Query 038105
Match_columns 791
No_of_seqs 351 out of 3949
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 12:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.3E-41 3.2E-45 375.0 22.6 315 46-385 125-470 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-35 5.2E-40 334.3 17.4 286 50-379 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-33 6.1E-38 351.4 28.9 313 46-385 121-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 8.2E-32 2.8E-36 307.6 24.9 309 46-383 121-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 1E-23 3.5E-28 242.0 21.5 151 392-545 14-168 (606)
6 3t6q_A CD180 antigen; protein- 99.9 1.2E-23 4.2E-28 241.4 20.8 170 393-576 16-191 (606)
7 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-23 5E-28 229.9 20.4 344 391-786 44-392 (457)
8 3rgz_A Protein brassinosteroid 99.9 2.7E-24 9.3E-29 252.6 14.5 149 393-543 204-356 (768)
9 2z81_A CD282 antigen, TOLL-lik 99.9 8.6E-24 2.9E-28 239.7 17.4 149 393-544 9-162 (549)
10 4ecn_A Leucine-rich repeat pro 99.9 1.5E-24 5.1E-29 252.6 11.2 167 400-580 436-635 (876)
11 2id5_A Lingo-1, leucine rich r 99.9 4.6E-23 1.6E-27 229.1 21.9 299 392-756 14-332 (477)
12 4fmz_A Internalin; leucine ric 99.9 2.3E-23 7.9E-28 221.4 18.6 234 410-682 42-275 (347)
13 4eco_A Uncharacterized protein 99.9 8.6E-25 2.9E-29 250.7 6.5 220 400-635 194-452 (636)
14 3rgz_A Protein brassinosteroid 99.9 1.7E-23 5.8E-28 245.8 15.8 352 410-785 267-721 (768)
15 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-23 4E-28 230.7 13.4 317 406-782 36-353 (457)
16 3vq2_A TLR4, TOLL-like recepto 99.9 7.4E-23 2.5E-27 234.9 20.5 152 391-544 34-195 (606)
17 3t6q_A CD180 antigen; protein- 99.9 3.9E-23 1.3E-27 237.2 16.4 153 391-545 35-194 (606)
18 2z63_A TOLL-like receptor 4, v 99.9 5.5E-23 1.9E-27 234.3 17.4 148 394-543 33-190 (570)
19 4fmz_A Internalin; leucine ric 99.9 3.3E-22 1.1E-26 212.4 22.0 300 391-756 46-345 (347)
20 2z63_A TOLL-like receptor 4, v 99.9 4.8E-23 1.6E-27 234.8 15.5 151 392-545 10-164 (570)
21 3v47_A TOLL-like receptor 5B a 99.9 2.7E-23 9.2E-28 229.7 12.8 175 392-579 13-195 (455)
22 2z7x_B TOLL-like receptor 1, v 99.9 7.9E-23 2.7E-27 230.0 16.5 143 391-542 2-150 (520)
23 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-22 6.6E-27 234.7 19.5 173 392-578 7-185 (680)
24 3o6n_A APL1; leucine-rich repe 99.9 1.4E-22 4.7E-27 218.9 16.7 281 410-743 43-328 (390)
25 1o6v_A Internalin A; bacterial 99.9 5.9E-22 2E-26 219.1 21.5 318 392-758 49-389 (466)
26 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-22 6.2E-27 234.9 17.3 287 391-682 27-363 (680)
27 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-22 4.6E-27 240.7 15.7 151 392-545 7-163 (844)
28 4ecn_A Leucine-rich repeat pro 99.9 1.1E-22 3.8E-27 236.9 14.3 319 391-743 450-816 (876)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-21 1.5E-25 217.5 26.3 142 392-542 34-181 (562)
30 2id5_A Lingo-1, leucine rich r 99.9 4.5E-22 1.6E-26 221.1 17.2 281 415-758 14-310 (477)
31 4eco_A Uncharacterized protein 99.9 2.4E-22 8.3E-27 230.4 15.0 319 391-743 208-576 (636)
32 3o6n_A APL1; leucine-rich repe 99.9 1.5E-21 5.1E-26 210.8 18.9 299 391-756 47-351 (390)
33 3oja_B Anopheles plasmodium-re 99.9 5.9E-22 2E-26 225.9 16.6 293 411-756 50-357 (597)
34 3j0a_A TOLL-like receptor 5; m 99.9 7.8E-22 2.7E-26 234.1 15.7 152 391-543 26-187 (844)
35 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-21 6.6E-26 218.6 17.9 145 415-576 3-150 (520)
36 1o6v_A Internalin A; bacterial 99.9 6E-21 2.1E-25 211.0 21.4 315 410-784 44-369 (466)
37 3v47_A TOLL-like receptor 5B a 99.9 1.9E-21 6.6E-26 214.8 17.1 339 391-757 32-408 (455)
38 2z81_A CD282 antigen, TOLL-lik 99.9 2.2E-21 7.6E-26 219.8 17.8 151 391-542 28-184 (549)
39 3oja_B Anopheles plasmodium-re 99.9 2.5E-21 8.4E-26 220.8 18.1 298 391-744 53-356 (597)
40 4fcg_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 201.4 14.9 199 434-683 81-288 (328)
41 2ft3_A Biglycan; proteoglycan, 99.8 7.5E-21 2.6E-25 200.3 16.9 271 412-720 33-305 (332)
42 4fcg_A Uncharacterized protein 99.8 2.2E-21 7.6E-26 203.3 12.4 206 392-637 84-299 (328)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-20 4.9E-25 213.3 19.0 148 411-576 30-181 (562)
44 2z80_A TOLL-like receptor 2, v 99.8 7.9E-21 2.7E-25 202.0 14.7 198 392-629 34-236 (353)
45 1xku_A Decorin; proteoglycan, 99.8 5.4E-20 1.9E-24 193.6 19.7 243 412-683 31-274 (330)
46 1ogq_A PGIP-2, polygalacturona 99.8 3.3E-21 1.1E-25 200.7 10.3 249 412-724 50-306 (313)
47 1ogq_A PGIP-2, polygalacturona 99.8 4.9E-21 1.7E-25 199.5 9.3 225 434-720 50-279 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 1E-19 3.4E-24 210.3 21.2 149 393-545 35-188 (635)
49 1jl5_A Outer protein YOPM; leu 99.8 9E-20 3.1E-24 199.6 19.2 199 391-629 73-271 (454)
50 3zyi_A Leucine-rich repeat-con 99.8 1.2E-19 4.3E-24 199.6 15.8 238 393-683 58-301 (452)
51 3zyj_A Leucine-rich repeat-con 99.8 1.4E-19 4.9E-24 198.4 16.0 238 393-683 47-290 (440)
52 2z80_A TOLL-like receptor 2, v 99.8 6.3E-19 2.2E-23 187.3 17.1 275 413-757 32-314 (353)
53 2ft3_A Biglycan; proteoglycan, 99.8 4.4E-19 1.5E-23 186.8 15.6 258 392-683 36-305 (332)
54 2z66_A Variable lymphocyte rec 99.8 2.7E-19 9.2E-24 186.2 13.8 240 393-683 11-259 (306)
55 4g8a_A TOLL-like receptor 4; l 99.8 7.2E-19 2.5E-23 203.1 18.7 127 391-518 54-186 (635)
56 1jl5_A Outer protein YOPM; leu 99.8 6.7E-20 2.3E-24 200.6 8.8 205 394-637 16-235 (454)
57 1xku_A Decorin; proteoglycan, 99.8 1.4E-18 4.7E-23 182.9 18.0 235 392-659 34-273 (330)
58 3g06_A SSPH2 (leucine-rich rep 99.8 4.7E-18 1.6E-22 191.6 22.9 154 391-578 42-195 (622)
59 2z66_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 181.6 13.0 176 415-629 10-189 (306)
60 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.5E-23 178.8 13.4 197 393-629 15-215 (285)
61 3zyi_A Leucine-rich repeat-con 99.8 2.4E-18 8.1E-23 189.3 15.6 243 413-720 55-301 (452)
62 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-18 1.4E-22 175.1 14.9 219 415-683 14-236 (285)
63 3zyj_A Leucine-rich repeat-con 99.8 3.7E-18 1.3E-22 187.1 15.3 243 413-720 44-290 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.7 9.2E-19 3.2E-23 182.8 7.6 264 410-747 32-300 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.7 5.2E-17 1.8E-21 183.1 22.3 255 412-743 40-294 (622)
66 2o6q_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 169.4 15.2 197 392-629 19-219 (270)
67 3rfs_A Internalin B, repeat mo 99.7 5.9E-18 2E-22 172.4 12.0 198 393-637 45-244 (272)
68 2z62_A TOLL-like receptor 4, v 99.7 2.9E-17 9.9E-22 167.9 15.3 176 393-578 11-191 (276)
69 1p9a_G Platelet glycoprotein I 99.7 1.9E-17 6.4E-22 170.0 11.9 200 408-659 6-205 (290)
70 1h6u_A Internalin H; cell adhe 99.7 3.5E-17 1.2E-21 169.8 12.9 191 408-659 37-227 (308)
71 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.4E-22 173.4 10.1 266 414-753 12-282 (317)
72 1wwl_A Monocyte differentiatio 99.7 1.9E-18 6.4E-23 180.0 2.8 248 410-719 41-306 (312)
73 3oja_A Leucine-rich immune mol 99.7 2.2E-17 7.7E-22 182.5 11.1 213 411-684 33-249 (487)
74 3rfs_A Internalin B, repeat mo 99.7 3.8E-17 1.3E-21 166.4 11.3 182 407-629 36-219 (272)
75 2qen_A Walker-type ATPase; unk 99.7 6.5E-16 2.2E-20 164.0 21.2 294 47-380 10-349 (350)
76 2z62_A TOLL-like receptor 4, v 99.7 6.2E-17 2.1E-21 165.4 11.9 199 391-629 30-238 (276)
77 1h6u_A Internalin H; cell adhe 99.7 1.3E-16 4.4E-21 165.5 14.2 189 391-629 43-231 (308)
78 2xwt_C Thyrotropin receptor; s 99.7 3.3E-17 1.1E-21 163.5 8.9 138 401-544 23-170 (239)
79 1p9a_G Platelet glycoprotein I 99.7 8.7E-17 3E-21 165.0 12.1 193 392-628 13-208 (290)
80 2o6q_A Variable lymphocyte rec 99.7 1.9E-16 6.6E-21 161.0 14.3 197 413-659 17-215 (270)
81 1z7x_W Ribonuclease inhibitor; 99.7 8.2E-18 2.8E-22 186.0 2.5 160 412-577 3-183 (461)
82 4ay9_X Follicle-stimulating ho 99.7 1.7E-16 5.9E-21 167.9 12.3 236 393-681 13-255 (350)
83 3m19_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 156.1 14.4 173 392-578 17-193 (251)
84 3m19_A Variable lymphocyte rec 99.7 3.6E-16 1.2E-20 157.2 13.1 179 412-629 14-193 (251)
85 1w5s_A Origin recognition comp 99.7 1.5E-15 5E-20 165.2 18.7 302 48-364 21-371 (412)
86 2fna_A Conserved hypothetical 99.7 4.8E-15 1.6E-19 157.7 22.4 293 47-378 11-355 (357)
87 1h6t_A Internalin B; cell adhe 99.7 3E-16 1E-20 161.2 12.3 174 407-629 41-214 (291)
88 2xwt_C Thyrotropin receptor; s 99.7 2.5E-16 8.4E-21 157.2 10.9 141 423-578 22-170 (239)
89 1z7x_W Ribonuclease inhibitor; 99.7 3E-17 1E-21 181.5 4.1 330 392-743 31-408 (461)
90 3oja_A Leucine-rich immune mol 99.6 2.1E-16 7.3E-21 174.6 10.2 212 391-661 36-249 (487)
91 3ogk_B Coronatine-insensitive 99.6 1.9E-16 6.5E-21 181.1 9.9 151 410-572 162-326 (592)
92 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.3E-20 146.8 12.7 155 408-578 40-195 (197)
93 1wwl_A Monocyte differentiatio 99.6 1.6E-16 5.5E-21 165.3 6.8 159 410-578 93-267 (312)
94 1m9s_A Internalin B; cell inva 99.6 1.6E-15 5.5E-20 170.8 12.0 173 408-629 39-211 (605)
95 2ast_B S-phase kinase-associat 99.6 6.2E-16 2.1E-20 163.1 7.6 105 434-540 70-178 (336)
96 2o6s_A Variable lymphocyte rec 99.6 2.2E-15 7.4E-20 146.7 10.5 175 416-637 11-187 (208)
97 2ast_B S-phase kinase-associat 99.6 8.4E-16 2.9E-20 162.1 8.1 228 412-688 70-308 (336)
98 2p1m_B Transport inhibitor res 99.6 5E-16 1.7E-20 177.7 6.4 153 410-574 154-324 (594)
