~~~f~~~~wv 108 (791)
.+++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++..+--. ..+|+ +..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEe
Confidence 45899999999999999887445668899999999999999998865200 01122 2222
Q ss_pred EeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcE
Q 038105 109 VVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSA 186 (791)
Q Consensus 109 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~ 186 (791)
+.....+..++.. +..++... - ..+++=++|+|+++... ..+.+...+.. ....+.
T Consensus 96 d~~~~~~vd~Ir~-li~~~~~~-----------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEe---pp~~ti 153 (614)
T PRK14971 96 DAASNNSVDDIRN-LIEQVRIP-----------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE---PPSYAI 153 (614)
T ss_pred cccccCCHHHHHH-HHHHHhhC-----------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhC---CCCCeE
Confidence 2222212222111 11111100 0 11234478999997653 34455555554 344566
Q ss_pred EEEEc-CcHHHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 187 VVFTT-RFVDVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 187 iivTt-R~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
+|++| +...+... .+....+++.++++++....+.+.+...+...+ .+.+..|++.++|...-+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 65544 43334322 234567999999999999999887765543222 567889999999977533
No 116
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.37 E-value=7.7e-06 Score=87.45 Aligned_cols=171 Identities=16% Similarity=0.223 Sum_probs=99.8
Q ss_pred cccchHHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~---~---------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|++..++++.+.+.. . ..++.|.++|++|+|||++|+++++.. ... |+.+.. .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~----~ 199 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG----S 199 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----H
Confidence 467999999999987632 0 245779999999999999999999876 222 222211 1
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcc------------ccc-ccccCC---CCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERV------------DLK-KVGVPL---PSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------------~~~-~~~~~l---~~~~~ 180 (791)
.+.... .+........+.+.. ...+.+|+||+++... ... .+...+ ....
T Consensus 200 ----~l~~~~--------~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~- 266 (389)
T PRK03992 200 ----ELVQKF--------IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD- 266 (389)
T ss_pred ----HHhHhh--------ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC-
Confidence 111111 011122333333333 3467899999997531 000 111111 1110
Q ss_pred CCCCcEEEEEcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 181 SPKNSAVVFTTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
...+..||.||....... ....+..+++.+.+.++..++|..+.......... ....+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCC
Confidence 223566777776443322 11234679999999999999999887654422222 245667777775
No 117
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=5.8e-07 Score=91.57 Aligned_cols=291 Identities=20% Similarity=0.178 Sum_probs=182.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
..+.|.++|.|||||||++-++.+ . ...| +.++++.+.+-.+...+.-.+...++.... +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 358999999999999999999988 4 3344 478888888888888888888888887542 12233446667
Q ss_pred HhCCceEEEEEcCccCcccc-cccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEeccCChH-HHHHHHHHHhCc
Q 038105 149 TLSKKKFALLLDDLWERVDL-KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKVACLSDE-DAWELFREKVGE 226 (791)
Q Consensus 149 ~l~~~~~LlVlDdv~~~~~~-~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~-e~~~l~~~~~~~ 226 (791)
+..+++.++|+||.....+- ..+...+.. ....-.++.|+|+.. .......+.+.+++.. ++.++|...+..
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~---~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~ 157 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLG---ACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVL 157 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHc---cchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHH
Confidence 77889999999999654221 111122222 344456788888643 2345567778888864 788887776632
Q ss_pred cc--cCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHH----HHHHHHhhhccccCCCchhhhhhhhhcccC
Q 038105 227 ET--IESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWR----YAIEVLRRSASEFEGLGKEVYPLLKFSYDC 300 (791)
Q Consensus 227 ~~--~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~----~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~ 300 (791)
.. ..........+.+|....+|.|++|..+++..+. ..+.... .....+.........-+......+..||--
T Consensus 158 ~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s-l~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 158 VALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS-LSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred hccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh-cCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHh
Confidence 22 1122223567889999999999999999988876 2332222 222222222111111123567788899999
Q ss_pred CCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCcccccccchhhhhHHHHHHHHHhcccccc---cCCcEEechHHHH
Q 038105 301 LPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQGYHIVTTLVRACLLEEV---EDDQVKMHDVIRD 377 (791)
Q Consensus 301 L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~~h~li~~ 377 (791)
|.. -.+..|--++.|...+.... ..|.+-|-.. ....-.+...+..+++.++.... +...++.-+..+.
T Consensus 237 Ltg-we~~~~~rLa~~~g~f~~~l----~~~~a~g~~~---~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~ 308 (414)
T COG3903 237 LTG-WERALFGRLAVFVGGFDLGL----ALAVAAGADV---DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRR 308 (414)
T ss_pred hhh-HHHHHhcchhhhhhhhcccH----HHHHhcCCcc---ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHH
Confidence 988 78888988988877665442 2233322111 11223344446677777776543 3334555555555
Q ss_pred HHHHHHh
Q 038105 378 MALWITC 384 (791)
Q Consensus 378 ~~~~~~~ 384 (791)
|+..+-.
T Consensus 309 YalaeL~ 315 (414)
T COG3903 309 YALAELH 315 (414)
T ss_pred HHHHHHH
Confidence 5544443
No 118
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.35 E-value=2.8e-05 Score=77.28 Aligned_cols=200 Identities=17% Similarity=0.157 Sum_probs=120.3
Q ss_pred CCcccchH---HHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC---CCEEEEEEeCCccCHHHH
Q 038105 48 EPTVVGLQ---SQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 48 ~~~~vGR~---~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~ 119 (791)
++..||-. +.+++|.+++... .+.+.+.|+|.+|.|||+++++++..+....+. --.|+.|.....++...+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 44556643 3455555656543 467899999999999999999999876432211 125888889999999999
Q ss_pred HHHHHHHhCCCCCCcccccHHHHHHHHHHHhCC-ceEEEEEcCccCc---------ccccccccCCCCCCCCCCCcEEEE
Q 038105 120 QETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSK-KKFALLLDDLWER---------VDLKKVGVPLPSRSNSPKNSAVVF 189 (791)
Q Consensus 120 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~---------~~~~~~~~~l~~~~~~~~~~~iiv 189 (791)
+..|+..++.+... ............+.++. +.=+||||++.+. ..+..+ ..+.. .-.-+-|.+
T Consensus 113 Y~~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~N---eL~ipiV~v 186 (302)
T PF05621_consen 113 YSAILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGN---ELQIPIVGV 186 (302)
T ss_pred HHHHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhh---ccCCCeEEe
Confidence 99999999987532 23344444455555543 4458999999763 111111 11211 222355677
Q ss_pred EcCcHHHHhhc-----cccceEEeccCCh-HHHHHHHHHHhCcccc--CCCCChHHHHHHHHHHcCCCchHH
Q 038105 190 TTRFVDVCGRM-----EDRRMFKVACLSD-EDAWELFREKVGEETI--ESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 190 TtR~~~~~~~~-----~~~~~~~l~~l~~-~e~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
-|++...+-.. ....++.+..... ++...|+......-.. .+.-...+.+..|.+.++|+.=-+
T Consensus 187 Gt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 187 GTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred ccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 77643221111 1234566666664 3455555443221111 122234678999999999987433
No 119
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=6.3e-06 Score=89.43 Aligned_cols=168 Identities=11% Similarity=0.092 Sum_probs=104.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.|+|..|+|||+|++++++.+.. ......++++++ .++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~------~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSG------DEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 356899999999999999999987622 122235566654 34555555554311 01223444444
Q ss_pred CCceEEEEEcCccCccc----ccccccCCCCCCCCCCCcEEEEEcCc-H--------HHHhhccccceEEeccCChHHHH
Q 038105 151 SKKKFALLLDDLWERVD----LKKVGVPLPSRSNSPKNSAVVFTTRF-V--------DVCGRMEDRRMFKVACLSDEDAW 217 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~~~iivTtR~-~--------~~~~~~~~~~~~~l~~l~~~e~~ 217 (791)
++ .-+||+||+..... .+.+...+... ...+..||+|+.. + .+..++...-++.+++++.++..
T Consensus 205 ~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~--~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 CQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNF--IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred cc-CCEEEEeccccccCCHHHHHHHHHHHHHH--HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 43 34788999964321 12222222221 2334568888753 2 22233445668899999999999
Q ss_pred HHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 038105 218 ELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGR 258 (791)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 258 (791)
+++.+.+...+.. ..-.++.++-|++.++|.|..+..+..
T Consensus 282 ~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9999988654421 123367889999999999987766553
No 120
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.8e-05 Score=87.82 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=111.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.+++|-+..+++|..++..+.-.+.+.++|+.|+||||+|+.+++.+--. ..... ..+..-.+. ..+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCC---CCCccchHH----HHHHcCCC
Confidence 45899999999999999887456678899999999999999999876211 00000 000000000 11111000
Q ss_pred CCC---CCcccccHHHHHHHH---HH-HhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-HHHh
Q 038105 129 LYT---DSWKDKRLEEKAQDI---FK-TLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCG 198 (791)
Q Consensus 129 ~~~---~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~ 198 (791)
... +.......++..+.. .. -..+++-++|+|+++... ..+.+...+.. .+....+|++|.+. .+..
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe---pp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE---PPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc---CCCCEEEEEecCChHHhHH
Confidence 000 000011222222211 11 113455688999997653 34455555544 44556666665432 3322
Q ss_pred h-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 199 R-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 199 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
. ......+++.+++.++..+.+.+.+...+... .++.+..|++.++|.+..+..
T Consensus 165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2 23345789999999999999988775544222 267788899999998854433
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.7e-05 Score=89.21 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=110.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++|.+..++.|..++..+.-.+.+.++|+.|+||||+|+.++..+- +........-.+. .-.....+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~~~~Cg----~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPTPEPCG----KCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCCCCCCc----ccHHHHHHhcCCC
Confidence 458999999999999998764457889999999999999999998862 1111100000010 0111122211111
Q ss_pred CCC---CCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-HHH
Q 038105 129 LYT---DSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-DVC 197 (791)
Q Consensus 129 ~~~---~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~ 197 (791)
... ........++. +.+.+.+. +++-++|||+++... ....+...+.. ......+|++|.+. .+.
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe---Pp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE---PPPRVVFVLATTDPQRVL 165 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc---CCcCeEEEEEeCChhhhh
Confidence 000 00011122222 22222222 344588999998653 34445444443 33445555555433 222
Q ss_pred hh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 198 GR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 198 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
.. ......+++..++.++..+.+...+...+.... .+.+..+++.++|.+..+..+
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 21 233457889999999998888877655432222 466889999999988644433
No 122
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.33 E-value=1.2e-06 Score=86.47 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=65.4
Q ss_pred HHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCCCCccc---
Q 038105 62 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKD--- 136 (791)
Q Consensus 62 ~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~--- 136 (791)
++.+..=+....++|+|++|+|||||++++++... ..+|+.++|+.+... .+..++++.+...+-...-+...
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~ 84 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERH 84 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHH
Confidence 33443323557899999999999999999999873 237899999986665 68899999983332211110000
Q ss_pred -ccHHHHHHHHHHH-hCCceEEEEEcCccCc
Q 038105 137 -KRLEEKAQDIFKT-LSKKKFALLLDDLWER 165 (791)
Q Consensus 137 -~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~ 165 (791)
.......+....+ -.++++++++|++...
T Consensus 85 ~~~~~~~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 85 VQVAEMVLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHh
Confidence 1111222222222 2478999999999544
No 123
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=2.2e-05 Score=87.61 Aligned_cols=190 Identities=16% Similarity=0.132 Sum_probs=107.2
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
=.+++|.+..++.+..++..+.-.+...++|+.|+||||+|+.++..+-- ...-+.. .+..- .....+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c-~~~~~~~---pC~~C----~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNC-LNPPDGE---PCNEC----EICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCCC---CCCcc----HHHHHHhcCC
Confidence 35689999999999999988745677788999999999999999887521 1100000 00000 0111111100
Q ss_pred CCCCCCc---ccccHHHHHHHHHHHh-----CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEc-CcHHH
Q 038105 128 GLYTDSW---KDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTT-RFVDV 196 (791)
Q Consensus 128 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTt-R~~~~ 196 (791)
....-.. .....++ ++.+.+.. .++.-++|||+++... .+..+...+.. ......+|++| ....+
T Consensus 87 ~~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe---pp~~~ifIlatt~~~ki 162 (559)
T PRK05563 87 LMDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE---PPAHVIFILATTEPHKI 162 (559)
T ss_pred CCCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC---CCCCeEEEEEeCChhhC
Confidence 0000000 0111222 22222222 3455688999997653 34444444443 33445555544 33333
Q ss_pred Hhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 197 CGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 197 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
... .+....+++.+++.++..+.+...+...+...+ .+.+..|+..++|.+..
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRD 216 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 221 233457899999999999999887765442222 56778889999988753
No 124
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.31 E-value=1.1e-08 Score=109.47 Aligned_cols=158 Identities=19% Similarity=0.275 Sum_probs=87.9
Q ss_pred CCCccCccceeEEEcccCCCCCCCCCCCC-CCccEEEecCCC--C----cccchhhh--ccCCcccEEeecCcccccccc
Q 038105 405 PADVRGWEMVRRLSLMRNSIDNLPTVPTC-PHLLTLFLNDNE--L----TTITDDFF--QSMPCLTVLKMSDIRMLQQLP 475 (791)
Q Consensus 405 ~~~~~~~~~l~~l~l~~~~~~~l~~~~~l-~~L~~L~l~~~~--~----~~~~~~~~--~~l~~L~~L~l~~~~~~~~lp 475 (791)
|-++..++.||+|-+.++.+..+..+..+ ..|++|...... + ..-..++- .....|...+.++| .+..+-
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD 180 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMD 180 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHH
Confidence 44566778999999999887654322211 233333333221 0 00000000 01234555666666 555566
Q ss_pred ccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhc
Q 038105 476 MGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYEN 555 (791)
Q Consensus 476 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 555 (791)
+++.-++.|+.|||++|++.... .+..|+.|++|||++|.+ ..+|.-...+|. |+.|++.+|.++++
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~-L~~L~lrnN~l~tL---------- 247 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCK-LQLLNLRNNALTTL---------- 247 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh-ccccccchhhhh-heeeeecccHHHhh----------
Confidence 66666677777777777666554 566667777777777665 555542223343 67777777665543
Q ss_pred hHHHhcCCCCCcEEEEEeechhh
Q 038105 556 VAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 556 ~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
..+.+|++|+.||+++|-+..
T Consensus 248 --~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 248 --RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred --hhHHhhhhhhccchhHhhhhc
Confidence 335566667777776665544
No 125
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.2e-08 Score=93.58 Aligned_cols=185 Identities=20% Similarity=0.182 Sum_probs=119.7
Q ss_pred CcccEEeecCccccc-cccccccCcccccEEecCCCccc-ccchhhhcCCCCceeeccCcccccccc-hhHhhcCcCCCe
Q 038105 458 PCLTVLKMSDIRMLQ-QLPMGISKLVSLQLLDISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVP-QQLLSNFSRLRV 534 (791)
Q Consensus 458 ~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~~l~~L~~ 534 (791)
..|++|||++..... .+...++.|..|+.|.|.++++. .+...+.+-.+|+.|+++.|.-.+... .-++.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 369999999873322 34445778999999999999887 566778888999999999997544443 334689999999
Q ss_pred eeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccc
Q 038105 535 LRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANL 614 (791)
Q Consensus 535 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l 614 (791)
|+++.|..+... ...+...++ .+|..|+++++.-.-...-.+ .-...+
T Consensus 265 LNlsWc~l~~~~------Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~------------------------tL~~rc 312 (419)
T KOG2120|consen 265 LNLSWCFLFTEK------VTVAVAHIS--ETLTQLNLSGYRRNLQKSHLS------------------------TLVRRC 312 (419)
T ss_pred cCchHhhccchh------hhHHHhhhc--hhhhhhhhhhhHhhhhhhHHH------------------------HHHHhC
Confidence 999999865411 111222222 467778877653221110000 112457
Q ss_pred cccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcc--cccchhcCCCCceEEEccCc
Q 038105 615 EQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLK--HLTFLVFAPNLKSISVTHCD 683 (791)
Q Consensus 615 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~--~l~~l~~~~nL~~L~l~~c~ 683 (791)
++|.+|+|+.|..... ..+. ....|+.|++|.++.|..+. .+-.+...|.|.+|++.+|-
T Consensus 313 p~l~~LDLSD~v~l~~--~~~~-------~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKN--DCFQ-------EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CceeeeccccccccCc--hHHH-------HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8888888888765441 1111 11247778888888887653 23345667777777777764
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=1e-05 Score=91.29 Aligned_cols=203 Identities=14% Similarity=0.068 Sum_probs=106.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CC-CEEEEE--EeCCc-cCHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DF-DYVIWV--VVSKD-LQLEKIQETI 123 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~f-~~~~wv--~~~~~-~~~~~~~~~i 123 (791)
+.++|++..+.++.+.+... ....+.|+|++|+||||+|+.+++....... .| ...-|+ ++... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 45899999999998887644 5668999999999999999999776521111 11 112233 32211 1122221111
Q ss_pred ---------------HHHhCCCC----------------CCcccccHHHHHHHHHHHhCCceEEEEEcCccCc--ccccc
Q 038105 124 ---------------GKKIGLYT----------------DSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER--VDLKK 170 (791)
Q Consensus 124 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~ 170 (791)
+...+... +.. ..-.......+.+.+.++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi-~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEI-GELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecc-ccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111100 000 001122355666666666666665555432 23444
Q ss_pred cccCCCCCCCCCCCcEEEE--EcCcHHHHh-h-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHc
Q 038105 171 VGVPLPSRSNSPKNSAVVF--TTRFVDVCG-R-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKEC 246 (791)
Q Consensus 171 ~~~~l~~~~~~~~~~~iiv--TtR~~~~~~-~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 246 (791)
+...+.. ..+...+++ ||++..... . ......+.+.+++.++.++++.+.+....... .++..+.|.+.+
T Consensus 312 ik~~~~~---~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys 385 (615)
T TIGR02903 312 IKKLFEE---GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYT 385 (615)
T ss_pred hhhhccc---CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCC
Confidence 4433433 233334444 566443211 1 11234678999999999999999876433111 134444555544
Q ss_pred CCCchHHHHHHHH
Q 038105 247 DGLPLALITIGRA 259 (791)
Q Consensus 247 ~g~Plal~~~~~~ 259 (791)
..-+.++..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 4335555544433
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.29 E-value=1.4e-05 Score=80.29 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=109.5
Q ss_pred CCcccchHHHHHHHHHHhccCCC--ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPA--AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~--~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
++.|.+|+.+++.+..++-+++. +..|.|+|.+|.|||.+.+++.+.. . ...+|+++-.-++.+.+.+.|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n---~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---N---LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---C---CcceeeehHHhccHHHHHHHHHH
Confidence 57789999999999999987533 4567999999999999999998876 1 23579999999999999999999
Q ss_pred HhCCCCCCcc-c-c---cHHHHHHHHHH--HhC--CceEEEEEcCccCccccccccc--CCCCCCCCCCCcEEEEEcCcH
Q 038105 126 KIGLYTDSWK-D-K---RLEEKAQDIFK--TLS--KKKFALLLDDLWERVDLKKVGV--PLPSRSNSPKNSAVVFTTRFV 194 (791)
Q Consensus 126 ~l~~~~~~~~-~-~---~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~~--~l~~~~~~~~~~~iivTtR~~ 194 (791)
+.+....+.. . . .....+..+.+ ... ++.++||+|+++...+.+.+.. .+......+....+|+++-..
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 9963322111 1 1 11122223333 112 4589999999987655443210 000000012224445544322
Q ss_pred ---HHHhhcc--ccceEEeccCChHHHHHHHHHHh
Q 038105 195 ---DVCGRME--DRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 195 ---~~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
....+.+ ...++.+...+.+|..+++.+.-
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1122122 23467888999999999987653
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.26 E-value=2.5e-06 Score=82.98 Aligned_cols=190 Identities=15% Similarity=0.170 Sum_probs=118.3
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
-.+++|-+..+.-|...+... ..++...+||.|.|||+-|++++..+ ...+-|. .++=.+++...+..-+-..+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~-~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki--- 109 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR-ILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI--- 109 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc-CCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh---
Confidence 456899999999999999884 78999999999999999999998887 2233444 33334444433322111111
Q ss_pred hCCCCCCcccccHHHHHHHH---HHHhCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcHHH-Hhh-
Q 038105 127 IGLYTDSWKDKRLEEKAQDI---FKTLSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV-CGR- 199 (791)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~l---~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~-~~~- 199 (791)
.+........ ...-...--.+|||+++.+ +.|..+...+.. ....+++|+.+-..+. ...
T Consensus 110 ----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~---~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 110 ----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED---FSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred ----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc---cccceEEEEEcCChhhCChHH
Confidence 0001100000 0000112258899999876 446666655655 4556666555443222 111
Q ss_pred ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHHHH
Q 038105 200 MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITIGR 258 (791)
Q Consensus 200 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 258 (791)
.+....+..++|.+++..+-+...+...++..+ .+..+.|++.++|- --|+.++-+
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 123346899999999999999888877665444 67788899999884 445544443
No 129
>PRK06620 hypothetical protein; Validated
Probab=98.26 E-value=1e-05 Score=78.61 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=92.5
Q ss_pred CCcccch-HHHHHHHHHHhccCC--C--ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 48 EPTVVGL-QSQLEQVWRCLVQEP--A--AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 48 ~~~~vGR-~~~~~~l~~~L~~~~--~--~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
+..+||. ....-+....+.+.. . .+.+.|+|+.|+|||+|++.+++.. .. .++.....
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~~~~--------- 78 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKDIFF--------- 78 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcchhhh---------
Confidence 4456776 333333333333221 1 2679999999999999999987764 11 22110000
Q ss_pred HHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHH-------
Q 038105 123 IGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVD------- 195 (791)
Q Consensus 123 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~------- 195 (791)
. . +..+ ..-++++||++...+ ..+...+... ...|..+|+|++.+.
T Consensus 79 -------------~---~-------~~~~-~~d~lliDdi~~~~~-~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~ 131 (214)
T PRK06620 79 -------------N---E-------EILE-KYNAFIIEDIENWQE-PALLHIFNII--NEKQKYLLLTSSDKSRNFTLPD 131 (214)
T ss_pred -------------c---h-------hHHh-cCCEEEEeccccchH-HHHHHHHHHH--HhcCCEEEEEcCCCccccchHH
Confidence 0 0 0111 224688899974322 1121111110 134667888887322
Q ss_pred HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 196 VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 196 ~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
...++....+++++++++++-.+++.+.+...+...+ ++.++-|++.+.|.-..+.-
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS---RQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHH
Confidence 2233444568999999999999999888765443333 67788888888776554433
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.26 E-value=3.7e-05 Score=73.84 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=40.6
Q ss_pred CCCcccchHHHHHHHHHHh---ccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 47 TEPTVVGLQSQLEQVWRCL---VQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 47 ~~~~~vGR~~~~~~l~~~L---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.-+.++|.|.+.+++++-. ..+.....|.+||..|+|||++++++.+.+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 3567999999999988753 334467788999999999999999999988
No 131
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.9e-05 Score=88.68 Aligned_cols=194 Identities=13% Similarity=0.126 Sum_probs=108.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.++||.+..++.|...+..+.-.+.+.++|+.|+||||+|+.++..+-- ...... -.+..- .....+...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~---~~c~~c----~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA---EPCNVC----PPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC---CCCCcc----HHHHHHhcCCC
Confidence 4689999999999999987744566789999999999999999887621 111000 000000 00000000000
Q ss_pred CCC---CCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEc-CcHHHH
Q 038105 129 LYT---DSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTT-RFVDVC 197 (791)
Q Consensus 129 ~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTt-R~~~~~ 197 (791)
... +.......++ ++.+.+.+ ..+.=++|||+++.... ...+...+.. ....+.+|++| ....+.
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe---pp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE---PPPHVKFIFATTEPHKVP 163 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc---CCCCeEEEEEeCChhhhh
Confidence 000 0000111112 12222222 23345788999976532 4445444444 34455665544 433343
Q ss_pred hh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc-hHHHHHH
Q 038105 198 GR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP-LALITIG 257 (791)
Q Consensus 198 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 257 (791)
.. .+....+++.+++.++....+...+...+...+ ++.+..|++.++|.. .|+..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 233457899999999999888887755443222 567888999999976 4444443
No 132
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=1.5e-05 Score=86.51 Aligned_cols=182 Identities=21% Similarity=0.190 Sum_probs=105.8
Q ss_pred ccchHHHH--HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 51 VVGLQSQL--EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 51 ~vGR~~~~--~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
++|-.... ....+.....+....+.|+|+.|+|||+|++++++.+.+. ..-..++|+++ .+...++...+.
T Consensus 108 v~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~ 180 (440)
T PRK14088 108 VVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMK 180 (440)
T ss_pred ccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHh
Confidence 45744332 2333333323234569999999999999999999987321 11235777764 334444444432
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc---c-cccccCCCCCCCCCCCcEEEEEc-CcHHHH------
Q 038105 129 LYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD---L-KKVGVPLPSRSNSPKNSAVVFTT-RFVDVC------ 197 (791)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~~~~~iivTt-R~~~~~------ 197 (791)
. .... .+.+..+...-+|++||++.... . +.+...+... ...+..+|+|| +.+...
T Consensus 181 ~-------~~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l--~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 181 E-------GKLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNEL--HDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred c-------ccHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHH--HHcCCeEEEECCCCHHHHHHHHHH
Confidence 1 1122 23333334456899999974321 1 1221222110 12345688877 443322
Q ss_pred --hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 198 --GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 198 --~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
.++....++++++.+.+.-.+++.+.+.......+ ++.+..|++.+.|.-..+.-
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHhccccCHHHHHH
Confidence 22334557899999999999999998865543333 67888899998887654443
No 133
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=2.6e-07 Score=100.49 Aligned_cols=153 Identities=24% Similarity=0.392 Sum_probs=109.3
Q ss_pred CccCccceeEEEcccCCCCCCCC-CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCccccc
Q 038105 407 DVRGWEMVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQ 485 (791)
Q Consensus 407 ~~~~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 485 (791)
.+..+.++..+++.+|.+..+.. +..+++|++|++++|.+..+.. +..++.|+.|++++| .+..++ .+..+++|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 35667788888888888888887 7888888899998888877766 667777888888888 555554 566688888
Q ss_pred EEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCC
Q 038105 486 LLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK 564 (791)
Q Consensus 486 ~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 564 (791)
.+++++|.+..+... ...+.+|+.+++.+|.+ ..+.. +..+..+..+++..|.++.+.+ +..+.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i-~~i~~--~~~~~~l~~~~l~~n~i~~~~~------------l~~~~ 230 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSI-REIEG--LDLLKKLVLLSLLDNKISKLEG------------LNELV 230 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCch-hcccc--hHHHHHHHHhhcccccceeccC------------cccch
Confidence 888888888877553 57788888888888865 44433 3455566666777777655322 11122
Q ss_pred --CCcEEEEEeechhh
Q 038105 565 --HLEVLEITFRSFEA 578 (791)
Q Consensus 565 --~L~~L~l~~~~~~~ 578 (791)
+|+.+.+++|++..
T Consensus 231 ~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 231 MLHLRELYLSGNRISR 246 (414)
T ss_pred hHHHHHHhcccCcccc
Confidence 36777777776654
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.24 E-value=5.8e-06 Score=96.06 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=91.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC--C-CEEEE-EEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD--F-DYVIW-VVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~--f-~~~~w-v~~~~~~~~~~~~~~i~ 124 (791)
+.++||+++++++.+.|... ...-+.++|++|+|||++|+.+++++...... + +..+| +++ . .+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~------~----~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM------G----SLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH------H----HHh
Confidence 35899999999999999876 44567799999999999999999987322111 1 22233 221 1 111
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCccc----------ccc-cccCCCCCCCCCCCcEEEEEcC
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERVD----------LKK-VGVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~----------~~~-~~~~l~~~~~~~~~~~iivTtR 192 (791)
.... ..+..++.++.+.+.++ ..+.+|++|+++.... ... +...+.. ...++|-+|.
T Consensus 251 a~~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-----g~i~~IgaTt 319 (731)
T TIGR02639 251 AGTK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-----GKLRCIGSTT 319 (731)
T ss_pred hhcc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-----CCeEEEEecC
Confidence 1000 12234455555555553 4579999999974311 111 2222211 1234444444
Q ss_pred cHHHH-------hhccccceEEeccCChHHHHHHHHHHhC
Q 038105 193 FVDVC-------GRMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 193 ~~~~~-------~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
..+.. ........+++++++.++..+++.....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHH
Confidence 32211 0112235799999999999999987653
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.24 E-value=2.6e-05 Score=81.84 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=87.1
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
-.+++|.+...+++.+++..+.-.+.+.++|+.|+|||++|+.+++.. ... +..++++. .....+...+..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i~~~l~~-- 90 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFVRNRLTR-- 90 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHHHHHHHH--
Confidence 356899999999999999876445677779999999999999999875 222 33445443 222211111111
Q ss_pred CCCCCCcccccHHHHHHHHHHH--hCCceEEEEEcCccCcc--c-ccccccCCCCCCCCCCCcEEEEEcCcHHHH-h-hc
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKT--LSKKKFALLLDDLWERV--D-LKKVGVPLPSRSNSPKNSAVVFTTRFVDVC-G-RM 200 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~--~-~~~~~~~l~~~~~~~~~~~iivTtR~~~~~-~-~~ 200 (791)
.... +...+-++|+|+++... + ...+...+.. ...++++|+||...... . ..
T Consensus 91 ------------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~---~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 91 ------------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA---YSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred ------------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh---cCCCceEEEEcCChhhchHHHH
Confidence 1111 11345678999997551 1 1222222332 34567888888643221 1 11
Q ss_pred cccceEEeccCChHHHHHHHHHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREK 223 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~ 223 (791)
+....+.+...+.++..+++...
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHHH
Confidence 22346788888888887776543
No 136
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.24 E-value=1.1e-06 Score=86.95 Aligned_cols=192 Identities=19% Similarity=0.217 Sum_probs=130.3
Q ss_pred ccCccceeEEEcccCCCCC-----C-CCCCCCCCccEEEecCCCC----cccch------hhhccCCcccEEeecCcccc
Q 038105 408 VRGWEMVRRLSLMRNSIDN-----L-PTVPTCPHLLTLFLNDNEL----TTITD------DFFQSMPCLTVLKMSDIRML 471 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~-----l-~~~~~l~~L~~L~l~~~~~----~~~~~------~~~~~l~~L~~L~l~~~~~~ 471 (791)
...+..++.+++++|.+.. + +.+.+.++|+..+++.--. ..+++ ..+-.+++|++||||+|-..
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3455688889999998753 1 1345566888888875431 12221 22456789999999999544
Q ss_pred cccccc----ccCcccccEEecCCCccccc--------------chhhhcCCCCceeeccCcccccccch----hHhhcC
Q 038105 472 QQLPMG----ISKLVSLQLLDISNTEVEEL--------------PEELKALVNLKCLNLDWTDVLVEVPQ----QLLSNF 529 (791)
Q Consensus 472 ~~lp~~----~~~l~~L~~L~L~~~~l~~l--------------p~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~~l 529 (791)
...+.. +..+..|++|.|.+|.+... -+.++.-++|+.+....|++ ...+. ..+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccccHHHHHHHHHhc
Confidence 444433 55688899999999976522 12245667999999999876 44442 236778
Q ss_pred cCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCccccc
Q 038105 530 SRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVA 609 (791)
Q Consensus 530 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 609 (791)
+.|+.+.+..|.|... ....+...+..+++|+.|++..|.++.-....-. .
T Consensus 185 ~~leevr~~qN~I~~e------G~~al~eal~~~~~LevLdl~DNtft~egs~~La-----------------------k 235 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPE------GVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----------------------K 235 (382)
T ss_pred cccceEEEecccccCc------hhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-----------------------H
Confidence 8999999999987542 2245678899999999999999988653321111 2
Q ss_pred ccccccccceEEecccCCCC
Q 038105 610 DLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 610 ~l~~l~~L~~L~l~~~~~~~ 629 (791)
.++.+++|++|.++.|.+..
T Consensus 236 aL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred Hhcccchheeeccccccccc
Confidence 35556778888888776654
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.24 E-value=1.3e-05 Score=93.80 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=101.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC---CCE-EEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDY-VIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~ 124 (791)
..+|||+.+++++++.|... ...-+.++|++|+||||+|+.+++++....-. .+. ++.++++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----------
Confidence 45899999999999999876 44566799999999999999999987321100 112 222332110
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCccc-------cc---ccccCCCCCCCCCCCcEEEEEcC
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVD-------LK---KVGVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~---~~~~~l~~~~~~~~~~~iivTtR 192 (791)
..... ..+..++.++.+.+... +.+.+|++|+++.... .+ -+...+. ....++|-||.
T Consensus 255 ----~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-----~G~l~~IgaTT 324 (852)
T TIGR03345 255 ----QAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-----RGELRTIAATT 324 (852)
T ss_pred ----hcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-----CCCeEEEEecC
Confidence 00000 12223333444444332 4689999999965421 11 1222221 22345555555
Q ss_pred cHHHHh-------hccccceEEeccCChHHHHHHHHHHhCcccc-CCCCChHHHHHHHHHHcCCCc
Q 038105 193 FVDVCG-------RMEDRRMFKVACLSDEDAWELFREKVGEETI-ESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 193 ~~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P 250 (791)
..+... .......+.+++++.+++.+++......-.. ....-.++....+++.+++..
T Consensus 325 ~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 332211 1123458999999999999997554422110 011122566677778776653
No 138
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.22 E-value=1.9e-05 Score=85.52 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=96.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.|+|+.|+|||+|++++++.+.+. ..-..++|+++ .+....+...+.. .... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNALRN-------NKME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHHHc-------CCHH----HHHHHH
Confidence 3578999999999999999999987322 11235667664 2333344443321 1122 223333
Q ss_pred CCceEEEEEcCccCcccc----cccccCCCCCCCCCCCcEEEEEcCc-HHH--------HhhccccceEEeccCChHHHH
Q 038105 151 SKKKFALLLDDLWERVDL----KKVGVPLPSRSNSPKNSAVVFTTRF-VDV--------CGRMEDRRMFKVACLSDEDAW 217 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~~----~~~~~~l~~~~~~~~~~~iivTtR~-~~~--------~~~~~~~~~~~l~~l~~~e~~ 217 (791)
++ .-+|||||++....- +.+...+... ...+..+|+|+.. +.. ..++....++++++.+.++-.
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNAL--HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHH--HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 32 348899999753221 1121112110 1234557777753 222 222333457999999999999
Q ss_pred HHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 218 ELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+++.+.+.......+ ++..+.|++.+.|....+.-
T Consensus 275 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 275 AILQKKAEEEGLELP---DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 999999876553333 67888899999988765443
No 139
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.21 E-value=9.3e-06 Score=86.80 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=98.3
Q ss_pred cccchHHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~---~---------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|.+.+++++.+.+.- . ...+.|.|+|++|+|||++|+++++.. ...| +.+..+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~se----- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSE----- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecch-----
Confidence 367899999999887641 0 245678999999999999999999986 3333 1121111
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
+ ..... +........+.+. ....+.+++||+++.... +..+...+....
T Consensus 253 -L----~~k~~--------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~- 318 (438)
T PTZ00361 253 -L----IQKYL--------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD- 318 (438)
T ss_pred -h----hhhhc--------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-
Confidence 1 11110 0111222333332 245689999999864210 000111111100
Q ss_pred CCCCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+.+||.||......+. ...+..+++...+.++..++|..+.......... ....++..+.|.-
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv----dl~~la~~t~g~s 389 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV----DLEEFIMAKDELS 389 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc----CHHHHHHhcCCCC
Confidence 1335678888875444322 2345689999999999999999887654432222 2445566665543
No 140
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.20 E-value=1.7e-05 Score=87.01 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
.+.+.|+|+.|+|||+|++++++.... ......++|+++. ++...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 467999999999999999999998732 1123356677643 223333333321 111 2233333
Q ss_pred CCceEEEEEcCccCccc----ccccccCCCCCCCCCCCcEEEEEcCcH-HH--------HhhccccceEEeccCChHHHH
Q 038105 151 SKKKFALLLDDLWERVD----LKKVGVPLPSRSNSPKNSAVVFTTRFV-DV--------CGRMEDRRMFKVACLSDEDAW 217 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~~~iivTtR~~-~~--------~~~~~~~~~~~l~~l~~~e~~ 217 (791)
+ +.-+|||||++.... .+.+...+... ...+..+|+|+..+ .. ..++....++++++.+.++..