99 4glp_A Monocyte differentiatio 99.6 1E-15 3.5E-20 159.1 7.5 84 458-542 91-181 (310)
100 2ca6_A RAN GTPase-activating p 99.6 5.6E-16 1.9E-20 166.7 5.3 168 403-576 23-228 (386)
101 4glp_A Monocyte differentiatio 99.6 1.6E-15 5.3E-20 157.7 8.3 130 414-544 93-238 (310)
102 2ca6_A RAN GTPase-activating p 99.6 6.8E-16 2.3E-20 166.0 5.5 237 430-720 28-314 (386)
103 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4E-19 153.8 14.2 237 437-742 12-255 (350)
104 2p1m_B Transport inhibitor res 99.6 1.9E-16 6.4E-21 181.2 -0.2 206 411-625 104-324 (594)
105 1h6t_A Internalin B; cell adhe 99.6 2.4E-14 8.4E-19 146.9 15.5 167 391-578 48-214 (291)
106 4ezg_A Putative uncharacterize 99.6 1.5E-14 5.1E-19 139.3 12.5 149 391-544 46-195 (197)
107 3ogk_B Coronatine-insensitive 99.6 4.2E-15 1.4E-19 169.8 10.1 308 409-748 189-527 (592)
108 3e6j_A Variable lymphocyte rec 99.6 2.6E-14 8.8E-19 141.1 14.1 146 394-543 24-172 (229)
109 1xeu_A Internalin C; cellular 99.6 1.3E-14 4.4E-19 146.5 11.9 158 399-578 29-186 (263)
110 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.6E-20 171.5 4.8 187 412-659 21-207 (605)
111 3cvr_A Invasion plasmid antige 99.5 7.8E-15 2.7E-19 163.2 10.0 193 391-638 61-253 (571)
112 3goz_A Leucine-rich repeat-con 99.5 1.2E-14 4.2E-19 154.6 10.8 137 434-577 22-180 (362)
113 1xeu_A Internalin C; cellular 99.5 2.4E-15 8.3E-20 151.8 4.9 170 410-629 17-186 (263)
114 2o6s_A Variable lymphocyte rec 99.5 1.6E-14 5.6E-19 140.4 10.5 164 393-577 11-178 (208)
115 2v9t_B SLIT homolog 2 protein 99.5 2.4E-14 8.4E-19 140.2 10.6 152 415-578 14-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.5 6.5E-14 2.2E-18 137.2 12.7 149 392-544 14-166 (220)
117 2xot_A Amphoterin-induced prot 99.5 3.2E-14 1.1E-18 151.1 11.1 174 392-579 21-204 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 6.6E-14 2.2E-18 137.2 11.3 151 415-578 14-167 (220)
119 2v1u_A Cell division control p 99.5 5.3E-13 1.8E-17 143.6 19.1 296 48-364 18-351 (387)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 5.9E-14 2E-18 137.5 10.5 150 392-544 14-167 (220)
121 3goz_A Leucine-rich repeat-con 99.5 4E-14 1.4E-18 150.6 9.0 134 438-578 2-152 (362)
122 2xot_A Amphoterin-induced prot 99.5 4.3E-14 1.5E-18 150.1 8.6 156 414-579 20-178 (361)
123 3e6j_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 135.9 11.6 152 413-578 20-173 (229)
124 2qby_B CDC6 homolog 3, cell di 99.5 2.6E-12 8.8E-17 138.0 21.8 294 48-364 19-339 (384)
125 2qby_A CDC6 homolog 1, cell di 99.5 6.7E-13 2.3E-17 142.7 16.9 296 48-363 19-347 (386)
126 3cvr_A Invasion plasmid antige 99.5 1.7E-13 5.9E-18 152.4 12.2 180 413-659 60-240 (571)
127 1fnn_A CDC6P, cell division co 99.4 3E-12 1E-16 137.7 21.0 298 48-364 16-351 (389)
128 2ell_A Acidic leucine-rich nuc 99.4 3.3E-13 1.1E-17 126.2 9.6 131 412-545 24-162 (168)
129 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 126.7 9.1 128 410-541 17-151 (176)
130 2je0_A Acidic leucine-rich nuc 99.4 7.6E-13 2.6E-17 120.9 9.5 125 411-538 16-148 (149)
131 4b8c_D Glucose-repressible alc 99.4 9.4E-14 3.2E-18 160.6 2.5 116 449-578 215-330 (727)
132 2ell_A Acidic leucine-rich nuc 99.4 3.1E-12 1.1E-16 119.5 11.9 132 390-523 25-164 (168)
133 1njg_A DNA polymerase III subu 99.3 1.1E-11 3.6E-16 124.1 15.7 198 49-260 23-231 (250)
134 1a9n_A U2A', U2A'; complex (nu 99.3 5.8E-13 2E-17 125.5 5.6 142 426-578 11-154 (176)
135 4b8c_D Glucose-repressible alc 99.3 5.8E-13 2E-17 154.0 3.7 111 430-544 220-330 (727)
136 1w8a_A SLIT protein; signaling 99.3 8.3E-12 2.9E-16 119.2 10.6 128 415-544 11-140 (192)
137 2je0_A Acidic leucine-rich nuc 99.3 1.2E-11 4.1E-16 112.9 11.2 124 390-514 18-149 (149)
138 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 115.6 12.2 128 414-544 9-138 (177)
139 1w8a_A SLIT protein; signaling 99.3 1.3E-11 4.6E-16 117.8 11.4 129 392-522 11-143 (192)
140 2chg_A Replication factor C sm 99.3 3.5E-11 1.2E-15 118.4 14.5 185 49-258 17-205 (226)
141 2wfh_A SLIT homolog 2 protein 99.3 2E-11 6.7E-16 116.6 12.2 125 415-543 13-139 (193)
142 2wfh_A SLIT homolog 2 protein 99.3 1.9E-11 6.6E-16 116.6 11.4 125 392-519 13-140 (193)
143 1ds9_A Outer arm dynein; leuci 99.2 7.2E-13 2.5E-17 127.5 -0.1 129 436-579 25-155 (198)
144 2o6r_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 111.3 12.1 127 393-522 11-141 (177)
145 1dce_A Protein (RAB geranylger 99.2 3.5E-11 1.2E-15 134.7 10.7 105 435-544 442-547 (567)
146 1dce_A Protein (RAB geranylger 99.2 6.6E-11 2.2E-15 132.4 11.4 121 413-537 442-567 (567)
147 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4E-17 126.0 -3.6 141 430-577 44-185 (198)
148 1sxj_B Activator 1 37 kDa subu 99.1 3.6E-10 1.2E-14 118.0 11.5 181 49-258 21-211 (323)
149 2r9u_A Variable lymphocyte rec 99.0 8.6E-10 3E-14 103.1 10.5 101 415-517 15-117 (174)
150 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 101.7 10.7 102 414-517 11-114 (170)
151 2r9u_A Variable lymphocyte rec 99.0 8.6E-10 2.9E-14 103.1 8.8 105 436-544 14-119 (174)
152 3te6_A Regulatory protein SIR3 99.0 1.8E-09 6.1E-14 109.6 11.5 173 49-226 20-213 (318)
153 3g39_A Variable lymphocyte rec 99.0 9.7E-10 3.3E-14 102.4 8.8 105 435-544 10-116 (170)
154 1hqc_A RUVB; extended AAA-ATPa 98.9 4.2E-09 1.4E-13 109.8 13.0 180 48-260 11-214 (324)
155 1iqp_A RFCS; clamp loader, ext 98.9 1.9E-09 6.5E-14 112.7 10.2 182 49-259 25-214 (327)
156 3sb4_A Hypothetical leucine ri 98.9 6.2E-10 2.1E-14 116.4 5.5 57 433-490 100-156 (329)
157 1jr3_A DNA polymerase III subu 98.9 9.3E-09 3.2E-13 109.6 14.7 195 49-257 16-221 (373)
158 3sb4_A Hypothetical leucine ri 98.9 2.7E-09 9.2E-14 111.5 7.8 171 411-622 100-328 (329)
159 2chq_A Replication factor C sm 98.8 1.4E-08 4.8E-13 105.6 12.1 180 49-257 17-204 (319)
160 3un9_A NLR family member X1; l 98.8 2.2E-09 7.4E-14 113.5 4.9 159 412-577 72-252 (372)
161 2ifg_A High affinity nerve gro 98.8 1.4E-08 4.7E-13 107.0 9.9 103 416-518 12-116 (347)
162 4fdw_A Leucine rich hypothetic 98.8 5.1E-08 1.8E-12 104.0 13.7 151 430-627 132-283 (401)
163 3un9_A NLR family member X1; l 98.8 8.5E-10 2.9E-14 116.6 -0.2 132 412-544 101-253 (372)
164 1jbk_A CLPB protein; beta barr 98.7 2.6E-08 8.9E-13 95.0 9.0 151 48-220 21-194 (195)
165 3bos_A Putative DNA replicatio 98.7 1.5E-08 5.1E-13 100.6 7.2 174 49-257 28-217 (242)
166 3h4m_A Proteasome-activating n 98.7 3.5E-07 1.2E-11 93.1 15.8 180 48-256 16-230 (285)
167 1sxj_D Activator 1 41 kDa subu 98.6 1.1E-07 3.7E-12 100.4 10.7 193 49-256 37-234 (353)
168 2ifg_A High affinity nerve gro 98.6 9.3E-08 3.2E-12 100.6 9.9 103 437-544 11-117 (347)
169 4fdw_A Leucine rich hypothetic 98.6 2.9E-07 1E-11 98.1 13.7 149 408-576 132-283 (401)
170 3pfi_A Holliday junction ATP-d 98.6 5.2E-06 1.8E-10 86.7 22.7 176 48-257 28-227 (338)
171 1sxj_A Activator 1 95 kDa subu 98.6 3.7E-07 1.2E-11 101.0 13.4 189 49-257 39-253 (516)
172 3u61_B DNA polymerase accessor 98.5 4.7E-07 1.6E-11 94.1 13.0 172 49-253 26-212 (324)
173 2z4s_A Chromosomal replication 98.5 6E-07 2.1E-11 96.8 13.5 184 50-256 106-305 (440)
174 3eie_A Vacuolar protein sortin 98.5 9.2E-07 3.2E-11 91.5 14.4 182 49-257 18-228 (322)
175 3pvs_A Replication-associated 98.5 1.1E-06 3.8E-11 94.5 15.2 177 48-257 25-215 (447)
176 1xwi_A SKD1 protein; VPS4B, AA 98.5 4.4E-06 1.5E-10 86.2 19.1 182 49-258 12-224 (322)
177 3d8b_A Fidgetin-like protein 1 98.5 2.7E-06 9.4E-11 89.2 17.3 183 49-258 84-296 (357)
178 1d2n_A N-ethylmaleimide-sensit 98.5 4.4E-06 1.5E-10 84.2 18.0 199 49-278 33-263 (272)
179 2qz4_A Paraplegin; AAA+, SPG7, 98.5 3E-06 1E-10 85.0 16.8 183 49-257 6-222 (262)
180 1a5t_A Delta prime, HOLB; zinc 98.5 2.5E-06 8.4E-11 88.7 16.1 168 55-255 8-203 (334)
181 1sxj_E Activator 1 40 kDa subu 98.5 2.7E-07 9.3E-12 97.3 9.0 195 49-257 14-237 (354)
182 3uk6_A RUVB-like 2; hexameric 98.5 6.8E-07 2.3E-11 94.8 11.9 196 48-257 43-303 (368)
183 1l8q_A Chromosomal replication 98.4 2.1E-06 7.1E-11 89.1 13.6 169 57-253 22-204 (324)
184 2qp9_X Vacuolar protein sortin 98.4 1.9E-06 6.5E-11 90.2 13.3 180 49-257 51-261 (355)
185 2ra8_A Uncharacterized protein 98.4 7.1E-07 2.4E-11 93.3 9.7 146 451-629 165-321 (362)
186 3vfd_A Spastin; ATPase, microt 98.4 8.6E-06 2.9E-10 86.7 18.0 182 49-257 115-326 (389)
187 1sxj_C Activator 1 40 kDa subu 98.4 1.8E-06 6E-11 90.3 12.4 176 49-253 25-208 (340)
188 3syl_A Protein CBBX; photosynt 98.4 1.5E-06 5.2E-11 89.6 11.5 153 50-228 32-221 (309)
189 2zan_A Vacuolar protein sortin 98.3 8.6E-06 3E-10 88.0 17.3 184 49-257 134-345 (444)
190 3b9p_A CG5977-PA, isoform A; A 98.3 1.5E-05 5.2E-10 81.4 18.3 179 49-257 21-233 (297)
191 4fs7_A Uncharacterized protein 98.3 2.5E-07 8.4E-12 99.2 3.6 126 407-540 66-195 (394)
192 4b4t_J 26S protease regulatory 98.3 1.4E-05 4.7E-10 83.1 15.8 172 50-250 149-354 (405)
193 2p65_A Hypothetical protein PF 98.3 2.6E-06 8.8E-11 80.4 9.6 47 48-95 21-67 (187)
194 3cf0_A Transitional endoplasmi 98.2 7.4E-06 2.5E-10 83.7 12.4 176 49-252 15-223 (301)
195 1lv7_A FTSH; alpha/beta domain 98.2 3.3E-05 1.1E-09 76.9 16.0 180 49-256 12-224 (257)
196 4b4t_L 26S protease subunit RP 98.1 2E-05 6.8E-10 83.4 14.0 172 50-250 182-387 (437)
197 3pxg_A Negative regulator of g 98.1 8.2E-06 2.8E-10 88.8 11.5 150 49-226 180-340 (468)
198 2gno_A DNA polymerase III, gam 98.1 1.1E-05 3.8E-10 81.9 10.9 148 53-224 1-152 (305)
199 4b4t_H 26S protease regulatory 98.1 4E-05 1.4E-09 80.7 15.2 172 50-250 210-415 (467)