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l--~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNAL--HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHH--HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 3 345899999964321 11221111110 12244577777532 11 223344568999999999999
Q ss_pred HHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHH
Q 038105 218 ELFREKVGEETIESHHSIPELAQTVAKECDGLPLALI 254 (791)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 254 (791)
+++.+.+...+...+ ++.++.|++.+.|....+.
T Consensus 287 ~il~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 287 AILKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 999998865443333 6788999999999876443
No 141
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5e-05 Score=75.88 Aligned_cols=198 Identities=18% Similarity=0.200 Sum_probs=117.5
Q ss_pred ccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 51 VVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
+=|-++.++++.+.+.- + ..++-|.+||++|.|||-||++|+++- ...| +.+...
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----IrvvgS----- 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVGS----- 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEeccH-----
Confidence 45688889998887642 1 367889999999999999999999975 3333 333221
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCC-ceEEEEEcCccCc----------cc------ccccccCCCCCCCC
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSK-KKFALLLDDLWER----------VD------LKKVGVPLPSRSNS 181 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~----------~~------~~~~~~~l~~~~~~ 181 (791)
++.+..-.. -.-+++.+++..+. .+.+|++|++|.. .+ +-++...+..++ .
T Consensus 220 ---ElVqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD-~ 287 (406)
T COG1222 220 ---ELVQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD-P 287 (406)
T ss_pred ---HHHHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-C
Confidence 222222111 12355666666654 6899999999742 00 111222233322 2
Q ss_pred CCCcEEEEEc-C----cHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc----hH
Q 038105 182 PKNSAVVFTT-R----FVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP----LA 252 (791)
Q Consensus 182 ~~~~~iivTt-R----~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----la 252 (791)
..+.+||..| | ++.+.+....++.|++..-+.+.-.++|+-+........+-+ .+.+++.+.|.- .|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHH
Confidence 3456788766 4 333344445677899986677777788888887666444433 455666676664 34
Q ss_pred HHHHHHHhh--cCC---CHHHHHHHHHHHh
Q 038105 253 LITIGRAMA--YKK---TPEEWRYAIEVLR 277 (791)
Q Consensus 253 l~~~~~~l~--~~~---~~~~w~~~l~~l~ 277 (791)
+-+=|++++ ... +-+.+..+.+..-
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 444455443 222 4455555555443
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.17 E-value=3.9e-05 Score=81.56 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~---~---------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|.+...+++.+.+.- . ...+.|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~------s 213 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVG------S 213 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEeh------H
Confidence 478888888888876531 0 246789999999999999999999876 3332 12211 1
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
.+..... +........+.... ...+.+|+||+++.... +..+...+... .
T Consensus 214 ----~l~~k~~--------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~-~ 280 (398)
T PTZ00454 214 ----EFVQKYL--------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF-D 280 (398)
T ss_pred ----HHHHHhc--------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc-C
Confidence 1111110 00111223333333 45789999999874310 01111111110 0
Q ss_pred CCCCcEEEEEcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..||.||......+ ....+..+++...+.++..++|..+........+- ...++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCC
Confidence 234567788887543322 12345678999999999999998877554422222 2456667776653
No 143
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=8.9e-05 Score=76.68 Aligned_cols=206 Identities=16% Similarity=0.178 Sum_probs=121.3
Q ss_pred CCcccchHHHHHHHHHHhccC---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~---~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
+..++||+.+.+.+.+++... ...+.+.|.|..|.|||.+...++.+.... ..-..++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~-~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKS-SKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhh-cccceeEEEeeccccchHHHHHHHH
Confidence 667999999999999998753 467899999999999999999999987321 1223567888776566677777777
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCC--ceEEEEEcCccCccc--cccc--ccCCCCCCCCCCCcEEEEEcC------
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSK--KKFALLLDDLWERVD--LKKV--GVPLPSRSNSPKNSAVVFTTR------ 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~--~~~~--~~~l~~~~~~~~~~~iivTtR------ 192 (791)
..+-.... ......+....+.....+ ..+++|+|+.|.... -..+ ...|+. -+++++|+.--
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~----lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK----LPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc----CCcceeeeeeehhhhhH
Confidence 66611100 111113444445544433 469999999975411 1111 122332 23444444221
Q ss_pred ---cHHHHhh--ccccceEEeccCChHHHHHHHHHHhCccccCCCC--ChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 193 ---FVDVCGR--MEDRRMFKVACLSDEDAWELFREKVGEETIESHH--SIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 193 ---~~~~~~~--~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
.-.-... ......+.+.|++.++-.+++.++.......... .++-.|++++.-.|.+-.|+.+.-+++
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111111 1234578999999999999999998654422111 122233333333444455555444333
No 144
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.17 E-value=1.3e-05 Score=84.41 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=71.9
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++++.+..++.+...+... +.+.++|++|+|||++|+++++... ....+..+.|+.+....+..+.+.-..-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~---~~iil~GppGtGKT~lA~~la~~l~-~~~~~~~v~~VtFHpsySYeDFI~G~rP~- 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK---KNIILQGPPGVGKTFVARRLAYLLT-GEKAPQRVNMVQFHQSYSYEDFIQGYRPN- 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC---CCEEEECCCCCCHHHHHHHHHHHhc-CCcccceeeEEeecccccHHHHhcccCCC-
Confidence 345789999999999999865 6888999999999999999999872 23467788899998877766554322100
Q ss_pred CCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER 165 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 165 (791)
+. .-....+..-...+... .-.++++++|||+++..
T Consensus 249 ~v-gy~~~~G~f~~~~~~A~-~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 GV-GFRRKDGIFYNFCQQAK-EQPEKKYVFIIDEINRA 284 (459)
T ss_pred CC-CeEecCchHHHHHHHHH-hcccCCcEEEEehhhcc
Confidence 00 00000111111111111 11246899999999654
No 145
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.17 E-value=2.1e-05 Score=79.62 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=81.9
Q ss_pred cccchHHHHHHHHHHhcc--------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC
Q 038105 50 TVVGLQSQLEQVWRCLVQ--------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~--------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 115 (791)
.++|.+...+++.+.... .+....+.++|++|+||||+|+.+++.+.... ......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~-~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN-VLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC-cccCCceEEecHH--
Confidence 478888777666543210 12456789999999999999999988752111 1011112222221
Q ss_pred HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc----------cccccccCCCCCCCCCCCc
Q 038105 116 LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV----------DLKKVGVPLPSRSNSPKNS 185 (791)
Q Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~~~~~ 185 (791)
++ .... .+........+.+... .-+|++|+++... ..+.+...+.. .....
T Consensus 84 --~l----~~~~--------~g~~~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~---~~~~~ 144 (261)
T TIGR02881 84 --DL----VGEY--------IGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED---NRNEF 144 (261)
T ss_pred --Hh----hhhh--------ccchHHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhc---cCCCE
Confidence 11 1111 0011112222223222 2488999997532 12223222222 23334
Q ss_pred EEEEEcCcHHH----------HhhccccceEEeccCChHHHHHHHHHHhCccc
Q 038105 186 AVVFTTRFVDV----------CGRMEDRRMFKVACLSDEDAWELFREKVGEET 228 (791)
Q Consensus 186 ~iivTtR~~~~----------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 228 (791)
.+|+++..... ... ....+++++++.+|..+++.+.+....
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 55555543221 111 234689999999999999998876543
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=0.00011 Score=75.88 Aligned_cols=196 Identities=17% Similarity=0.178 Sum_probs=112.6
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC------------CCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP------------TDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~------------~~f~~~~wv~~~~~~~~ 116 (791)
..++|.+...+.+.+.+..+.-.+...++|+.|+||+++|.+++..+--.. ....-+.|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 357999999999999998874468999999999999999999987752111 11222344432110000
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEE
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVF 189 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iiv 189 (791)
..+-...+...+...........++ ++.+.+++. +++=++|+|+++.+.. ...+...+.. .+ .+.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE---Pp-~~~fIL 158 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE---PG-NGTLIL 158 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC---CC-CCeEEE
Confidence 0000111111111000001112222 344555553 3456899999976633 3445445544 33 345555
Q ss_pred EcCcH-HHHhh-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 190 TTRFV-DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 190 TtR~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+|.+. .+... .+....+++.++++++..+.+.+...... .......++..++|.|.....
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 55433 33222 24456899999999999999998753211 111246789999999965443
No 147
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=4.2e-06 Score=86.01 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=66.2
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCCCcccc
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKDK 137 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~ 137 (791)
++++++..=+......|+|++|+||||||+++++... ..+|+.++|+.+.... .+.++++.+...+-.+.-+....
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~ 235 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAE 235 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHH
Confidence 3455555433557888999999999999999999873 2389999999987776 67788888763322221110110
Q ss_pred ----cHHHHHHHHHHH-hCCceEEEEEcCccC
Q 038105 138 ----RLEEKAQDIFKT-LSKKKFALLLDDLWE 164 (791)
Q Consensus 138 ----~~~~~~~~l~~~-l~~~~~LlVlDdv~~ 164 (791)
......+....+ ..++.++|++|++..
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 011112222222 257899999999954
No 148
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.12 E-value=0.00018 Score=68.87 Aligned_cols=185 Identities=14% Similarity=0.180 Sum_probs=107.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
+.+++.++|.-|.|||++++++...+ .+.-.+++. .-....+...+...+...+.......-....++....+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~---~~d~~~~v~-i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASL---NEDQVAVVV-IDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhc---CCCceEEEE-ecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 45799999999999999999776665 222223322 23455677888888888887632111111222333333333
Q ss_pred h-CCce-EEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcHHH--------Hhhc--cccceEEeccCChHH
Q 038105 150 L-SKKK-FALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV--------CGRM--EDRRMFKVACLSDED 215 (791)
Q Consensus 150 l-~~~~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~--------~~~~--~~~~~~~l~~l~~~e 215 (791)
. ++++ ..+++|+..+. +.++.++-.......+...-+|+.... +++ .... +....|++.|++.++
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gq-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQ-PKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCC-cccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 3 3444 99999999754 333333222211000111122333222 111 1111 112238999999999
Q ss_pred HHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHH
Q 038105 216 AWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRA 259 (791)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 259 (791)
+..++..+........+--..+....|.....|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999876653222233556778999999999999887743
No 149
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.12 E-value=3.6e-05 Score=83.54 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=92.0
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCC--CCCCEEEEEEeCCcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP--TDFDYVIWVVVSKDL 114 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~--~~f~~~~wv~~~~~~ 114 (791)
..+.|.+..++++.+.+.. -...+-+.++|++|+|||++|+++++.+.... .......|+++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 3478899999999887642 02456799999999999999999999872110 012234455543321
Q ss_pred CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcc---------cc-----cccccCCCCCC
Q 038105 115 QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERV---------DL-----KKVGVPLPSRS 179 (791)
Q Consensus 115 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~-----~~~~~~l~~~~ 179 (791)
+....... .........+...... .+++++++||+++... +. ..+...+....
T Consensus 262 --------Ll~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 262 --------LLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred --------hcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 11110000 0111112222222222 2468999999997431 11 12222222211
Q ss_pred CCCCCcEEEEEcCcHHHH-----hhccccceEEeccCChHHHHHHHHHHhCc
Q 038105 180 NSPKNSAVVFTTRFVDVC-----GRMEDRRMFKVACLSDEDAWELFREKVGE 226 (791)
Q Consensus 180 ~~~~~~~iivTtR~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 226 (791)
...+..||.||-..... +....+..|+++..+.++..++|..++..
T Consensus 330 -~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 -SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred -cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 12344455566433322 11234557999999999999999998753
No 150
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.11 E-value=6.4e-05 Score=72.67 Aligned_cols=169 Identities=18% Similarity=0.184 Sum_probs=99.3
Q ss_pred CcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
.+|||-++..+++.=.+.. +...-.|.++|++|.||||||.-+++.. ..++.. .....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~----tsGp~----------- 87 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKI----TSGPA----------- 87 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEe----ccccc-----------
Confidence 4699999988888877754 2356789999999999999999999987 333221 10000
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc---------ccccccc-cCCCCCCCCCCCcE--------
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER---------VDLKKVG-VPLPSRSNSPKNSA-------- 186 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~~~-~~l~~~~~~~~~~~-------- 186 (791)
-....+++. +...+..+ =.+++|+++.. ...+... ..+.. .++++|
T Consensus 88 -----------leK~gDlaa-iLt~Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG---~gp~Arsv~ldLpp 151 (332)
T COG2255 88 -----------LEKPGDLAA-ILTNLEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIG---KGPAARSIRLDLPP 151 (332)
T ss_pred -----------ccChhhHHH-HHhcCCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEc---cCCccceEeccCCC
Confidence 000111111 11112222 34556666532 0011110 00111 122222
Q ss_pred ---EEEEcCcHHHHhhc--cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHH
Q 038105 187 ---VVFTTRFVDVCGRM--EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALI 254 (791)
Q Consensus 187 ---iivTtR~~~~~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 254 (791)
|=-|||.-.+..-. ....+.+++-.+.+|-.+++.+.+..-+.... ++.+.+|+++..|-|.-..
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIAN 221 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHH
Confidence 33488854332211 23457899999999999999998866554333 6779999999999996433
No 151
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=4.9e-07 Score=98.32 Aligned_cols=128 Identities=28% Similarity=0.413 Sum_probs=92.4
Q ss_pred ccceeEEEcccCCCCC-CCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 411 WEMVRRLSLMRNSIDN-LPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~-l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
+..+..+++..|.+.. ...+..+.+|..|++.+|.+..+... +..+++|++|++++| .++.+. .+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhhee
Confidence 3455555567777666 33477788888888888887776653 567888888888888 666654 5677777888888
Q ss_pred CCCcccccchhhhcCCCCceeeccCcccccccch-hHhhcCcCCCeeeeeecCccc
Q 038105 490 SNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQ-QLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 490 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~ 544 (791)
.+|.|+.+. .+..+.+|+.+++++|.+ ..++. . ...+.+|+.+.+.+|.+..
T Consensus 148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 148 SGNLISDIS-GLESLKSLKLLDLSYNRI-VDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCcchhcc-CCccchhhhcccCCcchh-hhhhhhh-hhhccchHHHhccCCchhc
Confidence 888887664 445578888888888876 45544 1 2678888888888887655
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00011 Score=76.31 Aligned_cols=156 Identities=10% Similarity=0.095 Sum_probs=89.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC-C----C-------------CCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP-T----D-------------FDYVIWVVVSKDLQLEKIQETIGKKIGLYT 131 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~----~-------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 131 (791)
-.+...++|+.|+|||++|+.++..+--.. . + ..-+.|+.....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------ 82 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------ 82 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------------------
Confidence 456788999999999999999988762100 0 0 001122211000
Q ss_pred CCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHH-Hhh-ccc
Q 038105 132 DSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDV-CGR-MED 202 (791)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~-~~~-~~~ 202 (791)
......++..+ +.+.+. +++=++|||+++.+. ....+...+.. .+.++.+|++|.+... ... .+.
T Consensus 83 --~~~i~id~iR~-l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SR 156 (328)
T PRK05707 83 --DKTIKVDQVRE-LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSR 156 (328)
T ss_pred --CCCCCHHHHHH-HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhh
Confidence 00112233322 333322 233345679998663 34444444544 4456777777766533 222 234
Q ss_pred cceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 203 RRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 203 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
...+.+.+++.+++.+.+.+...... .+.+..++..++|.|.....+
T Consensus 157 c~~~~~~~~~~~~~~~~L~~~~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 157 CQQQACPLPSNEESLQWLQQALPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ceeeeCCCcCHHHHHHHHHHhcccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 56799999999999999987642111 445677889999999754433
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=0.00011 Score=80.99 Aligned_cols=162 Identities=19% Similarity=0.154 Sum_probs=98.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.|+|..|+|||.|+.++++..... .....++|+++ .++...+...+.. .. ...+.+.+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y 375 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRY 375 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHh
Confidence 3568999999999999999999986221 12235667664 3333343333211 11 12233333
Q ss_pred CCceEEEEEcCccCccc---c-cccccCCCCCCCCCCCcEEEEEcCcH---------HHHhhccccceEEeccCChHHHH
Q 038105 151 SKKKFALLLDDLWERVD---L-KKVGVPLPSRSNSPKNSAVVFTTRFV---------DVCGRMEDRRMFKVACLSDEDAW 217 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~~~~~~iivTtR~~---------~~~~~~~~~~~~~l~~l~~~e~~ 217 (791)
.+ .=+|||||++.... + +.+...+... ...+..|||||+.. .+..++...-++++++.+.+.-.
T Consensus 376 ~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l--~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 376 RE-MDILLVDDIQFLEDKESTQEEFFHTFNTL--HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred hc-CCEEEEehhccccCCHHHHHHHHHHHHHH--HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 33 35788999964422 1 1122222211 23355688888742 22334455678999999999999
Q ss_pred HHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 218 ELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+++.+++....+..+ ++.++-|++.+.+....|..+
T Consensus 453 aIL~kka~~r~l~l~---~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 453 AILRKKAVQEQLNAP---PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHHHHHhcCCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 999999877664444 678888888888775544433
No 154
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.04 E-value=6.2e-05 Score=76.75 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=83.6
Q ss_pred CcccchHHHHHHHHHHhc--------c--C----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 49 PTVVGLQSQLEQVWRCLV--------Q--E----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~--------~--~----~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
..++|-+...+++.+... . + .....+.++|++|+|||++|+.++..+.. .+......|+.++.
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~-- 98 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR-- 98 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH--
Confidence 357888877777655421 0 0 12236889999999999999988776521 11111112333332
Q ss_pred CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc------c-----ccccccCCCCCCCCCC
Q 038105 115 QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV------D-----LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 115 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~-----~~~~~~~l~~~~~~~~ 183 (791)
.+ +...+.... .. ....+.+... .-+|+||+++... . .+.+...+.. ...
T Consensus 99 --~~----l~~~~~g~~-------~~-~~~~~~~~a~--~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~---~~~ 159 (284)
T TIGR02880 99 --DD----LVGQYIGHT-------AP-KTKEILKRAM--GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN---QRD 159 (284)
T ss_pred --HH----HhHhhcccc-------hH-HHHHHHHHcc--CcEEEEechhhhccCCCccchHHHHHHHHHHHHhc---CCC
Confidence 11 222211110 11 1222223222 3588999996331 1 1222233333 334
Q ss_pred CcEEEEEcCcHHHHhhc--------cccceEEeccCChHHHHHHHHHHhCcc
Q 038105 184 NSAVVFTTRFVDVCGRM--------EDRRMFKVACLSDEDAWELFREKVGEE 227 (791)
Q Consensus 184 ~~~iivTtR~~~~~~~~--------~~~~~~~l~~l~~~e~~~l~~~~~~~~ 227 (791)
+.+||+++......... .....+++++++.+|..+++...+...
T Consensus 160 ~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 160 DLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 56677766533221110 123579999999999999998887543
No 155
>CHL00181 cbbX CbbX; Provisional
Probab=98.03 E-value=0.00012 Score=74.61 Aligned_cols=158 Identities=11% Similarity=0.109 Sum_probs=83.8
Q ss_pred CcccchHHHHHHHHHHhc--------c------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 49 PTVVGLQSQLEQVWRCLV--------Q------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~--------~------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
..++|-+...+++.++.. . ......+.++|++|+|||++|+.+++.+.. .+.-...-|+.++.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~-- 99 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTR-- 99 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecH--
Confidence 357887766665554421 1 112345889999999999999999886521 11111111333331
Q ss_pred CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc-----------ccccccccCCCCCCCCCC
Q 038105 115 QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER-----------VDLKKVGVPLPSRSNSPK 183 (791)
Q Consensus 115 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~~ 183 (791)
.. +....... ... ....+.+...+ -+|+||+++.. ...+.+...+.. ...
T Consensus 100 --~~----l~~~~~g~-------~~~-~~~~~l~~a~g--gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~---~~~ 160 (287)
T CHL00181 100 --DD----LVGQYIGH-------TAP-KTKEVLKKAMG--GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN---QRD 160 (287)
T ss_pred --HH----HHHHHhcc-------chH-HHHHHHHHccC--CEEEEEccchhccCCCccchHHHHHHHHHHHHhc---CCC
Confidence 11 22211110 011 11222222222 48999999653 111222223333 334
Q ss_pred CcEEEEEcCcHHHHh--------hccccceEEeccCChHHHHHHHHHHhCccc
Q 038105 184 NSAVVFTTRFVDVCG--------RMEDRRMFKVACLSDEDAWELFREKVGEET 228 (791)
Q Consensus 184 ~~~iivTtR~~~~~~--------~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 228 (791)
+.+||+++....... .......+++++++.+|..+++.+.+....
T Consensus 161 ~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 161 DLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred CEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 566777765332211 112345799999999999999998876544
No 156
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=5.1e-05 Score=82.11 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.|+|+.|+|||+|++++++.+.. ....+++++. ..+...+...+.. .. ...+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~------~~f~~~~~~~l~~-------~~----~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRS------ELFTEHLVSAIRS-------GE----MQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeH------HHHHHHHHHHHhc-------ch----HHHHHHHc
Confidence 357899999999999999999998732 2234566653 2333344433321 11 12233333
Q ss_pred CCceEEEEEcCccCcccc----cccccCCCCCCCCCCCcEEEEEcCc-HHH--------HhhccccceEEeccCChHHHH
Q 038105 151 SKKKFALLLDDLWERVDL----KKVGVPLPSRSNSPKNSAVVFTTRF-VDV--------CGRMEDRRMFKVACLSDEDAW 217 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~~----~~~~~~l~~~~~~~~~~~iivTtR~-~~~--------~~~~~~~~~~~l~~l~~~e~~ 217 (791)
+ ..-++++||++..... +.+...+... ...|..||+||.. +.. ..++....++++++++.++..
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l--~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~ 277 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSL--HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLR 277 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHH--HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHH
Confidence 3 3458888999653221 1121222110 1234567787753 222 223344568999999999999
Q ss_pred HHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 218 ELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
+++.+.+...+...+ ++.+.-|++.+.|.-
T Consensus 278 ~iL~~k~~~~~~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 278 SFLERKAEALSIRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCH
Confidence 999998876553333 566777877777654
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.03 E-value=2.5e-05 Score=91.97 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=99.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC--C-CEEEE-EEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD--F-DYVIW-VVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~--f-~~~~w-v~~~~~~~~~~~~~~i~ 124 (791)
..++||+++++++++.|... ..+-+.++|++|+|||++|+.++.+....... . ...+| ++. . .+.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~-~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~------~----~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR-TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI------G----LLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc-ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH------H----HHh
Confidence 34799999999999999876 44566799999999999999999987322111 1 12333 221 1 111
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCccc---------cccc-ccCCCCCCCCCCCcEEEEEcCc
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERVD---------LKKV-GVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~---------~~~~-~~~l~~~~~~~~~~~iivTtR~ 193 (791)
. +.. ..+..++.++.+.+.+. .++.+|+||+++.... ...+ ...+. ....++|-+|..
T Consensus 248 a-----g~~-~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-----rg~l~~IgaTt~ 316 (821)
T CHL00095 248 A-----GTK-YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-----RGELQCIGATTL 316 (821)
T ss_pred c-----cCC-CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-----CCCcEEEEeCCH
Confidence 1 111 12334445555555443 4689999999963311 1111 11121 123455555554
Q ss_pred HHHHh-------hccccceEEeccCChHHHHHHHHHHhCccc-cCCCCChHHHHHHHHHHcCC
Q 038105 194 VDVCG-------RMEDRRMFKVACLSDEDAWELFREKVGEET-IESHHSIPELAQTVAKECDG 248 (791)
Q Consensus 194 ~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g 248 (791)
.+... .......+.+...+.+++..++......-. .....-.++....+++.++|
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 43311 112335688888899998888765432100 00001124556666666654
No 158
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.01 E-value=0.0001 Score=81.92 Aligned_cols=179 Identities=15% Similarity=0.115 Sum_probs=97.8
Q ss_pred CcccchHHHHHHHHHHhc---c--------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLV---Q--------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~---~--------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+...+++.+.+. . ....+-+.++|++|+|||++|++++... ...| +.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eeccHH----
Confidence 457898877666665443 1 1234579999999999999999999875 2222 222111
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----------------ccccccCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----------------LKKVGVPLPSRSNS 181 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~~ 181 (791)
++. .... ........+.+.......+.+|+|||++.... +..+...+.... .
T Consensus 123 ~~~----~~~~-------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-~ 190 (495)
T TIGR01241 123 DFV----EMFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-T 190 (495)
T ss_pred HHH----HHHh-------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc-C
Confidence 111 1110 00112222233333345679999999965311 001111111100 2
Q ss_pred CCCcEEEEEcCcHHH-----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHH
Q 038105 182 PKNSAVVFTTRFVDV-----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALIT 255 (791)
Q Consensus 182 ~~~~~iivTtR~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 255 (791)
..+..||.||..+.. .+....+..+.+...+.++-.+++..++....... ......+++.+.|. +.-|..
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCCHHHHHH
Confidence 234455666654332 22223456789999999999999988875443211 23355788888874 333333
No 159
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.01 E-value=0.00024 Score=73.94 Aligned_cols=203 Identities=15% Similarity=0.196 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCCCEEEEEEeCCc---cCHHHHHHHHHHHhCC
Q 038105 54 LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIGKKIGL 129 (791)
Q Consensus 54 R~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~ 129 (791)
|.+.+++|..||.+. ....|+|.||-|+||+.|+ .++.++. ..++.++|.+- .+-...+..++.++|.
T Consensus 1 R~e~~~~L~~wL~e~-~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY 72 (431)
T PF10443_consen 1 RKEAIEQLKSWLNEN-PNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGY 72 (431)
T ss_pred CchHHHHHHHHHhcC-CCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCC
Confidence 667889999999987 5689999999999999999 7776654 22888887653 3456777888888764
Q ss_pred CC-----------------------CCcccccHHHH-------HHHHHHH-------------------hC---CceEEE
Q 038105 130 YT-----------------------DSWKDKRLEEK-------AQDIFKT-------------------LS---KKKFAL 157 (791)
Q Consensus 130 ~~-----------------------~~~~~~~~~~~-------~~~l~~~-------------------l~---~~~~Ll 157 (791)
-+ ..+......++ ...+++. ++ ..+=+|
T Consensus 73 ~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 73 FPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred CcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 11 00111111111 1111110 10 114589
Q ss_pred EEcCccCccc--------ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhc------cccceEEeccCChHHHHHHHHHH
Q 038105 158 LLDDLWERVD--------LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRM------EDRRMFKVACLSDEDAWELFREK 223 (791)
Q Consensus 158 VlDdv~~~~~--------~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~------~~~~~~~l~~l~~~e~~~l~~~~ 223 (791)
||||+..... +.++...+.. .+-.+||++|-+....... ...+.+.+...+.+.|.++...+
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9999953211 2222233332 4457899988876553322 24567899999999999999999
Q ss_pred hCccccC------------CC-----CChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHH
Q 038105 224 VGEETIE------------SH-----HSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEE 268 (791)
Q Consensus 224 ~~~~~~~------------~~-----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 268 (791)
....... .. ..........++..||-=.=|..++.-++.+.++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 8654200 00 123455678889999999999999999887665543
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.00 E-value=4.8e-05 Score=87.28 Aligned_cols=155 Identities=16% Similarity=0.250 Sum_probs=89.8
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC---CEEEEEEeCCccCHHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---DYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
..++||+.+++++++.|... ...-+.++|++|+|||++|+.+++........+ +..+|. . +.. .+..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~-~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-l----~~~----~lla 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-L----DIG----SLLA 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-c----cHH----HHhc
Confidence 35899999999999999886 445667899999999999999998763222121 233331 1 111 1110
Q ss_pred HhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcc--------c--ccc-cccCCCCCCCCCCCcEEEEEcCc
Q 038105 126 KIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERV--------D--LKK-VGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~--------~--~~~-~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
+ .. ..+..++..+.+.+.+ +..+.+|+||+++... + ... +...+. ....++|-+|..
T Consensus 256 --G---~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-----~g~i~vIgATt~ 324 (758)
T PRK11034 256 --G---TK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----SGKIRVIGSTTY 324 (758)
T ss_pred --c---cc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-----CCCeEEEecCCh
Confidence 0 00 1223344444444444 3457899999997431 1 111 122221 123344444443
Q ss_pred HHHHh-------hccccceEEeccCChHHHHHHHHHHh
Q 038105 194 VDVCG-------RMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 194 ~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
.+... ..+....+.+++.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 33211 11233579999999999999998764
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.99 E-value=7.7e-05 Score=87.75 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=88.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..++||+.+++++++.|... ....+.++|++|+|||++|+.++........ .-..+++++++.- .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~---- 246 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------V---- 246 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------h----
Confidence 34899999999999999886 4556779999999999999999998732110 0122333332211 0
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHh--CCceEEEEEcCccCccc---------cccc-ccCCCCCCCCCCCcEEEEEcC
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTL--SKKKFALLLDDLWERVD---------LKKV-GVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~~---------~~~~-~~~l~~~~~~~~~~~iivTtR 192 (791)
.. .. ..+..++.++.+.+.+ ..++.+|++|+++.... ...+ ...+. ....++|-+|.
T Consensus 247 ag-----~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~-----~g~l~~IgaTt 315 (857)
T PRK10865 247 AG-----AK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELHCVGATT 315 (857)
T ss_pred hc-----cc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh-----cCCCeEEEcCC
Confidence 00 00 1122333444444433 25689999999975421 1122 22221 12344555444
Q ss_pred cHHHHh-------hccccceEEeccCChHHHHHHHHHHh
Q 038105 193 FVDVCG-------RMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 193 ~~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
..+... .......+.+..-+.+++.+++....
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 333210 11223356677778899998887654
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.98 E-value=6.9e-05 Score=88.56 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=89.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..+|||+.+++++++.|... ....+.++|++|+|||++|+.++.+...... ....++.++++ .+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~----------~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG----------ALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH----------HHh
Confidence 34899999999999999876 4466678999999999999999988732110 11123333321 110
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCccc---------cccc-ccCCCCCCCCCCCcEEEEEcC
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVD---------LKKV-GVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~---------~~~~-~~~l~~~~~~~~~~~iivTtR 192 (791)
. ... ..+..+..++.+...+. +++.+|+||+++.... ...+ ...+. .+ ..++|-+|.
T Consensus 242 a-----~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~----~g-~i~~IgaTt 310 (852)
T TIGR03346 242 A-----GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA----RG-ELHCIGATT 310 (852)
T ss_pred h-----cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh----cC-ceEEEEeCc
Confidence 0 000 11233334444444442 4689999999974421 1111 21121 12 234444444
Q ss_pred cHHHHh-------hccccceEEeccCChHHHHHHHHHHhC
Q 038105 193 FVDVCG-------RMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 193 ~~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
..+... ......++.+...+.++..+++.....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHH
Confidence 333211 112335688999999999999876643
No 163
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=4.4e-05 Score=79.16 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCCCCcccc---cH-HHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIGKKIGLYTDSWKDK---RL-EEKA 143 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~---~~-~~~~ 143 (791)
....++|+|++|+|||||++.+++.+. ..+|+..+|+.+... .++.++++.+...+-...-+.... .. ....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 456799999999999999999999873 236898899988755 688999999854432222111111 11 1122
Q ss_pred HHHHHH-hCCceEEEEEcCccCc
Q 038105 144 QDIFKT-LSKKKFALLLDDLWER 165 (791)
Q Consensus 144 ~~l~~~-l~~~~~LlVlDdv~~~ 165 (791)
+....+ ..+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 222222 2578999999999543
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.93 E-value=8.4e-05 Score=72.43 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=41.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEE
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIW 107 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 107 (791)
..+.+|......+..++.+. ..|.+.|++|+|||+||.+++.+... .+.|..++.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEE
Confidence 34678888999999988764 59999999999999999999885311 234554443
No 165
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.0004 Score=71.30 Aligned_cols=180 Identities=10% Similarity=0.053 Sum_probs=98.3
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCE---EE--EEEeCCccCHHHHHHHHHHHhCCC
Q 038105 56 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY---VI--WVVVSKDLQLEKIQETIGKKIGLY 130 (791)
Q Consensus 56 ~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~---~~--wv~~~~~~~~~~~~~~i~~~l~~~ 130 (791)
...+++.+.+..+.-.+.+.++|+.|+||+++|..++..+-- .....+ .+ |+..+..+++..+. ..+
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC-~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p 82 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA-SGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIP 82 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC-CCCCCCCcchHHHHHhcCCCCCEEEEe-------cCC
Confidence 345666677766645667999999999999999999876521 110000 00 00000000000000 000
Q ss_pred CCCc----ccccHHHHHHHHHHHhC-----CceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcH-HHHh
Q 038105 131 TDSW----KDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCG 198 (791)
Q Consensus 131 ~~~~----~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~ 198 (791)
.... .....+ .++.+.+.+. ++.=++|||+++.+.. -..+...+.. .+.++.+|++|.+. .+..
T Consensus 83 ~~~~~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 83 NRTGDKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE---PSPGRYLWLISAQPARLPA 158 (319)
T ss_pred CcccccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC---CCCCCeEEEEECChhhCch
Confidence 0000 001122 2334444442 3456899999987632 3344444544 44566666666543 3322
Q ss_pred h-ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 199 R-MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 199 ~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
. .+....+.+.+.+.+++.+.+.+. +. + +..+..++..++|.|.....+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHH
Confidence 2 234567899999999999999754 11 1 344677899999999865433
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.88 E-value=0.00032 Score=79.07 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=97.4
Q ss_pred CcccchHHHHHHHHHHh---ccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCL---VQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L---~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.++..+++.+.+ ... ...+.|.++|++|+|||++|++++... ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 45788877666665553 321 124579999999999999999999875 222 2222211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc------------c----ccccccCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV------------D----LKKVGVPLPSRSNS 181 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~~ 181 (791)
++... ..+ .........+.......+.+|+|||++... . +..+...+.... .
T Consensus 251 ~f~~~---~~g--------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-~ 318 (638)
T CHL00176 251 EFVEM---FVG--------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-G 318 (638)
T ss_pred HHHHH---hhh--------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-C
Confidence 11100 001 011222333344445678999999996431 0 111111121110 2
Q ss_pred CCCcEEEEEcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCC
Q 038105 182 PKNSAVVFTTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDG 248 (791)
Q Consensus 182 ~~~~~iivTtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 248 (791)
..+..||.||......+ ....+..+.+...+.++-.++++.++..... ........+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 33556666665543322 1234567899999999999999988765331 113446678888877
No 167
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.9e-05 Score=54.39 Aligned_cols=35 Identities=43% Similarity=0.667 Sum_probs=20.0
Q ss_pred cccEEecCCCcccccchhhhcCCCCceeeccCccc
Q 038105 483 SLQLLDISNTEVEELPEELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 483 ~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 517 (791)
+|++|++++|+|+.+|..+++|++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45666666666666655566666666666666654
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.85 E-value=9.3e-05 Score=82.68 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred CCcccchHHHHHHHHHHhccC----CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~----~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
-.+++|.++.++++..++... ...++++|+|+.|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456999999999999998752 234679999999999999999999875
No 169
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=2.2e-06 Score=72.92 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=75.1
Q ss_pred eeEEEcccCCCCCCC----CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 414 VRRLSLMRNSIDNLP----TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 414 l~~l~l~~~~~~~l~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
+..++++.+.+..++ .+....+|...++++|.+.+.++.+-..++.+..|++++| .+..+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 344556666555443 2455667777777777777777776666677777777777 67777777777777777777
Q ss_pred CCCcccccchhhhcCCCCceeeccCcccccccchh
Q 038105 490 SNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQ 524 (791)
Q Consensus 490 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 524 (791)
+.|.+...|.-+-.+.+|-.|+..+|.. ..+|-+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 7777777777766677777777777765 555544
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.84 E-value=0.00021 Score=66.12 Aligned_cols=135 Identities=16% Similarity=0.159 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-----------------CCEEEEEEeCCccC
Q 038105 53 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-----------------FDYVIWVVVSKDLQ 115 (791)
Q Consensus 53 GR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~-----------------f~~~~wv~~~~~~~ 115 (791)
|-+...+.|.+.+..+.-.+.+.++|+.|+||+++|+.++..+--.... ...+.|+......
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 5567788888888877456678999999999999999998876321111 1122233221110
Q ss_pred HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEE
Q 038105 116 LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVV 188 (791)
Q Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~ii 188 (791)
.....++.. .+.+.+. ++.=++|||+++.+ ....++...+.. .+.++++|
T Consensus 80 -------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe---pp~~~~fi 136 (162)
T PF13177_consen 80 -------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE---PPENTYFI 136 (162)
T ss_dssp -------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS---TTTTEEEE
T ss_pred -------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC---CCCCEEEE
Confidence 011233333 4444442 34568999999876 334445555554 55678888
Q ss_pred EEcCcHHH-Hh-hccccceEEeccC
Q 038105 189 FTTRFVDV-CG-RMEDRRMFKVACL 211 (791)
Q Consensus 189 vTtR~~~~-~~-~~~~~~~~~l~~l 211 (791)
++|++..- .. -.+....+.+.++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 88886543 21 2233445666655
No 171
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=5.7e-07 Score=96.63 Aligned_cols=127 Identities=24% Similarity=0.327 Sum_probs=80.8
Q ss_pred ccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc-ccCcccccEEe
Q 038105 411 WEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLD 488 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~ 488 (791)
|..|...+.+.|.+..+. ++.-++.|+.|++++|.+.+.. ++..+++|++|||++| .+..+|.- ...+ +|+.|+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheeee
Confidence 345556666666655443 3345677777778877776654 3677777777888777 56666642 2223 377777
Q ss_pred cCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCc
Q 038105 489 ISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGI 542 (791)
Q Consensus 489 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 542 (791)
+++|.++++ .++.+|.+|+.||+++|-+.+.-.-..++.+..|+.|++.||.+
T Consensus 239 lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 777777665 35677777777887777543322222256777777777777764
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=4e-05 Score=68.68 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 038105 74 IGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~ 95 (791)
|.|+|+.|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6799999999999999999987
No 173
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.00038 Score=74.22 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=96.7
Q ss_pred cccchHHHHHHHHHHhcc----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
++=|.+..+.++.+.+.. + ...+-|.+||++|+|||.||++++.++ .-. |+.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vP-----f~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVP-----FLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCc-----eEeecch-----
Confidence 467889888888887642 1 356789999999999999999999987 323 3333322
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCcc--------c-----ccccccCCCCCCC---C
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERV--------D-----LKKVGVPLPSRSN---S 181 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--------~-----~~~~~~~l~~~~~---~ 181 (791)
+|...+ .+..++.++++++. -+..+++++||++|... + ...+...+..... .
T Consensus 258 ---eivSGv--------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 258 ---EIVSGV--------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ---hhhccc--------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 222221 11223344444444 45689999999997420 0 1111111111110 1
Q ss_pred CCCcEEEE--EcCcHHH----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 182 PKNSAVVF--TTRFVDV----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 182 ~~~~~iiv--TtR~~~~----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
+.+ .+|| |+|-..+ .+....++.|.+..-++.+-.+++...+..-....+-+ .++|++..-|.
T Consensus 327 g~~-VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 327 GDP-VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCC-eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 222 2333 5563222 22234556788888888877788777765443222222 45566666664
No 174
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00013 Score=76.18 Aligned_cols=174 Identities=20% Similarity=0.200 Sum_probs=101.4
Q ss_pred CcccchHH-HHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC--EEEEEEeCCccCHHHHHHHH
Q 038105 49 PTVVGLQS-QLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 49 ~~~vGR~~-~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i 123 (791)
..++|-.- ....+...+.+. .....+.|+|+.|.|||.|++++++.. ..... .+++++. +.....+
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~s------e~f~~~~ 158 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTS------EDFTNDF 158 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccH------HHHHHHH
Confidence 33556443 223333334332 247899999999999999999999987 22223 3445442 2233333
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccc----cccccCCCCCCCCCCCcEEEEEcCc------
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDL----KKVGVPLPSRSNSPKNSAVVFTTRF------ 193 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~----~~~~~~l~~~~~~~~~~~iivTtR~------ 193 (791)
...+.- .....+++.. .-=++++||++-.... +++-..+... ...|.+||+|++.
T Consensus 159 v~a~~~-----------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l--~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 159 VKALRD-----------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNAL--LENGKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHh-----------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHH--HhcCCEEEEEcCCCchhhc
Confidence 332211 1233444444 3458999999643221 1122222221 2334589999963
Q ss_pred ---HHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 194 ---VDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 194 ---~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
+....++...-++++++.+.+....++.+.+...+...+ ++.+.-|++.....
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~---~ev~~~la~~~~~n 279 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIP---DEVLEFLAKRLDRN 279 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhcc
Confidence 233444556678999999999999999998877665444 45555555555443
No 175
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00063 Score=71.10 Aligned_cols=161 Identities=7% Similarity=0.007 Sum_probs=88.4
Q ss_pred cccc-hHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 50 TVVG-LQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 50 ~~vG-R~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.++| -+..++.+.+.+..+.-.+...++|+.|+|||++|+.+++.+-- ....... .+..-. ....+... .
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~cg~C~----~c~~~~~~-~ 76 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PCGTCT----NCKRIDSG-N 76 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CCCcCH----HHHHHhcC-C
Confidence 3566 77778888888877645667799999999999999999877521 1100000 000000 00000000 0
Q ss_pred CC-----CCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 129 LY-----TDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 129 ~~-----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
.+ .........++..+ +.+.+ .+.+=++|+|+++.... ...+...+.. .+.++.+|++|.++.-
T Consensus 77 hpD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE---Pp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE---PSGGTTAILLTENKHQ 152 (329)
T ss_pred CCCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC---CCCCceEEEEeCChHh
Confidence 00 00001111222222 22222 23445799999976533 3445555554 4566777777765432
Q ss_pred -Hh-hccccceEEeccCChHHHHHHHHHH
Q 038105 197 -CG-RMEDRRMFKVACLSDEDAWELFREK 223 (791)
Q Consensus 197 -~~-~~~~~~~~~l~~l~~~e~~~l~~~~ 223 (791)
.. -.+....+++.+++.++..+.+.+.
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22 2234567999999999998888654
No 176
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.6e-05 Score=53.73 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=26.8
Q ss_pred CcccEEeecCccccccccccccCcccccEEecCCCcccccc
Q 038105 458 PCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELP 498 (791)
Q Consensus 458 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp 498 (791)
++|++|++++| .+..+|..++.|++|++|++++|+++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 45777777777 56667766777777777777777776554
No 177
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0011 Score=68.26 Aligned_cols=174 Identities=10% Similarity=0.074 Sum_probs=97.6
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC-C--CCCEEE----EEEeCCccCHHHHHHHHHHHhCC
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-T--DFDYVI----WVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~--~f~~~~----wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
.-+.+.+.+..+.-.+...++|+.|+||+++|+.++..+-=.. . ..-+.| ++..+..+++..+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---------- 79 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL---------- 79 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE----------
Confidence 3455667777664467788999999999999999987652100 0 000000 0001111111000
Q ss_pred CCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcH-HHHhh-c
Q 038105 130 YTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCGR-M 200 (791)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~~-~ 200 (791)
..........++.+ .+.+.+. ++.=++|+|+++.+.. ...+...+.. .+.++.+|++|.++ .+... .
T Consensus 80 ~p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE---Pp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 EPIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE---PRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ccccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC---CCCCeEEEEEECChHhCchHHH
Confidence 00000111233333 3333332 3445788999987633 3445555554 55567777777654 33322 3
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
+....+.+.+++++++.+.+.+..... ...+...+..++|.|..
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLL 199 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHH
Confidence 345679999999999999998764211 23466778899999963
No 178
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.75 E-value=8.2e-05 Score=69.41 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=64.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
.++||-|+.++++.-...++ ..+.+.|.||+|+||||-+..+++.+- ....-+++.-++++..
T Consensus 27 ~dIVGNe~tv~rl~via~~g-nmP~liisGpPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASde--------------- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG-NMPNLIISGPPGTGKTTSILCLARELL-GDSYKEAVLELNASDE--------------- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCceEeeCCCCCchhhHHHHHHHHHh-ChhhhhHhhhccCccc---------------
Confidence 45899999999988776665 788999999999999999999998872 1112233333333333
Q ss_pred CCCCCcccccHHHHHHHHHHHhC-------CceEEEEEcCccCccc
Q 038105 129 LYTDSWKDKRLEEKAQDIFKTLS-------KKKFALLLDDLWERVD 167 (791)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~l~-------~~~~LlVlDdv~~~~~ 167 (791)
..++..+..|..+.+ ++--++|+|++|++.+
T Consensus 90 --------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 90 --------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred --------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh
Confidence 344445555554443 3345799999998744
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.74 E-value=6.5e-05 Score=68.32 Aligned_cols=90 Identities=21% Similarity=0.116 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
.+.+.|+|++|+||||+|+.++..+ ......+++++.+........... ..... .. .................
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLL-LIIVG--GK-KASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHH-hhhhh--cc-CCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999987 222234666665543322222111 00000 00 01222222333444444
Q ss_pred CCc-eEEEEEcCccCccc
Q 038105 151 SKK-KFALLLDDLWERVD 167 (791)
Q Consensus 151 ~~~-~~LlVlDdv~~~~~ 167 (791)
... ..++++|+++....
T Consensus 75 ~~~~~~viiiDei~~~~~ 92 (148)
T smart00382 75 RKLKPDVLILDEITSLLD 92 (148)
T ss_pred HhcCCCEEEEECCcccCC
Confidence 443 49999999976533
No 180
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.67 E-value=0.00059 Score=73.05 Aligned_cols=140 Identities=17% Similarity=0.129 Sum_probs=88.3
Q ss_pred ccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 038105 51 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 130 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 130 (791)
..-|...+.++.+.+...+. ++.|.|+-++||||+++.+.... ... .+++..........-..
T Consensus 19 ~~~~~~~~~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~--------- 81 (398)
T COG1373 19 EIERRKLLPRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELL--------- 81 (398)
T ss_pred hhhHHhhhHHHHhhcccCCc--EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHH---------
Confidence 34455666667766665522 99999999999999998887765 222 55655433211111101
Q ss_pred CCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHHhh------ccccc
Q 038105 131 TDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR------MEDRR 204 (791)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~------~~~~~ 204 (791)
+....+...-..++..++||+|....+|+.....+.+ .++. +|++|+-+...... .+...
T Consensus 82 ----------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d---~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 82 ----------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYD---RGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred ----------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHc---cccc-eEEEECCchhhhccchhhhcCCCce
Confidence 1111111111227789999999999999887766666 3444 78888876554221 13355
Q ss_pred eEEeccCChHHHHHHHH
Q 038105 205 MFKVACLSDEDAWELFR 221 (791)
Q Consensus 205 ~~~l~~l~~~e~~~l~~ 221 (791)
.+++-||+-.|-..+-.
T Consensus 148 ~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 148 DLELYPLSFREFLKLKG 164 (398)
T ss_pred eEEECCCCHHHHHhhcc
Confidence 79999999999776643
No 181
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00016 Score=78.02 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=114.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
+++||-+..++.|...+..+.-.+.-...|+-|+||||+||-++..+ .-.. .+-..|..| ++|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~~~~~ePC~~C~~C-----------k~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-NCENGPTAEPCGKCISC-----------KEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-cCCCCCCCCcchhhhhh-----------Hhhh
Confidence 34799999999999999987445677889999999999999998865 1111 111111111 1221
Q ss_pred HHhCCCC---CCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcH
Q 038105 125 KKIGLYT---DSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFV 194 (791)
Q Consensus 125 ~~l~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~ 194 (791)
.--.... +.-.....++ ++.|.+.. .++.=+.|||+|+-. ..+..+...+.. .+.+..+|+.|+++
T Consensus 84 ~g~~~DviEiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE---PP~hV~FIlATTe~ 159 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE---PPSHVKFILATTEP 159 (515)
T ss_pred cCCcccchhhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc---CccCeEEEEecCCc
Confidence 1100000 0001122333 23333333 234458899999743 556666666655 56667777777654
Q ss_pred HH--HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 195 DV--CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 195 ~~--~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
.- ..-.+....|.+..++.++-...+...+...++..+ ++....|+...+|...
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 22 223345678999999999999999999887665433 6677778888888554
No 182
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=4.2e-05 Score=86.87 Aligned_cols=104 Identities=24% Similarity=0.371 Sum_probs=58.7
Q ss_pred cceeEEEcccCCCCC--CC-C-CCCCCCccEEEecCCCCcccc-hhhhccCCcccEEeecCccccccccccccCcccccE
Q 038105 412 EMVRRLSLMRNSIDN--LP-T-VPTCPHLLTLFLNDNELTTIT-DDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQL 486 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~--l~-~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 486 (791)
.+|++|++++...-. -+ . ...+|+|++|.+.+-.+.... ...+.++|+|..||+|++ ++..+ .+++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 477778887643210 00 1 234667777777665542221 233456677777777776 55555 46666777777
Q ss_pred EecCCCccccc--chhhhcCCCCceeeccCccc
Q 038105 487 LDISNTEVEEL--PEELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 487 L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~ 517 (791)
|.+++=.+..- -..+-+|++|++||+|....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 76666444422 12455666777777765543
No 183
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0019 Score=67.28 Aligned_cols=175 Identities=12% Similarity=0.096 Sum_probs=98.4
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCC-C-EEE----EEEeCCccCHHHHHHHHHHHhCC
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD-NPTDF-D-YVI----WVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~-~~~~f-~-~~~----wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
.-+++.+.+..+.-.+...++|+.|+||+++|.+++..+-= ..... . +.| ++.....+++..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------- 80 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------- 80 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---------
Confidence 44667777777655678889999999999999998876510 00000 0 000 00011111110000
Q ss_pred CCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcHH-HHhh-c
Q 038105 130 YTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCGR-M 200 (791)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~~-~ 200 (791)
+...-.....++.. .+.+.+. +++=++|||+++.+.. -..+...+.. .+.++.+|++|.+++ +... .
T Consensus 81 p~~~~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 81 PEKGKSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE---PPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cccccccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC---CCCCeEEEEEECChhhChHHHH
Confidence 00000011233332 3333332 4456899999987633 3445555554 455676776666543 3322 3
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
+....+.+.+++.+++.+.+.+..+.. .+.+..++..++|.|..
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGA 200 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHH
Confidence 344578999999999999887643211 34477889999999964
No 184
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.63 E-value=0.0012 Score=72.20 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=94.8
Q ss_pred CcccchHHHHHHHHHHh---cc-----C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 49 PTVVGLQSQLEQVWRCL---VQ-----E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L---~~-----~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
.++.|.+...+.+.+.. .. + ...+.|.++|+.|+|||.+|+++++.+ ...| +-++.+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH-------
Confidence 45778776666555421 11 1 245789999999999999999999987 2222 1222111
Q ss_pred HHHHHHHhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCcccc--------------cccccCCCCCCCCCCC
Q 038105 120 QETIGKKIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERVDL--------------KKVGVPLPSRSNSPKN 184 (791)
Q Consensus 120 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~~--------------~~~~~~l~~~~~~~~~ 184 (791)
+... ..+..+...+.+.+. -...+++|+||+++....- ..+...+.. ...+
T Consensus 295 ---l~~~--------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---~~~~ 360 (489)
T CHL00195 295 ---LFGG--------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---KKSP 360 (489)
T ss_pred ---hccc--------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc---CCCc
Confidence 1110 011112222233332 2357899999999743110 001111111 2334
Q ss_pred cEEEEEcCcHHH-----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 185 SAVVFTTRFVDV-----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 185 ~~iivTtR~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
..||.||..... .+....+..+.++.-+.++-.++|..+......... .....+.+++.+.|.-
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~--~~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc--cccCHHHHHhhcCCCC
Confidence 445567754432 222244567889888999999999988765331111 1223566777777764
No 185
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=8.6e-05 Score=77.47 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=52.3
Q ss_pred ccceeEEEcccCCCCCCCCCCCCCCccEEEecCCC-CcccchhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 411 WEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNE-LTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
+.++++|++++|.+..+|.+ ..+|++|.+++|. +..++ +.+ .++|++|++++|..+..+|.+ |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccccccc------cceEEe
Confidence 46777888888888777743 2468888888866 33333 323 257888888888667777743 566666
Q ss_pred CCCc---ccccchhh
Q 038105 490 SNTE---VEELPEEL 501 (791)
Q Consensus 490 ~~~~---l~~lp~~~ 501 (791)
..+. +..+|.++
T Consensus 120 ~~n~~~~L~~LPssL 134 (426)
T PRK15386 120 KGSATDSIKNVPNGL 134 (426)
T ss_pred CCCCCcccccCcchH
Confidence 6553 34556543
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0024 Score=65.55 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=97.1
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEE-------EEEeCCccCHHHHHHHHHHHhCC
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVI-------WVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-------wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
.-+++.+.+..+.-.+...++|+.|+||+++|+.++..+-= ...-...| ++..+..+++..+.
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC-~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------- 80 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLC-QNYQSEACGFCHSCELMQSGNHPDLHVIK--------- 80 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcC-CCCCCCCCCCCHHHHHHHcCCCCCEEEEe---------
Confidence 44566667766645678999999999999999999876520 00000000 00000111100000
Q ss_pred CCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHH-HHh-hc
Q 038105 130 YTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCG-RM 200 (791)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~-~~ 200 (791)
+.........++.. .+.+.+. ++.=++|||+++.+. ....+...+.. .+.++.+|++|.+++ +.. ..
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE---PAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC---CCCCeEEEEEECChhhChHHHH
Confidence 00000112233332 3333332 334588999998763 33445555554 455676766665543 322 23
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+....+.+.+++.+++.+.+.+.. .+ .+..++..++|.|.....+
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 445679999999999999986541 11 1356788999999865443
No 187
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.59 E-value=0.0012 Score=66.65 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 56 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 56 ~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
..++++...+..+ +.|.|.|++|+|||++|+.++... .. ..+.+++....+..++
T Consensus 9 ~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 3445555555544 567799999999999999998754 22 2345555554444433
No 188
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=4e-05 Score=74.18 Aligned_cols=99 Identities=23% Similarity=0.320 Sum_probs=68.7
Q ss_pred EEEcccCCCCCCCCC----CCCCCccEEEecCCCCcccch--hhhccCCcccEEeecCcccc---ccccccccCcccccE
Q 038105 416 RLSLMRNSIDNLPTV----PTCPHLLTLFLNDNELTTITD--DFFQSMPCLTVLKMSDIRML---QQLPMGISKLVSLQL 486 (791)
Q Consensus 416 ~l~l~~~~~~~l~~~----~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~---~~lp~~~~~l~~L~~ 486 (791)
.+.+.++.+...-.+ ..++.++.+++.+|.+++... ..+.++|.|++|+++.|+.. +.+| -.+.+|++
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence 455556666554321 467888999999998775543 34778999999999988422 2233 35668899
Q ss_pred EecCCCccc--ccchhhhcCCCCceeeccCccc
Q 038105 487 LDISNTEVE--ELPEELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 487 L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~ 517 (791)
|-|.++.+. .....+..++.++.|+++.|+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 999888665 5555677888888888888743
No 189
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00058 Score=67.20 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=52.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCC-CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDN-PTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
.++|.++||+|.|||+|++++++.+.-. .+.|....-+.++.. .++.....+ ..+....+.+.|.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 5899999999999999999999987321 234443333333222 222222221 233456677778888
Q ss_pred hCCce--EEEEEcCccC
Q 038105 150 LSKKK--FALLLDDLWE 164 (791)
Q Consensus 150 l~~~~--~LlVlDdv~~ 164 (791)
+.++. +.+.+|+|+.
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 77654 5667899964
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.0017 Score=61.94 Aligned_cols=172 Identities=14% Similarity=0.177 Sum_probs=99.0
Q ss_pred cccchHHHHHH---HHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHH
Q 038105 50 TVVGLQSQLEQ---VWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 50 ~~vGR~~~~~~---l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 121 (791)
++||.+....+ |.+.|.+ +..++-|..+|+.|.|||.+|+++++.. +-.|- -|.+ -+
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l---~vka---------t~ 186 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLL---LVKA---------TE 186 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceE---Eech---------HH
Confidence 46887765544 3344544 2467899999999999999999999876 33321 1111 11
Q ss_pred HHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCc--------------ccccccccCCCCCCCCCCCcE
Q 038105 122 TIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWER--------------VDLKKVGVPLPSRSNSPKNSA 186 (791)
Q Consensus 122 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~--------------~~~~~~~~~l~~~~~~~~~~~ 186 (791)
-|.+.. ++....+.++.++.+ .-++++.+|+++.. ....++..-+... ..+.|.+
T Consensus 187 liGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi-~eneGVv 256 (368)
T COG1223 187 LIGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI-KENEGVV 256 (368)
T ss_pred HHHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc-ccCCceE
Confidence 122222 223334455555543 46899999999642 1111222222221 1345666
Q ss_pred EEEEcCcHHHHhh---ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 187 VVFTTRFVDVCGR---MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 187 iivTtR~~~~~~~---~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
.|-.|-.+...+. ......|+..--+++|-.+++..++..-.... +...+.++++.+|.-
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv----~~~~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV----DADLRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc----ccCHHHHHHHhCCCC
Confidence 6666655544322 12344678887889999999988875433221 233566777777753
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.56 E-value=0.0012 Score=77.40 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=97.9
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
.++.|.+...++|.+.+.- -...+.+.++|+.|+|||++|+++++.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH---
Confidence 3467888887777776531 1235678999999999999999999986 3332 222111
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc--------------ccccccCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD--------------LKKVGVPLPSRSNS 181 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~--------------~~~~~~~l~~~~~~ 181 (791)
++.... .+..+..++.+.... ...+.+|+||+++.... ...+...+.... .
T Consensus 522 -----~l~~~~--------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-~ 587 (733)
T TIGR01243 522 -----EILSKW--------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-E 587 (733)
T ss_pred -----HHhhcc--------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc-C
Confidence 111111 111223344444443 45679999999964311 011111122110 2
Q ss_pred CCCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 182 PKNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 182 ~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
..+..||.||..+...+. ...+..+.+...+.++-.++|+.+......... .....+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED----VDLEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc----CCHHHHHHHcCCCC
Confidence 234455656654433221 234567899999999999999877654332222 22556777787754
No 192
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.54 E-value=0.00061 Score=70.41 Aligned_cols=106 Identities=18% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCE-EEEEEeC-CccCHHHHHHHHHHHhCCCCCCc
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVS-KDLQLEKIQETIGKKIGLYTDSW 134 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~ 134 (791)
...++++.+..-++...+.|+|+.|+|||||++.+++..... +-+. ++|+-+. ...+..++.+.+...+..+..+.
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~--~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN--HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 344577777653345677999999999999999999877322 2233 3454444 45577888888888776543211
Q ss_pred cc---ccHHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 135 KD---KRLEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 135 ~~---~~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.. ....+....+.+++ +++.++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 11222233333333 47899999999943
No 193
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.50 E-value=0.0035 Score=68.57 Aligned_cols=201 Identities=16% Similarity=0.145 Sum_probs=124.3
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccC---C--CCCCCEEEEEEeCCccCHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVD---N--PTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~---~--~~~f~~~~wv~~~~~~~~~~ 118 (791)
+..+-+||.|..+|...+.. ++....+.|.|-+|.|||..+..|.+.+.. . -..|. .+.+++-.-.+..+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 56678999999999888754 245569999999999999999999886521 1 12343 45667666677999
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCccc-----ccccccCCCCCCCCCCCcEEE
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERVD-----LKKVGVPLPSRSNSPKNSAVV 188 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~~~~~ii 188 (791)
++..|...+.... .........+..++. .++.++++|++|.... +..+. -++ ...+++++
T Consensus 474 ~Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f-dWp----t~~~sKLv 543 (767)
T KOG1514|consen 474 IYEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF-DWP----TLKNSKLV 543 (767)
T ss_pred HHHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHh-cCC----cCCCCceE
Confidence 9999999987542 223334444444443 3579999999975422 22221 122 24456665
Q ss_pred EEcCc--HHHHhhc--------cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 038105 189 FTTRF--VDVCGRM--------EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGR 258 (791)
Q Consensus 189 vTtR~--~~~~~~~--------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 258 (791)
|-+=. ......+ -....+.++|.++++-.+++..+....+.-.+...+=.+++|+...|..-.|+.+.-+
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 53321 1111110 1234688999999999999888876543122222333455666655555555555444
Q ss_pred H
Q 038105 259 A 259 (791)
Q Consensus 259 ~ 259 (791)
+
T Consensus 624 A 624 (767)
T KOG1514|consen 624 A 624 (767)
T ss_pred H
Confidence 3
No 194
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.48 E-value=0.00022 Score=65.47 Aligned_cols=102 Identities=26% Similarity=0.387 Sum_probs=66.0
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc--cccCcccccEEecC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM--GISKLVSLQLLDIS 490 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~ 490 (791)
+...+++++|.+..+..++.++.|.+|.+..|.++.+.+..-..+++|..|.+.+| .+..+.. .+..|+.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 45567777777777777777777777777777777777665555667777777777 4444322 24556777777777
Q ss_pred CCcccccch----hhhcCCCCceeeccCc
Q 038105 491 NTEVEELPE----ELKALVNLKCLNLDWT 515 (791)
Q Consensus 491 ~~~l~~lp~----~~~~l~~L~~L~l~~~ 515 (791)
+|.++.-.. -+..+++|+.||+.+-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 776553321 2456666677666553
No 195
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=2.2e-05 Score=66.98 Aligned_cols=107 Identities=24% Similarity=0.351 Sum_probs=73.3
Q ss_pred CccEEEecCCCCcccch--hhhccCCcccEEeecCccccccccccccC-cccccEEecCCCcccccchhhhcCCCCceee
Q 038105 435 HLLTLFLNDNELTTITD--DFFQSMPCLTVLKMSDIRMLQQLPMGISK-LVSLQLLDISNTEVEELPEELKALVNLKCLN 511 (791)
Q Consensus 435 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~-l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~ 511 (791)
.+..++++.|.+-.+.. ..+.....|...++++| .+...|+.|.. ++.+.+|++.+|.|+.+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34556677776543332 22455667777788887 67777777654 3477888888888888888888888888888
Q ss_pred ccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 512 LDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 512 l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
+++|++ ...|.- +..+.+|..|+..+|....
T Consensus 107 l~~N~l-~~~p~v-i~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 107 LRFNPL-NAEPRV-IAPLIKLDMLDSPENARAE 137 (177)
T ss_pred cccCcc-ccchHH-HHHHHhHHHhcCCCCcccc
Confidence 888876 455544 4557777777777776443
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=3.4e-05 Score=87.60 Aligned_cols=138 Identities=21% Similarity=0.196 Sum_probs=69.9
Q ss_pred CCccEEEecCCC-Cc-ccchhhhccCCcccEEeecCccccc-cccccccCcccccEEecCCCcccccchhhhcCCCCcee
Q 038105 434 PHLLTLFLNDNE-LT-TITDDFFQSMPCLTVLKMSDIRMLQ-QLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCL 510 (791)
Q Consensus 434 ~~L~~L~l~~~~-~~-~~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L 510 (791)
.+|+.|+++|.. +. +.+...-..+|.|+.|.+++-.... .+-.-..++++|..||+++++++.+ .++++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 466777776655 22 2222323456777777776642211 1222344566777777777776666 566777777777
Q ss_pred eccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeech
Q 038105 511 NLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSF 576 (791)
Q Consensus 511 ~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 576 (791)
.+.+-.+.....-..+.+|++|+.|+++........ .......+.-..|++|+.||+|++.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~----~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT----KIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccch----HHHHHHHHhcccCccccEEecCCcch
Confidence 666554421111111446666666666654322211 01112223334455666666655443
No 197
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.45 E-value=0.00095 Score=78.14 Aligned_cols=172 Identities=16% Similarity=0.157 Sum_probs=95.1
Q ss_pred cccchHHHHHHHHHHhcc---------C---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~---------~---~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|.+..++++.+.+.- . ...+.|.|+|+.|+|||++|+++++.. ... .+.++...
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~---~i~i~~~~----- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAY---FISINGPE----- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCe---EEEEecHH-----
Confidence 378999999999887631 0 234679999999999999999999876 222 22333211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHH-HHhCCceEEEEEcCccCccc-------------ccccccCCCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIF-KTLSKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~ 183 (791)
+ .... .....+.+..+. ......+.+|+||+++.... ...+...+... ...
T Consensus 248 -i----~~~~--------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l--~~~ 312 (733)
T TIGR01243 248 -I----MSKY--------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--KGR 312 (733)
T ss_pred -H----hccc--------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc--ccC
Confidence 1 1100 011122222233 33345678999999964310 11122222221 122
Q ss_pred CcEEEE-EcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 184 NSAVVF-TTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 184 ~~~iiv-TtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
+..+++ ||....... .......+.+...+.++..+++..+........ ......+++.+.|.--
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCH
Confidence 333444 454332211 112345688888899999999886654322111 2235678888888653
No 198
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=4.9e-05 Score=73.56 Aligned_cols=86 Identities=22% Similarity=0.301 Sum_probs=47.1
Q ss_pred cccccEEecCCCccc---ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchH
Q 038105 481 LVSLQLLDISNTEVE---ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVA 557 (791)
Q Consensus 481 l~~L~~L~L~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 557 (791)
+++++.|||.+|.|+ ++..-+.+|+.|+.|+++.|.+...+..- -....+|++|-+.+..+..- ..-
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~---------~~~ 139 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWT---------QST 139 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChh---------hhh
Confidence 455666666666655 33334556677777777766553322210 02455667777666654431 223
Q ss_pred HHhcCCCCCcEEEEEeech
Q 038105 558 EELLGLKHLEVLEITFRSF 576 (791)
Q Consensus 558 ~~l~~l~~L~~L~l~~~~~ 576 (791)
..+..++.++.|.++.|..
T Consensus 140 s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 140 SSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred hhhhcchhhhhhhhccchh
Confidence 3455566666666666644
No 199
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.44 E-value=7.8e-05 Score=71.28 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=105.9
Q ss_pred CCCCccEEEecCCCCcccchh----hhccCCcccEEeecCcccc----ccccc-------cccCcccccEEecCCCccc-
Q 038105 432 TCPHLLTLFLNDNELTTITDD----FFQSMPCLTVLKMSDIRML----QQLPM-------GISKLVSLQLLDISNTEVE- 495 (791)
Q Consensus 432 ~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~----~~lp~-------~~~~l~~L~~L~L~~~~l~- 495 (791)
.+..+..+++|||.+...... .+.+-.+|++.+++.- .. ..+|+ .+-.|++|+..+|+.|-+.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 356677777777776543322 2445567777777654 22 12332 3446777888888877665
Q ss_pred ccch----hhhcCCCCceeeccCcccccccchhH-------------hhcCcCCCeeeeeecCccccccccccchhchHH
Q 038105 496 ELPE----ELKALVNLKCLNLDWTDVLVEVPQQL-------------LSNFSRLRVLRMFATGIRSVYGRFSSWYENVAE 558 (791)
Q Consensus 496 ~lp~----~~~~l~~L~~L~l~~~~~~~~~p~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 558 (791)
..|+ -+.+-++|.+|.+++|-+ +.+..+- ..+-+.|++.....|.+.+.+. .....
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~------~~~a~ 179 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK------ELSAA 179 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH------HHHHH
Confidence 3343 256667788888877744 3222111 2345666666666666443211 11223
Q ss_pred HhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccc
Q 038105 559 ELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDM 638 (791)
Q Consensus 559 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 638 (791)
.|....+|+.+.+..|.+.-- +.+......+..+.+|+.|+|..|.++..-..
T Consensus 180 ~l~sh~~lk~vki~qNgIrpe----------------------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~----- 232 (388)
T COG5238 180 LLESHENLKEVKIQQNGIRPE----------------------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR----- 232 (388)
T ss_pred HHHhhcCceeEEeeecCcCcc----------------------hhHHHHHHHHHHhCcceeeeccccchhhhhHH-----
Confidence 344446777777777766421 01112223456778999999999876542111
Q ss_pred ccccccccccCCCCEEEEecC
Q 038105 639 VQKSRQPYVFRSLDKITVSSC 659 (791)
Q Consensus 639 ~~l~~l~~~~~~L~~L~l~~~ 659 (791)
-|.......+.|+.|.+.+|
T Consensus 233 -~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 233 -YLADALCEWNLLRELRLNDC 252 (388)
T ss_pred -HHHHHhcccchhhhccccch
Confidence 11111223455777777777
No 200
>PRK08116 hypothetical protein; Validated
Probab=97.43 E-value=0.00023 Score=71.73 Aligned_cols=103 Identities=25% Similarity=0.299 Sum_probs=58.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.|+|..|+|||.||.++++.+.. ....++|++ ..+++..+........ ... ...+.+.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l 176 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSL 176 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHh
Confidence 356999999999999999999999832 234566766 3445555544432111 111 22334445
Q ss_pred CCceEEEEEcCcc--Ccccccc--cccCCCCCCCCCCCcEEEEEcCc
Q 038105 151 SKKKFALLLDDLW--ERVDLKK--VGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 151 ~~~~~LlVlDdv~--~~~~~~~--~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
.+-. ||||||+. ...+|.. +...+... ...+..+|+||..
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r--~~~~~~~IiTsN~ 220 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSR--YRKGLPTIVTTNL 220 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHH--HHCCCCEEEECCC
Confidence 5444 89999993 2333321 21112110 1234568888863
No 201
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.42 E-value=0.0016 Score=76.41 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=84.4
Q ss_pred CcccchHHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
.+++|.+...+++.+++.. ....+++.++|+.|+|||++|+.++..+ ...|- -++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~---~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFV---RFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeE---EEeCCCcccHHHHcC--
Confidence 3478999999998886542 2234689999999999999999999987 33332 222222222222211
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc------ccccccC--------CCC----CCCCCCCc
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD------LKKVGVP--------LPS----RSNSPKNS 185 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~--------l~~----~~~~~~~~ 185 (791)
....+.........+.+...-...+ +++||+++.... ...+... +.+ ......+.
T Consensus 392 ------~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 392 ------HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ------CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 0001111111222233333323334 789999975421 0111111 111 00001234
Q ss_pred EEEEEcCcHHHH--hhccccceEEeccCChHHHHHHHHHHh
Q 038105 186 AVVFTTRFVDVC--GRMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 186 ~iivTtR~~~~~--~~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
.+|.||...... .......++++.+++.++-.+++.++.
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 445555432211 111233578999999999988887764
No 202
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.42 E-value=0.0046 Score=65.20 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC----HHHHHHHHHHHh
Q 038105 54 LQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ----LEKIQETIGKKI 127 (791)
Q Consensus 54 R~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~----~~~~~~~i~~~l 127 (791)
|+...+.+.+.+.+. ....+|+|.|.=|+|||++.+.+.+.+......--.+++++.....+ ...++.++..++
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 456777888888764 57889999999999999999999998833211223455555433332 344444444443
No 203
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.036 Score=58.02 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL- 150 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l- 150 (791)
|--.++||+|.|||+++.++|+.+ .|+. +=+..+.. .+-.+ +++.|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydI-ydLeLt~v-----------------------~~n~d----Lr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDI-YDLELTEV-----------------------KLDSD----LRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCce-EEeeeccc-----------------------cCcHH----HHHHHH
Confidence 567899999999999999999987 4442 22222111 11111 22333
Q ss_pred -CCceEEEEEcCccCccc-----------cc---------ccccCCCCCCCCCCC-cEE-EEEcCcHHH-----Hhhccc
Q 038105 151 -SKKKFALLLDDLWERVD-----------LK---------KVGVPLPSRSNSPKN-SAV-VFTTRFVDV-----CGRMED 202 (791)
Q Consensus 151 -~~~~~LlVlDdv~~~~~-----------~~---------~~~~~l~~~~~~~~~-~~i-ivTtR~~~~-----~~~~~~ 202 (791)
...+-+||+.|+|-..+ .+ .+..+ .+..|+..| -|| |+||-..+- .+..+-
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNf-iDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNF-LDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhh-hccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence 23567888888863311 11 01111 123344442 244 557764333 333334
Q ss_pred cceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhc
Q 038105 203 RRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAY 262 (791)
Q Consensus 203 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~ 262 (791)
+..+.|.--+.+.-..|+..+.+.+. ...+..+|.+...|.-+.=+.++..+-.
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 55789999999999999999987643 1456666766667766655666665543
No 204
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0012 Score=69.29 Aligned_cols=45 Identities=27% Similarity=0.329 Sum_probs=35.9
Q ss_pred ccchH---HHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 51 VVGLQ---SQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 51 ~vGR~---~~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+-|-| +|++++++.|.+. .=++-|.++|++|.|||-||++++.+.