200 4b4t_M 26S protease regulatory 98.1 2E-05 6.9E-10 83.2 12.9 171 50-249 182-386 (434)
201 2r62_A Cell division protease 98.0 4.7E-06 1.6E-10 83.9 6.7 176 49-251 11-219 (268)
202 4b4t_K 26S protease regulatory 98.0 3.5E-05 1.2E-09 81.4 13.5 172 50-250 173-379 (428)
203 2ra8_A Uncharacterized protein 98.0 6.8E-06 2.3E-10 85.9 7.9 69 503-577 250-320 (362)
204 4b4t_I 26S protease regulatory 98.0 3.5E-05 1.2E-09 80.3 12.9 172 50-250 183-388 (437)
205 1qvr_A CLPB protein; coiled co 98.0 1.1E-05 3.7E-10 95.0 10.0 154 49-224 170-345 (854)
206 3hu3_A Transitional endoplasmi 98.0 4.1E-05 1.4E-09 83.1 13.8 180 49-256 204-414 (489)
207 1io0_A Tropomodulin; LRR prote 98.0 4.4E-06 1.5E-10 78.6 5.4 119 453-578 31-165 (185)
208 1ofh_A ATP-dependent HSL prote 98.0 4.2E-05 1.4E-09 78.7 12.9 48 48-95 14-74 (310)
209 3rw6_A Nuclear RNA export fact 98.0 2E-06 6.8E-11 85.0 2.4 82 455-537 167-258 (267)
210 1r6b_X CLPA protein; AAA+, N-t 98.0 4.8E-05 1.6E-09 88.6 14.5 154 49-224 186-362 (758)
211 3n70_A Transport activator; si 97.9 8.8E-06 3E-10 73.0 5.7 46 50-95 2-48 (145)
212 4fs7_A Uncharacterized protein 97.9 4.6E-05 1.6E-09 81.3 12.1 134 400-540 81-218 (394)
213 1in4_A RUVB, holliday junction 97.9 0.00012 3.9E-09 76.0 14.8 174 49-256 25-222 (334)
214 4gt6_A Cell surface protein; l 97.9 2.3E-05 8E-10 83.6 9.6 103 430-538 83-190 (394)
215 2ce7_A Cell division protein F 97.9 0.00011 3.9E-09 78.9 14.8 174 49-250 16-221 (476)
216 3e4g_A ATP synthase subunit S, 97.9 9.9E-06 3.4E-10 74.0 4.8 88 615-724 61-154 (176)
217 1io0_A Tropomodulin; LRR prote 97.9 1E-05 3.4E-10 76.1 4.9 113 431-544 33-165 (185)
218 3pxi_A Negative regulator of g 97.9 4.4E-05 1.5E-09 88.8 11.3 150 49-226 180-340 (758)
219 3e4g_A ATP synthase subunit S, 97.8 2.6E-05 9E-10 71.2 6.5 83 458-540 61-149 (176)
220 3cf2_A TER ATPase, transitiona 97.7 0.00016 5.6E-09 82.4 12.3 172 50-250 205-407 (806)
221 4fcw_A Chaperone protein CLPB; 97.7 0.00012 4.2E-09 75.1 10.2 62 49-113 17-86 (311)
222 2c9o_A RUVB-like 1; hexameric 97.6 0.00024 8.3E-09 77.0 11.8 48 48-95 36-87 (456)
223 3rw6_A Nuclear RNA export fact 97.6 2.2E-05 7.6E-10 77.5 2.8 109 455-570 138-257 (267)
224 2bjv_A PSP operon transcriptio 97.6 0.00017 5.7E-09 72.2 9.2 62 49-113 6-68 (265)
225 2w58_A DNAI, primosome compone 97.6 0.00013 4.5E-09 69.5 8.0 53 55-110 35-90 (202)
226 3t15_A Ribulose bisphosphate c 97.6 0.00054 1.9E-08 69.3 12.9 26 70-95 35-60 (293)
227 2kjq_A DNAA-related protein; s 97.5 3.7E-05 1.3E-09 69.0 3.1 56 49-111 18-73 (149)
228 2x8a_A Nuclear valosin-contain 97.5 0.002 6.7E-08 64.4 16.0 152 49-225 10-192 (274)
229 1ixz_A ATP-dependent metallopr 97.5 0.00055 1.9E-08 67.8 11.4 173 49-250 16-221 (254)
230 1ojl_A Transcriptional regulat 97.5 0.00022 7.6E-09 72.6 8.4 47 49-95 2-49 (304)
231 1iy2_A ATP-dependent metallopr 97.4 0.0011 3.8E-08 66.6 13.2 174 48-250 39-245 (278)
232 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00078 2.7E-08 72.9 12.4 174 48-250 30-236 (499)
233 3m6a_A ATP-dependent protease 97.4 0.0013 4.3E-08 72.8 14.3 157 50-224 82-266 (543)
234 3ec2_A DNA replication protein 97.3 0.00023 7.7E-09 66.4 5.8 42 54-95 19-62 (180)
235 1ypw_A Transitional endoplasmi 97.3 0.00046 1.6E-08 80.1 9.1 173 49-250 204-407 (806)
236 2cvh_A DNA repair and recombin 97.2 0.0015 5.1E-08 63.0 10.9 88 70-164 19-116 (220)
237 3pxi_A Negative regulator of g 97.2 0.00019 6.5E-09 83.4 5.1 152 49-224 491-675 (758)
238 3hr8_A Protein RECA; alpha and 97.2 0.0015 5.2E-08 67.2 10.9 87 70-164 60-150 (356)
239 1g5t_A COB(I)alamin adenosyltr 97.2 0.00028 9.4E-09 65.4 4.4 115 71-195 28-164 (196)
240 4gt6_A Cell surface protein; l 97.2 0.0087 3E-07 63.5 16.9 130 406-541 81-216 (394)
241 1n0w_A DNA repair protein RAD5 97.0 0.0024 8.2E-08 62.6 10.4 93 70-163 23-129 (243)
242 4h09_A Hypothetical leucine ri 97.0 0.004 1.4E-07 65.7 12.6 123 410-540 44-168 (379)
243 3io5_A Recombination and repai 97.0 0.0025 8.6E-08 63.5 10.0 88 72-165 29-123 (333)
244 2z43_A DNA repair and recombin 96.9 0.0038 1.3E-07 64.1 11.2 93 70-163 106-213 (324)
245 2b8t_A Thymidine kinase; deoxy 96.9 0.00033 1.1E-08 67.0 2.9 112 70-193 11-125 (223)
246 1v5w_A DMC1, meiotic recombina 96.9 0.0054 1.8E-07 63.4 12.2 59 70-129 121-182 (343)
247 1jr3_D DNA polymerase III, del 96.9 0.0053 1.8E-07 63.7 12.1 165 61-256 9-184 (343)
248 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0015 5.2E-08 75.9 7.6 59 48-112 457-523 (758)
249 1qvr_A CLPB protein; coiled co 96.8 0.0023 8E-08 75.2 8.8 60 50-112 559-626 (854)
250 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.00082 2.8E-08 67.3 3.9 71 71-164 123-193 (331)
251 2zr9_A Protein RECA, recombina 96.7 0.0039 1.3E-07 64.5 9.0 87 70-164 60-150 (349)
252 2i1q_A DNA repair and recombin 96.6 0.0073 2.5E-07 62.0 10.3 93 70-163 97-214 (322)
253 1u94_A RECA protein, recombina 96.6 0.0048 1.6E-07 63.8 8.6 86 70-163 62-151 (356)
254 1xp8_A RECA protein, recombina 96.6 0.0056 1.9E-07 63.5 9.1 86 70-163 73-162 (366)
255 3cf2_A TER ATPase, transitiona 96.6 0.003 1E-07 72.0 7.5 173 48-249 476-682 (806)
256 2qgz_A Helicase loader, putati 96.5 0.0016 5.6E-08 66.2 4.6 55 54-110 133-189 (308)
257 3co5_A Putative two-component 96.5 0.00058 2E-08 60.8 1.0 47 49-95 4-51 (143)
258 4a74_A DNA repair and recombin 96.4 0.018 6.1E-07 55.7 11.0 58 70-128 24-84 (231)
259 3ice_A Transcription terminati 96.4 0.0026 8.9E-08 65.0 4.8 53 60-113 163-215 (422)
260 3lda_A DNA repair protein RAD5 96.3 0.016 5.3E-07 60.9 10.7 93 70-163 177-283 (400)
261 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0059 2E-07 59.3 7.1 40 70-112 22-61 (235)
262 4h09_A Hypothetical leucine ri 96.3 0.012 4.1E-07 62.0 9.8 102 431-537 237-340 (379)
263 1rz3_A Hypothetical protein rb 96.2 0.005 1.7E-07 58.3 5.9 43 53-95 2-46 (201)
264 2r44_A Uncharacterized protein 96.2 0.003 1E-07 65.3 4.2 45 48-95 26-70 (331)
265 3bh0_A DNAB-like replicative h 96.1 0.013 4.4E-07 59.8 8.8 52 70-126 67-118 (315)
266 3c8u_A Fructokinase; YP_612366 96.1 0.0051 1.7E-07 58.6 5.3 40 56-95 6-46 (208)
267 1vma_A Cell division protein F 96.1 0.0085 2.9E-07 60.5 7.0 106 55-163 81-196 (306)
268 1pzn_A RAD51, DNA repair and r 96.1 0.022 7.4E-07 59.0 10.2 94 70-164 130-242 (349)
269 2orw_A Thymidine kinase; TMTK, 96.0 0.00084 2.9E-08 62.5 -0.9 24 72-95 4-27 (184)
270 3nbx_X ATPase RAVA; AAA+ ATPas 95.9 0.0053 1.8E-07 66.5 5.0 44 49-95 22-65 (500)
271 3e70_C DPA, signal recognition 95.9 0.028 9.6E-07 57.3 9.7 57 70-129 128-185 (328)
272 2px0_A Flagellar biosynthesis 95.8 0.022 7.7E-07 57.2 8.5 87 70-162 104-191 (296)
273 2dr3_A UPF0273 protein PH0284; 95.8 0.013 4.5E-07 57.4 6.7 48 70-122 22-69 (247)
274 1j8m_F SRP54, signal recogniti 95.8 0.029 9.8E-07 56.4 9.2 90 71-163 98-190 (297)
275 1qhx_A CPT, protein (chloramph 95.8 0.0052 1.8E-07 56.8 3.5 24 72-95 4-27 (178)
276 3dm5_A SRP54, signal recogniti 95.7 0.049 1.7E-06 57.5 10.8 39 70-111 99-137 (443)
277 1sky_E F1-ATPase, F1-ATP synth 95.6 0.033 1.1E-06 59.0 9.3 62 62-125 142-204 (473)
278 3kb2_A SPBC2 prophage-derived 95.6 0.0055 1.9E-07 56.3 3.1 24 72-95 2-25 (173)
279 3hws_A ATP-dependent CLP prote 95.6 0.01 3.5E-07 62.1 5.4 46 50-95 16-75 (363)
280 2p5t_B PEZT; postsegregational 95.6 0.0057 2E-07 60.3 3.2 26 70-95 31-56 (253)
281 3kl4_A SRP54, signal recogniti 95.6 0.047 1.6E-06 57.7 10.3 39 70-111 96-134 (433)
282 3vaa_A Shikimate kinase, SK; s 95.5 0.0073 2.5E-07 57.1 3.5 26 70-95 24-49 (199)
283 1ex7_A Guanylate kinase; subst 95.5 0.0052 1.8E-07 56.9 2.3 24 72-95 2-25 (186)
284 2ffh_A Protein (FFH); SRP54, s 95.5 0.024 8.4E-07 59.7 7.7 57 70-129 97-154 (425)
285 1tue_A Replication protein E1; 95.5 0.013 4.5E-07 54.3 4.9 44 52-95 39-82 (212)
286 2xxa_A Signal recognition part 95.4 0.063 2.1E-06 57.0 10.7 105 56-162 77-192 (433)
287 1kgd_A CASK, peripheral plasma 95.4 0.009 3.1E-07 55.4 3.7 25 71-95 5-29 (180)
288 1zu4_A FTSY; GTPase, signal re 95.4 0.023 8E-07 57.7 6.9 40 70-112 104-143 (320)
289 3umf_A Adenylate kinase; rossm 95.3 0.039 1.3E-06 52.4 7.9 26 70-95 28-53 (217)
290 1ls1_A Signal recognition part 95.3 0.026 9E-07 56.7 7.1 90 70-162 97-189 (295)
291 1odf_A YGR205W, hypothetical 3 95.3 0.016 5.4E-07 58.1 5.4 27 69-95 29-55 (290)
292 3uie_A Adenylyl-sulfate kinase 95.3 0.0096 3.3E-07 56.2 3.7 26 70-95 24-49 (200)
293 1cr0_A DNA primase/helicase; R 95.3 0.046 1.6E-06 55.2 9.0 41 70-112 34-74 (296)
294 1zp6_A Hypothetical protein AT 95.3 0.01 3.6E-07 55.5 3.8 26 70-95 8-33 (191)
295 3tau_A Guanylate kinase, GMP k 95.3 0.011 3.7E-07 56.3 3.9 26 70-95 7-32 (208)
296 4a1f_A DNAB helicase, replicat 95.3 0.034 1.2E-06 56.7 7.7 52 70-126 45-96 (338)
297 3trf_A Shikimate kinase, SK; a 95.3 0.0091 3.1E-07 55.6 3.3 25 71-95 5-29 (185)
298 3cmu_A Protein RECA, recombina 95.3 0.025 8.6E-07 70.4 7.9 86 70-163 1426-1515(2050)
299 1um8_A ATP-dependent CLP prote 95.2 0.016 5.4E-07 61.0 5.4 47 49-95 21-96 (376)
300 2ga8_A Hypothetical 39.9 kDa p 95.2 0.021 7E-07 58.2 5.9 45 51-95 1-48 (359)
301 2hf9_A Probable hydrogenase ni 95.2 0.018 6.3E-07 55.4 5.3 43 52-95 20-62 (226)
302 2ck3_D ATP synthase subunit be 95.2 0.046 1.6E-06 57.7 8.5 65 60-126 142-207 (482)
303 1kag_A SKI, shikimate kinase I 95.1 0.0093 3.2E-07 54.8 2.8 24 72-95 5-28 (173)
304 3jvv_A Twitching mobility prot 95.1 0.003 1E-07 65.4 -0.7 112 71-197 123-234 (356)