T Consensus 306 VkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 306 VKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 45554 4788888888762 235789999999999999999998875
No 205
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0042 Score=65.44 Aligned_cols=163 Identities=18% Similarity=0.184 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
+...|.+.|++|+|||+||.+++.. ..|..+--++.... .|.+ +........+.....
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~m-------------iG~s----EsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDM-------------IGLS----ESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHc-------------cCcc----HHHHHHHHHHHHHHh
Confidence 4567889999999999999999875 46776544442221 1111 111122222233333
Q ss_pred hCCceEEEEEcCccCcccccccccC------------CCCCCCCCCCcEEEEEcCcHHHHhhcc----ccceEEeccCCh
Q 038105 150 LSKKKFALLLDDLWERVDLKKVGVP------------LPSRSNSPKNSAVVFTTRFVDVCGRME----DRRMFKVACLSD 213 (791)
Q Consensus 150 l~~~~~LlVlDdv~~~~~~~~~~~~------------l~~~~~~~~~~~iivTtR~~~~~~~~~----~~~~~~l~~l~~ 213 (791)
-+..=-.||+||++..-+|-.++.. +...+..++.--|+-||....+...++ ...+|+++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3445579999999876665544332 333221222333444666667766654 345789998887
Q ss_pred -HHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 214 -EDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 214 -~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
++..+.+.+.--- .+...+..+++...++ +-.+|+.+-..+
T Consensus 675 ~~~~~~vl~~~n~f----sd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELNIF----SDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHccCC----CcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7778877665311 1222344555555554 333444444443
No 206
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00028 Score=73.70 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=82.8
Q ss_pred CCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC-cccccchhhhcCCCCce
Q 038105 431 PTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT-EVEELPEELKALVNLKC 509 (791)
Q Consensus 431 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~-~l~~lp~~~~~l~~L~~ 509 (791)
..+.+++.|++++|.+..++ . + ..+|+.|.+++|..+..+|..+ ..+|++|++++| .+..+|.. |+.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP-~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLP-V-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCcccC-C-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cce
Confidence 45688999999999887776 2 2 2469999999988888888755 358999999998 77777754 566
Q ss_pred eeccCccc--ccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCC-CCCcEEEEEeechhhHHHhhhcc
Q 038105 510 LNLDWTDV--LVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGL-KHLEVLEITFRSFEAYQTFLSSQ 586 (791)
Q Consensus 510 L~l~~~~~--~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~ 586 (791)
|++.++.. .+.+|. +|+.|.+.++..... ...+. .+ ++|+.|++++|....+ ..
T Consensus 117 L~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~~~--------~~lp~---~LPsSLk~L~Is~c~~i~L-----P~ 173 (426)
T PRK15386 117 LEIKGSATDSIKNVPN-------GLTSLSINSYNPENQ--------ARIDN---LISPSLKTLSLTGCSNIIL-----PE 173 (426)
T ss_pred EEeCCCCCcccccCcc-------hHhheeccccccccc--------ccccc---ccCCcccEEEecCCCcccC-----cc
Confidence 66665432 345554 345555543220000 00110 11 4677888877664422 12
Q ss_pred cccCCcccceeec
Q 038105 587 KLRSCTQAPFLYK 599 (791)
Q Consensus 587 ~~~~~l~~l~l~~ 599 (791)
.+...++.|.+..
T Consensus 174 ~LP~SLk~L~ls~ 186 (426)
T PRK15386 174 KLPESLQSITLHI 186 (426)
T ss_pred cccccCcEEEecc
Confidence 2445566666544
No 207
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0032 Score=68.37 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=93.0
Q ss_pred CcccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
+++=|-|+...+|.+.+.- + ..++-|.++|++|+|||++|+++++.. ..+|-. +...
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFls-----vkgp--- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLS-----VKGP--- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCeee-----ccCH---
Confidence 3444577666666655431 1 467899999999999999999999976 445422 2111
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCccc-------------ccccccCCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSP 182 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~ 182 (791)
++.... .+..+..+..+++..+ -.+.++.||++|.... +..+..-+.. ..
T Consensus 503 -----EL~sk~--------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG---~e 566 (693)
T KOG0730|consen 503 -----ELFSKY--------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG---LE 566 (693)
T ss_pred -----HHHHHh--------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc---cc
Confidence 111111 1222334444444443 4679999999974311 1111111222 22
Q ss_pred CCcEEEE---EcCcHHH----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 183 KNSAVVF---TTRFVDV----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 183 ~~~~iiv---TtR~~~~----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
....|+| |.|...+ .+-...+..+-++.-+.+.-.++|+.++......+.-+ .+++++...|.
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~ 636 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVD----LEELAQATEGY 636 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcccc----HHHHHHHhccC
Confidence 2223333 4453322 12123455677777777778889999887655433323 44555555554
No 208
>PRK07261 topology modulation protein; Provisional
Probab=97.36 E-value=0.00045 Score=64.71 Aligned_cols=66 Identities=21% Similarity=0.404 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCC
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSK 152 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 152 (791)
.|+|+|++|+||||||++++..+....-+.+...|-.. +...+.++..+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48899999999999999998775111113333444111 1222344566666666766
Q ss_pred ceEEEEEcCcc
Q 038105 153 KKFALLLDDLW 163 (791)
Q Consensus 153 ~~~LlVlDdv~ 163 (791)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 6788873
No 209
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=0.00043 Score=64.43 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEE
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIW 107 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~w 107 (791)
+.|.|+|++|+||||+|+++++.+-...-+++..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987222235666665
No 210
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.005 Score=58.34 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=95.2
Q ss_pred ccc-hHHHHHHHHHHhcc---C---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 51 VVG-LQSQLEQVWRCLVQ---E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 51 ~vG-R~~~~~~l~~~L~~---~---------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
+|| -+..+++|.+.+.- . ..++-|.++|+.|.|||-||+++++.- ...|+.++.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH---H
Confidence 555 56677777766532 1 356889999999999999999999864 2334455443 1
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCcc------------cc----cccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERV------------DL----KKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~------------~~----~~~~~~l~~~~~ 180 (791)
-+++-|.+ -.-+..+++-..+ .-+.+|++|++++.. .. -++...+..+.
T Consensus 217 lvqk~ige-------------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe- 282 (404)
T KOG0728|consen 217 LVQKYIGE-------------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE- 282 (404)
T ss_pred HHHHHhhh-------------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc-
Confidence 22222211 0112222322223 357899999997530 01 11222233222
Q ss_pred CCCCcEEEEEc-C----cHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHH
Q 038105 181 SPKNSAVVFTT-R----FVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTV 242 (791)
Q Consensus 181 ~~~~~~iivTt-R----~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i 242 (791)
...+.+||..| | ++...+....++.|++.+-+++.-.++++-+....+....-++..+|+++
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm 349 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKM 349 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhC
Confidence 34566777766 4 22223333456789999999988888888877655544444444444433
No 211
>PRK08181 transposase; Validated
Probab=97.35 E-value=0.00043 Score=69.35 Aligned_cols=78 Identities=23% Similarity=0.263 Sum_probs=46.8
Q ss_pred HHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHH
Q 038105 63 RCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEK 142 (791)
Q Consensus 63 ~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 142 (791)
+|+... ..+.++|+.|+|||.||.++++... .....++|+++ .++...+.... ........
T Consensus 101 ~~~~~~---~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~-------~~~~~~~~ 161 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVAR-------RELQLESA 161 (269)
T ss_pred HHHhcC---ceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHH-------hCCcHHHH
Confidence 455433 5699999999999999999998762 22344566653 44555443321 11122222
Q ss_pred HHHHHHHhCCceEEEEEcCccC
Q 038105 143 AQDIFKTLSKKKFALLLDDLWE 164 (791)
Q Consensus 143 ~~~l~~~l~~~~~LlVlDdv~~ 164 (791)
. +.+. +.=||||||+..
T Consensus 162 l----~~l~-~~dLLIIDDlg~ 178 (269)
T PRK08181 162 I----AKLD-KFDLLILDDLAY 178 (269)
T ss_pred H----HHHh-cCCEEEEecccc
Confidence 2 2222 335999999953
No 212
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.34 E-value=0.0033 Score=62.55 Aligned_cols=171 Identities=19% Similarity=0.193 Sum_probs=97.2
Q ss_pred CcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~ 124 (791)
..++|-.++-.++.+++.. .++..-|.|+||.|.|||+|......+. +..-+..+-|....... -+-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 5579999999999999876 2577889999999999999987776663 22223333333333221 223444444
Q ss_pred HHhCCCC--CCcccccHHHHHHHHHHHhC------CceEEEEEcCccCccc------ccccccCCCCCCCCCCCcEEEEE
Q 038105 125 KKIGLYT--DSWKDKRLEEKAQDIFKTLS------KKKFALLLDDLWERVD------LKKVGVPLPSRSNSPKNSAVVFT 190 (791)
Q Consensus 125 ~~l~~~~--~~~~~~~~~~~~~~l~~~l~------~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~~~iivT 190 (791)
+++.... .....++..+....+...+. +.++++|+|++|-... +..+...-.. ...+-+.|-+|
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs--~r~Piciig~T 178 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQS--ARAPICIIGVT 178 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhh--cCCCeEEEEee
Confidence 4443211 11123344445555555553 3469999999964311 1111111111 02344566789
Q ss_pred cCcHH-------HHhhccccceEEeccCChHHHHHHHHHHh
Q 038105 191 TRFVD-------VCGRMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 191 tR~~~-------~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
||-.. +..++.-..++-++.+.-++..++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 99432 22222222355667777788888877765
No 213
>PRK04132 replication factor C small subunit; Provisional
Probab=97.33 E-value=0.0039 Score=71.95 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=95.3
Q ss_pred EEc--CCCCcHHHHHHHHHhcccCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCC
Q 038105 76 LYG--MGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSK 152 (791)
Q Consensus 76 i~G--~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 152 (791)
+.| |.|+||||+|.++++++-. ..+ ..++-++++...+...+...+-....... .-..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g--~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----------------~~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFG--ENWRHNFLELNASDERGINVIREKVKEFARTKP-----------------IGGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhc--ccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----------------cCCC
Confidence 347 8899999999999998621 222 35777888776555544433322111110 0012
Q ss_pred ceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHH-HHhh-ccccceEEeccCChHHHHHHHHHHhCccc
Q 038105 153 KKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCGR-MEDRRMFKVACLSDEDAWELFREKVGEET 228 (791)
Q Consensus 153 ~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 228 (791)
+.-++|||+++... ....+...+.. .+...++|+++.+.. +... .+....+.+.+++.++..+.+...+...+
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg 706 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 706 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 45799999998764 34444444443 344566776665432 2222 23456899999999999988887765443
Q ss_pred cCCCCChHHHHHHHHHHcCCCchH
Q 038105 229 IESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
...+ ++....|+..++|.+..
T Consensus 707 i~i~---~e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 707 LELT---EEGLQAILYIAEGDMRR 727 (846)
T ss_pred CCCC---HHHHHHHHHHcCCCHHH
Confidence 2222 56788999999998853
No 214
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.01 Score=61.64 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=55.4
Q ss_pred ceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-HHHhh-ccccceEEeccCChHHHHHHHHHHhCccc
Q 038105 153 KKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCGR-MEDRRMFKVACLSDEDAWELFREKVGEET 228 (791)
Q Consensus 153 ~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 228 (791)
+.=++|||+++.+. ....+...+.. .+.++.+|++|.++ .+... .+....+.+.+++.++..+.+.+. +.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~-- 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEE---PPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV-- 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcC---CCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC--
Confidence 34488899998763 33444444544 45566666655543 33222 234468999999999999999775 11
Q ss_pred cCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 229 IESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 229 ~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
. + ...++..++|.|.....
T Consensus 206 ---~---~--~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 ---A---D--ADALLAEAGGAPLAALA 224 (342)
T ss_pred ---C---h--HHHHHHHcCCCHHHHHH
Confidence 1 1 23357788999975433
No 215
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.32 E-value=0.00094 Score=66.06 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=38.9
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
|-+.|..+ +...++.|+|++|+|||++|.+++.... .....++|++.. ..+.+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHH
Confidence 33444333 3468999999999999999999988762 334678999987 444433
No 216
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.31 E-value=0.00044 Score=66.07 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCc-ccccHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSW-KDKRLEEKAQDIFK 148 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 148 (791)
++++.++|+.|+||||.+.+++..+. ..-..+..++.... ....+-++..++.++++.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 47999999999999999999988873 22456778887643 355677788888888653211 12234444443333
Q ss_pred HhC-CceEEEEEcCc
Q 038105 149 TLS-KKKFALLLDDL 162 (791)
Q Consensus 149 ~l~-~~~~LlVlDdv 162 (791)
..+ ++.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 333 33357777776
No 217
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0011 Score=69.89 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=83.2
Q ss_pred cccchHHHHHHHHHHhccCCCceE-EEEEcCCCCcHHHHHHHHHhcccCCCC------------------CCCEEEEEEe
Q 038105 50 TVVGLQSQLEQVWRCLVQEPAAGI-IGLYGMGGVGKTTLLTQINNKFVDNPT------------------DFDYVIWVVV 110 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~~~~~~v-v~i~G~gGiGKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~ 110 (791)
.++|-+..+.++..+....++.+. +.++|+.|+||||+|.++++.+-.... ....+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 467888889999998885434454 999999999999999999988721110 1123444444
Q ss_pred CCccC---HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCc
Q 038105 111 SKDLQ---LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNS 185 (791)
Q Consensus 111 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~ 185 (791)
+.... ..+..+++.+....... .++.-++++|+++.+.. -..+...+.. ....+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lEe---p~~~~ 140 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLEE---PPKNT 140 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc---CCCCe
Confidence 43333 23333333333322110 24567999999987633 2333333443 45567
Q ss_pred EEEEEcCcH-HHHhh-ccccceEEeccCCh
Q 038105 186 AVVFTTRFV-DVCGR-MEDRRMFKVACLSD 213 (791)
Q Consensus 186 ~iivTtR~~-~~~~~-~~~~~~~~l~~l~~ 213 (791)
.+|++|.++ .+... .+....+++.+.+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchH
Confidence 777777633 22221 22334667766333
No 218
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.30 E-value=0.0064 Score=62.79 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=37.2
Q ss_pred eEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 205 MFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 205 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
++++++++.+|+..++..+....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999988766554333344556677777779999654
No 219
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0027 Score=69.76 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=89.0
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
..+-+|-++-.+++++.|.- .-..++++++||+|||||+|++.+++.. ...| +-++++.-.+-.++.--
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCE---EEEecCccccHHHhccc
Confidence 34459999999999998742 2245899999999999999999999987 3333 22333333332222111
Q ss_pred HHHHhCCCCCCcccccHHHHHHHHHHHh---CCceEEEEEcCccCccc----------cc--------cc-ccCCCCCCC
Q 038105 123 IGKKIGLYTDSWKDKRLEEKAQDIFKTL---SKKKFALLLDDLWERVD----------LK--------KV-GVPLPSRSN 180 (791)
Q Consensus 123 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----------~~--------~~-~~~l~~~~~ 180 (791)
.......+..++.+-+ +.+.=+++||++|.+.. ++ .+ .+++..
T Consensus 396 ------------RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev--- 460 (782)
T COG0466 396 ------------RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV--- 460 (782)
T ss_pred ------------cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC---
Confidence 1111222222233322 44556889999975411 00 01 011110
Q ss_pred CCCCcEEEE-EcC-cHH-H-HhhccccceEEeccCChHHHHHHHHHHhC
Q 038105 181 SPKNSAVVF-TTR-FVD-V-CGRMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 181 ~~~~~~iiv-TtR-~~~-~-~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
.-.=|.|++ ||- +-. + ....+.-.+|++.+.+++|-.++-+++.-
T Consensus 461 ~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 461 PYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred ccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 111233433 333 222 1 12234456899999999999999888863
No 220
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.013 Score=64.91 Aligned_cols=93 Identities=19% Similarity=0.252 Sum_probs=61.4
Q ss_pred CcccchHHHHHHHHHHhcc----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
+++=|-++...+|.+-+.- + ..+.-|.++|++|.|||-+|++|+.+. . .-|+++-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 4455677777777766542 1 235689999999999999999999886 2 335555433
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCc
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWER 165 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 165 (791)
+++.. ..+..++..++++++.+ -.++.|.||++|+.
T Consensus 740 ----ELLNM--------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ----ELLNM--------YVGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHHHH--------HhcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 12111 12233455566666665 48999999999853
No 221
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=0.0086 Score=58.00 Aligned_cols=208 Identities=13% Similarity=0.181 Sum_probs=119.9
Q ss_pred cccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCcc------------
Q 038105 50 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDL------------ 114 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~------------ 114 (791)
.+.++++...++....... +.+...++|++|.||-|.+-.+.+++.... -.-+..-|.+.+...
T Consensus 14 ~l~~~~e~~~~Lksl~~~~-d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTG-DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hcccHHHHHHHHHHhcccC-CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 3678888888888777644 789999999999999999988888763311 122233344332220
Q ss_pred ---------CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceE-EEEEcCccCc--ccccccccCCCCCCCCC
Q 038105 115 ---------QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKF-ALLLDDLWER--VDLKKVGVPLPSRSNSP 182 (791)
Q Consensus 115 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 182 (791)
.-+.+.++++.++....+ . +....+++ ++|+-.+++. +.-.+++..+.. ..
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q------i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk---Ys 155 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ------I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEK---YS 155 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc------h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHH---Hh
Confidence 112333333333321100 0 00122343 5666666543 111122222222 23
Q ss_pred CCcEEEE----EcCcHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc-hHHHHHH
Q 038105 183 KNSAVVF----TTRFVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP-LALITIG 257 (791)
Q Consensus 183 ~~~~iiv----TtR~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 257 (791)
..+|+|+ |||.-+..+ +..-.+++...+++|....+.+.+...+...+ .+.+.+|+++++|+- .||-++-
T Consensus 156 ~~~RlIl~cns~SriIepIr--SRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE 230 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIR--SRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLE 230 (351)
T ss_pred cCceEEEEecCcccchhHHh--hheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHH
Confidence 4566666 333222211 22346899999999999999999988776555 789999999999974 3443333
Q ss_pred HHhhcC---------CCHHHHHHHHHHHhhhc
Q 038105 258 RAMAYK---------KTPEEWRYAIEVLRRSA 280 (791)
Q Consensus 258 ~~l~~~---------~~~~~w~~~l~~l~~~~ 280 (791)
+.-..+ -..-+|+.++.++....
T Consensus 231 ~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i 262 (351)
T KOG2035|consen 231 AVRVNNEPFTANSQVIPKPDWEIYIQEIARVI 262 (351)
T ss_pred HHHhccccccccCCCCCCccHHHHHHHHHHHH
Confidence 221111 14557998888776553
No 222
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.26 E-value=0.0016 Score=75.67 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=88.7
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
..+.+|.+...+++.+++.. .....++.++|+.|+||||+|+.++... ...|- -++++...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~---~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYV---RMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEE---EEEcCCCCCHHHhccc
Confidence 44579999999999988763 1245689999999999999999999876 23332 2333333333222211
Q ss_pred HHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc------ccccccCCCC------------CCCCCCC
Q 038105 123 IGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD------LKKVGVPLPS------------RSNSPKN 184 (791)
Q Consensus 123 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~------------~~~~~~~ 184 (791)
-....+ .......+.+...-..++ +++||+++.... ...+...+.. ....-.+
T Consensus 395 ~~~~~g--------~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIG--------SMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCC--------CCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 111111 011122333332222334 688999975421 1111111110 0001123
Q ss_pred cEEEEEcCcHHHHh-hccccceEEeccCChHHHHHHHHHHhC
Q 038105 185 SAVVFTTRFVDVCG-RMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 185 ~~iivTtR~~~~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
..+|.|+.+..+.. ..+...++++.+++.+|-.++.+++..
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhhh
Confidence 44455665432211 112335789999999999999888763
No 223
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.26 E-value=0.00033 Score=64.32 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=48.7
Q ss_pred cccEEeecCccccccccccccCcccccEEecCCCcccccchhhh-cCCCCceeeccCcccc--cccchhHhhcCcCCCee
Q 038105 459 CLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELK-ALVNLKCLNLDWTDVL--VEVPQQLLSNFSRLRVL 535 (791)
Q Consensus 459 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~--~~~p~~~~~~l~~L~~L 535 (791)
..-.+||++| .+..++ .+..++.|.+|.+++|+|+.+...+. .+++|..|.+.+|++. +++.+ +..|++|++|
T Consensus 43 ~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYL 118 (233)
T ss_pred ccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCcccee
Confidence 4456667776 455544 45666677777777777776644443 3456777777766541 33333 4566666777
Q ss_pred eeeecCccc
Q 038105 536 RMFATGIRS 544 (791)
Q Consensus 536 ~l~~~~~~~ 544 (791)
.+-+|.+..
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 666665443
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.26 E-value=0.001 Score=65.01 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 121 (791)
+...++.|+|++|+|||++|.+++... ......++|++... .+...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC-CCHHHHHH
Confidence 356899999999999999999998776 23356899999875 45444443
No 225
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.0051 Score=60.90 Aligned_cols=73 Identities=23% Similarity=0.264 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.++|+.|+|||+||.++++.+. .....++++++ .++...+.....- ..... .+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~l 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQEL 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHHh
Confidence 46899999999999999999999883 33344667664 3344444333211 00111 223333
Q ss_pred CCceEEEEEcCcc
Q 038105 151 SKKKFALLLDDLW 163 (791)
Q Consensus 151 ~~~~~LlVlDdv~ 163 (791)
.+.-||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 345689999993
No 226
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.24 E-value=0.00067 Score=74.07 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=57.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
+.-++..++|++|+||||||.-++++. +| .|+=++++...+...+-+.|...+....
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s----------------- 380 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS----------------- 380 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------
Confidence 345899999999999999999999874 33 4778889988888888777766654322
Q ss_pred Hh--CCceEEEEEcCccCc
Q 038105 149 TL--SKKKFALLLDDLWER 165 (791)
Q Consensus 149 ~l--~~~~~LlVlDdv~~~ 165 (791)
.+ .+++..+|+|++|..
T Consensus 381 ~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccccCCCcceEEEecccCC
Confidence 12 368899999999764
No 227
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.24 E-value=0.0025 Score=63.16 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=54.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCC----C---ccccc
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD----S---WKDKR 138 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 138 (791)
+...++.|+|++|+|||++|.+++....... +.-..++|++.....+...+. ++++..+...+ . ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3468999999999999999999987651110 012578999987766654443 33333222110 0 11223
Q ss_pred HHHHHHHHHHHh----CCceEEEEEcCcc
Q 038105 139 LEEKAQDIFKTL----SKKKFALLLDDLW 163 (791)
Q Consensus 139 ~~~~~~~l~~~l----~~~~~LlVlDdv~ 163 (791)
.++....+.+.. ..+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 444444444433 2345688999884
No 228
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.23 E-value=0.00056 Score=66.50 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
.-.++|+|..|+||||++..+.... ...|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 3478899999999999999998887 678877777654
No 229
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.23 E-value=0.0019 Score=63.51 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=37.1
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
|-+.|..+ ....++.|+|.+|+||||+|.+++... ...-..++|++.....
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDTEGLS 59 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEECCCCC
Confidence 44444433 356899999999999999999998876 2334578888865543
No 230
>PRK04296 thymidine kinase; Provisional
Probab=97.22 E-value=0.00031 Score=67.10 Aligned_cols=113 Identities=16% Similarity=0.052 Sum_probs=64.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS 151 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 151 (791)
.++.++|+.|.||||+|..++.+.. .....++.+... .+.+.....++.+++............+..+.+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k~~--~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFKPA--IDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEecc--ccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 5788999999999999999998872 233445555321 11122233456666643322222334455555554 33
Q ss_pred CceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 152 KKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 152 ~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
++.-+||+|++.-. .+..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l-----~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL-----DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH-----HHcCCeEEEEecCcc
Confidence 45568999999432 1122222221 234788999998743
No 231
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.19 E-value=0.004 Score=72.72 Aligned_cols=48 Identities=21% Similarity=0.392 Sum_probs=38.7
Q ss_pred CCcccchHHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~------~--~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|-+..++.+.+.+.. + ....++.++|+.|+|||++|+.+++.+
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 45678999999998888763 1 123468899999999999999999876
No 232
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.19 E-value=0.0016 Score=59.09 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc---cCHHHHHHHHHHHhCC---C-CCCcccccH-----
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIGKKIGL---Y-TDSWKDKRL----- 139 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~---~-~~~~~~~~~----- 139 (791)
..|-|++..|.||||.|...+-+. .+.-..+.++.+-.. .+-...++.+- .+.. . ...+...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra---~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA---LGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 578899999999999999998876 333445566544332 23333333330 0000 0 000011111
Q ss_pred --HHHHHHHHHHhCC-ceEEEEEcCccCc-----ccccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 140 --EEKAQDIFKTLSK-KKFALLLDDLWER-----VDLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 140 --~~~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
.+..+...+.+.. .-=|+|||++-.. .+.+.+...+.. ...+..||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~---rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA---KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 1223333344444 4469999999432 333444444544 566788999999754
No 233
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0058 Score=58.01 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=86.6
Q ss_pred ccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 51 VVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
+=|.+-...++.+...- -+.++-|.++|++|+|||.||++++++- ...|- .+... +-
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~fi-----rvvgs---ef 225 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAAFI-----RVVGS---EF 225 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chhee-----eeccH---HH
Confidence 44566556666655421 1367889999999999999999999875 33432 22111 11
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcc----------c--cc----ccccCCCCCCCC
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERV----------D--LK----KVGVPLPSRSNS 181 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~--~~----~~~~~l~~~~~~ 181 (791)
++ ..+|. + .-+...+++.. .+.+.++++|+++... + .+ ++...+..++ .
T Consensus 226 vq----kylge-g--------prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd-q 291 (408)
T KOG0727|consen 226 VQ----KYLGE-G--------PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD-Q 291 (408)
T ss_pred HH----HHhcc-C--------cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC-c
Confidence 11 12221 1 12344444444 4578999999997420 1 11 1222222222 2
Q ss_pred CCCcEEEEEc-C----cHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHH
Q 038105 182 PKNSAVVFTT-R----FVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPE 237 (791)
Q Consensus 182 ~~~~~iivTt-R----~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~ 237 (791)
..+.+||..| | ++...+...-++.|++.--+..+-+-.|..........++-+++.
T Consensus 292 ~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~ 352 (408)
T KOG0727|consen 292 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLED 352 (408)
T ss_pred ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHH
Confidence 3456777755 4 223333334456788775555566666666655544434333333
No 234
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.19 E-value=0.0032 Score=57.53 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=71.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEE---------------------eCCc---------------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV---------------------VSKD--------------- 113 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~---------------------~~~~--------------- 113 (791)
....+.|+|++|.||||+.+.++...... .+.+|+. +-++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45789999999999999999998875221 2233332 0011
Q ss_pred ---------cCHHHHHHHHHHHhCCCCC----CcccccHHHHHHHHHHHhCCceEEEEEcCcc----CcccccccccCCC
Q 038105 114 ---------LQLEKIQETIGKKIGLYTD----SWKDKRLEEKAQDIFKTLSKKKFALLLDDLW----ERVDLKKVGVPLP 176 (791)
Q Consensus 114 ---------~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~----~~~~~~~~~~~l~ 176 (791)
...++-..+.++..++... +.+-..-++..-.|.+.+-++|-+++-|+.- ....|+-+ ..+.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im-~lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH-HHHH
Confidence 1122222333333333211 0122233445566777777888999999873 22223322 1121
Q ss_pred CCCCCCCCcEEEEEcCcHHHHhhc
Q 038105 177 SRSNSPKNSAVVFTTRFVDVCGRM 200 (791)
Q Consensus 177 ~~~~~~~~~~iivTtR~~~~~~~~ 200 (791)
.. ...|+.|+++|.+..+...+
T Consensus 182 ei--nr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 182 EI--NRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HH--hhcCcEEEEEeccHHHHHhc
Confidence 10 45689999999999887765
No 235
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.18 E-value=0.0032 Score=74.69 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=46.1
Q ss_pred CCcccchHHHHHHHHHHhccC------C--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE------P--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~------~--~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
...++|.+..++.+.+.+... + ...++.++|+.|+|||++|+.++... .......+.++++.
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l---~~~~~~~i~~d~s~ 633 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL---FDDEDAMVRIDMSE 633 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh---cCCCCcEEEEechh
Confidence 346899999999999988641 1 24578899999999999999999876 22233455566554
No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0025 Score=71.93 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 51 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
++||++|++++++.|..... .--.++|.+|||||+++.-++.+.....- ....++-++ +..-
T Consensus 172 vIGRd~EI~r~iqIL~RR~K-NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD-------------~g~L 237 (786)
T COG0542 172 VIGRDEEIRRTIQILSRRTK-NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD-------------LGSL 237 (786)
T ss_pred CcChHHHHHHHHHHHhccCC-CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-------------HHHH
Confidence 69999999999999997633 33457899999999999999998732211 011111111 1111
Q ss_pred hCCCCCCcccccHHHHHHHHHHHhCC-ceEEEEEcCccCccc--------cc--cc-ccCCCCCCCCCCCcEEEEEcCcH
Q 038105 127 IGLYTDSWKDKRLEEKAQDIFKTLSK-KKFALLLDDLWERVD--------LK--KV-GVPLPSRSNSPKNSAVVFTTRFV 194 (791)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~--------~~--~~-~~~l~~~~~~~~~~~iivTtR~~ 194 (791)
. .+.. ..+..++..+.+.+.++. .+++|++|.++.... .+ .+ ..++.. +.--+|=-||-+.
T Consensus 238 v--AGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR----GeL~~IGATT~~E 310 (786)
T COG0542 238 V--AGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR----GELRCIGATTLDE 310 (786)
T ss_pred h--cccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc----CCeEEEEeccHHH
Confidence 1 1111 345567777777777653 489999999974311 22 12 222322 2222344455433
Q ss_pred HH------HhhccccceEEeccCChHHHHHHHHHHh
Q 038105 195 DV------CGRMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 195 ~~------~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
.- +........+.++.-+.+++.++++...
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 22 1112345679999999999999987665
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0047 Score=69.29 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=102.1
Q ss_pred cccchHH---HHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 50 TVVGLQS---QLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 50 ~~vGR~~---~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
++.|-++ |+.++++.|.+. .-++-|.|+|+.|+|||-||++++... . |=|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---g-----VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---G-----VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---C-----CceeeechH-----
Confidence 4678776 555555556542 235789999999999999999999875 2 234444433
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccccc--------------ccccCCCCCCCCCC
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVDLK--------------KVGVPLPSRSNSPK 183 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~~--------------~~~~~l~~~~~~~~ 183 (791)
+..+.+.... ...+..+.... ...|.++.+|+++...--. .+-+++...+-+..
T Consensus 379 ---EFvE~~~g~~--------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhcccc--------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 2222221110 12334444444 3468999999997431110 11112222111222
Q ss_pred CcEEEE--EcCcHHHH-----hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 184 NSAVVF--TTRFVDVC-----GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 184 ~~~iiv--TtR~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
...||| +|..+++. +-...++.+.++.-+..+..++|.-++...... .+..++++ |+...-|++=|
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHH
Confidence 232333 44433332 222456678888889999999999998765532 33355666 99999998844
No 238
>PHA00729 NTP-binding motif containing protein
Probab=97.16 E-value=0.002 Score=61.92 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.9
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 59 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 59 ~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+++.+.+.+. +...|+|+|.+|+||||||.++++..
T Consensus 6 k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455556555 55689999999999999999999875
No 239
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.15 E-value=0.0019 Score=61.08 Aligned_cols=114 Identities=25% Similarity=0.350 Sum_probs=69.0
Q ss_pred CcccchHHHHHHHHHHh---ccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCL---VQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L---~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
..++|.|...+.+.+-- ..+-...-|.+||--|.|||+|++++.+.+ .+.+-.. |.+...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glrL--VEV~k~------------ 122 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLRL--VEVDKE------------ 122 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCeE--EEEcHH------------
Confidence 45899888888887643 334356789999999999999999999988 3322222 222111
Q ss_pred HhCCCCCCcccccHHHHHHHHHHHh--CCceEEEEEcCcc---CcccccccccCCCCCCCCCCCcEEEEEcC
Q 038105 126 KIGLYTDSWKDKRLEEKAQDIFKTL--SKKKFALLLDDLW---ERVDLKKVGVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~---~~~~~~~~~~~l~~~~~~~~~~~iivTtR 192 (791)
++. ....+.+.+ ...+++|..||.. +...+..+...+.......+...++..|.
T Consensus 123 ------------dl~-~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 123 ------------DLA-TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred ------------HHh-hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 111 112233333 3578999999993 33446666666655433334344444443
No 240
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0021 Score=70.07 Aligned_cols=161 Identities=18% Similarity=0.122 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 147 (791)
....|.|.|+.|+|||+||+++++.+. ++..-.+.+++++.-. .++.+++.+.. .+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-------------------vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-------------------VFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHH-------------------HHH
Confidence 456799999999999999999999983 4555567777776532 23333333222 222
Q ss_pred HHhCCceEEEEEcCccCccc--------cc----ccccCC----CCCCCCCCCcE--EEEEcCcHHHHhh-----ccccc
Q 038105 148 KTLSKKKFALLLDDLWERVD--------LK----KVGVPL----PSRSNSPKNSA--VVFTTRFVDVCGR-----MEDRR 204 (791)
Q Consensus 148 ~~l~~~~~LlVlDdv~~~~~--------~~----~~~~~l----~~~~~~~~~~~--iivTtR~~~~~~~-----~~~~~ 204 (791)
+-+.-.|-++||||++-... +. .+..++ ..+ ...+.+ +|.|......... .-...
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQI 566 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEE
Confidence 33455789999999963211 11 011111 000 123333 4445443322111 12234
Q ss_pred eEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHH
Q 038105 205 MFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITI 256 (791)
Q Consensus 205 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 256 (791)
++.+.++..++-.++++..+..... .......+-+..+|+|. |.-+.++
T Consensus 567 ~~~L~ap~~~~R~~IL~~~~s~~~~---~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 567 VIALPAPAVTRRKEILTTIFSKNLS---DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred EEecCCcchhHHHHHHHHHHHhhhh---hhhhHHHHHHHHhcCCccchhHHHH
Confidence 7889999998888888776644331 11234455588888885 4444333
No 241
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0084 Score=58.53 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=96.1
Q ss_pred cccchHHHHHHHHHHhcc---------C--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ---------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~---------~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
++.|-|...+.|.+...- + ..-+-+.++|++|.|||.||++|+... . .-|++++..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-----STFFSvSSS----- 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-----STFFSVSSS----- 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-----CceEEeehH-----
Confidence 478888888888887531 2 124689999999999999999999875 2 234455443
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCcc---------ccc----ccccCCCCCCCCCCC
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERV---------DLK----KVGVPLPSRSNSPKN 184 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~---------~~~----~~~~~l~~~~~~~~~ 184 (791)
++..... +..+.+++.+++..+ +++-+|++|+++... .-. ++...+........|
T Consensus 201 ---DLvSKWm--------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 201 ---DLVSKWM--------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ---HHHHHHh--------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 2222221 223446666666664 588999999997431 011 111222222223444
Q ss_pred cEEEEEcCcHHHHhhc---cccceEEeccCChHHHH-HHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 185 SAVVFTTRFVDVCGRM---EDRRMFKVACLSDEDAW-ELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 185 ~~iivTtR~~~~~~~~---~~~~~~~l~~l~~~e~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
.-|+=.|-.+-+.+.. .....|- -||.+..|+ .+|.-+++... ..-.++..+++..+..|.-
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCCC
Confidence 4444455544332211 1111122 255555554 45665665432 2223455667777776653
No 242
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.10 E-value=0.00071 Score=67.93 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEE
Q 038105 51 VVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYV 105 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~ 105 (791)
+-+|..+-.-..++|.++ +...|.+.|.+|.|||-||.+.+=.....++.|+.+
T Consensus 226 i~prn~eQ~~ALdlLld~-dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD-DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred cCcccHHHHHHHHHhcCC-CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 345777777777777776 899999999999999988776533222224455533
No 243
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.0016 Score=67.18 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=41.8
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+++|.++.++++++++.. +.+.++++|+|+.|+||||||++++..+
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999865 2346899999999999999999998887
No 244
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0015 Score=63.86 Aligned_cols=127 Identities=16% Similarity=0.105 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC-----ccCHHHHHHHHHHHhCCCCCC-----cccccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-----DLQLEKIQETIGKKIGLYTDS-----WKDKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 139 (791)
+..+++|+|.+|+||||+++.+..-. . .-.+.+++.... .....+-..++++.++...+. .+-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~-pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---E-PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---C-CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45799999999999999999998876 2 233344444222 223345566677777654311 111222
Q ss_pred HHHHHHHHHHhCCceEEEEEcCccCcccc---cccccCCCCCCCCCCCcEEEEEcCcHHHHhhcc
Q 038105 140 EEKAQDIFKTLSKKKFALLLDDLWERVDL---KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRME 201 (791)
Q Consensus 140 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~ 201 (791)
+-..-.|.+.+.-++-++|.|+.-+.-+. ..+...+.+.. ...|...++.|.|-.+.....
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 33344566778889999999999655332 12211121110 234567888888887766553
No 245
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.017 Score=55.20 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=91.7
Q ss_pred cccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++=|-++.++++++++.- + ..++-|..+|++|.|||-+|++.+.+- ...|- .+..
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL-----KLAg----- 238 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL-----KLAG----- 238 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH-----Hhcc-----
Confidence 367889999999998742 1 356789999999999999999987763 23221 0000
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCc----cc------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWER----VD------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----~~------------~~~~~~~l~~~~~ 180 (791)
-++.+.+ .++-..+.+..+... ...+.+|++|+++.. .+ .-++...+..+.
T Consensus 239 ---PQLVQMf--------IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs- 306 (424)
T KOG0652|consen 239 ---PQLVQMF--------IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS- 306 (424)
T ss_pred ---hHHHhhh--------hcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-
Confidence 0111111 111122222333333 356899999999632 00 001122222211
Q ss_pred CCCCcEEEEEc-C----cHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHH
Q 038105 181 SPKNSAVVFTT-R----FVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQ 240 (791)
Q Consensus 181 ~~~~~~iivTt-R----~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (791)
.....+||-.| | ++...+...-++.|++.--+++.-..+++-+.......++-.++++++
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 23345666655 4 334444445566788766666666666666666555555555555543
No 246
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.09 E-value=0.0024 Score=70.14 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=45.2
Q ss_pred CCcccchHHHHHHHHHHhccC----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEE
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE----PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 109 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~----~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 109 (791)
..+++--.+.++++.+||... ...+++.++||+|+||||.++.+++.+ .|+.+=|.+
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 345677778899999999752 245799999999999999999999886 466666764
No 247
>PRK06526 transposase; Provisional
Probab=97.08 E-value=0.00051 Score=68.45 Aligned_cols=25 Identities=24% Similarity=0.281 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.+.|+|++|+|||+||.+++...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4679999999999999999998876
No 248
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.07 E-value=0.0018 Score=66.35 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=58.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---cccccHHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDKRLEEKAQD 145 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 145 (791)
+..+++.|+|++|+||||||.+++... ......++|++.....+.. .++.++...+. .+....++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 456899999999999999999987776 2334567899887655542 45556543221 122344555555
Q ss_pred HHHHhC-CceEEEEEcCcc
Q 038105 146 IFKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 146 l~~~l~-~~~~LlVlDdv~ 163 (791)
+....+ +..-++|+|.+.
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555554 456799999994
No 249
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.07 E-value=0.0034 Score=62.57 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=54.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC-------cccc-
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS-------WKDK- 137 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~- 137 (791)
+...++.|+|++|+|||++|.+++....... +....++|++....+..+.+.+ +++..+...+. ....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 3568999999999999999999975531111 1136799999887666544433 33333321110 0111
Q ss_pred --cHHHHHHHHHHHhC-C-ceEEEEEcCcc
Q 038105 138 --RLEEKAQDIFKTLS-K-KKFALLLDDLW 163 (791)
Q Consensus 138 --~~~~~~~~l~~~l~-~-~~~LlVlDdv~ 163 (791)
...+....+.+.+. . +.-++|+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 12223344444443 2 56688888883
No 250
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0042 Score=73.36 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=43.8
Q ss_pred CCcccchHHHHHHHHHHhcc------C-C-CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ------E-P-AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~------~-~-~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
...++|.+..++.+...+.. + + ...++.++|+.|+|||++|+.+++... ......+.++++
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~---~~~~~~i~id~s 635 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMS 635 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh---cCCCcEEEEEhH
Confidence 34588999999998888763 1 1 125788999999999999999998762 222334555554
No 251
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.06 E-value=0.0046 Score=69.00 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
.+++|.+..++.+...+... ....|.|+|+.|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~-~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP-NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999887654 4566789999999999999999764
No 252
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.06 E-value=0.0019 Score=76.05 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~------~--~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|-+..++.+.+.+.. + ....++.++|+.|+|||.+|+++++.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998753 1 133578999999999999999999887
No 253
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.05 E-value=0.0081 Score=68.79 Aligned_cols=172 Identities=15% Similarity=0.101 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 50 TVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~---~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
++.|.+...+++.+.+. .. .-.+-|.|+|++|+|||++|+.++... ...| +.++.+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 46677766665555432 21 123459999999999999999999876 2232 2222211
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----------------ccccccCCCCCCCCC
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----------------LKKVGVPLPSRSNSP 182 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~~~ 182 (791)
+.. ... ..........+.......+.+|+||++|.... +..+...+.... ..
T Consensus 221 ~~~----~~~-------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-~~ 288 (644)
T PRK10733 221 FVE----MFV-------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-GN 288 (644)
T ss_pred hHH----hhh-------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc-CC
Confidence 111 100 01112222223333345689999999975311 011111111110 22
Q ss_pred CCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 183 KNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 183 ~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
.+..||.||..++..+. ...++.+.+..-+.++-.+++..+.......... ....+++.+.|.
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~----d~~~la~~t~G~ 356 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGF 356 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC----CHHHHHhhCCCC
Confidence 34455557765543221 2345678888888888999998887654322221 133466666663
No 254
>PRK09354 recA recombinase A; Provisional
Probab=97.04 E-value=0.002 Score=66.46 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=59.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---cccccHHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDKRLEEKAQD 145 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 145 (791)
+..+++-|+|+.|+||||||.+++... ......++|++.....+. ..++.++...+. .+....++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 456899999999999999999998775 234467899998877664 345666553221 122334555555
Q ss_pred HHHHhC-CceEEEEEcCcc
Q 038105 146 IFKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 146 l~~~l~-~~~~LlVlDdv~ 163 (791)
+....+ ...-++|+|.+.
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 555554 356799999984
No 255
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0098 Score=63.94 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=84.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
.+.-|.+||++|+|||-||++|++.- +.+| +++... +++... .+..+-.++.++++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP--------ELlNkY--------VGESErAVR~vFqR 599 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP--------ELLNKY--------VGESERAVRQVFQR 599 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH--------HHHHHH--------hhhHHHHHHHHHHH
Confidence 45679999999999999999999986 4444 333222 122211 11122234444444
Q ss_pred h-CCceEEEEEcCccCccc-------------ccccccCCCCCCCCCCCcEEEEEcCcHHH-----HhhccccceEEecc
Q 038105 150 L-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPKNSAVVFTTRFVDV-----CGRMEDRRMFKVAC 210 (791)
Q Consensus 150 l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~~~~iivTtR~~~~-----~~~~~~~~~~~l~~ 210 (791)
. ..-++.|+||++|...- +..+..-+... ....|.-||-.|--+++ .+-...+...-++.
T Consensus 600 AR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl-~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 600 ARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL-EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred hhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc-ccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 4 45799999999975310 11111112211 12334445544432333 22233455667777
Q ss_pred CChHHHHHHHHHHhC--ccccCCCCChHHHHHHHHHHcCCCc
Q 038105 211 LSDEDAWELFREKVG--EETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 211 l~~~e~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
-+.+|-.++++.... ......+-++++++. ..+|.|.-
T Consensus 679 Pn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~--~~~c~gft 718 (802)
T KOG0733|consen 679 PNAEERVAILKTITKNTKPPLSSDVDLDEIAR--NTKCEGFT 718 (802)
T ss_pred CCHHHHHHHHHHHhccCCCCCCcccCHHHHhh--cccccCCc
Confidence 788899999988887 333334444454443 23455654
No 256
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=7.6e-05 Score=71.61 Aligned_cols=99 Identities=27% Similarity=0.281 Sum_probs=54.0
Q ss_pred CCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchh--hhcCCCCceee
Q 038105 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEE--LKALVNLKCLN 511 (791)
Q Consensus 434 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~--~~~l~~L~~L~ 511 (791)
.+++.|++.||.++++.- ...|+.|++|.|+-| .+..+. .+..|++|+.|.|+.|.|..+.+- +.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344555555555544432 455666666666666 344432 355566666666666666555332 55666666666
Q ss_pred ccCcccccccch----hHhhcCcCCCeee
Q 038105 512 LDWTDVLVEVPQ----QLLSNFSRLRVLR 536 (791)
Q Consensus 512 l~~~~~~~~~p~----~~~~~l~~L~~L~ 536 (791)
|..|.-.++-+. .++.-+++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 666654444332 2244566666654
No 257
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.02 E-value=0.0021 Score=65.78 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---cccccHHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDKRLEEKAQD 145 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~ 145 (791)
+..+++-|+|++|+||||||.+++... ......++|++.....+. ..++.++...+. .+..+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDAEHALDP-----VYAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECccccHHH-----HHHHHcCCCHHHheecCCCCHHHHHHH
Confidence 456899999999999999999988765 233456889998776554 244555543211 122344555555
Q ss_pred HHHHhC-CceEEEEEcCcc
Q 038105 146 IFKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 146 l~~~l~-~~~~LlVlDdv~ 163 (791)
+....+ ...-++|+|.+.
T Consensus 125 ~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHhccCCCEEEEcchH
Confidence 555554 356799999984
No 258
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=0.0002 Score=80.33 Aligned_cols=109 Identities=24% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCccEEEecCCC-Cccc-chhhhccCCcccEEeecCc-ccccccc----ccccCcccccEEecCCCc-cccc--chhhh
Q 038105 433 CPHLLTLFLNDNE-LTTI-TDDFFQSMPCLTVLKMSDI-RMLQQLP----MGISKLVSLQLLDISNTE-VEEL--PEELK 502 (791)
Q Consensus 433 l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~lp----~~~~~l~~L~~L~L~~~~-l~~l--p~~~~ 502 (791)
++.|+.|.+.++. +... .......+++|+.|+++++ ......+ .....+.+|+.|+++++. ++.. ..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555556555554 2221 1223456666777776652 1111111 123345666666666664 3321 11122
Q ss_pred cCCCCceeeccCccc-ccccchhHhhcCcCCCeeeeeecC
Q 038105 503 ALVNLKCLNLDWTDV-LVEVPQQLLSNFSRLRVLRMFATG 541 (791)
Q Consensus 503 ~l~~L~~L~l~~~~~-~~~~p~~~~~~l~~L~~L~l~~~~ 541 (791)
.+++|+.|.+.+|.. ...--..+..++++|++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 356666666666652 222222223556667777776665
No 259
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.99 E-value=0.0022 Score=61.00 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEE
Q 038105 53 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 109 (791)
Q Consensus 53 GR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 109 (791)
.+..+-....+.|.+. .+|.+.|++|.|||.||.+.+-+... .+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~~~---~~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN---DLVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHHH----SEEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEEe
Confidence 3445556666666643 79999999999999999998876533 37888887765
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.00063 Score=68.31 Aligned_cols=25 Identities=36% Similarity=0.402 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+.|+|+.|+|||+||..++...
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999998775
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.0006 Score=61.66 Aligned_cols=75 Identities=27% Similarity=0.252 Sum_probs=44.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCc
Q 038105 74 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKK 153 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 153 (791)
|.|+|+.|+|||+||+.+++.+ . ....-+.+....+..++....--. .....+......... .+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~--------~~ 65 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAM--------RK 65 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTH--------HE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEeccccccccceeeeeec--ccccccccccccccc--------cc
Confidence 7899999999999999999987 1 234456676666666554332211 001111111111111 17
Q ss_pred eEEEEEcCccC
Q 038105 154 KFALLLDDLWE 164 (791)
Q Consensus 154 ~~LlVlDdv~~ 164 (791)
+.++|||+++.
T Consensus 66 ~~il~lDEin~ 76 (139)
T PF07728_consen 66 GGILVLDEINR 76 (139)
T ss_dssp EEEEEESSCGG
T ss_pred eeEEEECCccc
Confidence 89999999973
No 262
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.95 E-value=0.0038 Score=62.15 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
|-+.|..+ +...++.|.|++|+|||++|.+++... ......++|++... +.+++.+.+
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 44445443 456899999999999999999987664 13356788988765 445555553
No 263
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.95 E-value=0.0035 Score=66.11 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
...++.|.|.+|+|||||+.+++.... .....++|++.... ..++. .-+++++...+.. ...+.++..+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 457999999999999999999998872 33357889887543 33332 2345565543322 122334433333
Q ss_pred HHHhCCceEEEEEcCcc
Q 038105 147 FKTLSKKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~~~~~LlVlDdv~ 163 (791)
. ..++-++|+|.+.
T Consensus 155 ~---~~~~~lVVIDSIq 168 (372)
T cd01121 155 E---ELKPDLVIIDSIQ 168 (372)
T ss_pred H---hcCCcEEEEcchH
Confidence 2 2366789999983
No 264
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.94 E-value=0.0051 Score=63.36 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=46.9
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcc--cCC-CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF--VDN-PTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 130 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~--~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 130 (791)
|-+.|..+ +...++-|+|++|+|||++|.+++-.. ... ...-..++|++....++.+.+.+ +++.++..
T Consensus 85 LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d 157 (313)
T TIGR02238 85 LDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVD 157 (313)
T ss_pred HHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 33444433 356899999999999999999876432 100 12234799999998888877754 56666654
No 265
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0014 Score=73.95 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=69.1
Q ss_pred CCcccchHHHHHHHHHHhcc------C--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ------E--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~------~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
...++|-+..++.+.+.+.. + ....+....||.|||||.||++++..+ .+.-+..+-++.|....-
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek--- 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK--- 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH---
Confidence 45689999999999999864 1 234677789999999999999999988 333355566665543222
Q ss_pred HHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceE-EEEEcCccCc
Q 038105 120 QETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKF-ALLLDDLWER 165 (791)
Q Consensus 120 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 165 (791)
..+.+-+|.+..- .+..+ -..+-+..+.+|| ++.||+++..
T Consensus 564 -HsVSrLIGaPPGY--VGyee--GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 564 -HSVSRLIGAPPGY--VGYEE--GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred -HHHHHHhCCCCCC--ceecc--ccchhHhhhcCCCeEEEechhhhc
Confidence 2333333332211 11111 3345556677776 8889999743
No 266
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.92 E-value=0.0046 Score=61.51 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=61.4
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC------
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS------ 133 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------ 133 (791)
+-+.|..+ +...++.|+|++|+|||++|.+++... ...-..++|++.... .+++.+++ +.++....+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~ 87 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGY 87 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCC
Confidence 34444433 456899999999999999999997664 234568899998654 45555553 334432111
Q ss_pred ------------cccccHHHHHHHHHHHhCC-ceEEEEEcCcc
Q 038105 134 ------------WKDKRLEEKAQDIFKTLSK-KKFALLLDDLW 163 (791)
Q Consensus 134 ------------~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 163 (791)
......++....+.+.... ++-++|+|.+.
T Consensus 88 l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 88 LRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55689999985
No 267
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.041 Score=56.18 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=94.3
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhccc-------CCCCCCCEEEEEEe-CCccCHHHHHHHHHHHhCC
Q 038105 58 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFV-------DNPTDFDYVIWVVV-SKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 58 ~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~-------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 129 (791)
++.+...+..+.-.++..++|..|.||+++|+.++..+- ....+-+.+.+++. +.....+++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 445566666553456777999999999999999987751 00111112333331 1112222222 22222211
Q ss_pred CCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCc-HHHHhh-ccccce
Q 038105 130 YTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRF-VDVCGR-MEDRRM 205 (791)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~-~~~~~~-~~~~~~ 205 (791)
.+ .-++.+=++|+|+++.+.. ...+...+.. .+.++.+|++|.+ ..+... .+....
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 10 0014667888999976643 3345555555 5556777765543 333322 345678
Q ss_pred EEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 206 FKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 206 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
+++.++++++..+.+... + . + ++.+..++...+|.=.|+..
T Consensus 144 ~~f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 999999999999888764 2 1 1 34566667677763344444
No 268
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.0054 Score=60.56 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=52.4
Q ss_pred HHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcc
Q 038105 57 QLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWK 135 (791)
Q Consensus 57 ~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 135 (791)
.+..+.+...+. .....+.++|.+|+|||+||.++++.+. .....+++++ ..++...+...... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it------~~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIIT------VADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEE------HHHHHHHHHHHHhh-----c
Confidence 444455444432 2245799999999999999999999873 2334566765 34455444433311 1
Q ss_pred cccHHHHHHHHHHHhCCceEEEEEcCccC
Q 038105 136 DKRLEEKAQDIFKTLSKKKFALLLDDLWE 164 (791)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 164 (791)
.... ..+.+.+. +.=+|||||+..
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCC
Confidence 1111 22334444 345888899954
No 269
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0089 Score=65.51 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=88.0
Q ss_pred CcccchHHHHHHHHHHhc-----cCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLV-----QEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~-----~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
.+-+|.++-.+++.+.+. ..-+.++++++||+|||||++|+.++..+ ...|. -++++.-.+..++---
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeIkGH- 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEIKGH- 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhhccc-
Confidence 345999999999999874 23456899999999999999999999987 23331 2344443333333111
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHh---CCceEEEEEcCccCc------------------cccccc-ccCCCCCCCC
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTL---SKKKFALLLDDLWER------------------VDLKKV-GVPLPSRSNS 181 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~------------------~~~~~~-~~~l~~~~~~ 181 (791)
.......+..++.+-| +...=|+.||+||.. .+-..+ .+++.- .
T Consensus 484 -----------RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdV---p 549 (906)
T KOG2004|consen 484 -----------RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDV---P 549 (906)
T ss_pred -----------ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccc---c
Confidence 1111222223333333 334457888999742 000011 111111 1
Q ss_pred CCCcEEEEEcCcHHH----HhhccccceEEeccCChHHHHHHHHHHhC
Q 038105 182 PKNSAVVFTTRFVDV----CGRMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 182 ~~~~~iivTtR~~~~----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
-.=|+|++...-..+ ....+.-.+|++.+...+|-.++-.+++-
T Consensus 550 ~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 550 VDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred cchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhh
Confidence 123555542221111 11123345799999999998888887763
No 270
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.89 E-value=0.0007 Score=59.48 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|+|.|++|+||||+|+++++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 271
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.88 E-value=0.0045 Score=62.00 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=45.9
Q ss_pred HHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcc--cC-CCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 60 QVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF--VD-NPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 60 ~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~--~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
.|-++|..+ ....+.=|+|++|+|||.||.+++-.. .. ..+.-..++|++-...+..+.+. +|+++.+.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 344445432 245799999999999999999886542 11 12234579999998888877765 46666543
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.85 E-value=0.0081 Score=64.58 Aligned_cols=89 Identities=21% Similarity=0.170 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCc-ccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSW-KDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 147 (791)
.+.+|.++|+.|+||||+|..++..+. .....+..+++... ....+.+..++++++.+.... ...+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~---~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK---KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998873 22234555665442 233455566677766542111 1123333334444
Q ss_pred HHhCCceEEEEEcCc
Q 038105 148 KTLSKKKFALLLDDL 162 (791)
Q Consensus 148 ~~l~~~~~LlVlDdv 162 (791)
+.+.+. -++|+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 444443 56777777
No 273
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.015 Score=63.71 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
..-|.++|++|+|||-||-+++... . .-|+++... +++.+. .+..++.++.++++.
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~-----~---~~fisvKGP--------ElL~Ky--------IGaSEq~vR~lF~rA 756 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNS-----N---LRFISVKGP--------ELLSKY--------IGASEQNVRDLFERA 756 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhC-----C---eeEEEecCH--------HHHHHH--------hcccHHHHHHHHHHh
Confidence 4569999999999999999998775 1 234555433 222221 112234455555555
Q ss_pred -CCceEEEEEcCccCcc-----c--------ccccccCCCCCCCCCCCcEEEE-EcCc----HHHHhhccccceEEeccC
Q 038105 151 -SKKKFALLLDDLWERV-----D--------LKKVGVPLPSRSNSPKNSAVVF-TTRF----VDVCGRMEDRRMFKVACL 211 (791)
Q Consensus 151 -~~~~~LlVlDdv~~~~-----~--------~~~~~~~l~~~~~~~~~~~iiv-TtR~----~~~~~~~~~~~~~~l~~l 211 (791)
.-+|++++||++++.. + ...+...+.... +-.|.-|+- |||. +...+..+-++.+.-+.-
T Consensus 757 ~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E-gl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P 835 (952)
T KOG0735|consen 757 QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE-GLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLP 835 (952)
T ss_pred hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc-ccceEEEEEecCCccccCHhhcCCCccceeeeCCCC
Confidence 4599999999997530 0 122222222211 223444443 6662 222222233344444555
Q ss_pred ChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 212 SDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 212 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
++.|-.+++........... ....+.++.+.+|.--
T Consensus 836 ~~~eRl~il~~ls~s~~~~~----~vdl~~~a~~T~g~tg 871 (952)
T KOG0735|consen 836 DEPERLEILQVLSNSLLKDT----DVDLECLAQKTDGFTG 871 (952)
T ss_pred CcHHHHHHHHHHhhccCCcc----ccchHHHhhhcCCCch
Confidence 66777888877765433222 3346677788888753
No 274
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.84 E-value=0.0095 Score=68.80 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHHhcc--------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ--------EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~--------~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|-+..++.+.+.+.. +.....+.++|+.|+|||++|+.++..+
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 44589999999999998863 1124578999999999999999999887
No 275
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0056 Score=61.17 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCC
Q 038105 53 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD 132 (791)
Q Consensus 53 GR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 132 (791)
++.+.+.++.+....=++..-+.++|++|+|||.||.++++++. ...-.+.|++ ..++..++......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~------~~el~~~Lk~~~~~--- 154 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFIT------APDLLSKLKAAFDE--- 154 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhc---
Confidence 44454444444332212567899999999999999999999983 3334566665 34455555544431
Q ss_pred CcccccHHHHHHHHHHHhCCceEEEEEcCcc
Q 038105 133 SWKDKRLEEKAQDIFKTLSKKKFALLLDDLW 163 (791)
Q Consensus 133 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 163 (791)
.. ....+.+.+. +-=||||||+-
T Consensus 155 ----~~---~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 155 ----GR---LEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred ----Cc---hHHHHHHHhh-cCCEEEEeccc
Confidence 11 1122222222 23488999994
No 276
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.0007 Score=65.09 Aligned_cols=86 Identities=27% Similarity=0.337 Sum_probs=38.2
Q ss_pred ccCCcccEEeecCc--cccccccccccCcccccEEecCCCccccc--chhhhcCCCCceeeccCccccc--ccchhHhhc
Q 038105 455 QSMPCLTVLKMSDI--RMLQQLPMGISKLVSLQLLDISNTEVEEL--PEELKALVNLKCLNLDWTDVLV--EVPQQLLSN 528 (791)
Q Consensus 455 ~~l~~L~~L~l~~~--~~~~~lp~~~~~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~~ 528 (791)
..+++|++|.++.| +....++-....+++|++|++++|+|+.+ -..+..+.+|..|++.+|.... .--..++.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34445555555544 22233333333345555555555544421 1123455555555555554321 111223445
Q ss_pred CcCCCeeeeeec
Q 038105 529 FSRLRVLRMFAT 540 (791)
Q Consensus 529 l~~L~~L~l~~~ 540 (791)
+++|.+|+-...
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 555655555443
No 277
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.82 E-value=0.0063 Score=72.04 Aligned_cols=107 Identities=20% Similarity=0.264 Sum_probs=61.9
Q ss_pred CCcccchHHHHHHHHHHhcc------CC--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ------EP--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~------~~--~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
...++|-+..++.+.+.+.. ++ ...++.++|+.|+|||+||+.+++.+ .+.....+-++.+.......
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~- 583 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHT- 583 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhcccccc-
Confidence 45689999999999988753 11 23467899999999999999999876 22223344555443222111
Q ss_pred HHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCce-EEEEEcCccCc
Q 038105 120 QETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKK-FALLLDDLWER 165 (791)
Q Consensus 120 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~~ 165 (791)
+...++.+..-..... ...+.+.++.++ -+++||+++..
T Consensus 584 ---~~~l~g~~~gyvg~~~----~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 ---VSKLIGSPPGYVGYNE----GGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ---HHHhcCCCCcccCcCc----cchHHHHHHhCCCeEEEECChhhC
Confidence 1111221111000001 112344444444 58999999754
No 278
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0084 Score=57.39 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=58.3
Q ss_pred cccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++=|=.++++++.+.... + +.++-|.++|+.|.|||-+|++|+++- ..+ |+.+
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dac-----firv------- 242 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DAC-----FIRV------- 242 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cce-----EEee-------
Confidence 355677888888876542 1 356789999999999999999999875 333 3332
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCC-ceEEEEEcCccC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSK-KKFALLLDDLWE 164 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 164 (791)
+-.++.+..- +.-.-+..++++..+. +-++++||+++.
T Consensus 243 -igselvqkyv--------gegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 243 -IGSELVQKYV--------GEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -hhHHHHHHHh--------hhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 1122222211 1112355566666665 458999999963
No 279
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.015 Score=60.42 Aligned_cols=65 Identities=17% Similarity=0.189 Sum_probs=38.4
Q ss_pred EEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHH-HHhh-ccccceEEeccCChHHHHHHHHHH
Q 038105 156 ALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCGR-MEDRRMFKVACLSDEDAWELFREK 223 (791)
Q Consensus 156 LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~ 223 (791)
++|+|+++..+ ....+...+.. ...+..+|++|.+.. +... .+....+.+.+++.+++.+.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEe---p~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEE---PPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHh---CcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 44568886542 22233333333 223566777777654 2222 233457899999999999988654
No 280
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.81 E-value=0.0053 Score=63.10 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 53 GLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 53 GR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
+|....+...+++.. +...+.+.|+|+.|+|||.||.++++.+. .....+.|+.+ ..++..+.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~---~~g~~v~~~~~------~~l~~~lk~~~~- 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA---KKGVSSTLLHF------PEFIRELKNSIS- 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEEH------HHHHHHHHHHHh-
Confidence 455555555555543 12356899999999999999999999983 22233556554 344455544432
Q ss_pred CCCCcccccHHHHHHHHHHHhCCceEEEEEcCcc
Q 038105 130 YTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLW 163 (791)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 163 (791)
.....+ ..+.+. +.=||||||+.
T Consensus 205 ------~~~~~~----~l~~l~-~~dlLiIDDiG 227 (306)
T PRK08939 205 ------DGSVKE----KIDAVK-EAPVLMLDDIG 227 (306)
T ss_pred ------cCcHHH----HHHHhc-CCCEEEEecCC
Confidence 111222 222233 34689999994
No 281
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=0.00046 Score=77.40 Aligned_cols=116 Identities=20% Similarity=0.159 Sum_probs=81.2
Q ss_pred hccCCcccEEeecCcccccc--ccccccCcccccEEecCCC--ccccc----chhhhcCCCCceeeccCcccccccc-hh
Q 038105 454 FQSMPCLTVLKMSDIRMLQQ--LPMGISKLVSLQLLDISNT--EVEEL----PEELKALVNLKCLNLDWTDVLVEVP-QQ 524 (791)
Q Consensus 454 ~~~l~~L~~L~l~~~~~~~~--lp~~~~~l~~L~~L~L~~~--~l~~l----p~~~~~l~~L~~L~l~~~~~~~~~p-~~ 524 (791)
...++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+... ......+++|+.|+++++...+... ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 44589999999999866665 3345678899999999873 22211 2235567899999999997434433 22
Q ss_pred HhhcCcCCCeeeeeecC-ccccccccccchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 525 LLSNFSRLRVLRMFATG-IRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 525 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
+...|++|++|.+.+|. ++. ..+......+++|+.|+++++....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~---------~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTD---------EGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHhhCCCcceEccCCCCccch---------hHHHHHHHhcCcccEEeeecCccch
Confidence 22348999999987776 333 2355566778889999999876643
No 282
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.77 E-value=0.0045 Score=58.63 Aligned_cols=127 Identities=15% Similarity=0.179 Sum_probs=66.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC--c----------ccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS--W----------KDK 137 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~----------~~~ 137 (791)
...+++|.|+.|.|||||++.++..... ..+.++++.. .+......+.+.++.-.+. . ..-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 4478999999999999999999887522 2233343321 1111111222222211100 0 001
Q ss_pred c-HHHHHHHHHHHhCCceEEEEEcCccCcccc---cccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEe
Q 038105 138 R-LEEKAQDIFKTLSKKKFALLLDDLWERVDL---KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKV 208 (791)
Q Consensus 138 ~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 208 (791)
+ -+...-.+.+.+..++=++++|+..+.-+. +.+...+.. ...+..||++|.+...... .++++.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~---~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE---VLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH---HcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1 122233345555677888999999654332 222223322 1125678888888776542 3445544
No 283
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.77 E-value=0.0015 Score=62.95 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHH---HHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE---TIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
..+.|.|+.|+||||+++.++..+ .......++.-.. ... .... .+..+-.. ..+.....+.+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~-~~E--~~~~~~~~~i~q~~v------g~~~~~~~~~i~~ 69 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIED-PIE--FVHESKRSLINQREV------GLDTLSFENALKA 69 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcC-Ccc--ccccCccceeeeccc------CCCccCHHHHHHH
Confidence 579999999999999999988776 2222333332211 111 0000 00000000 1112234556777
Q ss_pred HhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 149 TLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 149 ~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
.++..+=++++|++.+.......... ...|..++.|+.....
T Consensus 70 aLr~~pd~ii~gEird~e~~~~~l~~------a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 70 ALRQDPDVILVGEMRDLETIRLALTA------AETGHLVMSTLHTNSA 111 (198)
T ss_pred HhcCCcCEEEEcCCCCHHHHHHHHHH------HHcCCEEEEEecCCcH
Confidence 77778889999999665444433222 2234557777765443
No 284
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.75 E-value=0.015 Score=59.44 Aligned_cols=136 Identities=14% Similarity=0.124 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhcCCccccccCCCCcccccccccCCCcccchHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHH
Q 038105 11 KVAKRLRDVKALKGEGVFEEVAAPDPELISWADERHTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLL 88 (791)
Q Consensus 11 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa 88 (791)
.+...+.+++...+++..-........ ...+..| .. ...|-.+|-.+ +..+++-|+|+.|+||||||
T Consensus 2 ~l~~~~~~i~k~~g~~~i~~lg~~~~~--~~~~~i~--TG-------~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLa 70 (322)
T PF00154_consen 2 ALEKALKQIEKKFGKGSIMRLGDNAES--QNIEVIS--TG-------SPALDYALGIGGLPRGRIVEIYGPESSGKTTLA 70 (322)
T ss_dssp HHHHHHHHHHHHHTTTSSEETTS-C-G--CSS-EE----S--------HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHHHHhCCCceeecCCcccc--cccceEe--cC-------CcccchhhccCccccCceEEEeCCCCCchhhhH
Confidence 466777788887777633222222111 1111111 11 12233344322 35679999999999999999
Q ss_pred HHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHHHHHhCC-ceEEEEEcCccC
Q 038105 89 TQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDIFKTLSK-KKFALLLDDLWE 164 (791)
Q Consensus 89 ~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 164 (791)
..+.... ......++|++.....+. ..++.+++..+.. ++...++....+.+.++. .--++|+|-|..
T Consensus 71 L~~ia~~---q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 71 LHAIAEA---QKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHHH---HHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT
T ss_pred HHHHHhh---hcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcc
Confidence 9998776 233567899998776543 4456666654321 233445555555555544 345889999855
Q ss_pred c
Q 038105 165 R 165 (791)
Q Consensus 165 ~ 165 (791)
.
T Consensus 143 l 143 (322)
T PF00154_consen 143 L 143 (322)
T ss_dssp -
T ss_pred c
Confidence 4
No 285
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.74 E-value=0.0049 Score=56.66 Aligned_cols=117 Identities=21% Similarity=0.137 Sum_probs=64.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEE---EEEeCCccCHHHHHHHHHHHhCC--CCC--Cccc-------
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVI---WVVVSKDLQLEKIQETIGKKIGL--YTD--SWKD------- 136 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~~--~~~--~~~~------- 136 (791)
...|.|++..|.||||.|..++-+. ...-..++ |+......+-...++.+ .+.. ... .+..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra---~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA---LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 4688899999999999999998876 23333343 44433222333333332 1110 000 0111
Q ss_pred ccHHHHHHHHHHHhCCc-eEEEEEcCccC-----cccccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 137 KRLEEKAQDIFKTLSKK-KFALLLDDLWE-----RVDLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 137 ~~~~~~~~~l~~~l~~~-~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
....+..+...+.+... -=++|||++-. .-+.+.+...+.. .+.+..||+|-|+..
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCC
Confidence 11222334444444444 45999999943 2334444444544 566789999999753
No 286
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.74 E-value=0.0067 Score=58.32 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe----------------------CCcc-------------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV----------------------SKDL------------- 114 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~----------------------~~~~------------- 114 (791)
+...|+|+|++|+|||||...+..-... -.+.+++.. .+.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 4479999999999999999998654311 122222221 0000
Q ss_pred -----------CHHHHHHHHHHHhCCCCC-----CcccccHHHHHHHHHHHhCCceEEEEEcCccCccc---ccccccCC
Q 038105 115 -----------QLEKIQETIGKKIGLYTD-----SWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD---LKKVGVPL 175 (791)
Q Consensus 115 -----------~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l 175 (791)
........+++.+++... ..+-..-++.+-.+.+.+-..|-+|+-|+.-..-| -+.+...+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 123344555666565421 11223345556677788888899999999842211 11222222
Q ss_pred CCCCCCCCCcEEEEEcCcHHHHhhccccceEEec
Q 038105 176 PSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKVA 209 (791)
Q Consensus 176 ~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~ 209 (791)
... +...|..||+.|.++.++... +++|.+.
T Consensus 186 ~~~-~~~~g~tii~VTHd~~lA~~~--dr~i~l~ 216 (226)
T COG1136 186 REL-NKERGKTIIMVTHDPELAKYA--DRVIELK 216 (226)
T ss_pred HHH-HHhcCCEEEEEcCCHHHHHhC--CEEEEEe
Confidence 210 024477899999999998754 3445443
No 287
>PRK06696 uridine kinase; Validated
Probab=96.74 E-value=0.0021 Score=63.26 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHhcc--CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 53 GLQSQLEQVWRCLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 53 GR~~~~~~l~~~L~~--~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|++.+++|.+.+.. .++..+|+|.|.+|+||||+|+++++.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 477888888888864 3467899999999999999999999987
No 288
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.74 E-value=0.0099 Score=61.75 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=43.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc--cCC-CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKF--VDN-PTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 130 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~--~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 130 (791)
+...++-|+|++|+|||+|+.+++-.. ... .+.-..++|++....+..+.+.+ +++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 356788999999999999999986432 111 12234799999999888877654 56666654
No 289
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.0077 Score=56.02 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
++.|+|++|+||||++.+++... ......++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcch
Confidence 46899999999999999998887 2344578888876554
No 290
>PRK10867 signal recognition particle protein; Provisional
Probab=96.73 E-value=0.009 Score=64.09 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
.+.+|.++|++|+||||+|..++..+.. .....+..+++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~--~~G~kV~lV~~D~ 139 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK--KKKKKVLLVAADV 139 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--hcCCcEEEEEccc
Confidence 4689999999999999999999887621 1123455566543
No 291
>PTZ00494 tuzin-like protein; Provisional
Probab=96.70 E-value=0.21 Score=52.39 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=95.9
Q ss_pred cCCCcccchHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 46 HTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 46 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
+.+..+|.|++|-..+.+.|..- ..++++++.|.-|+||++|++.....- --..++|++.... +-+..+
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE------~~paV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE------GVALVHVDVGGTE---DTLRSV 438 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc------CCCeEEEEecCCc---chHHHH
Confidence 34677999999998888888752 368999999999999999999987653 1346788887654 345666
Q ss_pred HHHhCCCCCCcccccHHHHHHHH----HHHhCCceEEEEE--cCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHH
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDI----FKTLSKKKFALLL--DDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC 197 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l----~~~l~~~~~LlVl--Ddv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~ 197 (791)
.+.++.+.-+ .-++.-+-+.+- .....++.=+||+ -+-.+..-...-...+.. ...-++|++----+...