305 3sr0_A Adenylate kinase; phosp 95.1 0.041 1.4E-06 51.9 7.2 23 73-95 2-24 (206)
306 3lw7_A Adenylate kinase relate 95.1 0.011 3.9E-07 54.3 3.3 23 72-95 2-24 (179)
307 1g8p_A Magnesium-chelatase 38 95.0 0.009 3.1E-07 62.2 2.8 46 49-95 24-69 (350)
308 1nks_A Adenylate kinase; therm 95.0 0.012 4.1E-07 55.1 3.4 24 72-95 2-25 (194)
309 1gvn_B Zeta; postsegregational 95.0 0.015 5.1E-07 58.4 4.2 26 70-95 32-57 (287)
310 1ly1_A Polynucleotide kinase; 95.0 0.014 4.7E-07 54.0 3.7 22 72-93 3-24 (181)
311 3ney_A 55 kDa erythrocyte memb 95.0 0.014 4.8E-07 54.4 3.6 26 70-95 18-43 (197)
312 4eun_A Thermoresistant glucoki 95.0 0.013 4.4E-07 55.4 3.5 26 70-95 28-53 (200)
313 3t61_A Gluconokinase; PSI-biol 95.0 0.0098 3.4E-07 56.3 2.6 25 71-95 18-42 (202)
314 3tqc_A Pantothenate kinase; bi 95.0 0.024 8.2E-07 57.4 5.6 45 51-95 69-116 (321)
315 2rhm_A Putative kinase; P-loop 95.0 0.014 4.6E-07 54.8 3.6 26 70-95 4-29 (193)
316 2qor_A Guanylate kinase; phosp 95.0 0.012 3.9E-07 55.9 3.1 26 70-95 11-36 (204)
317 1ypw_A Transitional endoplasmi 95.0 0.0013 4.5E-08 76.3 -4.3 47 49-95 477-535 (806)
318 3fwy_A Light-independent proto 94.9 0.018 6.2E-07 58.4 4.6 40 70-112 47-86 (314)
319 1pgv_A TMD-1, tropomodulin TMD 94.9 0.022 7.5E-07 52.9 4.6 118 454-577 37-170 (197)
320 2plr_A DTMP kinase, probable t 94.9 0.032 1.1E-06 53.1 6.1 25 71-95 4-28 (213)
321 3iij_A Coilin-interacting nucl 94.9 0.012 4E-07 54.5 2.8 25 71-95 11-35 (180)
322 3a00_A Guanylate kinase, GMP k 94.9 0.012 4E-07 54.9 2.8 24 72-95 2-25 (186)
323 3tr0_A Guanylate kinase, GMP k 94.9 0.016 5.6E-07 54.8 3.8 25 71-95 7-31 (205)
324 2ze6_A Isopentenyl transferase 94.8 0.014 4.9E-07 57.3 3.5 24 72-95 2-25 (253)
325 1fx0_B ATP synthase beta chain 94.8 0.06 2E-06 57.1 8.2 101 61-163 155-276 (498)
326 1knq_A Gluconate kinase; ALFA/ 94.8 0.017 5.8E-07 53.1 3.7 26 70-95 7-32 (175)
327 2wsm_A Hydrogenase expression/ 94.8 0.021 7.1E-07 54.8 4.4 45 50-95 10-54 (221)
328 1kht_A Adenylate kinase; phosp 94.8 0.015 5.2E-07 54.3 3.3 24 72-95 4-27 (192)
329 3k1j_A LON protease, ATP-depen 94.8 0.033 1.1E-06 62.5 6.6 44 49-95 41-84 (604)
330 2yhs_A FTSY, cell division pro 94.8 0.08 2.7E-06 56.5 9.0 26 70-95 292-317 (503)
331 1via_A Shikimate kinase; struc 94.7 0.013 4.4E-07 54.0 2.6 24 72-95 5-28 (175)
332 2j37_W Signal recognition part 94.7 0.12 4.2E-06 55.7 10.6 57 70-129 100-157 (504)
333 3rfe_A Platelet glycoprotein I 94.7 0.041 1.4E-06 47.5 5.7 34 483-516 32-66 (130)
334 2r6a_A DNAB helicase, replicat 94.7 0.047 1.6E-06 58.9 7.4 51 70-124 202-252 (454)
335 2pt7_A CAG-ALFA; ATPase, prote 94.7 0.046 1.6E-06 55.9 6.9 82 72-166 172-253 (330)
336 2j41_A Guanylate kinase; GMP, 94.7 0.019 6.6E-07 54.4 3.9 25 71-95 6-30 (207)
337 1ukz_A Uridylate kinase; trans 94.7 0.019 6.7E-07 54.2 3.9 26 70-95 14-39 (203)
338 4gp7_A Metallophosphoesterase; 94.7 0.017 5.9E-07 52.9 3.3 22 70-91 8-29 (171)
339 1zuh_A Shikimate kinase; alpha 94.7 0.017 5.7E-07 52.7 3.2 26 70-95 6-31 (168)
340 1sq5_A Pantothenate kinase; P- 94.7 0.18 6E-06 51.1 11.1 26 70-95 79-104 (308)
341 1g41_A Heat shock protein HSLU 94.6 0.022 7.6E-07 60.2 4.4 48 48-95 14-74 (444)
342 2c95_A Adenylate kinase 1; tra 94.6 0.018 6.2E-07 54.0 3.5 26 70-95 8-33 (196)
343 1y63_A LMAJ004144AAA protein; 94.6 0.02 6.8E-07 53.2 3.7 25 70-94 9-33 (184)
344 3tlx_A Adenylate kinase 2; str 94.6 0.029 9.8E-07 54.8 4.9 43 53-95 10-53 (243)
345 2yvu_A Probable adenylyl-sulfa 94.6 0.023 7.8E-07 52.9 4.0 26 70-95 12-37 (186)
346 3asz_A Uridine kinase; cytidin 94.6 0.02 6.9E-07 54.5 3.7 26 70-95 5-30 (211)
347 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.5E-07 54.6 2.9 25 71-95 4-28 (198)
348 1ye8_A Protein THEP1, hypothet 94.5 0.02 6.9E-07 52.7 3.4 23 73-95 2-24 (178)
349 2qt1_A Nicotinamide riboside k 94.5 0.023 8E-07 53.9 3.9 26 70-95 20-45 (207)
350 1xjc_A MOBB protein homolog; s 94.5 0.021 7.1E-07 51.7 3.3 26 70-95 3-28 (169)
351 3l0o_A Transcription terminati 94.5 0.011 3.6E-07 60.5 1.5 54 59-113 163-216 (427)
352 2vli_A Antibiotic resistance p 94.5 0.015 5.3E-07 53.8 2.5 25 71-95 5-29 (183)
353 1tev_A UMP-CMP kinase; ploop, 94.5 0.021 7.1E-07 53.5 3.5 25 71-95 3-27 (196)
354 1htw_A HI0065; nucleotide-bind 94.5 0.026 8.7E-07 50.7 3.8 26 70-95 32-57 (158)
355 1rj9_A FTSY, signal recognitio 94.4 0.023 8E-07 57.2 4.0 26 70-95 101-126 (304)
356 2bdt_A BH3686; alpha-beta prot 94.4 0.022 7.5E-07 53.1 3.5 23 72-94 3-25 (189)
357 1s96_A Guanylate kinase, GMP k 94.4 0.023 8E-07 54.3 3.7 26 70-95 15-40 (219)
358 1e6c_A Shikimate kinase; phosp 94.4 0.017 6E-07 52.9 2.7 24 72-95 3-26 (173)
359 2q6t_A DNAB replication FORK h 94.4 0.19 6.3E-06 54.0 11.2 52 70-125 199-250 (444)
360 2jaq_A Deoxyguanosine kinase; 94.4 0.02 6.9E-07 54.1 3.2 23 73-95 2-24 (205)
361 1znw_A Guanylate kinase, GMP k 94.4 0.023 7.8E-07 53.9 3.6 26 70-95 19-44 (207)
362 2iyv_A Shikimate kinase, SK; t 94.4 0.016 5.4E-07 53.8 2.3 24 72-95 3-26 (184)
363 3cm0_A Adenylate kinase; ATP-b 94.4 0.023 7.7E-07 52.9 3.4 25 71-95 4-28 (186)
364 2bbw_A Adenylate kinase 4, AK4 94.3 0.022 7.5E-07 55.8 3.5 25 71-95 27-51 (246)
365 3bgw_A DNAB-like replicative h 94.3 0.092 3.2E-06 56.1 8.5 50 70-124 196-245 (444)
366 2bwj_A Adenylate kinase 5; pho 94.3 0.021 7.3E-07 53.7 3.2 25 71-95 12-36 (199)
367 1cke_A CK, MSSA, protein (cyti 94.3 0.021 7.3E-07 55.0 3.3 24 72-95 6-29 (227)
368 3cmu_A Protein RECA, recombina 94.3 0.083 2.8E-06 66.0 9.1 87 70-164 382-472 (2050)
369 1pgv_A TMD-1, tropomodulin TMD 94.3 0.064 2.2E-06 49.7 6.3 89 479-574 38-136 (197)
370 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.025 8.5E-07 55.9 3.8 26 70-95 3-28 (260)
371 3end_A Light-independent proto 94.3 0.029 1E-06 57.0 4.4 42 70-114 40-81 (307)
372 1uf9_A TT1252 protein; P-loop, 94.3 0.028 9.5E-07 53.1 3.9 25 70-94 7-31 (203)
373 2if2_A Dephospho-COA kinase; a 94.3 0.024 8.1E-07 53.7 3.4 22 72-93 2-23 (204)
374 4e22_A Cytidylate kinase; P-lo 94.3 0.026 9E-07 55.4 3.8 26 70-95 26-51 (252)
375 1z6g_A Guanylate kinase; struc 94.2 0.022 7.5E-07 54.5 3.1 25 71-95 23-47 (218)
376 1zd8_A GTP:AMP phosphotransfer 94.2 0.025 8.6E-07 54.6 3.4 26 70-95 6-31 (227)
377 2j9r_A Thymidine kinase; TK1, 94.2 0.031 1E-06 52.5 3.8 110 70-194 27-138 (214)
378 2cdn_A Adenylate kinase; phosp 94.2 0.027 9.3E-07 53.1 3.6 26 70-95 19-44 (201)
379 1qf9_A UMP/CMP kinase, protein 94.1 0.027 9.1E-07 52.7 3.3 25 71-95 6-30 (194)
380 2jeo_A Uridine-cytidine kinase 94.1 0.032 1.1E-06 54.6 4.0 26 70-95 24-49 (245)
381 1uj2_A Uridine-cytidine kinase 94.1 0.03 1E-06 55.0 3.8 26 70-95 21-46 (252)
382 3tif_A Uncharacterized ABC tra 94.1 0.044 1.5E-06 53.0 4.9 26 70-95 30-55 (235)
383 3vr4_D V-type sodium ATPase su 94.0 0.075 2.6E-06 55.8 6.8 103 61-163 141-258 (465)
384 1jjv_A Dephospho-COA kinase; P 94.0 0.03 1E-06 53.0 3.6 22 72-93 3-24 (206)
385 3iqw_A Tail-anchored protein t 94.0 0.064 2.2E-06 54.8 6.2 46 70-118 15-60 (334)
386 1zak_A Adenylate kinase; ATP:A 94.0 0.024 8.2E-07 54.5 2.9 26 70-95 4-29 (222)
387 2wwf_A Thymidilate kinase, put 94.0 0.028 9.4E-07 53.5 3.3 25 71-95 10-34 (212)
388 1nn5_A Similar to deoxythymidy 94.0 0.029 1E-06 53.5 3.5 25 71-95 9-33 (215)
389 3cmw_A Protein RECA, recombina 94.0 0.077 2.6E-06 65.4 7.8 88 70-165 382-473 (1706)
390 2z0h_A DTMP kinase, thymidylat 94.0 0.051 1.8E-06 50.9 5.2 23 73-95 2-24 (197)
391 2pt5_A Shikimate kinase, SK; a 94.0 0.028 9.7E-07 51.1 3.2 23 73-95 2-24 (168)
392 3aez_A Pantothenate kinase; tr 94.0 0.034 1.1E-06 56.4 4.0 26 70-95 89-114 (312)
393 2v54_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 52.6 3.8 25 71-95 4-28 (204)
394 1aky_A Adenylate kinase; ATP:A 94.0 0.03 1E-06 53.7 3.5 26 70-95 3-28 (220)
395 3io3_A DEHA2D07832P; chaperone 94.0 0.053 1.8E-06 55.7 5.5 47 70-117 17-63 (348)
396 3b5x_A Lipid A export ATP-bind 94.0 0.16 5.3E-06 56.7 9.8 26 70-95 368-393 (582)
397 2qe7_A ATP synthase subunit al 93.9 0.13 4.5E-06 54.6 8.5 99 60-163 151-264 (502)
398 2og2_A Putative signal recogni 93.9 0.056 1.9E-06 55.7 5.5 26 70-95 156-181 (359)
399 2onk_A Molybdate/tungstate ABC 93.9 0.052 1.8E-06 52.6 5.1 26 69-95 23-48 (240)
400 3gqb_B V-type ATP synthase bet 93.9 0.074 2.5E-06 55.8 6.4 103 61-163 137-261 (464)
401 1q57_A DNA primase/helicase; d 93.8 0.17 5.7E-06 55.4 9.5 52 70-125 241-292 (503)
402 2r8r_A Sensor protein; KDPD, P 93.8 0.063 2.2E-06 50.8 5.2 43 71-116 6-48 (228)
403 2pbr_A DTMP kinase, thymidylat 93.8 0.031 1.1E-06 52.3 3.2 23 73-95 2-24 (195)
404 3a8t_A Adenylate isopentenyltr 93.8 0.04 1.4E-06 55.8 4.0 26 70-95 39-64 (339)
405 3exa_A TRNA delta(2)-isopenten 93.8 0.04 1.4E-06 55.0 3.9 25 71-95 3-27 (322)
406 1b0u_A Histidine permease; ABC 93.8 0.054 1.8E-06 53.4 4.9 26 70-95 31-56 (262)
407 3hjn_A DTMP kinase, thymidylat 93.7 0.091 3.1E-06 49.2 6.2 23 73-95 2-24 (197)
408 1cp2_A CP2, nitrogenase iron p 93.7 0.055 1.9E-06 53.7 5.0 39 72-113 2-40 (269)
409 3llm_A ATP-dependent RNA helic 93.7 0.21 7.1E-06 48.3 9.1 93 72-165 77-188 (235)
410 1u0j_A DNA replication protein 93.7 0.066 2.2E-06 52.2 5.3 40 56-95 88-128 (267)
411 3fdi_A Uncharacterized protein 93.7 0.11 3.9E-06 48.7 6.9 24 72-95 7-30 (201)
412 2pcj_A ABC transporter, lipopr 93.7 0.054 1.8E-06 52.0 4.7 26 70-95 29-54 (224)
413 3b9q_A Chloroplast SRP recepto 93.7 0.038 1.3E-06 55.7 3.7 26 70-95 99-124 (302)
414 2grj_A Dephospho-COA kinase; T 93.7 0.036 1.2E-06 51.7 3.3 26 70-95 11-36 (192)
415 3oaa_A ATP synthase subunit al 93.7 0.34 1.2E-05 51.3 10.9 99 61-163 152-264 (513)
416 2r9v_A ATP synthase subunit al 93.7 0.12 4E-06 55.0 7.5 98 61-163 165-277 (515)
417 3fb4_A Adenylate kinase; psych 93.7 0.033 1.1E-06 53.2 3.2 23 73-95 2-24 (216)
418 2pez_A Bifunctional 3'-phospho 93.6 0.041 1.4E-06 50.7 3.6 26 70-95 4-29 (179)
419 3dl0_A Adenylate kinase; phosp 93.6 0.036 1.2E-06 52.9 3.4 23 73-95 2-24 (216)
420 1m7g_A Adenylylsulfate kinase; 93.6 0.04 1.4E-06 52.4 3.6 26 70-95 24-49 (211)
421 2olj_A Amino acid ABC transpor 93.6 0.06 2.1E-06 52.9 4.9 26 70-95 49-74 (263)
422 1xx6_A Thymidine kinase; NESG, 93.6 0.018 6.2E-07 53.5 1.0 109 71-194 8-118 (191)
423 1np6_A Molybdopterin-guanine d 93.5 0.041 1.4E-06 50.3 3.3 26 70-95 5-30 (174)
424 3b85_A Phosphate starvation-in 93.5 0.047 1.6E-06 51.6 3.8 23 72-94 23-45 (208)
425 3d3q_A TRNA delta(2)-isopenten 93.5 0.04 1.4E-06 55.9 3.5 24 72-95 8-31 (340)
426 2afh_E Nitrogenase iron protei 93.5 0.054 1.9E-06 54.4 4.5 40 71-113 2-41 (289)
427 3p32_A Probable GTPase RV1496/ 93.5 0.12 4.2E-06 53.5 7.3 38 58-95 65-103 (355)
428 3r20_A Cytidylate kinase; stru 93.4 0.041 1.4E-06 52.8 3.3 25 71-95 9-33 (233)
429 3gfo_A Cobalt import ATP-bindi 93.4 0.062 2.1E-06 53.2 4.7 26 70-95 33-58 (275)
430 3j16_B RLI1P; ribosome recycli 93.4 0.43 1.5E-05 53.0 11.9 28 70-97 102-129 (608)
431 2f1r_A Molybdopterin-guanine d 93.4 0.025 8.6E-07 51.5 1.6 25 71-95 2-26 (171)
432 3zq6_A Putative arsenical pump 93.3 0.042 1.4E-06 56.2 3.5 46 71-119 14-59 (324)
433 1vpl_A ABC transporter, ATP-bi 93.3 0.07 2.4E-06 52.2 4.9 26 70-95 40-65 (256)
434 2ixe_A Antigen peptide transpo 93.3 0.069 2.4E-06 52.9 4.9 26 70-95 44-69 (271)
435 1gtv_A TMK, thymidylate kinase 93.3 0.022 7.5E-07 54.3 1.2 24 72-95 1-24 (214)
436 2i3b_A HCR-ntpase, human cance 93.3 0.039 1.3E-06 51.2 2.9 24 72-95 2-25 (189)
437 3crm_A TRNA delta(2)-isopenten 93.3 0.047 1.6E-06 55.1 3.6 24 72-95 6-29 (323)
438 2pze_A Cystic fibrosis transme 93.3 0.063 2.2E-06 51.7 4.4 26 70-95 33-58 (229)
439 4eaq_A DTMP kinase, thymidylat 93.3 0.09 3.1E-06 50.6 5.5 26 70-95 25-50 (229)
440 1yrb_A ATP(GTP)binding protein 93.3 0.089 3.1E-06 51.9 5.7 26 70-95 13-38 (262)
441 1sgw_A Putative ABC transporte 93.3 0.061 2.1E-06 51.0 4.2 26 70-95 34-59 (214)
442 3foz_A TRNA delta(2)-isopenten 93.3 0.05 1.7E-06 54.2 3.7 26 70-95 9-34 (316)
443 1vht_A Dephospho-COA kinase; s 93.2 0.056 1.9E-06 51.7 4.0 23 71-93 4-26 (218)
444 3lnc_A Guanylate kinase, GMP k 93.2 0.033 1.1E-06 53.9 2.3 25 71-95 27-52 (231)
445 2f6r_A COA synthase, bifunctio 93.2 0.051 1.8E-06 54.2 3.8 24 70-93 74-97 (281)
446 3nwj_A ATSK2; P loop, shikimat 93.2 0.039 1.3E-06 53.8 2.8 25 71-95 48-72 (250)
447 2ehv_A Hypothetical protein PH 93.2 0.043 1.5E-06 53.7 3.2 24 70-93 29-52 (251)
448 2ff7_A Alpha-hemolysin translo 93.2 0.072 2.5E-06 51.9 4.7 26 70-95 34-59 (247)
449 2qmh_A HPR kinase/phosphorylas 93.2 0.05 1.7E-06 50.2 3.3 25 71-95 34-58 (205)
450 1ji0_A ABC transporter; ATP bi 93.2 0.073 2.5E-06 51.7 4.7 26 70-95 31-56 (240)
451 2cbz_A Multidrug resistance-as 93.1 0.049 1.7E-06 52.8 3.4 26 70-95 30-55 (237)
452 1ak2_A Adenylate kinase isoenz 93.1 0.052 1.8E-06 52.5 3.6 26 70-95 15-40 (233)
453 1g6h_A High-affinity branched- 93.1 0.075 2.6E-06 52.2 4.7 26 70-95 32-57 (257)
454 2yz2_A Putative ABC transporte 93.0 0.08 2.8E-06 52.3 4.9 26 70-95 32-57 (266)
455 4g1u_C Hemin import ATP-bindin 93.0 0.08 2.7E-06 52.2 4.8 26 70-95 36-61 (266)
456 2c61_A A-type ATP synthase non 93.0 0.14 4.7E-06 54.2 6.8 103 61-163 142-259 (469)
457 1nlf_A Regulatory protein REPA 93.0 0.071 2.4E-06 53.2 4.5 43 71-113 30-79 (279)
458 3be4_A Adenylate kinase; malar 93.0 0.044 1.5E-06 52.4 2.8 25 71-95 5-29 (217)
459 3rfe_A Platelet glycoprotein I 93.0 0.14 4.8E-06 44.1 5.8 34 435-468 32-65 (130)
460 2fz4_A DNA repair protein RAD2 93.0 0.42 1.4E-05 46.1 9.9 100 53-165 94-204 (237)
461 3ake_A Cytidylate kinase; CMP 93.0 0.05 1.7E-06 51.5 3.2 24 72-95 3-26 (208)
462 3e1s_A Exodeoxyribonuclease V, 93.0 0.18 6.1E-06 55.8 8.0 24 72-95 205-228 (574)
463 3kjh_A CO dehydrogenase/acetyl 93.0 0.089 3E-06 51.5 5.1 41 74-117 3-43 (254)
464 3cmw_A Protein RECA, recombina 92.9 0.11 3.8E-06 64.0 6.7 86 70-163 1430-1519(1706)
465 2ck3_A ATP synthase subunit al 92.9 0.21 7.1E-06 53.2 8.0 104 60-163 151-272 (510)
466 1fx0_A ATP synthase alpha chai 92.9 0.18 6E-06 53.7 7.4 89 70-163 162-265 (507)
467 4dzz_A Plasmid partitioning pr 92.9 0.065 2.2E-06 50.6 3.9 44 72-118 2-46 (206)
468 1a7j_A Phosphoribulokinase; tr 92.8 0.031 1E-06 56.1 1.5 26 70-95 4-29 (290)
469 1mv5_A LMRA, multidrug resista 92.8 0.061 2.1E-06 52.4 3.6 26 70-95 27-52 (243)
470 3fkq_A NTRC-like two-domain pr 92.8 0.11 3.8E-06 54.2 5.8 61 52-115 113-185 (373)
471 2zu0_C Probable ATP-dependent 92.8 0.065 2.2E-06 53.0 3.7 25 70-94 45-69 (267)
472 2ihy_A ABC transporter, ATP-bi 92.8 0.089 3.1E-06 52.2 4.8 26 70-95 46-71 (279)
473 2qi9_C Vitamin B12 import ATP- 92.7 0.075 2.6E-06 51.8 4.1 26 70-95 25-50 (249)
474 2xb4_A Adenylate kinase; ATP-b 92.7 0.059 2E-06 51.7 3.2 23 73-95 2-24 (223)
475 3ug7_A Arsenical pump-driving 92.7 0.13 4.4E-06 53.1 6.0 44 68-114 23-66 (349)
476 2eyu_A Twitching motility prot 92.6 0.073 2.5E-06 52.4 3.9 26 70-95 24-49 (261)
477 1e4v_A Adenylate kinase; trans 92.6 0.057 2E-06 51.4 3.1 23 73-95 2-24 (214)
478 3vr4_A V-type sodium ATPase ca 92.6 0.3 1E-05 52.6 8.7 59 60-123 221-280 (600)
479 4hlc_A DTMP kinase, thymidylat 92.6 0.12 4.3E-06 48.5 5.3 24 72-95 3-26 (205)
480 2ghi_A Transport protein; mult 92.6 0.064 2.2E-06 52.8 3.4 26 70-95 45-70 (260)
481 2d2e_A SUFC protein; ABC-ATPas 92.5 0.069 2.3E-06 52.2 3.5 25 70-94 28-52 (250)
482 1svm_A Large T antigen; AAA+ f 92.5 0.12 4.3E-06 53.5 5.6 27 69-95 167-193 (377)
483 2ged_A SR-beta, signal recogni 92.5 0.14 4.7E-06 47.6 5.5 26 70-95 47-72 (193)
484 3nh6_A ATP-binding cassette SU 92.5 0.083 2.9E-06 53.1 4.1 26 70-95 79-104 (306)
485 1oix_A RAS-related protein RAB 92.5 0.07 2.4E-06 49.7 3.3 25 71-95 29-53 (191)
486 3zvl_A Bifunctional polynucleo 92.5 0.069 2.4E-06 56.7 3.7 26 70-95 257-282 (416)
487 3qf4_A ABC transporter, ATP-bi 92.4 0.2 7E-06 55.7 7.6 26 70-95 368-393 (587)
488 2v3c_C SRP54, signal recogniti 92.4 0.052 1.8E-06 57.6 2.7 38 71-111 99-136 (432)
489 2dyk_A GTP-binding protein; GT 92.4 0.083 2.8E-06 47.3 3.7 24 72-95 2-25 (161)
490 2v9p_A Replication protein E1; 92.4 0.076 2.6E-06 53.2 3.6 26 70-95 125-150 (305)
491 3fvq_A Fe(3+) IONS import ATP- 92.3 0.12 4.1E-06 53.1 5.1 26 70-95 29-54 (359)
492 4edh_A DTMP kinase, thymidylat 92.3 0.18 6.3E-06 47.7 6.1 25 71-95 6-30 (213)
493 1g8f_A Sulfate adenylyltransfe 92.3 0.11 3.7E-06 56.1 5.0 45 51-95 374-419 (511)
494 3v9p_A DTMP kinase, thymidylat 92.2 0.091 3.1E-06 50.3 3.8 25 71-95 25-49 (227)
495 2woo_A ATPase GET3; tail-ancho 92.2 0.13 4.3E-06 52.7 5.1 42 70-114 18-59 (329)
496 2zej_A Dardarin, leucine-rich 92.1 0.066 2.2E-06 49.5 2.7 22 73-94 4-25 (184)
497 2wji_A Ferrous iron transport 92.1 0.085 2.9E-06 47.7 3.4 23 72-94 4-26 (165)
498 2woj_A ATPase GET3; tail-ancho 92.1 0.19 6.5E-06 51.9 6.4 49 70-119 17-65 (354)
499 2nq2_C Hypothetical ABC transp 92.1 0.077 2.6E-06 51.9 3.2 26 70-95 30-55 (253)
500 2yv5_A YJEQ protein; hydrolase 92.0 0.16 5.5E-06 51.2 5.6 23 72-95 166-188 (302)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.3e-41 Score=375.00 Aligned_cols=315 Identities=14% Similarity=0.138 Sum_probs=246.5
Q ss_pred cCCCcccchHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHh--cccCCCCCCCEEEEEEeCCcc--CHHHH
Q 038105 46 HTEPTVVGLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINN--KFVDNPTDFDYVIWVVVSKDL--QLEKI 119 (791)
Q Consensus 46 ~~~~~~vGR~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~ 119 (791)
|..+..|||+.++++|.++|..+ +..++|+|+||||+||||||+++|+ +. ....+|+.++|++++... +...+
T Consensus 125 p~~~~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 125 PKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp BCCCCSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHH
Confidence 33344359999999999999653 3579999999999999999999997 22 336789999999999875 78999
Q ss_pred HHHHHHHhCCCCC-----CcccccHHHHHHHHHHHhCCc-eEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCc
Q 038105 120 QETIGKKIGLYTD-----SWKDKRLEEKAQDIFKTLSKK-KFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 120 ~~~i~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
+..|+.+++.... .....+..+....+.+.++++ ++||||||||+..++ . ++. .+|++||||||+
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~~~----~~gs~ilvTTR~ 274 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R----WAQ----ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----HHH----HTTCEEEEEESB
T ss_pred HHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----ccc----cCCCEEEEEcCC
Confidence 9999999986421 122345667789999999996 999999999987654 2 221 258999999999
Q ss_pred HHHHhhcc-ccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHH
Q 038105 194 VDVCGRME-DRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYA 272 (791)
Q Consensus 194 ~~~~~~~~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~ 272 (791)
..++..+. ...+|++++|++++|++||.++++... ..+...+.+.+|+++|+|+||||+++|+.++.+ .|...