T Consensus 439 VKALgV~nve-~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLac---DrRlCHvv~EVplESLT 514 (664)
T PTZ00494 439 VRALGVSNVE-VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVS---DCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHhCCCChh-hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHc---cchhheeeeechHhhhc
Confidence 7777765322 122222222221 1222344334443 222221111111111222 23345565533322111
Q ss_pred ---hhccccceEEeccCChHHHHHHHHHHhC
Q 038105 198 ---GRMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 198 ---~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
........|-+.+|+.++|.++..+...
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~lD 545 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTLD 545 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcccc
Confidence 1112334688999999999999887763
No 292
>PRK04328 hypothetical protein; Provisional
Probab=96.70 E-value=0.0056 Score=61.27 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=36.3
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
|-+.|..+ +...++.|.|++|+|||++|.+++... ....+.++|++....
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~ 62 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEH 62 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCC
Confidence 33444443 356899999999999999999987664 233467889887664
No 293
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.70 E-value=0.0019 Score=59.95 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=45.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccH-HHHHHHHHHHhCC
Q 038105 74 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRL-EEKAQDIFKTLSK 152 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~ 152 (791)
+.|.|..|+|||++|.+++... ...++|+.-....+. +..+.|.+.-......+..... .++.+.+ ....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l-~~~~- 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSAL-KELD- 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHH-HhcC-
Confidence 6799999999999999997652 235667665555443 3444444433222322222221 2223323 2222
Q ss_pred ceEEEEEcCc
Q 038105 153 KKFALLLDDL 162 (791)
Q Consensus 153 ~~~LlVlDdv 162 (791)
+.-.+++|.+
T Consensus 73 ~~~~VLIDcl 82 (169)
T cd00544 73 PGDVVLIDCL 82 (169)
T ss_pred CCCEEEEEcH
Confidence 2347999998
No 294
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.015 Score=56.69 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=82.9
Q ss_pred ccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 51 VVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
+=|-+..+.+|.+...- + ..++-|.++|.+|.|||-||++|+++- ...|-. -
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlR-------------v 250 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLR-------------V 250 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhhh-------------h
Confidence 45688899999887642 1 356789999999999999999999875 333321 1
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCcc------------c----ccccccCCCCCCCC
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERV------------D----LKKVGVPLPSRSNS 181 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~~ 181 (791)
+-.++.+.-.. +-..+.+++++... .-+.++++|+++..- . .-++...+..++ .
T Consensus 251 vGseLiQkylG--------dGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd-s 321 (440)
T KOG0726|consen 251 VGSELIQKYLG--------DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-S 321 (440)
T ss_pred hhHHHHHHHhc--------cchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc-c
Confidence 22233222211 11234455555543 468899999996320 0 112222233322 2
Q ss_pred CCCcEEEEEc-Cc----HHHHhhccccceEEeccCChHHHHHHHHHHhC
Q 038105 182 PKNSAVVFTT-RF----VDVCGRMEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 182 ~~~~~iivTt-R~----~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
....+||..| |. +...+-...++.|++..-++..-..+|.-+..
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 3345677755 42 22222223445566655555555555554443
No 295
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.68 E-value=0.0081 Score=56.24 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=65.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC--C---CCC--CEEEEEEeCCccCHHHHHHHHHHHhCCCCC----Cccccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--P---TDF--DYVIWVVVSKDLQLEKIQETIGKKIGLYTD----SWKDKR 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~--~---~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 138 (791)
...+++|+|+.|+|||||.+.+..+.-.. . ..+ ..+.|+. + .+.++.+++... ....-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCC
Confidence 45799999999999999999986321000 0 001 0123321 1 345666665321 111111
Q ss_pred -HHHHHHHHHHHhCCc--eEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEe
Q 038105 139 -LEEKAQDIFKTLSKK--KFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKV 208 (791)
Q Consensus 139 -~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 208 (791)
-+...-.+.+.+..+ +-++++|+.-..-+ .+.+...+... ...|..||++|.+...... .++++.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~--~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL--IDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 122333344555566 77888999954422 22222222221 1246778889988776532 4445554
No 296
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.66 E-value=0.0025 Score=59.89 Aligned_cols=72 Identities=29% Similarity=0.382 Sum_probs=42.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.++|+.|+|||.||.++++.... ....+.|+++ .+++..+...- ........ .+.+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~------~~L~~~l~~~~-------~~~~~~~~----~~~l 106 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITA------SDLLDELKQSR-------SDGSYEEL----LKRL 106 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEH------HHHHHHHHCCH-------CCTTHCHH----HHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeec------Cceeccccccc-------cccchhhh----cCcc
Confidence 467999999999999999999988732 3344667663 44555543321 11122222 2333
Q ss_pred CCceEEEEEcCcc
Q 038105 151 SKKKFALLLDDLW 163 (791)
Q Consensus 151 ~~~~~LlVlDdv~ 163 (791)
.+ .=||||||+-
T Consensus 107 ~~-~dlLilDDlG 118 (178)
T PF01695_consen 107 KR-VDLLILDDLG 118 (178)
T ss_dssp HT-SSCEEEETCT
T ss_pred cc-ccEecccccc
Confidence 33 3577899994
No 297
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.65 E-value=0.0072 Score=56.48 Aligned_cols=120 Identities=21% Similarity=0.150 Sum_probs=65.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc---cCHHHHHHHHH--HHhCCCCC-Cccccc-----
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIG--KKIGLYTD-SWKDKR----- 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~--~~l~~~~~-~~~~~~----- 138 (791)
....|.|+|..|-||||.|..++-+. .+.-..|..+.+-.. .+-...++.+- ........ .+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHH
Confidence 34799999999999999999998876 333334444443322 23333333220 00000000 011111
Q ss_pred --HHHHHHHHHHHhCC-ceEEEEEcCccCc-----ccccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 139 --LEEKAQDIFKTLSK-KKFALLLDDLWER-----VDLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 139 --~~~~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
..+..+...+.+.+ .-=++|||++-.. ...+++...+.. .+.+..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~---rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNA---RPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHc---CCCCCEEEEECCCCC
Confidence 22233444444444 4469999999432 334445445544 566789999999753
No 298
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.64 E-value=0.0074 Score=57.22 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=66.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC--ccCHHHH------HHHHHHHhCCCCC---Cccccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK--DLQLEKI------QETIGKKIGLYTD---SWKDKR 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~~~---~~~~~~ 138 (791)
...+++|.|+.|.|||||++.++.... ...+.++++... ..+.... ..++++.+++... ....-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 457999999999999999999988752 223334433111 1111111 1124555554310 001111
Q ss_pred -HHHHHHHHHHHhCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHh
Q 038105 139 -LEEKAQDIFKTLSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCG 198 (791)
Q Consensus 139 -~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~ 198 (791)
-+...-.+.+.+...+-++++|+.-..-+ .+.+...+.... ...+..||++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~-~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA-RERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHH
Confidence 22233345556667888999999964422 222322232210 111567888888766543
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.64 E-value=0.0077 Score=61.44 Aligned_cols=88 Identities=25% Similarity=0.296 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
+.++++|+|++|+||||++.+++..+.. ......+..++..... ...+.+....+.++.+.. ...+..++.+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 4569999999999999999999887721 1122457777765432 223334444555554432 1223334433333
Q ss_pred HhCCceEEEEEcCc
Q 038105 149 TLSKKKFALLLDDL 162 (791)
Q Consensus 149 ~l~~~~~LlVlDdv 162 (791)
.+.+ .=++++|.+
T Consensus 269 ~~~~-~d~vliDt~ 281 (282)
T TIGR03499 269 RLRD-KDLILIDTA 281 (282)
T ss_pred HccC-CCEEEEeCC
Confidence 3343 357777764
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.63 E-value=0.009 Score=60.36 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=53.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCCC-cccccHHHH-HHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDS-WKDKRLEEK-AQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~l 146 (791)
+.+++.++|++|+||||++..++..+. .....+.++++..... ..+-+...++..+.+.-. ....+.... ...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 468999999999999999999998872 3334677777654222 223334455555533110 011222222 2333
Q ss_pred HHHhCCceEEEEEcCcc
Q 038105 147 FKTLSKKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~~~~~LlVlDdv~ 163 (791)
........-++++|-.-
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 33334445688888884
No 301
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.63 E-value=0.0067 Score=60.38 Aligned_cols=92 Identities=18% Similarity=0.347 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC----ccccc-----
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLYTDS----WKDKR----- 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~----- 138 (791)
+...++|+|.+|+|||||+.++++.. +.+|. .++++-+.+. ....++.+++...-.+.-.. ..+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 45789999999999999999999887 33343 4455555443 34566666665432111000 01111
Q ss_pred -HHHHHHHHHHHh---CCceEEEEEcCccC
Q 038105 139 -LEEKAQDIFKTL---SKKKFALLLDDLWE 164 (791)
Q Consensus 139 -~~~~~~~l~~~l---~~~~~LlVlDdv~~ 164 (791)
.....-.+.+++ .++.+|+++||+-.
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 112333444555 37899999999943
No 302
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.015 Score=60.44 Aligned_cols=89 Identities=19% Similarity=0.153 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
+.++|+|+|++|+||||++..++..+. ..-..+..++..... ...+-+...++.++.+.. ...+...+.+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 347999999999999999999998772 222345666665432 222333344445554321 12344555544443
Q ss_pred HhCC-ceEEEEEcCcc
Q 038105 149 TLSK-KKFALLLDDLW 163 (791)
Q Consensus 149 ~l~~-~~~LlVlDdv~ 163 (791)
.-.. +.=++++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3221 34577888873
No 303
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.62 E-value=0.012 Score=58.44 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=32.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
+....+.|.|++|+|||++|.+++.... .....++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 3568999999999999999999876542 23457889887544
No 304
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.62 E-value=0.013 Score=58.97 Aligned_cols=128 Identities=14% Similarity=0.037 Sum_probs=67.3
Q ss_pred HHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC-CCCCc--
Q 038105 58 LEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL-YTDSW-- 134 (791)
Q Consensus 58 ~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~-- 134 (791)
.+++...+.+.++...++|.|+.|+||||+++.++.... ...+.+++....-... +-..+++..... +....
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~ 172 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGI 172 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecc-hhHHHHHHHhcccccccccc
Confidence 344444444443457899999999999999999998872 2233344431111100 111233333221 11000
Q ss_pred --ccccHHHHHHHHHHHhC-CceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 135 --KDKRLEEKAQDIFKTLS-KKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 135 --~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
...+.-.....+...+. ..+=++++|++-....+..+...+ ..|..+|+||.+..+
T Consensus 173 r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~------~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 173 RTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL------HAGVSIIATAHGRDV 231 (270)
T ss_pred cccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH------hCCCEEEEEechhHH
Confidence 00000001122333332 578899999996665555543333 236789999987655
No 305
>PRK06921 hypothetical protein; Provisional
Probab=96.62 E-value=0.0089 Score=60.22 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=30.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
....+.++|..|+|||.||.++++.+.. .....++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEH
Confidence 3578999999999999999999998721 21355677774
No 306
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.61 E-value=0.0074 Score=65.72 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=55.1
Q ss_pred HHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---
Q 038105 59 EQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW--- 134 (791)
Q Consensus 59 ~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--- 134 (791)
..+-+.|..+ ....++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... +++++...+..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~ 140 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLL 140 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEe
Confidence 3444444433 3457999999999999999999998873 23356889887543 3344332 45555432211
Q ss_pred ccccHHHHHHHHHHHhCCceEEEEEcCc
Q 038105 135 KDKRLEEKAQDIFKTLSKKKFALLLDDL 162 (791)
Q Consensus 135 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv 162 (791)
...+.++..+.+. ..++-++|+|.+
T Consensus 141 ~e~~l~~i~~~i~---~~~~~lVVIDSI 165 (446)
T PRK11823 141 AETNLEAILATIE---EEKPDLVVIDSI 165 (446)
T ss_pred CCCCHHHHHHHHH---hhCCCEEEEech
Confidence 1122333333332 124557777777
No 307
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.015 Score=61.50 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=56.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC-CCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 147 (791)
..++|.++|+.|+||||.+.+++..+.... .....+..+++.... .....+...++.++.+.. ......+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 357999999999999999999998763221 123456677766532 233346666676766431 2223344444443
Q ss_pred HHhCCceEEEEEcCcc
Q 038105 148 KTLSKKKFALLLDDLW 163 (791)
Q Consensus 148 ~~l~~~~~LlVlDdv~ 163 (791)
+ + .+.-++++|.+.
T Consensus 251 ~-~-~~~DlVLIDTaG 264 (388)
T PRK12723 251 Q-S-KDFDLVLVDTIG 264 (388)
T ss_pred H-h-CCCCEEEEcCCC
Confidence 3 3 345789999984
No 308
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00015 Score=69.72 Aligned_cols=98 Identities=24% Similarity=0.297 Sum_probs=74.6
Q ss_pred ccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc--cccCcccccEEe
Q 038105 411 WEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM--GISKLVSLQLLD 488 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~ 488 (791)
+.+++.|+..++.+.++.-...++.|++|.|+-|.++.+.+ +..|++|++|.|+.| .+..+.+ .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 45777888888888888777788999999999999888776 788999999999888 4554433 367888899998
Q ss_pred cCCCccc-ccc-----hhhhcCCCCceee
Q 038105 489 ISNTEVE-ELP-----EELKALVNLKCLN 511 (791)
Q Consensus 489 L~~~~l~-~lp-----~~~~~l~~L~~L~ 511 (791)
|..|.-. .-+ .-+..|+||++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 8876432 122 2366788888886
No 309
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0095 Score=66.60 Aligned_cols=173 Identities=16% Similarity=0.145 Sum_probs=93.7
Q ss_pred CcccchHHHHHHHHHHhc---c---------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLV---Q---------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~---~---------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
..+.|.+...+.+.+.+. . -...+.+.++|++|.|||.||++++... ...|-.+.. .
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~--- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S--- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H---
Confidence 345565655555555432 1 1345689999999999999999999965 334433221 1
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc-------------ccccccCCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSP 182 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~ 182 (791)
.+... ..+..+..++.+++.. +..+..|++|+++.... ...+...+.... ..
T Consensus 311 -----~l~sk--------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-~~ 376 (494)
T COG0464 311 -----ELLSK--------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-KA 376 (494)
T ss_pred -----HHhcc--------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-cc
Confidence 11111 1122233334444443 47889999999974311 112222222211 22
Q ss_pred CCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCC
Q 038105 183 KNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDG 248 (791)
Q Consensus 183 ~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 248 (791)
.+..||-||-.+...+. ......+.+..-+.++..+.|..+....... -......+.+++...|
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--LAEDVDLEELAEITEG 445 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc--chhhhhHHHHHHHhcC
Confidence 33334444433322221 1345688999999999999999998744311 0112334455555555
No 310
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0075 Score=56.53 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC-------------------Cc-----------------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-------------------KD----------------- 113 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-------------------~~----------------- 113 (791)
...||+|+|++|+|||||.|.+..-- ..-.+.+|++.. +.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 44799999999999999999985532 122234444321 01
Q ss_pred --------cCHHHHHHHHHHHhCCCCC--Cc--ccccHHHHHHHHHHHhCCceEEEEEcCccCccccc---ccccCCCCC
Q 038105 114 --------LQLEKIQETIGKKIGLYTD--SW--KDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLK---KVGVPLPSR 178 (791)
Q Consensus 114 --------~~~~~~~~~i~~~l~~~~~--~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~---~~~~~l~~~ 178 (791)
...++...++++++++... .+ +-..-++.+-.|.+.|.-+|-++.||+.-+.-|.+ ++...+..
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~- 181 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD- 181 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH-
Confidence 1224445555566655321 11 22234556677888889999999999996553322 22222211
Q ss_pred CCCCCCcEEEEEcCcHHHHhhc
Q 038105 179 SNSPKNSAVVFTTRFVDVCGRM 200 (791)
Q Consensus 179 ~~~~~~~~iivTtR~~~~~~~~ 200 (791)
....|-..|+.|.+-..+...
T Consensus 182 -LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 182 -LAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred -HHHcCCeEEEEechhHHHHHh
Confidence 134577888888876666554
No 311
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.59 E-value=0.02 Score=61.07 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=40.6
Q ss_pred ccchHHHHHHHHHHhc-----cC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEE
Q 038105 51 VVGLQSQLEQVWRCLV-----QE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWV 108 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~-----~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv 108 (791)
+.-..+.+.++.+||. .. -+.+++.|+|++|+||||.++.++..+ .+..+=|.
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 4445677888888887 22 356799999999999999999998875 44555565
No 312
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.58 E-value=0.006 Score=57.47 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCC-cccccHHHHH-HHHHHH
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDS-WKDKRLEEKA-QDIFKT 149 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l~~~ 149 (791)
++.++|++|+||||+++.++..+. ..-..++.++..... ...+.+...++..+.+... ....+..+.. +.+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~---~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK---KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998873 222346666654332 2333344444444432110 1122333333 333333
Q ss_pred hCCceEEEEEcCccC
Q 038105 150 LSKKKFALLLDDLWE 164 (791)
Q Consensus 150 l~~~~~LlVlDdv~~ 164 (791)
.....-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 444444666887743
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.58 E-value=0.0078 Score=56.15 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=65.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-----CEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-----DYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQ 144 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 144 (791)
...+++|.|+.|.|||||++.++.......+.. ..+.++.-........+.+.+... ... .-..-+...-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~rv 100 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD--VLSGGEQQRL 100 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC--CCCHHHHHHH
Confidence 457999999999999999999988763222211 112222211111111333333210 111 1111223344
Q ss_pred HHHHHhCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEe
Q 038105 145 DIFKTLSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKV 208 (791)
Q Consensus 145 ~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 208 (791)
.+.+.+..++=++++|+.-..-+ .+.+...+.. . +..+|++|.+..... ..++++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~---~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---L--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH---h--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 45555667778889999965433 2222233332 1 356888888766543 23444544
No 314
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.56 E-value=0.0016 Score=62.70 Aligned_cols=112 Identities=26% Similarity=0.320 Sum_probs=80.3
Q ss_pred cCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCC--CcccchhhhccCCcccEEeecCcccccccccc---ccCccc
Q 038105 409 RGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNE--LTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG---ISKLVS 483 (791)
Q Consensus 409 ~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~---~~~l~~ 483 (791)
..+..+..+++.+..+..+..++.+++|+.|.++.|. +..-..-....+++|++|++++|+ +.. +++ +..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhcc
Confidence 3456778888888888888888999999999999994 333223335667999999999994 432 333 566788
Q ss_pred ccEEecCCCcccccc----hhhhcCCCCceeeccCcccccccch
Q 038105 484 LQLLDISNTEVEELP----EELKALVNLKCLNLDWTDVLVEVPQ 523 (791)
Q Consensus 484 L~~L~L~~~~l~~lp----~~~~~l~~L~~L~l~~~~~~~~~p~ 523 (791)
|..|++.+|..+.+- ..+.-+++|+.|+-....- .+.|.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~-~Ea~~ 160 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG-EEAPE 160 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccCC-ccccc
Confidence 999999999766542 2366778888887655543 34443
No 315
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.56 E-value=0.0053 Score=62.89 Aligned_cols=152 Identities=13% Similarity=0.164 Sum_probs=80.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
..+..++|||+.|+|||.+|++++... ...| +-++.+ ++... ..+..+..+..+.+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~---i~vsa~----------eL~sk--------~vGEsEk~IR~~F~ 201 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEP---IVMSAG----------ELESE--------NAGEPGKLIRQRYR 201 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe---EEEEHH----------HhhcC--------cCCcHHHHHHHHHH
Confidence 357899999999999999999999987 3332 222221 11111 11122222233322
Q ss_pred Hh------CCceEEEEEcCccCcc------c--c------cccccC--------CCC---CCCCCCCcEEEEEcCcHHHH
Q 038105 149 TL------SKKKFALLLDDLWERV------D--L------KKVGVP--------LPS---RSNSPKNSAVVFTTRFVDVC 197 (791)
Q Consensus 149 ~l------~~~~~LlVlDdv~~~~------~--~------~~~~~~--------l~~---~~~~~~~~~iivTtR~~~~~ 197 (791)
.. +.++++|+||++|... + . ..+... ++. ......+..||+||-.+...
T Consensus 202 ~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~L 281 (413)
T PLN00020 202 EAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTL 281 (413)
T ss_pred HHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccC
Confidence 22 4579999999997321 0 0 011100 000 00134456678888655432
Q ss_pred hh--c---cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 198 GR--M---EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 198 ~~--~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
.. . .-+..| ..-+.++-.++++.+....+. + .....++++...|=|+
T Consensus 282 DpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 282 YAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S---REDVVKLVDTFPGQPL 333 (413)
T ss_pred CHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C---HHHHHHHHHcCCCCCc
Confidence 11 1 122233 334667777777777655432 1 3456667777666654
No 316
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0088 Score=61.55 Aligned_cols=84 Identities=24% Similarity=0.368 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDIF 147 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 147 (791)
..+|.|-|.+|+|||||..+++.++. ... .++||+...... + .+--+++++.+.+.. ...+.++..+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~--Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQ--Q-IKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHH--H-HHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 47899999999999999999999983 333 789988766532 2 233456676554332 2233333333333
Q ss_pred HHhCCceEEEEEcCccC
Q 038105 148 KTLSKKKFALLLDDLWE 164 (791)
Q Consensus 148 ~~l~~~~~LlVlDdv~~ 164 (791)
+.++-++|+|-+..
T Consensus 166 ---~~~p~lvVIDSIQT 179 (456)
T COG1066 166 ---QEKPDLVVIDSIQT 179 (456)
T ss_pred ---hcCCCEEEEeccce
Confidence 36789999999943
No 317
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.55 E-value=0.025 Score=55.76 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCcccchHHHHHHHHHHhcc----C--CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----E--PAAGIIGLYGMGGVGKTTLLTQINNKFV 96 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~--~~~~vv~i~G~gGiGKTtLa~~~~~~~~ 96 (791)
+..++|-.-..+.++..+.. . .++=+++++|+.|+||.-+++.+++...
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 44567765555555555543 2 3567999999999999999999999873
No 318
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.55 E-value=0.016 Score=59.96 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=44.6
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhccc--C-CCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFV--D-NPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~--~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
+-+.|..+ ....++.|+|+.|+|||+++.+++.... . ....-..++|++....+..+.+ .++++.++.
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 34444433 3568999999999999999999876321 0 1112246899998887676653 445555554
No 319
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.55 E-value=0.006 Score=57.43 Aligned_cols=127 Identities=12% Similarity=0.165 Sum_probs=64.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc--cCHHHHHHHHHHHhCCCCCC---cc-------cc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD--LQLEKIQETIGKKIGLYTDS---WK-------DK 137 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~---~~-------~~ 137 (791)
...+++|.|+.|.|||||++.++.... ...+.++++.... ..... +...++...+. +. -.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNE----LGDHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHH----HHhheEEECCCCccccCcHHHHCcC
Confidence 447999999999999999999988752 2233333322110 01111 11222111100 00 01
Q ss_pred cHHHHHHHHHHHhCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEe
Q 038105 138 RLEEKAQDIFKTLSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKV 208 (791)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 208 (791)
.-+...-.+.+.+..++=++++|+....-+ .+.+...+... ...|..||++|.+..... . .++++.+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL--KAAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHH--HhCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 111223344455566777899999964422 22222223221 123667888888776653 2 3445544
No 320
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.54 E-value=0.0049 Score=59.37 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=104.5
Q ss_pred CccceeEEEcccCCCCC-----CC-CCCCCCCccEEEecCCCCcc----c------chhhhccCCcccEEeecCcccccc
Q 038105 410 GWEMVRRLSLMRNSIDN-----LP-TVPTCPHLLTLFLNDNELTT----I------TDDFFQSMPCLTVLKMSDIRMLQQ 473 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~-----l~-~~~~l~~L~~L~l~~~~~~~----~------~~~~~~~l~~L~~L~l~~~~~~~~ 473 (791)
.+..+..+++++|.|.. +. .+.+-.+|++.+++.-.... + ....+-+||+|+..+||+|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 35667778888887753 11 24556777887777543211 1 112245788899999988865555
Q ss_pred cccc----ccCcccccEEecCCCcccccc--------------hhhhcCCCCceeeccCcccccccch----hHhhcCcC
Q 038105 474 LPMG----ISKLVSLQLLDISNTEVEELP--------------EELKALVNLKCLNLDWTDVLVEVPQ----QLLSNFSR 531 (791)
Q Consensus 474 lp~~----~~~l~~L~~L~L~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~~l~~ 531 (791)
.|+. ++.-..|.+|.+++|.+..+. +....-+.|+.+.+..|++ ...|. ..+..-.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl-engs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL-ENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh-ccCcHHHHHHHHHhhcC
Confidence 5543 455677888888888665322 1234567899999988876 44432 22333458
Q ss_pred CCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhH
Q 038105 532 LRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAY 579 (791)
Q Consensus 532 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 579 (791)
|+++.+..|.|..... ..-+...+..+++|+.|++..|.++..
T Consensus 187 lk~vki~qNgIrpegv-----~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 187 LKEVKIQQNGIRPEGV-----TMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred ceeEEeeecCcCcchh-----HHHHHHHHHHhCcceeeeccccchhhh
Confidence 8999999998764210 111334566788999999999887643
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0061 Score=57.25 Aligned_cols=128 Identities=17% Similarity=0.160 Sum_probs=65.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC--ccccc--------H
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS--WKDKR--------L 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~--------~ 139 (791)
...+++|.|+.|.|||||++.++.... ...+.+++........ -.....+.++.-.+. ..... -
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~--~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDL--DLESLRKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhc--CHHHHHhhEEEEcCCchhccchHHHHhhCHH
Confidence 457999999999999999999988762 2233333332110000 001111122211000 00001 1
Q ss_pred HHHHHHHHHHhCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEe
Q 038105 140 EEKAQDIFKTLSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKV 208 (791)
Q Consensus 140 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l 208 (791)
+...-.+.+.+...+-++++|+....-+ .+.+...+.. ...+..||++|.+...... .++++.+
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~---~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA---LAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH---hcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1122234555667788999999965433 2223233322 1124678888888776543 3444444
No 322
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0054 Score=57.96 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEE
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 109 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 109 (791)
...+|++.|+.|+||||+|+.++..+ ...+..+++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEe
Confidence 45799999999999999999999988 34455566654
No 323
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.53 E-value=0.0034 Score=67.21 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=40.8
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++||++.++.+...+..+ ..|.|.|++|+|||++|+.++...
T Consensus 19 ~~~i~gre~vI~lll~aalag---~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC---CCEEEECCCChhHHHHHHHHHHHh
Confidence 456899999999999999876 789999999999999999999876
No 324
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.52 E-value=0.02 Score=59.79 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=45.5
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
+.+.|..+ +...++-|+|++|+|||++|.+++....... ..-..++|++....++.+.+.+ +++.++.
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 33444432 3568999999999999999999987642110 1124799999988777766644 3444543
No 325
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.51 E-value=0.01 Score=59.61 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+|.|.|..|+|||||+..+...+
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999999887
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=96.51 E-value=0.018 Score=59.75 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC-cccccHHHHH-HHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS-WKDKRLEEKA-QDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l 146 (791)
+..++.++|+.|+||||++.+++..+. ...+ .++.+..... ....+-+...+..++.+... ....+....+ ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 467999999999999999999988772 1223 4555554322 22334456667777654211 1112222322 222
Q ss_pred HHHhCCceEEEEEcCccC
Q 038105 147 FKTLSKKKFALLLDDLWE 164 (791)
Q Consensus 147 ~~~l~~~~~LlVlDdv~~ 164 (791)
...-....-++++|.+-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 222222233899999843
No 327
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.49 E-value=0.021 Score=59.42 Aligned_cols=88 Identities=23% Similarity=0.229 Sum_probs=52.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
..++|.++||.||||||-..+++.++... ..-..|..++.... .+..+-++..++-++++.. ...+..+....+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 36899999999999998887877777311 33345666665543 3455666677777776542 22233333333332
Q ss_pred HhCCceEEEEEcCc
Q 038105 149 TLSKKKFALLLDDL 162 (791)
Q Consensus 149 ~l~~~~~LlVlDdv 162 (791)
+++. =+|.+|-+
T Consensus 279 -l~~~-d~ILVDTa 290 (407)
T COG1419 279 -LRDC-DVILVDTA 290 (407)
T ss_pred -hhcC-CEEEEeCC
Confidence 2333 34445655
No 328
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.009 Score=62.57 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
+..+++++|+.|+||||++.+++..+.. ......+.+++.... ....+-+...++.++.+... .....+....+ .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-A 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-H
Confidence 3579999999999999999999987621 112245666665442 34556666667777765322 11222232333 3
Q ss_pred HhCCceEEEEEcCcc
Q 038105 149 TLSKKKFALLLDDLW 163 (791)
Q Consensus 149 ~l~~~~~LlVlDdv~ 163 (791)
.+.++ -++++|.+-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34454 456699984
No 329
>PRK08233 hypothetical protein; Provisional
Probab=96.47 E-value=0.01 Score=56.38 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|++|+||||+|++++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999887
No 330
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.46 E-value=0.0053 Score=57.52 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
...+++|.|+.|+|||||++.++..... ..+.+++.... ++...+...-..-+...-.+.+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~--------------i~~~~q~~~LSgGq~qrv~lara 85 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDEWDGIT--------------PVYKPQYIDLSGGELQRVAIAAA 85 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC----CCcEEEECCEE--------------EEEEcccCCCCHHHHHHHHHHHH
Confidence 4479999999999999999999886522 22223322100 00000000011112233345555
Q ss_pred hCCceEEEEEcCccCcccc---cccccCCCCCCCCCCCcEEEEEcCcHHHHhh
Q 038105 150 LSKKKFALLLDDLWERVDL---KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 150 l~~~~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~ 199 (791)
+..++-++++|+.-..-+. +.+...+.... ...+..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~-~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLS-EEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEEECCHHHHHH
Confidence 6667789999999644222 12222222100 1123568888887766543
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.46 E-value=0.0069 Score=54.89 Aligned_cols=105 Identities=23% Similarity=0.256 Sum_probs=59.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
...+++|.|+.|.|||||++.++.... ...+.+|++.. ..++... +-..-+...-.+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 457999999999999999999988752 23344444321 0010000 001112223334555
Q ss_pred hCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhh
Q 038105 150 LSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 150 l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~ 199 (791)
+..++-++++|+....-+ .+.+...+.. . +..||++|.+......
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~---~--~~til~~th~~~~~~~ 132 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKE---Y--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHH---c--CCEEEEEECCHHHHHH
Confidence 666778899999964422 2233333332 1 2468888887665543
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.46 E-value=0.021 Score=59.43 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCC---CCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
+.+.|..+ +...++-|+|++|+|||++|.+++...... ...-..++|++....++.+.+.+ +++.++.
T Consensus 84 lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 84 LDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 33444433 356899999999999999999998764210 11123799999988777766543 4455443
No 333
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.46 E-value=0.0023 Score=59.64 Aligned_cols=43 Identities=23% Similarity=0.182 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC-CCCCEEEEEEeCCccC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 115 (791)
...++.+.|+.|+|||.+|+++++.+ . +.....+-++++....
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 35688999999999999999999998 4 4556777777766544
No 334
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.42 E-value=0.017 Score=59.87 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
...+.++|+.|+|||.||.++++.+. .....|+|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH
Confidence 37899999999999999999999873 23346777774
No 335
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.022 Score=55.73 Aligned_cols=128 Identities=17% Similarity=0.198 Sum_probs=73.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCC-------------CCCEEEEEEe----CCc--cC---------------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------DFDYVIWVVV----SKD--LQ--------------- 115 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-------------~f~~~~wv~~----~~~--~~--------------- 115 (791)
....++|+||.|.|||||.+.+..-+...++ .-..+.||+= ... .+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3479999999999999999999885422111 0124555541 000 00
Q ss_pred -------HHHHHHHHHHHhCCCC---CCccc-ccHHHHHHHHHHHhCCceEEEEEcCccCccccc---ccccCCCCCCCC
Q 038105 116 -------LEKIQETIGKKIGLYT---DSWKD-KRLEEKAQDIFKTLSKKKFALLLDDLWERVDLK---KVGVPLPSRSNS 181 (791)
Q Consensus 116 -------~~~~~~~i~~~l~~~~---~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~---~~~~~l~~~~~~ 181 (791)
-++...+.++++++.. ..+.. ..-+..+-.+.+.|.+.+=|++||+.-...|.. .+...+... .
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l--~ 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL--R 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHH--H
Confidence 1244555666666531 11111 223345566778889999999999985432211 111112111 2
Q ss_pred CCCcEEEEEcCcHHHHhh
Q 038105 182 PKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 182 ~~~~~iivTtR~~~~~~~ 199 (791)
..|..|++.|.|......
T Consensus 187 ~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 187 QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HCCCEEEEEeCCcHHhHh
Confidence 238889999998766443
No 336
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.39 E-value=0.011 Score=64.36 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 58 LEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 58 ~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
+..+.+.|..+ ....++.|.|.+|+|||||+.+++.... ..-..++|++....
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs 133 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSGEES 133 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC
Confidence 34444555433 3457999999999999999999988763 22246889887643
No 337
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.39 E-value=0.0042 Score=57.74 Aligned_cols=117 Identities=17% Similarity=0.172 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc--CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL--QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 147 (791)
...+++|.|+.|.|||||++.++... ....+.++++..... +..+ ...+.++... +-..-+...-.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~---~~~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRD---ARRAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHH---HHhcCeEEEE---ecCHHHHHHHHHH
Confidence 44799999999999999999998875 223444554321111 1111 1111121111 1111222333445
Q ss_pred HHhCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHh
Q 038105 148 KTLSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCG 198 (791)
Q Consensus 148 ~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~ 198 (791)
+.+-..+-++++|+.-..-+ .+.+...+... ...+..||++|.+.....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRL--RAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHH--HHCCCEEEEEeCCHHHHH
Confidence 55666778889999965433 22222223221 123667888888876543
No 338
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.38 E-value=0.013 Score=62.91 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCc-ccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSW-KDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 147 (791)
++.++.++|+.|+||||+|..++..+.. .....+..+++.... ...+-++..+.+.+.+.-.. ...++.+......
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~--~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKK--KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3679999999999999999999887621 122345666655432 22333444455555432111 1123333333333
Q ss_pred HHhCCc-eEEEEEcCc
Q 038105 148 KTLSKK-KFALLLDDL 162 (791)
Q Consensus 148 ~~l~~~-~~LlVlDdv 162 (791)
+....+ .-++|+|-.
T Consensus 176 ~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 176 EYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHhcCCCEEEEeCC
Confidence 333222 236666665
No 339
>PTZ00035 Rad51 protein; Provisional
Probab=96.38 E-value=0.031 Score=58.43 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=44.9
Q ss_pred HHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhccc--C-CCCCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 60 QVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFV--D-NPTDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 60 ~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~--~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
.+-+.|..+ +...++.|+|+.|+|||+++.+++.... . ..+.-..++|++....+..+.+ .++++.++.
T Consensus 106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 344444443 3568999999999999999999875431 0 1112346789998777666653 444555554
No 340
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0037 Score=59.08 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCceEEEEEcCccCcccccccc---cCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEE
Q 038105 141 EKAQDIFKTLSKKKFALLLDDLWERVDLKKVG---VPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFK 207 (791)
Q Consensus 141 ~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~ 207 (791)
-.+.++.+.+--+|-+.|||+.|+.-+.+++. ..+... ...++-+++.|...+++....++.++-
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~l--r~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL--REEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHH--hcCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 34666777777789999999999876655432 222111 234566777787788887776665554
No 341
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.37 E-value=0.031 Score=63.93 Aligned_cols=134 Identities=15% Similarity=0.124 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhcCCccccccCCCCcccccccccCCCcccchHHHHHHHHHHhc-cC-CCceEEEEEcCCCCcHHHH
Q 038105 10 RKVAKRLRDVKALKGEGVFEEVAAPDPELISWADERHTEPTVVGLQSQLEQVWRCLV-QE-PAAGIIGLYGMGGVGKTTL 87 (791)
Q Consensus 10 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~L~-~~-~~~~vv~i~G~gGiGKTtL 87 (791)
+.+.+.+.+++...+++.+......... ..... ++. ...|-..|- .+ +..+++-|+|+.|+|||||
T Consensus 9 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~---~v~~i--sTG-------i~~LD~lLg~GGip~GsiteI~G~~GsGKTtL 76 (790)
T PRK09519 9 KALELAVAQIEKSYGKGSVMRLGDEARQ---PISVI--PTG-------SIALDVALGIGGLPRGRVIEIYGPESSGKTTV 76 (790)
T ss_pred HHHHHHHHHHHHHhccchhccccccccc---CCcee--cCC-------cHHHHHhhcCCCccCCeEEEEECCCCCCHHHH
Confidence 3466677777776666633222221111 10011 111 223344444 22 3568999999999999999
Q ss_pred HHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHHHHHhC-CceEEEEEcCcc
Q 038105 88 LTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDIFKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 88 a~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 163 (791)
|.+++... ...-..++|++.....+. ..++++++..+.. .....++....+...+. +..-++|+|.+.