T Consensus 275 ~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~ 348 (549)
T 2a5y_B 275 VEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM 348 (549)
T ss_dssp GGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH
T ss_pred HHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH
Confidence 98877664 346799999999999999999987543 235667889999999999999999999998753 25443
Q ss_pred HHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHh-----------hhccCCCCcccChHhHHHHHHHc--Ccccc
Q 038105 273 IEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFL-----------YCCLYPEDYSIYKRDLIDCWICE--GFLDE 339 (791)
Q Consensus 273 l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~-----------~~~~f~~~~~~~~~~l~~~w~~~--g~~~~ 339 (791)
+.+....... ....+..++..||+.||+ ++|.||+ |||+||+++.++ +.+|+|+ |++..
T Consensus 349 -~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~ 420 (549)
T 2a5y_B 349 -AQLNNKLESR--GLVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICS 420 (549)
T ss_dssp -HHHHHHHHHH--CSSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC----
T ss_pred -HHhHHHhhcc--cHHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceecc
Confidence 4444332221 124789999999999998 8999999 999999999998 7899999 99976
Q ss_pred cc--cchhhhhHHHHHHHHHhccccccc---CCcEEechHHHHHHHHHHhh
Q 038105 340 AK--FGTQNQGYHIVTTLVRACLLEEVE---DDQVKMHDVIRDMALWITCE 385 (791)
Q Consensus 340 ~~--~~~~~~~~~~l~~L~~~~ll~~~~---~~~~~~h~li~~~~~~~~~~ 385 (791)
.. ...++.+. ++++|++++|++... ..+|+|||++|+++++++..
T Consensus 421 ~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~ 470 (549)
T 2a5y_B 421 NEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDA 470 (549)
T ss_dssp ---CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCT
T ss_pred CCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHH
Confidence 54 33444444 999999999998763 35799999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-35 Score=334.26 Aligned_cols=286 Identities=15% Similarity=0.202 Sum_probs=226.1
Q ss_pred cccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCE-EEEEEeCCccCHHHHHHHHHHHhC
Q 038105 50 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDY-VIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..|||+.++++|.++|...++.++|+|+||||+||||||++++++. +....|+. ++|++++..++...++..+++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3599999999999999874467999999999999999999999753 22456875 999999999888888888877543
Q ss_pred CCCC----C-----cccccHHHHHHHHHHHh---CCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 129 LYTD----S-----WKDKRLEEKAQDIFKTL---SKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 129 ~~~~----~-----~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
.... . ....+.++....+.+.+ +++++||||||||+...|+.+ ++|++||||||+..+
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----------~pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----------NLSCKILLTTRFKQV 277 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----------HSSCCEEEECSCSHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----------CCCeEEEEeccChHH
Confidence 2110 0 01123445566666655 789999999999997777653 247999999999888
Q ss_pred HhhccccceEEec------cCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcC-CCHHHH
Q 038105 197 CGRMEDRRMFKVA------CLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYK-KTPEEW 269 (791)
Q Consensus 197 ~~~~~~~~~~~l~------~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~~w 269 (791)
+........++++ +|+++||++||.+.++.. ..+...++ |+|+|+||+++|+.++.+ .+.+.|
T Consensus 278 a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 7544444456777 999999999999985432 12334443 999999999999999986 367778
Q ss_pred HHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhh-hHHHhhhccCCCCcccChHhHHHHHHHcCcccccccchhhhh
Q 038105 270 RYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAI-RSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQG 348 (791)
Q Consensus 270 ~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~-k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~ 348 (791)
+.. ....+..++..||+.||+ .. |.||++||+||+++.++...++.+|+++| ++.+
T Consensus 348 ~~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---------eedA 404 (1221)
T 1vt4_I 348 KHV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---------KSDV 404 (1221)
T ss_dssp HHC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---------SHHH
T ss_pred hcC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---------HHHH
Confidence 652 135899999999999999 77 99999999999999999999999998776 2357
Q ss_pred HHHHHHHHHhcccccc-cCCcEEechHHHHHH
Q 038105 349 YHIVTTLVRACLLEEV-EDDQVKMHDVIRDMA 379 (791)
Q Consensus 349 ~~~l~~L~~~~ll~~~-~~~~~~~h~li~~~~ 379 (791)
..++++|+++||++.. ...+|+||+++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 7889999999999876 457899999998855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-33 Score=351.40 Aligned_cols=313 Identities=20% Similarity=0.255 Sum_probs=250.8
Q ss_pred cCCCcccchHHHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CCCEEEEEEeCCcc--CHHHHHH
Q 038105 46 HTEPTVVGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSKDL--QLEKIQE 121 (791)
Q Consensus 46 ~~~~~~vGR~~~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~--~~~~~~~ 121 (791)
+.++.||||++++++|.++|... ++.++|+|+||||+||||||++++++...... .++.++|++++... .....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 34567999999999999999642 46799999999999999999999987422233 55688899998843 3455567
Q ss_pred HHHHHhCCCCC--CcccccHHHHHHHHHHHhCCc--eEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHH
Q 038105 122 TIGKKIGLYTD--SWKDKRLEEKAQDIFKTLSKK--KFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC 197 (791)
Q Consensus 122 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~ 197 (791)
+++..+..... .......++..+.+...+.++ |+||||||+|+..+++.+ ++|++||||||++.++
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~----------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF----------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT----------CSSCEEEEEESSTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh----------cCCCEEEEEcCCHHHH
Confidence 77777765432 123456788888999999877 999999999987766543 4579999999998887
Q ss_pred hh-ccccceEEecc-CChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHHHHH
Q 038105 198 GR-MEDRRMFKVAC-LSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYAIEV 275 (791)
Q Consensus 198 ~~-~~~~~~~~l~~-l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l~~ 275 (791)
.. ......+++++ |+++||+++|...++... +...+.+++|+++|+|+||||+++|++++.+. ..|...++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~ 344 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQ 344 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHH
Confidence 44 45567899996 999999999999885433 44467799999999999999999999998753 468888888
Q ss_pred HhhhccccC-----CCchhhhhhhhhcccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCcccccccchhhhhHH
Q 038105 276 LRRSASEFE-----GLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQGYH 350 (791)
Q Consensus 276 l~~~~~~~~-----~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~ 350 (791)
+........ ...+.+..++..||+.|++ +.|.||++|++||+++.++...++.+|.++ .+.+..
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~----------~~~~~~ 413 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE----------TEEVED 413 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------HHHHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------HHHHHH
Confidence 876543211 1124699999999999999 899999999999999999999999999543 467788
Q ss_pred HHHHHHHhcccccccCC---cEEechHHHHHHHHHHhh
Q 038105 351 IVTTLVRACLLEEVEDD---QVKMHDVIRDMALWITCE 385 (791)
Q Consensus 351 ~l~~L~~~~ll~~~~~~---~~~~h~li~~~~~~~~~~ 385 (791)
++++|++++|++..... +|+||+++|++++....+
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 99999999999876444 499999999999888654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=8.2e-32 Score=307.64 Aligned_cols=309 Identities=20% Similarity=0.270 Sum_probs=234.1
Q ss_pred cCCCcccchHHHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-CEEEEEEeCCccCHHHHHHH-
Q 038105 46 HTEPTVVGLQSQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQET- 122 (791)
Q Consensus 46 ~~~~~~vGR~~~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~- 122 (791)
+.++.||||+.++++|.++|... ++.++|+|+|+||+||||||++++++.......| +.++|++++... ...+...
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc-hHHHHHHH
Confidence 44667999999999999999752 3578999999999999999999998641103467 489999987652 3333333
Q ss_pred --HHHHhCCCC--CCcccccHHHHHHHHHHHhCC--ceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 123 --IGKKIGLYT--DSWKDKRLEEKAQDIFKTLSK--KKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 123 --i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
++..++... ......+.+.....+.+.+.+ +++||||||+|+...++. .+.+++||||||+..+
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~----------l~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA----------FDSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT----------TCSSCEEEEEESCGGG
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH----------hcCCCeEEEECCCcHH
Confidence 344554211 112344566777778887765 789999999988655543 2457899999999887
Q ss_pred HhhccccceEEe---ccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHHH
Q 038105 197 CGRMEDRRMFKV---ACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYAI 273 (791)
Q Consensus 197 ~~~~~~~~~~~l---~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~l 273 (791)
..... ...+++ ++|+.+|++++|.+.++... ....+.+.+|+++|+|+|+||..+|+.++.. ...|...+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l 342 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYL 342 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHH
Confidence 65433 344555 48999999999999987532 1224578999999999999999999999874 34698888
Q ss_pred HHHhhhccc-c----CCCchhhhhhhhhcccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCcccccccchhhhh
Q 038105 274 EVLRRSASE-F----EGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEAKFGTQNQG 348 (791)
Q Consensus 274 ~~l~~~~~~-~----~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~ 348 (791)
+.+...... + ......+..++..||+.||+ ..|.||+++|+||+++.++...+...|.++ .+.+
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------~~~~ 411 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME----------TEEV 411 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------HHHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC----------HHHH
Confidence 887754321 1 11234789999999999999 899999999999999999999888888532 3456
Q ss_pred HHHHHHHHHhccccccc---CCcEEechHHHHHHHHHH
Q 038105 349 YHIVTTLVRACLLEEVE---DDQVKMHDVIRDMALWIT 383 (791)
Q Consensus 349 ~~~l~~L~~~~ll~~~~---~~~~~~h~li~~~~~~~~ 383 (791)
..++..|++++|+.... ..+|+||++++++++...
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 78899999999997652 247999999999998773
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1e-23 Score=242.04 Aligned_cols=151 Identities=22% Similarity=0.257 Sum_probs=121.7
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 346677788888887665 78889999999888765 47788899999999998888877778888999999999885
Q ss_pred ccccccccccCcccccEEecCCCcccccc-hhhhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCcccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEELP-EELKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
.....|..|+.+++|++|++++|.+..++ ..++++++|++|++++|.+.+ .+|.. ++++++|++|++++|.++..
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec
Confidence 44444778888999999999998888766 568888899999999888743 56765 78888999999988887764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.2e-23 Score=241.42 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=118.1
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. .++++|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|..
T Consensus 16 ~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 45566677777777665 46788888888877664 467788888888888887777777677888888888888754
Q ss_pred cccccccccCcccccEEecCCCccccc-chhhhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
....|..++.+++|++|++++|.++.+ |..++++++|++|++++|.+.+ ..|. +..+++|++|++++|.++..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~--- 168 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYL--- 168 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEE---
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCccccc---
Confidence 445566777888888888888877766 4557777888888888777633 2243 34577788888877776552
Q ss_pred cccchhchHHHhcCCCCCc--EEEEEeech
Q 038105 549 FSSWYENVAEELLGLKHLE--VLEITFRSF 576 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~--~L~l~~~~~ 576 (791)
.+..++.+++|+ .|++++|.+
T Consensus 169 -------~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 169 -------SKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp -------CHHHHHTTTTCCSEEEECTTCCC
T ss_pred -------ChhhhhhhcccceeEEecCCCcc
Confidence 344555666666 555555544
No 7
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.5e-23 Score=229.92 Aligned_cols=344 Identities=17% Similarity=0.121 Sum_probs=236.0
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+..++..+..+| .+..++++++|++++|.+..++ +..+++|++|++++|.+...+ +..+++|++|++++| .
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~ 117 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-K 117 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-C
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-c
Confidence 356777788888886 6888999999999999999886 888999999999999988874 788999999999999 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..+| ++.+++|++|++++|.++.++ ++.+++|+.|++++|...+.++ ++.+++|++|++++|.++.+
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l----- 185 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL----- 185 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-----
T ss_pred CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-----
Confidence 66665 889999999999999998875 7889999999999997667774 67899999999999987662
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCc
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGG 630 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 630 (791)
+ ++.+++|+.|++++|.+...+ ......++.+++..+. ...++ +..+++|++|++++|.+.+.
T Consensus 186 ------~--l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 186 ------D--VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp ------C--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred ------c--cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCc-ccccC---ccccCCCCEEEeeCCcCCCc
Confidence 2 677889999999998887641 1122345555555542 22222 67788899999999988773
Q ss_pred eeecccccccccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcc
Q 038105 631 LKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAK 710 (791)
Q Consensus 631 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~ 710 (791)
| ...+.++..+....++|+.+++++|..+..++ ...+++|+.|++++|..+..++...+ .+........++
T Consensus 249 -~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~-----~L~~L~l~~~~~ 319 (457)
T 3bz5_A 249 -D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAA-----GITELDLSQNPK 319 (457)
T ss_dssp -C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTC-----CCSCCCCTTCTT
T ss_pred -C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCC-----cceEechhhccc
Confidence 3 34455667777777888888888887666655 45678888888888876655543211 111112333445
Q ss_pred cceecccccccccccccCCCCCCCccEEEEcC-----CCCCCCCCCCCCCCCCccEEEEcchhhhhccccCccccccccc
Q 038105 711 LQHLELWGLKSLKSIYWKPLPLPRLKELEVED-----CHSLKKLPLDSNSAKGRRILIRGDEDWWRRLQWEDEATQNAFR 785 (791)
Q Consensus 711 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~-----c~~L~~L~l~~n~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 785 (791)
|+.|.+.++ .++.++ ...+++|+.|++++ +++|..|++++|.+++. +....+..+++..|.+...+|
T Consensus 320 L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 320 LVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred CCEEECCCC-cccccc--cccCCcCcEEECCCCCCCCccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 555555442 233321 23345555554432 23444444444444322 111223445666666665554
Q ss_pred c
Q 038105 786 L 786 (791)
Q Consensus 786 ~ 786 (791)
+
T Consensus 392 ~ 392 (457)
T 3bz5_A 392 P 392 (457)
T ss_dssp T
T ss_pred h
Confidence 4
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.7e-24 Score=252.55 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=82.5
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCC-C-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNL-P-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l-~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...++.+...++.+..+++|++|++++|.+... + .+..+++|++|++++|.+.+..+.. .+++|++|++++|..
T Consensus 204 ~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281 (768)
T ss_dssp EEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEE
T ss_pred EEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCcc
Confidence 34444444444333355555555555555555431 1 3445555555555555544333321 455555555555543
Q ss_pred cccccccccCc-ccccEEecCCCccc-ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcc
Q 038105 471 LQQLPMGISKL-VSLQLLDISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIR 543 (791)
Q Consensus 471 ~~~lp~~~~~l-~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 543 (791)
.+.+|..+..+ ++|++|++++|.++ .+|..++.+++|+.|++++|.+.+.+|...++++++|++|++++|.++
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 34555555543 66666666666665 456666666666666666666655666554566666666666666544
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=8.6e-24 Score=239.70 Aligned_cols=149 Identities=23% Similarity=0.338 Sum_probs=122.2
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.++..+.++..+|..+. +++++|++++|.+..++ .+..+++|++|++++|.+...++..|.++++|++|++++| .
T Consensus 9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~ 85 (549)
T 2z81_A 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-H 85 (549)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-c
Confidence 45667778888887765 78999999999888764 5788899999999999988888777889999999999998 4
Q ss_pred cccccc-cccCcccccEEecCCCcccc--cchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEE--LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
+..+|. .++.+++|++|++++|.++. .|..++++++|+.|++++|...+.+|...++++++|++|++++|.+++
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 555544 48899999999999998884 466788999999999999886677775557889999999999988765
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.5e-24 Score=252.58 Aligned_cols=167 Identities=17% Similarity=0.243 Sum_probs=141.2
Q ss_pred CcccCCCCccCccceeEEEcccCCCCC------------------CCC-CC--CCCCccEEEecCCCCcccchhhhccCC
Q 038105 400 GLTEAPADVRGWEMVRRLSLMRNSIDN------------------LPT-VP--TCPHLLTLFLNDNELTTITDDFFQSMP 458 (791)
Q Consensus 400 ~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------l~~-~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~ 458 (791)
.+..+|..+..+++|+.|++++|.+.. +|. +. .+++|++|++++|.+.+..+..|.+++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC
Confidence 444588889999999999999999988 774 45 899999999999997776667789999
Q ss_pred cccEEeecCcc-ccc-cccccccCcc-------cccEEecCCCcccccch--hhhcCCCCceeeccCcccccccchhHhh
Q 038105 459 CLTVLKMSDIR-MLQ-QLPMGISKLV-------SLQLLDISNTEVEELPE--ELKALVNLKCLNLDWTDVLVEVPQQLLS 527 (791)
Q Consensus 459 ~L~~L~l~~~~-~~~-~lp~~~~~l~-------~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 527 (791)
+|++|++++|+ ..+ .+|..++.++ +|++|++++|.++.+|. .++++++|+.|++++|.+ ..+| . ++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~ 592 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FG 592 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hc
Confidence 99999999996 334 5888777766 99999999999999998 899999999999999988 4888 3 79
Q ss_pred cCcCCCeeeeeecCccccccccccchhchHHHhcCCCC-CcEEEEEeechhhHH
Q 038105 528 NFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKH-LEVLEITFRSFEAYQ 580 (791)
Q Consensus 528 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~ 580 (791)
++++|++|++++|.++. +|..+..+++ |+.|++++|.+..++
T Consensus 593 ~L~~L~~L~Ls~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEE-----------IPEDFCAFTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp TTSEESEEECCSSCCSC-----------CCTTSCEECTTCCEEECCSSCCCSCC
T ss_pred CCCcceEEECcCCcccc-----------chHHHhhccccCCEEECcCCCCCcCc
Confidence 99999999999998764 4556778888 999999888876543
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=4.6e-23 Score=229.14 Aligned_cols=299 Identities=23% Similarity=0.303 Sum_probs=216.1
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+.++..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n- 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN- 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-
Confidence 346667788889988765 68999999999998875 5789999999999999999988888999999999999999
Q ss_pred ccccccc-cccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccc
Q 038105 470 MLQQLPM-GISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYG 547 (791)
Q Consensus 470 ~~~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 547 (791)
.+..+|. .++.+++|++|++++|.+..+ |..+..+++|+.|++++|.+ ..++...+.++++|++|++++|.++.+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 167 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSI-- 167 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSC--
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCccc--
Confidence 5667765 478999999999999999865 56789999999999999987 445444478999999999999987763
Q ss_pred ccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCC
Q 038105 548 RFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGW 627 (791)
Q Consensus 548 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 627 (791)
.+..+..+++|+.|++++|.+.... ...+..+++|++|++++|..
T Consensus 168 --------~~~~l~~l~~L~~L~l~~n~i~~~~---------------------------~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 168 --------PTEALSHLHGLIVLRLRHLNINAIR---------------------------DYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp --------CHHHHTTCTTCCEEEEESCCCCEEC---------------------------TTCSCSCTTCCEEEEECCTT
T ss_pred --------ChhHhcccCCCcEEeCCCCcCcEeC---------------------------hhhcccCcccceeeCCCCcc
Confidence 3467899999999999998775422 12455667777777777776
Q ss_pred CCceeecccccccccccccccCCCCEEEEecCCCccccc--chhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccC
Q 038105 628 SGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLT--FLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIIS 705 (791)
Q Consensus 628 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~--~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~ 705 (791)
.+.++..... ..+|+.|.++++ .++.++ .+..+++|+.|+++++. ++.+. ....
T Consensus 213 ~~~~~~~~~~----------~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~------------~~~~ 268 (477)
T 2id5_A 213 LDTMTPNCLY----------GLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIE------------GSML 268 (477)
T ss_dssp CCEECTTTTT----------TCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEEC------------TTSC
T ss_pred ccccCccccc----------CccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccC------------hhhc
Confidence 6655544332 236777777766 355554 35566777777777664 22221 1223
Q ss_pred CcCcccceeccccccccccc-ccCCCCCCCccEEEEcC-------------CCCCCCCCCCCCCC
Q 038105 706 SPFAKLQHLELWGLKSLKSI-YWKPLPLPRLKELEVED-------------CHSLKKLPLDSNSA 756 (791)
Q Consensus 706 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~-------------c~~L~~L~l~~n~~ 756 (791)
..+++|+.|.+.++. +..+ +.....+++|+.|++++ |++|+.|++++|++
T Consensus 269 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 269 HELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred cccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 445566666666543 3332 22334556666666544 34566666666654
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.3e-23 Score=221.36 Aligned_cols=234 Identities=18% Similarity=0.258 Sum_probs=114.6
Q ss_pred CccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 410 GWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
.+++++.|+++++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEEC
Confidence 344555555555555555555555555555555555554444 455555555555555 344443 3555555555555
Q ss_pred CCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEE
Q 038105 490 SNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVL 569 (791)
Q Consensus 490 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 569 (791)
++|.+..++. +..+++|+.|++++|.....++. +..+++|++|++++|.+... + .+..+++|+.|
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------~-~~~~l~~L~~L 182 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------T-PIANLTDLYSL 182 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------G-GGGGCTTCSEE
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------h-hhccCCCCCEE
Confidence 5555555543 55555555555555544344433 45555555555555554331 1 14455555555
Q ss_pred EEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccC
Q 038105 570 EITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFR 649 (791)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 649 (791)
++++|.+.....+ .....++.+.+..+.- ... ..+..+++|++|++++|.+.+. ++ + ..++
T Consensus 183 ~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l-~~~--~~~~~~~~L~~L~l~~n~l~~~-~~-~----------~~l~ 243 (347)
T 4fmz_A 183 SLNYNQIEDISPL----ASLTSLHYFTAYVNQI-TDI--TPVANMTRLNSLKIGNNKITDL-SP-L----------ANLS 243 (347)
T ss_dssp ECTTSCCCCCGGG----GGCTTCCEEECCSSCC-CCC--GGGGGCTTCCEEECCSSCCCCC-GG-G----------TTCT
T ss_pred EccCCcccccccc----cCCCccceeecccCCC-CCC--chhhcCCcCCEEEccCCccCCC-cc-h----------hcCC
Confidence 5555544433220 1112222333322211 111 1144555666666666655441 11 1 1244
Q ss_pred CCCEEEEecCCCcccccchhcCCCCceEEEccC
Q 038105 650 SLDKITVSSCRNLKHLTFLVFAPNLKSISVTHC 682 (791)
Q Consensus 650 ~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c 682 (791)
+|+.|.++++ .+..++.+..+++|+.|++++|
T Consensus 244 ~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 244 QLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp TCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCCChhHhcCCCcCEEEccCC
Confidence 5555555555 3444445555556666666555
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=8.6e-25 Score=250.74 Aligned_cols=220 Identities=13% Similarity=0.172 Sum_probs=175.5
Q ss_pred CcccCCCCccCccceeEEEcccCCCCC------------------CC-CCC--CCCCccEEEecCCCCcccchhhhccCC
Q 038105 400 GLTEAPADVRGWEMVRRLSLMRNSIDN------------------LP-TVP--TCPHLLTLFLNDNELTTITDDFFQSMP 458 (791)
Q Consensus 400 ~~~~~~~~~~~~~~l~~l~l~~~~~~~------------------l~-~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~ 458 (791)
.+..+|..+..+++|++|++++|.+.. +| .+. .+++|++|++++|.+.+..+..|.+++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 455588889999999999999999988 77 466 899999999999998777777799999
Q ss_pred cccEEeecCcc-ccc-cccccccCc------ccccEEecCCCcccccch--hhhcCCCCceeeccCcccccccchhHhhc
Q 038105 459 CLTVLKMSDIR-MLQ-QLPMGISKL------VSLQLLDISNTEVEELPE--ELKALVNLKCLNLDWTDVLVEVPQQLLSN 528 (791)
Q Consensus 459 ~L~~L~l~~~~-~~~-~lp~~~~~l------~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~ 528 (791)
+|++|++++|+ ..+ .+|..++.+ ++|++|++++|.++.+|. .++++++|+.|++++|.+.+.+| . ++.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCC
Confidence 99999999996 444 689888887 999999999999999998 89999999999999999877999 3 899
Q ss_pred CcCCCeeeeeecCccccccccccchhchHHHhcCCCC-CcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCccc
Q 038105 529 FSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKH-LEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESID 607 (791)
Q Consensus 529 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 607 (791)
+++|++|++++|.++. +|..+..+++ |+.|++++|.+..++..+... ....++.+++..+.- ....