T Consensus 77 al~~~~~a---~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 77 ALHAVANA---QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHHHHHH---HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 99887654 233456899998777663 3677777654321 23334555555555554 457799999995
No 342
>PRK05973 replicative DNA helicase; Provisional
Probab=96.37 E-value=0.016 Score=56.64 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
+...+.|.|.+|+|||++|.+++.... .....++|++.... ..++.+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHH
Confidence 447999999999999999999987762 23456888887665 34555444
No 343
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.37 E-value=0.0077 Score=58.62 Aligned_cols=26 Identities=42% Similarity=0.489 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998865
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.015 Score=60.23 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=56.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
+.++++++|+.|+||||++..++..+. .....+.++++..... ..+-++..++.++.+.. ...+..++.+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 468999999999999999999987762 2234677888765433 34445556666655321 22344555444433
Q ss_pred Hh-CCceEEEEEcCcc
Q 038105 149 TL-SKKKFALLLDDLW 163 (791)
Q Consensus 149 ~l-~~~~~LlVlDdv~ 163 (791)
.- .+..-++++|-+-
T Consensus 280 l~~~~~~D~VLIDTAG 295 (407)
T PRK12726 280 MTYVNCVDHILIDTVG 295 (407)
T ss_pred HHhcCCCCEEEEECCC
Confidence 32 1345678888883
No 345
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.34 E-value=0.026 Score=58.72 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=46.4
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhccc--CCC-CCCCEEEEEEeCCccCHHHHHHHHHHHhCCC
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFV--DNP-TDFDYVIWVVVSKDLQLEKIQETIGKKIGLY 130 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~--~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 130 (791)
|-+.|..+ ....++-|+|.+|+|||++|.+++.... ... ..-..++|++....+..+.+ .++++.++..
T Consensus 112 LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 112 LDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred HHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 33334433 3467899999999999999998875431 011 12237999999998887776 4556666553
No 346
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.34 E-value=0.053 Score=66.78 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++-|.++|+.|+|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999875
No 347
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.34 E-value=0.0024 Score=63.20 Aligned_cols=97 Identities=23% Similarity=0.230 Sum_probs=58.9
Q ss_pred HHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-CCEEEEEEeCCccCHHHHHHHHHHHhCCCCC------
Q 038105 61 VWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQETIGKKIGLYTD------ 132 (791)
Q Consensus 61 l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------ 132 (791)
|-+.|..+ +...++.|.|++|+|||++|.+++... ... -+.++|++..... +++.+.+. .++....
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g 81 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSG 81 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcC
Confidence 33444333 456899999999999999999987654 223 4678898876553 45544433 3332110
Q ss_pred -------Ccc-----cccHHHHHHHHHHHhCC-ceEEEEEcCcc
Q 038105 133 -------SWK-----DKRLEEKAQDIFKTLSK-KKFALLLDDLW 163 (791)
Q Consensus 133 -------~~~-----~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 163 (791)
... ..+..+....+.+.++. +...+|+|.+.
T Consensus 82 ~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 82 KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 000 24566666666666654 44789999984
No 348
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.024 Score=57.60 Aligned_cols=171 Identities=22% Similarity=0.263 Sum_probs=93.3
Q ss_pred CcccchHHHHHHHHHHhc----------cC---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC
Q 038105 49 PTVVGLQSQLEQVWRCLV----------QE---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~----------~~---~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 115 (791)
.++-|-+..++++.+... .. ...+.|.++||.|.|||-+|++++.+. ...|-.+ .++.-.+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv---~~s~lt~ 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINV---SVSNLTS 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCccee---eccccch
Confidence 445677777777777642 11 245789999999999999999999986 4555332 2221111
Q ss_pred HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCC-ceEEEEEcCccCc------cccc-------ccccCCCCCCCC
Q 038105 116 LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSK-KKFALLLDDLWER------VDLK-------KVGVPLPSRSNS 181 (791)
Q Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~------~~~~-------~~~~~l~~~~~~ 181 (791)
+.+ +..+-..+.++..-.. .|..|.+|.+++. .+.+ +... +++....
T Consensus 166 --KWf----------------gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~-~WDGl~s 226 (386)
T KOG0737|consen 166 --KWF----------------GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMA-LWDGLSS 226 (386)
T ss_pred --hhH----------------HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHH-HhccccC
Confidence 000 1122233444443333 6888999999643 1111 1111 1221113
Q ss_pred CCCcEEEE---EcCcHH----HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 182 PKNSAVVF---TTRFVD----VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 182 ~~~~~iiv---TtR~~~----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
..+.+|+| |-|..+ +.+++. +.+++.--+.++-.++++-.......++. -...+|++.+.|.-
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiRR~p--~rf~V~lP~~~qR~kILkviLk~e~~e~~----vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIRRLP--RRFHVGLPDAEQRRKILKVILKKEKLEDD----VDLDEIAQMTEGYS 296 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHhCc--ceeeeCCCchhhHHHHHHHHhcccccCcc----cCHHHHHHhcCCCc
Confidence 44557777 556332 233333 34555444566666666666554443322 23567788888875
No 349
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.31 E-value=0.013 Score=56.27 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCC-------CCCEEEEEEeCCcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------DFDYVIWVVVSKDL 114 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-------~f~~~~wv~~~~~~ 114 (791)
..++.|.|++|+|||+++.+++..+..... .-..++|++.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 468999999999999999999887743221 22478899877663
No 350
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.31 E-value=0.004 Score=56.30 Aligned_cols=37 Identities=27% Similarity=0.225 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
..+|+|+|.+|+||||||+++.+.+ ......+.+++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEecC
Confidence 4689999999999999999999998 444456777763
No 351
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0066 Score=53.92 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT 131 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 131 (791)
+|.|-|++|+||||+|+.+++++ .+.. + +.-.++++++++.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-----gl~~---v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-----GLKL---V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-----CCce---e------eccHHHHHHHHHcCCCH
Confidence 68899999999999999999987 2221 1 23458899999988753
No 352
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.29 E-value=0.036 Score=57.30 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=50.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCCC-cccccH-HHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDS-WKDKRL-EEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~-~~~~~~-~~~~~~l 146 (791)
+..+++++|++|+||||++..++..+. ..-..+..++...... ..+-+...+...+.+.-. ....+. ....+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 467999999999999999999998873 2223566666543221 111122334444432100 011122 2223334
Q ss_pred HHHhCCceEEEEEcCcc
Q 038105 147 FKTLSKKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~~~~~LlVlDdv~ 163 (791)
......+.=++|+|-.-
T Consensus 190 ~~~~~~~~D~ViIDTaG 206 (318)
T PRK10416 190 QAAKARGIDVLIIDTAG 206 (318)
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 44444555688889884
No 353
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.036 Score=61.11 Aligned_cols=176 Identities=13% Similarity=0.088 Sum_probs=91.9
Q ss_pred CCcccchHHHHHHHHHH---hccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 48 EPTVVGLQSQLEQVWRC---LVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~---L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
-.+..|.|+..+++.+. |.+. .-++-|.++|+.|.|||.||++++... .-+|- ..+..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf-----~iSGS--- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFF-----SISGS--- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCce-----eccch---
Confidence 34578988766666555 4432 125679999999999999999999875 32331 11111
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc------------cccc-ccccCCCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER------------VDLK-KVGVPLPSRSNSPK 183 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~-~~~~~l~~~~~~~~ 183 (791)
+..+.+- .-...-.+....+..++-|+++++|.+|.. +..+ .+-..+...+-++.
T Consensus 218 -----~FVemfV-------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 218 -----DFVEMFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred -----hhhhhhc-------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 1111111 111222344445555667899999999743 1111 11111221111222
Q ss_pred -CcEEEE--EcCc----HHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 184 -NSAVVF--TTRF----VDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 184 -~~~iiv--TtR~----~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...|++ |.|. +...+....++.+.++.-+...-.++++-++........-+ ...|+..+-|.-
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfs 355 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFS 355 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCcc
Confidence 223333 4442 12222233455677776676777777776665444222222 222666666654
No 354
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.011 Score=56.99 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|+|++|+|||||.+.++.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998754
No 355
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.25 E-value=0.034 Score=50.85 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+.++-.|+|..|+|||||..+++...
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhc
Confidence 46899999999999999999886643
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.23 E-value=0.031 Score=60.41 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=52.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
.+++.++|++|+||||++.+++..+.. ......+..++...... ..+-+...++.++++.. ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~-~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYAL-LYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 468999999999999999999877620 12335677787755321 22334444555554432 12233444444443
Q ss_pred hCCceEEEEEcCc
Q 038105 150 LSKKKFALLLDDL 162 (791)
Q Consensus 150 l~~~~~LlVlDdv 162 (791)
+. ..-++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 33 3568889976
No 357
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.032 Score=55.85 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccH---HHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRL---EEKAQD 145 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~~ 145 (791)
+..+++=|+|+.|.||||+|.+++-.. ......++|++.....+.+.+..-....+.-- -..+..+. .+.+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l-~v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNL-LVSQPDTGEQQLEIAEK 133 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcce-eEecCCCHHHHHHHHHH
Confidence 456899999999999999999987765 33444899999988877765533322212100 00012222 233444
Q ss_pred HHHHhCCceEEEEEcCc
Q 038105 146 IFKTLSKKKFALLLDDL 162 (791)
Q Consensus 146 l~~~l~~~~~LlVlDdv 162 (791)
+.+....+--|+|+|.+
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444444578999988
No 358
>PRK07667 uridine kinase; Provisional
Probab=96.21 E-value=0.0094 Score=57.13 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=30.4
Q ss_pred HHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 58 LEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 58 ~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++.+.+.+.+. +...+|+|.|.+|+||||+|+.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556666553 356899999999999999999999887
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0073 Score=56.84 Aligned_cols=120 Identities=18% Similarity=0.225 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---ccc--------cc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKD--------KR 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~--------~~ 138 (791)
...+++|+|+.|.|||||++.++.... ...+.++++........ ..+...++.-.+. ... -+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 457999999999999999999988652 23344444321111100 1111222110000 011 01
Q ss_pred -HHHHHHHHHHHhCCceEEEEEcCccCcccc---cccccCCCCCCCCCCCcEEEEEcCcHHHHh
Q 038105 139 -LEEKAQDIFKTLSKKKFALLLDDLWERVDL---KKVGVPLPSRSNSPKNSAVVFTTRFVDVCG 198 (791)
Q Consensus 139 -~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~~~~~iivTtR~~~~~~ 198 (791)
-+...-.+.+.+..++=++++|+....-+. +.+...+... ...|..+|++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~--~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL--KKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH--HHCCCEEEEECCCHHHHH
Confidence 112233455666778889999999654322 2222222221 123577889998876554
No 360
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.20 E-value=0.02 Score=63.42 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=60.7
Q ss_pred HHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc--
Q 038105 58 LEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW-- 134 (791)
Q Consensus 58 ~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-- 134 (791)
+..+.+.|-.+ ....++.|.|++|+|||||+.+++... ....+.++|++.... ..++.... +.++...+.+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~ 322 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQ 322 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhh
Confidence 34455555443 456899999999999999999998876 234467888876554 45555553 5555432110
Q ss_pred -----------ccccHHHHHHHHHHHhCC-ceEEEEEcCc
Q 038105 135 -----------KDKRLEEKAQDIFKTLSK-KKFALLLDDL 162 (791)
Q Consensus 135 -----------~~~~~~~~~~~l~~~l~~-~~~LlVlDdv 162 (791)
.....++.+..+.+.... ++-.+|+|.+
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 111234455555555533 4456777777
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.20 E-value=0.017 Score=58.16 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=33.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
+...++.|.|++|+|||++|.+++... ...-..++|++....
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC
Confidence 356899999999999999999997765 223457889998743
No 362
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.20 E-value=0.024 Score=55.97 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=36.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
...++.|.|+.|+||||+|.+++.... ..-..++|++... +..++.+.+ ..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 456999999999999999988776652 2224567777443 445666665 3344
No 363
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.18 E-value=0.006 Score=66.29 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 50 TVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+++|.++.++++++.|.. +.+.+++.++||.|+||||||+.++.-+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 479999999999998832 2356899999999999999999999876
No 364
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.18 E-value=0.012 Score=56.24 Aligned_cols=45 Identities=24% Similarity=0.195 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
++.|.|++|+|||++|.+++.... ..-..++|++.... .+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999987762 33456889887543 4444444
No 365
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.029 Score=60.86 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=49.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
...+++|+|++|+||||++.+++..+.. ......+..++..... ...+.+....+.++.... ...+..++...+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 4579999999999999999999877622 1222446666654322 222233333344443221 112233333333 3
Q ss_pred HhCCceEEEEEcCcc
Q 038105 149 TLSKKKFALLLDDLW 163 (791)
Q Consensus 149 ~l~~~~~LlVlDdv~ 163 (791)
.+.+ .-+|++|..-
T Consensus 425 ~l~~-~DLVLIDTaG 438 (559)
T PRK12727 425 RLRD-YKLVLIDTAG 438 (559)
T ss_pred Hhcc-CCEEEecCCC
Confidence 3333 4588889884
No 366
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.015 Score=55.35 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=43.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
+..+|+|.|.+|+||||+|++++..+ +...-.++ +...... ..-...........-+-...-+.+-+.+.+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~I--~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVI--SLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceEe--ecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 45799999999999999999999998 33322221 1111000 000111111222222222345566677777777
Q ss_pred hCCce
Q 038105 150 LSKKK 154 (791)
Q Consensus 150 l~~~~ 154 (791)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77776
No 367
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.17 E-value=0.031 Score=53.74 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCC---EEEEEEeCCccCHHHHHHHHHHH-hCCCCCCcccccHHHHHHHHHH
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFD---YVIWVVVSKDLQLEKIQETIGKK-IGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
+|+|.|++|+||||+|++++..+.. .... .+..+..............-... -...-.....-+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999998832 2222 23444433322222222211111 0111112234556666676766
Q ss_pred HhCCceE
Q 038105 149 TLSKKKF 155 (791)
Q Consensus 149 ~l~~~~~ 155 (791)
..+++.+
T Consensus 79 L~~g~~i 85 (194)
T PF00485_consen 79 LKNGGSI 85 (194)
T ss_dssp HHTTSCE
T ss_pred HhCCCcc
Confidence 6565554
No 368
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.16 E-value=0.012 Score=59.58 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=49.0
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCccccc
Q 038105 59 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKR 138 (791)
Q Consensus 59 ~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 138 (791)
..+++.+... .+-|.++|+.|+|||++++.+...+. ...| .+.-++++...+...+++.+-..+......
T Consensus 23 ~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~----- 92 (272)
T PF12775_consen 23 SYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRGR----- 92 (272)
T ss_dssp HHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTTE-----
T ss_pred HHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC-----
Confidence 3444544443 46789999999999999999988762 1221 344556655544444433222221110000
Q ss_pred HHHHHHHHHHHhCCceEEEEEcCcc
Q 038105 139 LEEKAQDIFKTLSKKKFALLLDDLW 163 (791)
Q Consensus 139 ~~~~~~~l~~~l~~~~~LlVlDdv~ 163 (791)
...--.+++.++++||+.
T Consensus 93 -------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 -------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp -------EEEEESSSEEEEEEETTT
T ss_pred -------CCCCCCCcEEEEEecccC
Confidence 000013678899999994
No 369
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.14 E-value=0.018 Score=51.04 Aligned_cols=35 Identities=26% Similarity=0.501 Sum_probs=13.3
Q ss_pred CCCCCccEEEecCCCCcccchhhhccCCcccEEeec
Q 038105 431 PTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMS 466 (791)
Q Consensus 431 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 466 (791)
..+.+|+.+.+..+ +..+....|.+++.|+.+.+.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred cccccccccccccc-ccccceeeeeccccccccccc
Confidence 34444444444442 334444444444444444443
No 370
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0069 Score=57.33 Aligned_cols=125 Identities=24% Similarity=0.238 Sum_probs=62.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCC---Cccc----------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD---SWKD---------- 136 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~---------- 136 (791)
...+++|.|+.|.|||||++.++.... ...+.+.++.........-.....+.++...+ ....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE----PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 457999999999999999999987652 23344444321100000000111112211000 0000
Q ss_pred cc-HHHHHHHHHHHhCCceEEEEEcCccCcccc---cccccCCCCCCCCCCCcEEEEEcCcHHHHhh
Q 038105 137 KR-LEEKAQDIFKTLSKKKFALLLDDLWERVDL---KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 137 ~~-~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~---~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~ 199 (791)
-+ -+...-.+.+.+..++=++++|+.-..-|. +.+...+.... ...+..+|++|.+......
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~-~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ-AQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHH
Confidence 01 122233445556677889999999654332 22222222210 1125678888887766543
No 371
>PRK06547 hypothetical protein; Provisional
Probab=96.13 E-value=0.0081 Score=56.07 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 63 RCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 63 ~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+... ...+|+|.|++|+||||+|+.+++..
T Consensus 8 ~~~~~~-~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 8 ARLCGG-GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHhhcC-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 334443 77899999999999999999998875
No 372
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.07 E-value=0.025 Score=60.62 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=37.4
Q ss_pred CCcccchHHHHHHHHHHhcc-------------C--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ-------------E--PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~-------------~--~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+||.+..++.+...+.+ + ...+.+.++|+.|+|||++|+.++..+
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999888766521 0 023579999999999999999999876
No 373
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.07 E-value=0.026 Score=55.59 Aligned_cols=130 Identities=23% Similarity=0.273 Sum_probs=69.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCC--C--------------CEEEEEE----------------eC------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD--F--------------DYVIWVV----------------VS------ 111 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~--f--------------~~~~wv~----------------~~------ 111 (791)
...+++|.|+.|+|||||.+.++.-+....+. . ..+.|++ .+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 45899999999999999999998865221110 0 0111221 00
Q ss_pred ----CccCHHHHHHHHHHHhCCCC---CCcccccHHH-HHHHHHHHhCCceEEEEEcCccCccccc---ccccCCCCCCC
Q 038105 112 ----KDLQLEKIQETIGKKIGLYT---DSWKDKRLEE-KAQDIFKTLSKKKFALLLDDLWERVDLK---KVGVPLPSRSN 180 (791)
Q Consensus 112 ----~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~~~~---~~~~~l~~~~~ 180 (791)
....-++...+.++.++... ..+..-+-.| ..-.+.+.+.+.+=++++|+.-+.-|+. ++...+... .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l-~ 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL-N 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH-H
Confidence 01111224444455555431 1122222223 3445556678888889999985432221 111111110 0
Q ss_pred CCCCcEEEEEcCcHHHHhhc
Q 038105 181 SPKNSAVVFTTRFVDVCGRM 200 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~~~ 200 (791)
...|..||+++.|...+..+
T Consensus 186 ~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 186 REKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred HhcCCEEEEEecCHHHHHHh
Confidence 24467899999998776654
No 374
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.07 E-value=0.022 Score=48.97 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=37.2
Q ss_pred CCcccchHHHHHHHHHHhcc------CCCceEEEEEcCCCCcHHHHHHHHHhcccC
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ------EPAAGIIGLYGMGGVGKTTLLTQINNKFVD 97 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~ 97 (791)
...++|-.-..+.+.+++.+ ...+-|++++|+.|+|||.+++.+++.+..
T Consensus 24 ~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 24 QRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 45678877666666665543 235678999999999999999999888533
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.07 E-value=0.019 Score=61.28 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
...+|.++|+.|+||||+|.+++..+. .....+..+++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~---~~G~kV~lV~~D 137 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ---RKGFKPCLVCAD 137 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCCEEEEcCc
Confidence 468999999999999999999988762 222245555554
No 376
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.16 Score=51.30 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.-+++...+..+.-.+...++|+.|+||+++|..++..+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 446677777776456778899999999999999998876
No 377
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.03 E-value=0.027 Score=59.58 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+++|+|++|.|||||||.+.--+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 4789999999999999999997765
No 378
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.00 E-value=0.011 Score=51.85 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 57 QLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 57 ~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+.+++-+.|... ....+|.+.|.-|+||||+++.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444331 234799999999999999999999886
No 379
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.99 E-value=0.011 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|.|.|++|+||||+|+++++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 380
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.98 E-value=0.012 Score=66.25 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=58.5
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
-+.++|.++.++.|...+... +.+.++|+.|+||||+|+.+++.+. ...++.++|+.- ...+....++.+...+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~---~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR---RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC---CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 456899999999888877765 4799999999999999999998862 334577778665 4557777778877766
Q ss_pred C
Q 038105 128 G 128 (791)
Q Consensus 128 ~ 128 (791)
+
T Consensus 104 G 104 (637)
T PRK13765 104 G 104 (637)
T ss_pred C
Confidence 5
No 381
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.93 E-value=0.027 Score=55.90 Aligned_cols=62 Identities=26% Similarity=0.321 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCC-------CCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNP-------TDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS 133 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~-------~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~ 133 (791)
.++.|+|.||+||||++..++-.+.... ..-..+++|++... .++-.=++.+..+++++..+
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPad 159 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPAD 159 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHh
Confidence 5677889999999999887654432222 22346888888654 35566677888888876543
No 382
>PRK13695 putative NTPase; Provisional
Probab=95.93 E-value=0.014 Score=54.89 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++|+|.+|+|||||++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 383
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.92 E-value=0.014 Score=58.83 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCccc
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKD 136 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 136 (791)
.++.+.+++.. ....|.|.|+.|.||||+++.+..... ..-..++.+ ....... +..+ .+.... .
T Consensus 68 ~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iiti--Edp~E~~--~~~~-~q~~v~-----~ 132 (264)
T cd01129 68 NLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITV--EDPVEYQ--IPGI-NQVQVN-----E 132 (264)
T ss_pred HHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEE--CCCceec--CCCc-eEEEeC-----C
Confidence 33444444433 346899999999999999999987762 221233333 2221110 0000 111111 1
Q ss_pred ccHHHHHHHHHHHhCCceEEEEEcCccCcccccc
Q 038105 137 KRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKK 170 (791)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 170 (791)
.........+...++..+-.++++++.+......
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 1112345667777888999999999977655443
No 384
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.91 E-value=0.016 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999998876
No 385
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.91 E-value=0.0062 Score=47.02 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+++|.|..|+||||+++++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 386
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.87 E-value=0.0062 Score=54.05 Aligned_cols=22 Identities=36% Similarity=0.771 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 038105 74 IGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~ 95 (791)
|+|.|+.|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 387
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.015 Score=53.64 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=63.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
...+++|+|+.|.|||||++.++... ....+.++++....... ........++...+ -... +...-.+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q--lS~G-~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ--LSGG-QRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccC--CHHHHHhceEEEee--CCHH-HHHHHHHHHH
Confidence 34799999999999999999998876 22344455543211110 01111222221110 0111 2233335555
Q ss_pred hCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhh
Q 038105 150 LSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 150 l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~ 199 (791)
+...+=++++|+....-+ ...+...+... ...+..++++|.+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~--~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLREL--AEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH--HHCCCEEEEEeCCHHHHHH
Confidence 566678899999965433 22222222221 1224678888887766554
No 388
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.029 Score=61.25 Aligned_cols=216 Identities=15% Similarity=0.150 Sum_probs=111.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
...+-+.++|+.|+|||-++++|+++. ..+ .+.+++ . ++...+. ......+++.+.+
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~---~a~---~~~i~~------p----eli~k~~-------gEte~~LR~~f~~ 272 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY---GAF---LFLING------P----ELISKFP-------GETESNLRKAFAE 272 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh---Cce---eEeccc------H----HHHHhcc-------cchHHHHHHHHHH
Confidence 356789999999999999999999986 211 111111 1 2222221 2233445666666
Q ss_pred HhCCc-eEEEEEcCccCcc-------c-cc----ccccCCCCCCCCC--CCcEEEEEcCcHHHH----hhccccceEEec
Q 038105 149 TLSKK-KFALLLDDLWERV-------D-LK----KVGVPLPSRSNSP--KNSAVVFTTRFVDVC----GRMEDRRMFKVA 209 (791)
Q Consensus 149 ~l~~~-~~LlVlDdv~~~~-------~-~~----~~~~~l~~~~~~~--~~~~iivTtR~~~~~----~~~~~~~~~~l~ 209 (791)
....+ +.++.+|+++... . .. .+...+.. .+ .+..||-||+.+... ++...++.+.+.
T Consensus 273 a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg---~~~~~~vivl~atnrp~sld~alRRgRfd~ev~Ig 349 (693)
T KOG0730|consen 273 ALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDG---LKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIG 349 (693)
T ss_pred HhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhh---CcCcCcEEEEEecCCccccChhhhcCCCcceeeec
Confidence 66667 8999999997531 1 11 11111111 22 223334456543221 112455677888
Q ss_pred cCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc---hHHHHHHHHhhcC-CCHHHHHHHHHHHhhhccccCC
Q 038105 210 CLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP---LALITIGRAMAYK-KTPEEWRYAIEVLRRSASEFEG 285 (791)
Q Consensus 210 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P---lal~~~~~~l~~~-~~~~~w~~~l~~l~~~~~~~~~ 285 (791)
--+.++-.+++..+....... .......++..+.|.- |+...-++.+... .+.+..+.++.... .+.
T Consensus 350 iP~~~~RldIl~~l~k~~~~~----~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~~~~~~~A~~~i~-----psa 420 (693)
T KOG0730|consen 350 IPGSDGRLDILRVLTKKMNLL----SDVDLEDIAVSTHGYVGADLAALCREASLQATRRTLEIFQEALMGIR-----PSA 420 (693)
T ss_pred CCCchhHHHHHHHHHHhcCCc----chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC-----chh
Confidence 888888888887776554422 1345667777787764 2222222222211 12223333222211 112
Q ss_pred CchhhhhhhhhcccCCCC-hhhhHHHhhhccCCCC
Q 038105 286 LGKEVYPLLKFSYDCLPN-DAIRSCFLYCCLYPED 319 (791)
Q Consensus 286 ~~~~l~~~l~~s~~~L~~-~~~k~~~~~~~~f~~~ 319 (791)
....+...-..+|+.... +.+|.-+...-.||..
T Consensus 421 ~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~ 455 (693)
T KOG0730|consen 421 LREILVEMPNVSWDDIGGLEELKRELQQAVEWPLK 455 (693)
T ss_pred hhheeccCCCCChhhccCHHHHHHHHHHHHhhhhh
Confidence 223445555566666653 3455555555555443
No 389
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.86 E-value=0.063 Score=60.62 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=46.0
Q ss_pred CCCcccchHHHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 47 TEPTVVGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 47 ~~~~~vGR~~~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
....++|....++++.+.+..- .....|.|+|..|+|||++|+.+.+.-.... ...+.+++...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~ 258 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAAL 258 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCC
Confidence 3567899999999999887652 2346788999999999999999987652112 23455565543
No 390
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.84 E-value=0.021 Score=60.03 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=39.8
Q ss_pred CCcccchHHHHHHHHHHhccC-------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE-------------PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~-------------~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|.+..++.+..++... ...+.+.++|+.|+|||++|+.++..+
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999998887531 114689999999999999999999886
No 391
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.83 E-value=0.042 Score=54.81 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCC---------CCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCC----------
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNP---------TDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYT---------- 131 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~---------~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---------- 131 (791)
.+..|+|++|+|||+||.+++....... ..-..|++++...+. .+..=+.++...++...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g 81 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSG 81 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEecc
Confidence 3678999999999999999987542111 122357787776543 23333344444332110
Q ss_pred --CCc--cc---ccHHHHHHHHHHHh-CCceEEEEEcCccC--------cccccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 132 --DSW--KD---KRLEEKAQDIFKTL-SKKKFALLLDDLWE--------RVDLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 132 --~~~--~~---~~~~~~~~~l~~~l-~~~~~LlVlDdv~~--------~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
... .. .........+.+.. ..++-++|+|.+.. ......+...+.... ...+..||+++....
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a-~~~g~avl~v~H~~K 160 (239)
T cd01125 82 RIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIA-AQTGAAILLVHHVRK 160 (239)
T ss_pred CCCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHH-HHhCCEEEEEeccCc
Confidence 000 00 01122333444433 45678999997632 111112211111100 123567777776432
Q ss_pred HHh---------------hccccceEEeccCChHHHHHH
Q 038105 196 VCG---------------RMEDRRMFKVACLSDEDAWEL 219 (791)
Q Consensus 196 ~~~---------------~~~~~~~~~l~~l~~~e~~~l 219 (791)
... .......+.+.+++++|+.++
T Consensus 161 ~~~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 161 GSAKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 111 001234678888888887774
No 392
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.83 E-value=0.056 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999999999999999998764
No 393
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.82 E-value=0.022 Score=59.91 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHHhccC-------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE-------------PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~-------------~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+||.++..+.+.-++... ...+.|.++|+.|+|||++|++++...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999988776531 124689999999999999999999887
No 394
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.82 E-value=0.048 Score=58.14 Aligned_cols=48 Identities=21% Similarity=0.255 Sum_probs=37.9
Q ss_pred CCcccchHHHHHHHHHHhcc----------CC-------CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----------EP-------AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----------~~-------~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+||.+..++.+...+.. .. ....+.++|+.|+|||++|+.++..+
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 55689999999988776621 10 12579999999999999999999876
No 395
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.80 E-value=0.015 Score=57.58 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 68 EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 68 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++..+|+|.|++|.|||||++.++..+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999887
No 396
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.051 Score=62.05 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
.++++++|+.|+||||.+.+++..+.. ......+..++..... ...+-++...+.++++.. ...+..++.+.+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTDSFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 479999999999999999999877621 1222356666654322 244556666677765432 1224444444443 3
Q ss_pred hCCceEEEEEcCcc
Q 038105 150 LSKKKFALLLDDLW 163 (791)
Q Consensus 150 l~~~~~LlVlDdv~ 163 (791)
+.++ =++++|-.-
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 4444 377778774
No 397
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.78 E-value=0.045 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998765
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.03 Score=59.18 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
..+++++|++|+||||++.+++..+.. ... ..+..++...... ....+...++.++++.. ...........+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~--~~~~~~~l~~~l~-- 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL-HMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFY--PVKDIKKFKETLA-- 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CeEEEecccchhhhHHHHHHHHHHhcCCCee--ehHHHHHHHHHHH--
Confidence 468999999999999999999875411 112 3455566544222 23344444455554321 1112222222222
Q ss_pred hCCceEEEEEcCc
Q 038105 150 LSKKKFALLLDDL 162 (791)
Q Consensus 150 l~~~~~LlVlDdv 162 (791)
....=++|+|-.
T Consensus 297 -~~~~D~VLIDTa 308 (432)
T PRK12724 297 -RDGSELILIDTA 308 (432)
T ss_pred -hCCCCEEEEeCC
Confidence 233456889944
No 399
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.77 E-value=0.041 Score=58.91 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh-----CCCCCCccc----ccHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI-----GLYTDSWKD----KRLE 140 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~----~~~~ 140 (791)
....++|+|++|+|||||++.++... .....++++......++.+......... ..-.+..+. ....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 44689999999999999999887654 2233455554434445554444333322 111110000 0111
Q ss_pred HHHHHHHHHh--CCceEEEEEcCccC
Q 038105 141 EKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 141 ~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
...-.+.+++ +++.+|+++||+-.
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchHH
Confidence 2233334444 47899999999954
No 400
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.77 E-value=0.006 Score=52.03 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 038105 74 IGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~ 95 (791)
|.|+|++|+|||++|+.++..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988776
No 401
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.011 Score=52.61 Aligned_cols=26 Identities=46% Similarity=0.493 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFV 96 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~ 96 (791)
..-|+|+|++|+||||++.++++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 45789999999999999999998873
No 402
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.76 E-value=0.035 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44799999999999999999998765
No 403
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.045 Score=55.85 Aligned_cols=69 Identities=17% Similarity=0.193 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS 151 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 151 (791)
+-|.++|++|.|||-||++|+... . +-|++++... +... ..+..+.++..+++..+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc---~-----tTFFNVSsst--------ltSK--------wRGeSEKlvRlLFemAR 301 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC---G-----TTFFNVSSST--------LTSK--------WRGESEKLVRLLFEMAR 301 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh---c-----CeEEEechhh--------hhhh--------hccchHHHHHHHHHHHH
Confidence 578999999999999999999875 2 4455554431 1111 12233444555555544
Q ss_pred C-ceEEEEEcCccC
Q 038105 152 K-KKFALLLDDLWE 164 (791)
Q Consensus 152 ~-~~~LlVlDdv~~ 164 (791)
- -+..|+||+++.
T Consensus 302 fyAPStIFiDEIDs 315 (491)
T KOG0738|consen 302 FYAPSTIFIDEIDS 315 (491)
T ss_pred HhCCceeehhhHHH
Confidence 3 366777888763
No 404
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.73 E-value=0.019 Score=65.73 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|+|.+|+|||||++.+..-+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999998776
No 405
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.72 E-value=0.03 Score=63.47 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=52.3
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
-+.++|.++.++.+...+... +.+.++|+.|+||||+|+.+++.+. ...|..++++. ....+...++..++..+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~---~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK---RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGE 90 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC---CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhh
Confidence 456899999888888877765 3666999999999999999999872 22334344333 22334455566666666
Q ss_pred C
Q 038105 128 G 128 (791)
Q Consensus 128 ~ 128 (791)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 5
No 406
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.70 E-value=0.0095 Score=58.10 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+|+|.|++|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999876
No 407
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.70 E-value=0.011 Score=57.62 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
.+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 408
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.69 E-value=0.032 Score=53.86 Aligned_cols=98 Identities=26% Similarity=0.325 Sum_probs=57.3
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC----cc
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS----WK 135 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~ 135 (791)
.++.+..=.+...++|.|.+|+|||+|+.++++.. .-+.++++-+.+. ....++.+++...-...... ..
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~ 79 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS 79 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccc
Confidence 34444432234789999999999999999999886 2344577777654 45666766664431111000 00
Q ss_pred cccH------HHHHHHHHHHh--CCceEEEEEcCcc
Q 038105 136 DKRL------EEKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 136 ~~~~------~~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
.... ....-.+.+++ +++.+|+++||+.
T Consensus 80 ~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 80 DEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhH
Confidence 1111 11112222222 6899999999994
No 409
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.68 E-value=0.0089 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|.+.|++|+||||+|++++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998776
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.052 Score=57.94 Aligned_cols=88 Identities=24% Similarity=0.307 Sum_probs=47.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
...+++++|+.|+||||+++.++..+.. ......+.++.... .....+-+...++.++++... ..+..+....+ .
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~-~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~--v~~~~dl~~al-~ 265 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVI-RHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS--IKDIADLQLML-H 265 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec--CCCHHHHHHHH-H
Confidence 4579999999999999999998875421 11222334444332 223344455666666654321 12223332222 2
Q ss_pred HhCCceEEEEEcCc
Q 038105 149 TLSKKKFALLLDDL 162 (791)
Q Consensus 149 ~l~~~~~LlVlDdv 162 (791)
.+++. -++++|-.
T Consensus 266 ~l~~~-d~VLIDTa 278 (420)
T PRK14721 266 ELRGK-HMVLIDTV 278 (420)
T ss_pred HhcCC-CEEEecCC
Confidence 33433 45666665
No 411
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.64 E-value=0.021 Score=55.64 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=37.2
Q ss_pred HHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC
Q 038105 57 QLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 57 ~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 115 (791)
+..++.+.+.. .++..+|+|+|++|+|||||..++...+.. .+.--.++-|+-+..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCC
Confidence 34455555544 356789999999999999999999888832 23333566666555544
No 412
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.63 E-value=0.074 Score=54.28 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
...++.|.|++|+||||++.+++.... ...-..++|+++... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 346899999999999999999988762 222467899987664 44555555443
No 413
>PRK06762 hypothetical protein; Provisional
Probab=95.59 E-value=0.01 Score=55.39 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|+|+.|+||||+|+++++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 414
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.58 E-value=0.0057 Score=34.88 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=7.5
Q ss_pred ccEEecCCCcccccchh
Q 038105 484 LQLLDISNTEVEELPEE 500 (791)
Q Consensus 484 L~~L~L~~~~l~~lp~~ 500 (791)
|++||+++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 415
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.58 E-value=0.042 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 45799999999999999999998875
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.57 E-value=0.038 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998764
No 417
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.57 E-value=0.021 Score=62.01 Aligned_cols=103 Identities=20% Similarity=0.187 Sum_probs=54.5
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEE-EEEeCCcc-CHHHHHHHHHHHhCCCCCCc---
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVI-WVVVSKDL-QLEKIQETIGKKIGLYTDSW--- 134 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--- 134 (791)
+++++|..=+....+.|+|+.|+|||||+..+++..... +-++.+ ++-+.... .+.+....+-.++-.+..+.
T Consensus 405 RvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n--~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~ 482 (672)
T PRK12678 405 RVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN--NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPS 482 (672)
T ss_pred eeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc--CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHH
Confidence 345555543355788999999999999999999876322 223333 33343332 23333222211111111110
Q ss_pred ccccHHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 135 KDKRLEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 135 ~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
......+..-.+.+++ .++.+||++|++-.
T Consensus 483 ~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 483 DHTTVAELAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCchH
Confidence 0111223333444444 57899999999943
No 418
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.0092 Score=55.17 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+.|.+.|.+|+||||+|++++..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 678999999999999999999887
No 419
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.55 E-value=0.037 Score=53.43 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
...+++|+|+.|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999876
No 420
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.55 E-value=0.02 Score=57.60 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFV 96 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~ 96 (791)
+.|.|+|.+|+||||+|+++...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6799999999999999999999873
No 421
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.55 E-value=0.048 Score=58.06 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=52.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC----ccccc------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS----WKDKR------ 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~------ 138 (791)
....++|+|+.|+|||||++.++... ..+.+++.-+.+. ....++.+.+...-++.-.. ..+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45789999999999999999998654 2245555555443 34455555554432221000 01111
Q ss_pred HHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 139 LEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 139 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.....-.+.+++ +++.+|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112233344444 57899999999954
No 422
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.55 E-value=0.011 Score=57.49 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|++|+||||||+.++..+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999876
No 423
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.54 E-value=0.013 Score=60.39 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHH
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 121 (791)
+++.+.|-||+||||+|.+.+-... .....++-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A---~~G~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA---RRGKRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH---HTTS-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh---hCCCCeeEeecCCCccHHHHhC
Confidence 6899999999999999999888773 2334577777766655555543
No 424
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.54 E-value=0.052 Score=54.00 Aligned_cols=96 Identities=13% Similarity=0.088 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCc----cccc-----
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVD-NPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSW----KDKR----- 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~----- 138 (791)
+...++|+|.+|+|||+|+..++++..- .++.-+.++++-+.+. ....++.+++...-.+.-... .+..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999998876510 1123466777777654 456677776655432210000 0111
Q ss_pred -HHHHHHHHHHHh---CCceEEEEEcCccCc
Q 038105 139 -LEEKAQDIFKTL---SKKKFALLLDDLWER 165 (791)
Q Consensus 139 -~~~~~~~l~~~l---~~~~~LlVlDdv~~~ 165 (791)
.....-.+.+++ .++.+|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 111233344444 367899999999543
No 425
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.53 E-value=0.0078 Score=51.86 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCE
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY 104 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~ 104 (791)
.|.|+|..|+|||++|++++... ...|..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 37899999999999999999987 556654
No 426
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.52 E-value=0.033 Score=49.38 Aligned_cols=103 Identities=17% Similarity=0.332 Sum_probs=60.3
Q ss_pred CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEEecCCCcccccch-hhhcCCCC
Q 038105 430 VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISNTEVEELPE-ELKALVNL 507 (791)
Q Consensus 430 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L 507 (791)
+..+.+|+.+.+.. .+..+....|.++..|+.+.+..+ +..++. .+..+.+|+.+.+.. .+..++. .+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 45677888888874 466777777888888999988774 444443 467777888888866 4555544 36678888
Q ss_pred ceeeccCcccccccchhHhhcCcCCCeeeeee
Q 038105 508 KCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFA 539 (791)
Q Consensus 508 ~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~ 539 (791)
+.+.+..+ + ..++...+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~-~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-I-TEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-c-cEEchhhhcCC-CceEEEECC
Confidence 88888764 2 56666667777 888887764
No 427
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.52 E-value=0.079 Score=54.55 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=51.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe-CCccCHHHHHHHHHHHhCCCC-----CCccc-----cc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV-SKDLQLEKIQETIGKKIGLYT-----DSWKD-----KR 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~-----~~~~~-----~~ 138 (791)
....++|+|..|+|||||++.++... .. +..++.-+ .......+..+.....-++.- ..... ..
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT---TA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---CC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 44688999999999999999998765 22 22233333 334455565555554433210 00011 01
Q ss_pred HHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 139 LEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 139 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.....-.+.+++ +++.+|+++|++-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 112233333444 57899999999843
No 428
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.52 E-value=0.035 Score=56.18 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=41.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
+..+++.|+|.+|+|||+++.+++... ......++|++.... .+.+.+...+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 467899999999999999999999887 445788999987664 4455555443 44
No 429
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.52 E-value=0.14 Score=52.54 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFV 96 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~ 96 (791)
...++++.|+.|.|||||.+.++....
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 347999999999999999999988763
No 430
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.49 E-value=0.018 Score=54.70 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=30.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
.++++|+|++|+|||||+++++... ...|..++..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999987 567765555553
No 431
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.49 E-value=0.02 Score=58.80 Aligned_cols=49 Identities=27% Similarity=0.324 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
.+++.+.|.|||||||+|.+.+-... .....++-++.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 47999999999999999999877763 22244888887777776666554
No 432
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.49 E-value=0.072 Score=57.00 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=51.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCCC----ccccc------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYTDS----WKDKR------ 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~------ 138 (791)
+...++|+|..|+|||||++.++... . .+.+++.-+.. .....+..++.+..-++.-.. ..+..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~-~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----D-ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----C-CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 45789999999999999999998765 1 23444554443 334445554443332221000 01111
Q ss_pred HHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 139 LEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 139 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.....-.+.+++ +++.+|+++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 122233344444 47899999999943
No 433
>PTZ00301 uridine kinase; Provisional
Probab=95.48 E-value=0.012 Score=56.85 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|++|+||||+|+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 434
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.48 E-value=0.038 Score=57.26 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 038105 74 IGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+++.|+.|+||||+++.+++.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999887
No 435
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.45 E-value=0.015 Score=56.91 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 436
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.45 E-value=0.03 Score=66.40 Aligned_cols=198 Identities=17% Similarity=0.127 Sum_probs=105.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CCCEEEEEEeCC----ccCHH--HHHHHHHHHhCCCCCCcccccHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSK----DLQLE--KIQETIGKKIGLYTDSWKDKRLEEKA 143 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~----~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~ 143 (791)
..-+.|+|..|.||||+...++-....... .-+..+++.+.. ..... .+..-+...+... ....+..
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~------~~~~~~~ 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ------GIAKQLI 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc------CCcchhh
Confidence 347899999999999999998776643221 122344443321 11111 2222333332211 1122233
Q ss_pred HHHHHHhCCceEEEEEcCccCccc------ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceEEeccCChHHHH
Q 038105 144 QDIFKTLSKKKFALLLDDLWERVD------LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMFKVACLSDEDAW 217 (791)
Q Consensus 144 ~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~~l~~l~~~e~~ 217 (791)
....+.+..+++++.+|+++.... ...+...++. -+.+++|+|+|....-........+++..+.++...
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 333678899999999999976511 2223333333 346889999996555443344556777777777665
Q ss_pred HHHHHH-----hCccccCCCCC---hHH----HHHHHHHHcCCCchHHHHHHHHhhcC-----CCHHHHHHHHHHHhh
Q 038105 218 ELFREK-----VGEETIESHHS---IPE----LAQTVAKECDGLPLALITIGRAMAYK-----KTPEEWRYAIEVLRR 278 (791)
Q Consensus 218 ~l~~~~-----~~~~~~~~~~~---~~~----~~~~i~~~~~g~Plal~~~~~~l~~~-----~~~~~w~~~l~~l~~ 278 (791)
+..... ........... +.. ....-+......|+.|.+.+...... ...+-|+.+++.+-.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 372 QFILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 444421 11111001000 000 11222333488899998888555421 355666666655443
No 437
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.43 E-value=0.022 Score=54.13 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT 131 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 131 (791)
.|+|+|-||+||||+|..++.++. ..+-..++-|++..+.+ +..++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~--~~~~~~VLvVDaDpd~n-------L~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL--SKGGYNVLVVDADPDSN-------LPEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH--hcCCceEEEEeCCCCCC-------hHHhcCCCC
Confidence 589999999999999999766662 22224577788777654 345566554
No 438
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.42 E-value=0.042 Score=61.97 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=36.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
.++..|.|.+|.||||+++++...+.+....-...+.+...+..-...+.+.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 3699999999999999999987765221111124566666665555555555544
No 439
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.41 E-value=0.49 Score=48.00 Aligned_cols=149 Identities=8% Similarity=0.028 Sum_probs=73.9
Q ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC-CCCC--EEE----EEEeCCccCHHHHHHHHHHHhC
Q 038105 56 SQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-TDFD--YVI----WVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 56 ~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-~~f~--~~~----wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++.+...+..+.-.+...++| |+||+++|+.++..+--.. .... +.| .+..+..+++..+
T Consensus 9 ~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i--------- 77 (290)
T PRK07276 9 KVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI--------- 77 (290)
T ss_pred HHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeee---------
Confidence 44556666666663456677777 5899999999887641100 0000 000 0000111111100
Q ss_pred CCCCCcccccHHHHHHHHHHHhC-----CceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHH-HHhh-
Q 038105 129 LYTDSWKDKRLEEKAQDIFKTLS-----KKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCGR- 199 (791)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~~- 199 (791)
. +.......++.+ .+.+.+. +++=++|||+++.+. ....+...+.. .+.++.+|++|.+.. +...
T Consensus 78 -~-p~~~~I~idqIR-~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE---Pp~~t~~iL~t~~~~~lLpTI 151 (290)
T PRK07276 78 -E-PQGQVIKTDTIR-ELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE---PQSEIYIFLLTNDENKVLPTI 151 (290)
T ss_pred -c-CCCCcCCHHHHH-HHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC---CCCCeEEEEEECChhhCchHH
Confidence 0 000111233333 2333332 345689999998763 34445555554 455566777665542 3222
Q ss_pred ccccceEEeccCChHHHHHHHHH
Q 038105 200 MEDRRMFKVACLSDEDAWELFRE 222 (791)
Q Consensus 200 ~~~~~~~~l~~l~~~e~~~l~~~ 222 (791)
.+....+.+.+ +.++..+.+.+
T Consensus 152 ~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 152 KSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred HHcceeeeCCC-cHHHHHHHHHH
Confidence 23345677766 66666666643
No 440
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.09 Score=60.73 Aligned_cols=104 Identities=15% Similarity=0.256 Sum_probs=68.9
Q ss_pred CCcccchHHHHHHHHHHhccC-----C--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE-----P--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 120 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~-----~--~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 120 (791)
...++|-++.+..+.+.+... . ..-+..+.|+.|+|||.||++++..+ .+..+..+-++.+....
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e----- 632 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE----- 632 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-----
Confidence 345788888888888888642 1 45678899999999999999999987 56666666666554321
Q ss_pred HHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceE-EEEEcCccCc
Q 038105 121 ETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKF-ALLLDDLWER 165 (791)
Q Consensus 121 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~ 165 (791)
+.+..+.+. .+. -.+....+.+.++.+|+ .|.||||+..
T Consensus 633 --vskligsp~-gyv---G~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 --VSKLIGSPP-GYV---GKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred --hhhccCCCc-ccc---cchhHHHHHHHHhcCCceEEEEechhhc
Confidence 323323221 111 12234467777777774 7779999743
No 441
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.39 E-value=0.094 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.+|+|.|+.|+||||+|+.+...+
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998886655
No 442
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.39 E-value=0.065 Score=62.45 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
+.++++|+|+.|.||||+.+.++-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3479999999999999999998655
No 443
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.39 E-value=0.059 Score=57.58 Aligned_cols=91 Identities=23% Similarity=0.250 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC----ccccc------H
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS----WKDKR------L 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~------~ 139 (791)
....++|+|.+|+|||||++.++... .....++...........++.++.+..-++.-.. ..+.. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~----~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT----DADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC----CCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999999888764 2223344444444445555655544432221100 00111 1
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 140 EEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 140 ~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
....-.+.+++ +++.+|+++||+-.
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233344554 46899999999954
No 444
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.38 E-value=0.031 Score=52.44 Aligned_cols=49 Identities=29% Similarity=0.415 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
..+|+|-||-|+||||||+.+++++ . +. +++=.+...+-++..++++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l---~--~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL---G--FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh---C--Cc-eeeecccCChHHHHHHHhHHH
Confidence 5799999999999999999999998 2 22 233334455555555555544
No 445
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.34 E-value=0.078 Score=56.97 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=54.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC----ccccc------H
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS----WKDKR------L 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~------~ 139 (791)
+...++|.|..|+|||||++.++... . .-..+++..........+..+.+...-++.... ..+.+ .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~---~-~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT---Q-CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---C-CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999998765 1 123455555555556666666665443221100 00111 1
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 140 EEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 140 ~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
....-.+.+++ +++.+|+++|++-.
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 12233344444 46899999999954
No 446
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.32 E-value=0.046 Score=49.82 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|.|+|.+|+||||+|+.+...+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998876
No 447
>PF13245 AAA_19: Part of AAA domain
Probab=95.31 E-value=0.028 Score=44.15 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCCCEEEEEEe
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVD-NPTDFDYVIWVVV 110 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~ 110 (791)
.+++.|.|++|.|||+++.+.+..+.. .......++.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 478889999999999665555444422 1222345555543
No 448
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.032 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+|.++|.+|.||||+|.++...+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999988
No 449
>PLN02165 adenylate isopentenyltransferase
Probab=95.30 E-value=0.019 Score=58.81 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||+||..++..+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 55699999999999999999999886
No 450
>PRK15453 phosphoribulokinase; Provisional
Probab=95.30 E-value=0.08 Score=52.73 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+|+|.|.+|+||||+|+++++.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998876
No 451
>PRK05922 type III secretion system ATPase; Validated
Probab=95.29 E-value=0.094 Score=56.08 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc----ccc------cH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW----KDK------RL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~------~~ 139 (791)
+...++|+|+.|+|||||++.++... .....++-..........+.+.+...........+ .+. ..
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 44679999999999999999998764 22222322222233334455555443332211000 011 11
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 140 EEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 140 ~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
....-.+.+++ +++.+|+++|++-.
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 22333444554 47899999999954
No 452
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.28 E-value=0.02 Score=53.95 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|++|+||||+|+.++..+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 453
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.28 E-value=0.039 Score=60.95 Aligned_cols=135 Identities=19% Similarity=0.145 Sum_probs=76.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-----CCEEEEEEeCC-----ccC------------HHHHHHHHHHHh
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD-----FDYVIWVVVSK-----DLQ------------LEKIQETIGKKI 127 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~-----f~~~~wv~~~~-----~~~------------~~~~~~~i~~~l 127 (791)
....|+|+|+.|+|||||.+.+........+. .-.+.|++-.. ..+ .+.-.+..+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 44689999999999999999997665322221 11233333111 001 134445555555
Q ss_pred CCCCCCc----ccccHHH-HHHHHHHHhCCceEEEEEcCccCccc---ccccccCCCCCCCCCCCcEEEEEcCcHHHHhh
Q 038105 128 GLYTDSW----KDKRLEE-KAQDIFKTLSKKKFALLLDDLWERVD---LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGR 199 (791)
Q Consensus 128 ~~~~~~~----~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~ 199 (791)
+.+.+.. ..-+-.| ..-.+...+-.++-+||||+.-+--+ .+.+..++..+ ...||+.|.|+...+.
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-----EGTVLLVSHDRYFLDR 501 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHh
Confidence 5543321 1112222 23344445567889999999965433 33444445442 3458999999988776
Q ss_pred ccccceEEecc
Q 038105 200 MEDRRMFKVAC 210 (791)
Q Consensus 200 ~~~~~~~~l~~ 210 (791)
.. ..++.+++
T Consensus 502 va-~~i~~~~~ 511 (530)
T COG0488 502 VA-TRIWLVED 511 (530)
T ss_pred hc-ceEEEEcC
Confidence 65 34555553
No 454
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.27 E-value=0.015 Score=55.66 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998765
No 455
>PRK06217 hypothetical protein; Validated
Probab=95.27 E-value=0.033 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..|+|.|.+|+||||+|++++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999886
No 456
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.27 E-value=0.076 Score=55.00 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 44799999999999999999998765
No 457
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.26 E-value=0.016 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|.|+|++|+||||+|+++++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999987
No 458
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.26 E-value=0.028 Score=51.11 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 57 QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 57 ~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+++|.+.+.+ +++++.|.+|+|||||+..+....
T Consensus 25 g~~~l~~~l~~----k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG----KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT----SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC----CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45566666664 699999999999999999998764
No 459
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.25 E-value=0.023 Score=57.03 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|.++|.+|+||||+|++++..+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999887
No 460
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.24 E-value=0.062 Score=50.38 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=29.3
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
..++|-...++.+.-.+ +...|.++.||+|+||||+.+.+-.
T Consensus 14 ~~yYg~~~aL~~i~l~i---~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 14 NLYYGDKHALKDINLDI---PKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eEEECchhhhccCceec---cCCceEEEECCCCcCHHHHHHHHHh
Confidence 34677444444333323 3458999999999999999998844
No 461
>PRK08149 ATP synthase SpaL; Validated
Probab=95.23 E-value=0.092 Score=56.11 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=52.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC-CccCHHHHHHHHHHHhCCC-------CCCcc---ccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS-KDLQLEKIQETIGKKIGLY-------TDSWK---DKR 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~---~~~ 138 (791)
+...++|+|.+|+|||||+..++... ..+.+++..+. ......++..+........ ..+.. ...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45789999999999999999998754 12333333333 2334556666665543221 10000 011
Q ss_pred HHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 139 LEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 139 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.......+.+++ +++.+|+++|++-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 122333344444 47899999999954
No 462
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.23 E-value=0.064 Score=49.94 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCccccc-HHHHHHHHHHHh
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKR-LEEKAQDIFKTL 150 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l 150 (791)
..+.|.|.+|+||||+|.+++... .. .++++.-.. ...++..+.+..+.......|..-. ..++...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~---~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GL---QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CC---CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998775 11 234444333 2334555566554433232222111 112333333323
Q ss_pred CCceEEEEEcCcc
Q 038105 151 SKKKFALLLDDLW 163 (791)
Q Consensus 151 ~~~~~LlVlDdv~ 163 (791)
.+ .-++++|.+.
T Consensus 75 ~~-~~~VlID~Lt 86 (170)
T PRK05800 75 AP-GRCVLVDCLT 86 (170)
T ss_pred CC-CCEEEehhHH
Confidence 33 3378999983
No 463
>PRK03839 putative kinase; Provisional
Probab=95.22 E-value=0.015 Score=55.18 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|.|.|+.|+||||+|+++++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.21 E-value=0.025 Score=59.63 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...+.|.|+.|+||||+++.+...+ .......++.- .... +........... ..+ .........+.+...+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~ti-Edp~--E~~~~~~~~~i~-q~e--vg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITI-EDPI--EYVHRNKRSLIN-QRE--VGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEE-cCCh--hhhccCccceEE-ccc--cCCCCcCHHHHHHHhh
Confidence 4789999999999999999998876 22233333332 2221 111100000000 000 0111123455677788
Q ss_pred CCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCc
Q 038105 151 SKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
+..+=.|++|++.+.......... ...|..|+.|...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~a------a~tGh~v~~T~Ha 229 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTA------AETGHLVFGTLHT 229 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH------HHcCCcEEEEEcC
Confidence 899999999999765544432111 2234446666654
No 465
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.21 E-value=0.027 Score=53.96 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|.+|+|||||++.++.-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45799999999999999999997654
No 466
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.20 E-value=0.076 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|+|.|++|+||||+|+.++..+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 467
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.19 E-value=0.036 Score=54.76 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=41.1
Q ss_pred HHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 58 LEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 58 ~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
-.+++..+.. .+...+|+|+|.+|+|||||.-++...+ ...++--.|+-|+.+..++-
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TG 95 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTG 95 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCC
Confidence 3455555554 3567899999999999999999998888 22333346666666665543
No 468
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.19 E-value=0.029 Score=52.09 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 51 VVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+||.+..++++.+.+.. .....-|.|+|..|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887765 1234677799999999999999998864
No 469
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.19 E-value=0.083 Score=59.25 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=60.4
Q ss_pred HHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---
Q 038105 58 LEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS--- 133 (791)
Q Consensus 58 ~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 133 (791)
+..+-+.|..+ +...++.|.|..|+|||++|.+++... ......++|++.... .+++.+.. ..++.....
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~---~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~ 332 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAA---CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEE 332 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhh
Confidence 34444555433 346799999999999999999998775 234567889887654 44444443 344432110
Q ss_pred ----------cccccHHHHHHHHHHHhCC-ceEEEEEcCcc
Q 038105 134 ----------WKDKRLEEKAQDIFKTLSK-KKFALLLDDLW 163 (791)
Q Consensus 134 ----------~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 163 (791)
......++....+.+.+.. +.-++|+|.+.
T Consensus 333 ~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 333 KGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred cCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 0112234455555555433 44578888884
No 470
>PRK04040 adenylate kinase; Provisional
Probab=95.18 E-value=0.017 Score=54.92 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|+|+.|+||||+++.++..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 471
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.18 E-value=0.069 Score=58.00 Aligned_cols=60 Identities=23% Similarity=0.302 Sum_probs=38.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLY 130 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 130 (791)
+.++++++|+.|+||||++.+++..+.... ....+..++.... ....+-+...++.++++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 347999999999999999999998762211 2224556665442 23344455556666554
No 472
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.029 Score=50.29 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=28.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEE
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 109 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 109 (791)
...+|+++|++|+||||+.+.+|.++... .+.+|+.
T Consensus 36 aGECvvL~G~SG~GKStllr~LYaNY~~d----~G~I~v~ 71 (235)
T COG4778 36 AGECVVLHGPSGSGKSTLLRSLYANYLPD----EGQILVR 71 (235)
T ss_pred CccEEEeeCCCCCcHHHHHHHHHhccCCC----CceEEEE
Confidence 34689999999999999999999988322 3456654
No 473
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.15 E-value=0.032 Score=58.63 Aligned_cols=63 Identities=27% Similarity=0.338 Sum_probs=47.4
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
...++|+++.+..+...+..+ +.+.+.|+.|+|||++|+.++... ... ..++.+.......++
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~---~~vll~G~PG~gKT~la~~lA~~l---~~~---~~~i~~t~~l~p~d~ 85 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAG---GHVLLEGPPGVGKTLLARALARAL---GLP---FVRIQCTPDLLPSDL 85 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcC---CCEEEECCCCccHHHHHHHHHHHh---CCC---eEEEecCCCCCHHHh
Confidence 344899999999998888876 789999999999999999999987 323 344555544444333
No 474
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=95.12 E-value=0.054 Score=57.83 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCceEEEEEcCccCccccccc---ccCCCCCCCCCCCcEEEEEcCcHHHHhhccc
Q 038105 142 KAQDIFKTLSKKKFALLLDDLWERVDLKKV---GVPLPSRSNSPKNSAVVFTTRFVDVCGRMED 202 (791)
Q Consensus 142 ~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~---~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~ 202 (791)
++..+.+.|=.+|.|+.||+.-+--+++++ ..++.. ...+ .++|++|+++......+
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCc-eEEEEecchhhhhhHhh
Confidence 455555666678999999999765555443 233433 2222 68999998877665544
No 475
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.076 Score=50.23 Aligned_cols=123 Identities=19% Similarity=0.129 Sum_probs=66.8
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC--EEEEEEeCCccC---HHHHHHHHHHHhCCCCCCcc
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKDLQ---LEKIQETIGKKIGLYTDSWK 135 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~ 135 (791)
++..+... +---..|.|++|+||||+.+.++.-.......|. .++-++-+.... ...-+..+..++.+...
T Consensus 128 li~~ly~~-g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~--- 203 (308)
T COG3854 128 LIKDLYQN-GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDP--- 203 (308)
T ss_pred HHHHHHhc-CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhccc---
Confidence 45555444 3344789999999999999999887754444454 344444222100 00011122222221110
Q ss_pred cccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 136 DKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
....+.+...++ +-.|=.+|+|++-...+..++...+ ..|.+++.|..-..+
T Consensus 204 cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~------~~GVkli~TaHG~~i 255 (308)
T COG3854 204 CPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTAL------HAGVKLITTAHGNGI 255 (308)
T ss_pred chHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHH------hcCcEEEEeeccccH
Confidence 011122222222 2357789999998777766665554 448888888875444
No 476
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.11 E-value=0.026 Score=54.36 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|++|+||||+|+.+...+
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999876
No 477
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.09 E-value=0.097 Score=55.99 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC-------CCcc---cccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT-------DSWK---DKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~---~~~~ 139 (791)
....++|+|..|+|||||+..++... + ....++.+.........+.++..+..-++.. .+.. ....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~---~-~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNA---K-ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC---C-CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 45688999999999999999998865 2 2223444433344566666665554433211 0000 0112
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCccCc
Q 038105 140 EEKAQDIFKTL--SKKKFALLLDDLWER 165 (791)
Q Consensus 140 ~~~~~~l~~~l--~~~~~LlVlDdv~~~ 165 (791)
......+.+++ +++++|+++|++-..
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 22333444444 468999999999554
No 478
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.05 E-value=0.034 Score=56.87 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=42.2
Q ss_pred CCcccchHHHHHHHHHHhcc-----CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ-----EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~-----~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.++.++++++.+.. +.+.+++.+.||-|.||||||+.+.+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999998864 2467899999999999999999998776
No 479
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.04 E-value=0.081 Score=50.97 Aligned_cols=118 Identities=19% Similarity=0.157 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCccc-----ccHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVD-NPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKD-----KRLEEKA 143 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~ 143 (791)
..+++.|.|+.|.||||+++.++.-... ..+. ++++.. .. -.+.+.+...++........ ....+ .
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~-----~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~-~ 99 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC-----FVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSE-T 99 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC-----Ccchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHH-H
Confidence 3489999999999999999988532100 0111 121111 00 12223333333322100000 01111 2
Q ss_pred HHHHHHhCCceEEEEEcCccCcccc-------cccccCCCCCCCCCCCcEEEEEcCcHHHHhhcc
Q 038105 144 QDIFKTLSKKKFALLLDDLWERVDL-------KKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRME 201 (791)
Q Consensus 144 ~~l~~~l~~~~~LlVlDdv~~~~~~-------~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~ 201 (791)
..+.+ +..++-|+++|+.....+. ..+...+. ..+..+|++|.+.+.+....
T Consensus 100 ~~il~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~-----~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 100 AYILD-YADGDSLVLIDELGRGTSSADGFAISLAILECLI-----KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHH-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH-----hcCCEEEEECChHHHHHHhh
Confidence 22222 2356789999998443221 12222222 23788999999888866543
No 480
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.02 E-value=0.22 Score=51.64 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999998865
No 481
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.01 E-value=0.2 Score=45.85 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=27.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEE
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVV 109 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~ 109 (791)
...+|+|.|++|.|||||..-++--. ..-.+.+|++
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~----~P~~G~i~i~ 59 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE----TPASGEILIN 59 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc----CCCCceEEEc
Confidence 45789999999999999999998754 2233456664
No 482
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.01 E-value=0.11 Score=51.76 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCCCEE-EEEEeCCc-cCHHHHHHHHHHHhCCCCCC----cccccHH--
Q 038105 70 AAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDYV-IWVVVSKD-LQLEKIQETIGKKIGLYTDS----WKDKRLE-- 140 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~-- 140 (791)
+...++|+|..|+|||+|| ..+++.. .-+.+ +++-+... ....++.+++...-...-.. ..+....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4568999999999999996 5555432 22333 55555443 45667777666442211000 0011111
Q ss_pred ----HHHHHHHHHh--CCceEEEEEcCccCc
Q 038105 141 ----EKAQDIFKTL--SKKKFALLLDDLWER 165 (791)
Q Consensus 141 ----~~~~~l~~~l--~~~~~LlVlDdv~~~ 165 (791)
...-.+.+++ +++.+|+++||+-..
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 1122233333 478999999999543
No 483
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.98 E-value=0.016 Score=55.09 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|.|+|++|+||||+|+.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999876
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.97 E-value=0.02 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+++|+|++|+||||+++.++..+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 485
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.97 E-value=0.021 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|.+.|++|+||||+|+++....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998875
No 486
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.96 E-value=0.066 Score=52.20 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
..+++.|.|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999999866
No 487
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.96 E-value=0.024 Score=50.82 Aligned_cols=22 Identities=50% Similarity=0.753 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 038105 74 IGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|+|+.|+|||||++.++..+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999876
No 488
>PRK00625 shikimate kinase; Provisional
Probab=94.95 E-value=0.019 Score=53.57 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|.|+|+.|+||||+++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999886
No 489
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.95 E-value=0.031 Score=58.81 Aligned_cols=74 Identities=18% Similarity=0.250 Sum_probs=46.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCC---CCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPT---DFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 146 (791)
..+-+.|||.-|.|||.|+-.+|+.....++ +|+. -..++.+.+-+.-+ ....+..+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~----------Fm~~vh~~l~~~~~----------~~~~l~~v 120 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHE----------FMLDVHSRLHQLRG----------QDDPLPQV 120 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccH----------HHHHHHHHHHHHhC----------CCccHHHH
Confidence 5789999999999999999999998743111 1210 12233333322221 11123445
Q ss_pred HHHhCCceEEEEEcCcc
Q 038105 147 FKTLSKKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~~~~~LlVlDdv~ 163 (791)
.+.+.++..||.||++.
T Consensus 121 a~~l~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQ 137 (362)
T ss_pred HHHHHhcCCEEEEeeee
Confidence 55667777899999994
No 490
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.95 E-value=0.03 Score=50.20 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
++|.|+|+.|+|||||++.+.+.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5899999999999999999999883 24555554555443
No 491
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=94.94 E-value=0.014 Score=59.97 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=79.9
Q ss_pred ccchHHHHHHHHHHhccC----------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CC---CEEEEEE-
Q 038105 51 VVGLQSQLEQVWRCLVQE----------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DF---DYVIWVV- 109 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~----------------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~f---~~~~wv~- 109 (791)
..|-..++.++.+.+-.. ....+++|+|.+|.||||+.+.+......... .| .+.+-+.
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 455566777777776320 23468999999999999999998765411111 01 1111111
Q ss_pred --------eC--CccCHHHHHH-------------HHHHHhCCCCCCc------ccccHHHHHHHHHHHhCCceEEEEEc
Q 038105 110 --------VS--KDLQLEKIQE-------------TIGKKIGLYTDSW------KDKRLEEKAQDIFKTLSKKKFALLLD 160 (791)
Q Consensus 110 --------~~--~~~~~~~~~~-------------~i~~~l~~~~~~~------~~~~~~~~~~~l~~~l~~~~~LlVlD 160 (791)
.. ..++-..+++ +++.+.++..... +-..-+.-...+...++.++-++++|
T Consensus 453 nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cchhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 11 1111112333 3334444332211 11122334566777788898999999
Q ss_pred CccCccc-------ccccccCCCCCCCCCCCcEEEEEcCcHHHHhhccccceE
Q 038105 161 DLWERVD-------LKKVGVPLPSRSNSPKNSAVVFTTRFVDVCGRMEDRRMF 206 (791)
Q Consensus 161 dv~~~~~-------~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~~~~~~~~~ 206 (791)
.+...-| ...+...- ..-|+.+++.|+.+++.+.+.++..+
T Consensus 533 EF~AhLD~~TA~rVArkisela-----Re~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELA-----REAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHH-----HHhCCeEEEEecCHHHHhccCCceeE
Confidence 9954311 11111111 12356677766668887777666543
No 492
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.1 Score=58.96 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++...
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44789999999999999999998865
No 493
>PRK13768 GTPase; Provisional
Probab=94.94 E-value=0.03 Score=56.12 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
..+++|.|++|+||||++..++..+. .....++.++..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~---~~g~~v~~i~~D 39 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLE---EQGYDVAIVNLD 39 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHH---hcCCceEEEECC
Confidence 36889999999999999999988772 233455666543
No 494
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.93 E-value=0.1 Score=59.88 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFV 96 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~ 96 (791)
+...++|+|.+|.|||||++.+...+.
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 457899999999999999999987763
No 495
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.92 E-value=0.047 Score=63.65 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=44.5
Q ss_pred CcccchHHHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 49 PTVVGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
..++|+...+.++.+.+..- .....|.|+|..|+|||++|+.+.+.-. ......+.+++...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~---r~~~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG---RNNRRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC---CCCCCeEEEecccC
Confidence 35899999888888776641 2346899999999999999999977642 12234455666543
No 496
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.91 E-value=0.12 Score=55.77 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=50.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHh------CC-CCCC---cccccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKI------GL-YTDS---WKDKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l------~~-~~~~---~~~~~~ 139 (791)
....++|+|..|+|||||++.++... .....++++.........++.++....- .. ...+ ......
T Consensus 157 ~Gq~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 157 KGQRVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 55799999999999999999888765 2223455554444444554443322111 11 1100 000111
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCcc
Q 038105 140 EEKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 140 ~~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
....-.+.+++ +++.+|+++|++-
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dslt 258 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVT 258 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChH
Confidence 22333344444 4789999999994
No 497
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.90 E-value=0.075 Score=59.60 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=59.5
Q ss_pred HHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc----
Q 038105 60 QVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---- 134 (791)
Q Consensus 60 ~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---- 134 (791)
.|-+.|..+ +...++.|.|.+|+|||++|.+++.... ...-..++|++.... .+++.+.+.. ++......
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~~~~~~g 93 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEES--PEDIIRNVAS-FGWDLQKLIDEG 93 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccCC--HHHHHHHHHH-cCCCHHHHhhCC
Confidence 344445443 4568999999999999999999977642 222467889887664 4444444432 33321000
Q ss_pred -----------------ccccHHHHHHHHHHHhCC-ceEEEEEcCccC
Q 038105 135 -----------------KDKRLEEKAQDIFKTLSK-KKFALLLDDLWE 164 (791)
Q Consensus 135 -----------------~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~ 164 (791)
...+.+.....+.+.... +.-.+|+|.+..
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 94 KLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred eEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 011234445555555432 456799999953
No 498
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.89 E-value=0.025 Score=53.61 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+.++++|+|++|+|||||++++....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46899999999999999999998765
No 499
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.88 E-value=0.1 Score=55.92 Aligned_cols=90 Identities=21% Similarity=0.223 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe-CCccCHHHHHHHHHHHhCCCCC--C--ccccc------
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV-SKDLQLEKIQETIGKKIGLYTD--S--WKDKR------ 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~--~--~~~~~------ 138 (791)
....++|+|.+|+|||||++.++... . .+..+++-+ .....+.+.+++....-..... . ..+..
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~---~--~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP---D--ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC---C--CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 45789999999999999999988754 2 222334333 3344455555554322111000 0 00111
Q ss_pred HHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 139 LEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 139 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.....-.+.+++ +++.+|+++||+-.
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 111233344444 46889999999954
No 500
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.13 Score=55.32 Aligned_cols=90 Identities=23% Similarity=0.279 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCC--------CCc--cccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYT--------DSW--KDKR 138 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~--------~~~--~~~~ 138 (791)
....++|+|..|+|||||++.++... . .+.+++..+.. .....++.+.+...-++.- +.. ....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~----~-~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT----E-ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----C-CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 44689999999999999999997654 1 23333333332 3345555555554433210 000 0011
Q ss_pred HHHHHHHHHHHh--CCceEEEEEcCccC
Q 038105 139 LEEKAQDIFKTL--SKKKFALLLDDLWE 164 (791)
Q Consensus 139 ~~~~~~~l~~~l--~~~~~LlVlDdv~~ 164 (791)
.....-.+.+++ +++.+|+++|++-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 112233344444 57899999999954
Done!