T Consensus 352 l~~L~~L~L~~N~l~~-----------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~-~l~~L~~L~Ls~N~l-~~~~ 418 (636)
T 4eco_A 352 EIKLASLNLAYNQITE-----------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAK-SVSVMSAIDFSYNEI-GSVD 418 (636)
T ss_dssp EEEESEEECCSSEEEE-----------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTT-CSSCEEEEECCSSCT-TTTT
T ss_pred CCCCCEEECCCCcccc-----------ccHhhhhhcccCcEEEccCCcCcccchhhhhc-ccCccCEEECcCCcC-CCcc
Confidence 9999999999998764 5667888999 999999999887544321110 011355566655432 2222
Q ss_pred ccccc-------cccccceEEecccCCCCceeecc
Q 038105 608 VADLA-------NLEQLNTLYFRSCGWSGGLKIDY 635 (791)
Q Consensus 608 ~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~ 635 (791)
+..+. .+++|++|++++|.+.+ +|..+
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~ 452 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISK-FPKEL 452 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHH
T ss_pred hhhhcccccccccCCCCCEEECcCCccCc-CCHHH
Confidence 23444 66789999999998874 56544
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.7e-23 Score=245.78 Aligned_cols=352 Identities=20% Similarity=0.165 Sum_probs=172.9
Q ss_pred CccceeEEEcccCCCC-CCCC-CCC-CCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc-ccCccccc
Q 038105 410 GWEMVRRLSLMRNSID-NLPT-VPT-CPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQ 485 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~-~l~~-~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~ 485 (791)
.++++++|++++|.+. .+|. +.. +++|++|++++|.+.+..+..|..+++|++|++++|...+.+|.. ++.+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 3445555555555443 2331 222 245555555555544444444445555555555555333344433 44455555
Q ss_pred EEecCCCccc-ccchhhhcC---------------------------CCCceeeccCcccccccchhHhhcCcCCCeeee
Q 038105 486 LLDISNTEVE-ELPEELKAL---------------------------VNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRM 537 (791)
Q Consensus 486 ~L~L~~~~l~-~lp~~~~~l---------------------------~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 537 (791)
+|++++|.+. .+|..+..+ ++|+.|++++|.+.+.+|.. ++++++|++|++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEEC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEEC
Confidence 5555555444 444444444 44444444444443344443 345555555555
Q ss_pred eecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCccccccccccccc
Q 038105 538 FATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQL 617 (791)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L 617 (791)
++|.+++ .+|..++.+++|+.|++++|.+.+.. .........++.+++..+.- ....+..+.++++|
T Consensus 426 s~N~l~~----------~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 426 SFNYLSG----------TIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNL 492 (768)
T ss_dssp CSSEEES----------CCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTC
T ss_pred cCCcccC----------cccHHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcc-cCcCCHHHhcCCCC
Confidence 5554332 23444555555666666555543210 01111123344444444322 21223455666666
Q ss_pred ceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCccccc-chhcCCCCceEEEccCcchhHHhhcCCCC-
Q 038105 618 NTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLT-FLVFAPNLKSISVTHCDDMEEIISAGEFD- 695 (791)
Q Consensus 618 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~-~l~~~~nL~~L~l~~c~~L~~l~~~~~~~- 695 (791)
++|++++|.+.+.+|..++. +++|+.|+++++.-...++ .+..+++|+.|++++|+--..++......
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~----------l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGR----------LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGG----------CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTT
T ss_pred CEEEccCCccCCcCChHHhc----------CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhccc
Confidence 66666666666655555443 4566677777664332333 46677888888887764221111100000
Q ss_pred -----------------------------------------------------CCCCccccc---CCcCcccceeccccc
Q 038105 696 -----------------------------------------------------DIPEMTGII---SSPFAKLQHLELWGL 719 (791)
Q Consensus 696 -----------------------------------------------------~~~~l~~~~---~~~~~~L~~L~l~~~ 719 (791)
....+.|.. .+.+++|+.|+++++
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp TCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS
T ss_pred chhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC
Confidence 000011111 123455666666665
Q ss_pred ccccccccCCCCCCCccEEEEcC-------------CCCCCCCCCCCCCCCCccEEEEcchhhhhccccCccccccccc
Q 038105 720 KSLKSIYWKPLPLPRLKELEVED-------------CHSLKKLPLDSNSAKGRRILIRGDEDWWRRLQWEDEATQNAFR 785 (791)
Q Consensus 720 ~~l~~~~~~~~~~~~L~~L~i~~-------------c~~L~~L~l~~n~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 785 (791)
.--..++.....+++|+.|++++ +++|+.|++++|.+++...........++.++..+|.+...+|
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence 43335555556677777776654 4567777777777765443333444456666777776665543
No 15
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.2e-23 Score=230.68 Aligned_cols=317 Identities=16% Similarity=0.154 Sum_probs=229.6
Q ss_pred CCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCccccc
Q 038105 406 ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQ 485 (791)
Q Consensus 406 ~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 485 (791)
..+..++++++|++++|.+..+|.+..+++|++|++++|.+..++ ++.+++|++|++++| .+..+| ++.+++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 356678899999999999999998899999999999999998874 789999999999999 566665 89999999
Q ss_pred EEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCC
Q 038105 486 LLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKH 565 (791)
Q Consensus 486 ~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 565 (791)
+|++++|.++.+| ++.+++|+.|++++|.+ ..++ ++.+++|++|++++|...+ .+ .++.+++
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n~~~~----------~~--~~~~l~~ 171 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLNKKIT----------KL--DVTPQTQ 171 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTCSCCC----------CC--CCTTCTT
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCCCccc----------cc--ccccCCc
Confidence 9999999999886 89999999999999987 5565 6899999999999995322 12 3678899
Q ss_pred CcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccc
Q 038105 566 LEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQP 645 (791)
Q Consensus 566 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~ 645 (791)
|+.|++++|.+..++ ......++.+++..+. .... .+..+++|++|++++|.+.+ +| +..+
T Consensus 172 L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l------- 232 (457)
T 3bz5_A 172 LTTLDCSFNKITELD-----VSQNKLLNRLNCDTNN-ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPL------- 232 (457)
T ss_dssp CCEEECCSSCCCCCC-----CTTCTTCCEEECCSSC-CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTC-------
T ss_pred CCEEECCCCccceec-----cccCCCCCEEECcCCc-CCee---ccccCCCCCEEECcCCcccc-cC--cccc-------
Confidence 999999999887753 1122345566665442 2222 37788999999999999887 54 4443
Q ss_pred cccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccc-cCCcCcccceecccccccccc
Q 038105 646 YVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGI-ISSPFAKLQHLELWGLKSLKS 724 (791)
Q Consensus 646 ~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~~l~~ 724 (791)
++|+.|.++++ .++.++ +..+++|+.|+++++ +|+.++.+.|. +.+. ..+.+++|+.|.+.+|..+..
T Consensus 233 ---~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~-----~~~~~~~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 233 ---TQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNT-----QLIYFQAEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp ---TTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCT-----TCCEEECTTCTTCCCCCCTTCTTCCE
T ss_pred ---CCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCCCc-----cCCcccccccccCCEEECCCCcccce
Confidence 44555555544 233332 344555555555543 35555444442 1111 134568888888888877766
Q ss_pred cccCCCCCCCccEEEEcCCCCCCCCCCCCCCCCCccEEEEcchhhhhccccCcccccc
Q 038105 725 IYWKPLPLPRLKELEVEDCHSLKKLPLDSNSAKGRRILIRGDEDWWRRLQWEDEATQN 782 (791)
Q Consensus 725 ~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 782 (791)
++. ..++|+.|++++|++|+.|++++|.++.- .+..++ .++.++..+|.+..
T Consensus 302 l~~---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~-~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 302 LDC---QAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNT-KLKSLSCVNAHIQD 353 (457)
T ss_dssp EEC---TTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCT-TCSEEECCSSCCCB
T ss_pred ecc---CCCcceEechhhcccCCEEECCCCccccc--ccccCC-cCcEEECCCCCCCC
Confidence 663 45677777888888888888888887653 343333 45666666666554
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7.4e-23 Score=234.90 Aligned_cols=152 Identities=19% Similarity=0.259 Sum_probs=115.9
Q ss_pred ccEEEEcCCCcccCCC-CccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAPA-DVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..+..+++.+..++. .+..+++|++|++++|.+..++ .+..+++|++|++++|.+...++..|.++++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 3556777777777765 6778889999999998888764 467889999999999988888777788899999999998
Q ss_pred cccccccc-ccccCcccccEEecCCCccc--ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCC----eeeeeec
Q 038105 468 IRMLQQLP-MGISKLVSLQLLDISNTEVE--ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLR----VLRMFAT 540 (791)
Q Consensus 468 ~~~~~~lp-~~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~----~L~l~~~ 540 (791)
| .+..+| ..++.+++|++|++++|.+. .+|..++++++|++|++++|.+.+ ++...++.+++|+ +|++++|
T Consensus 114 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 114 T-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp S-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTC
T ss_pred C-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCC
Confidence 8 444444 67888999999999999887 478888899999999999887743 4333355555444 5666666
Q ss_pred Cccc
Q 038105 541 GIRS 544 (791)
Q Consensus 541 ~~~~ 544 (791)
.++.
T Consensus 192 ~l~~ 195 (606)
T 3vq2_A 192 PIDF 195 (606)
T ss_dssp CCCE
T ss_pred Ccce
Confidence 6554
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=3.9e-23 Score=237.25 Aligned_cols=153 Identities=15% Similarity=0.146 Sum_probs=121.4
Q ss_pred ccEEEEcCCCcccC-CCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEA-PADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..+..+++.+..+ |..+..+++|++|++++|.+..+. .+..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 35677778888777 457888999999999999887653 478899999999999998888887789999999999999
Q ss_pred ccccccc-cccccCcccccEEecCCCcccccc-hhhhcCCCCceeeccCcccccccchhHhhcCcCCC--eeeeeecCcc
Q 038105 468 IRMLQQL-PMGISKLVSLQLLDISNTEVEELP-EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLR--VLRMFATGIR 543 (791)
Q Consensus 468 ~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~--~L~l~~~~~~ 543 (791)
| .+..+ |..++.+++|++|++++|.+..++ ..+..+++|+.|++++|.+ ..+++..++.+++|+ +|++++|.++
T Consensus 115 n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 115 T-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI-HYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp S-CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC-CEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred c-CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc-cccChhhhhhhcccceeEEecCCCccC
Confidence 8 45444 667889999999999999888652 2344588999999999887 455444478888888 7888888766
Q ss_pred cc
Q 038105 544 SV 545 (791)
Q Consensus 544 ~~ 545 (791)
..
T Consensus 193 ~~ 194 (606)
T 3t6q_A 193 GI 194 (606)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=234.34 Aligned_cols=148 Identities=21% Similarity=0.279 Sum_probs=73.3
Q ss_pred EEEcCCCcccCCC-CccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 394 LVYAGSGLTEAPA-DVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 394 ~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
+..+++.+..++. .+..++++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 111 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-N 111 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-c
Confidence 3444444444322 3444555555555555554443 2445555555555555555555444555555555555555 3
Q ss_pred cccccc-cccCcccccEEecCCCcccc--cchhhhcCCCCceeeccCcccccccchhHhhcCcCC----CeeeeeecCcc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEE--LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRL----RVLRMFATGIR 543 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L----~~L~l~~~~~~ 543 (791)
+..+|. .++.+++|++|++++|.++. +|..++++++|++|++++|.+ ..++...++.+++| ++|++++|.+.
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~ 190 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCce
Confidence 333332 35555555555555555543 455555555555555555554 22322224444444 44555444433
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.3e-22 Score=212.36 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=227.6
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+...+..+..+| .+..++++++|++++|.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++| .
T Consensus 46 L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n-~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNED-N 121 (347)
T ss_dssp CSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTS-C
T ss_pred ccEEEEeCCccccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCC-c
Confidence 356777788888884 58889999999999999998888899999999999999988764 3889999999999999 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..+|. +..+++|++|++++|.....+..+..+++|+.|++++|.+ ..++. +..+++|++|++++|.+...
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~~----- 192 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP--IANLTDLYSLSLNYNQIEDI----- 192 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECTTSCCCCC-----
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh--hccCCCCCEEEccCCccccc-----
Confidence 666665 8899999999999996554445589999999999999987 56665 78999999999999987653
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCc
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGG 630 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 630 (791)
+. +..+++|+.|++++|.+..... ......++.+++..+.- .... .+..+++|++|++++|.+.+
T Consensus 193 ------~~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l-~~~~--~~~~l~~L~~L~l~~n~l~~- 257 (347)
T 4fmz_A 193 ------SP-LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKI-TDLS--PLANLSQLTWLEIGTNQISD- 257 (347)
T ss_dssp ------GG-GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CCCG--GGTTCTTCCEEECCSSCCCC-
T ss_pred ------cc-ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCcc-CCCc--chhcCCCCCEEECCCCccCC-
Confidence 22 7788999999999988776543 22234566677766532 2222 27889999999999998776
Q ss_pred eeecccccccccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcc
Q 038105 631 LKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAK 710 (791)
Q Consensus 631 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~ 710 (791)
+ +.+ ..+++|+.|.+++| .++.++.+..+++|+.|++++|. ++.... .....+++
T Consensus 258 ~-~~~----------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~l~~l~~ 312 (347)
T 4fmz_A 258 I-NAV----------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM------------EVIGGLTN 312 (347)
T ss_dssp C-GGG----------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH------------HHHHTCTT
T ss_pred C-hhH----------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh------------hHhhcccc
Confidence 2 222 24678999999988 67778888899999999999985 332221 22346789
Q ss_pred cceecccccccccccccCCCCCCCccEEEEcCCCCCCCCCCCCCCC
Q 038105 711 LQHLELWGLKSLKSIYWKPLPLPRLKELEVEDCHSLKKLPLDSNSA 756 (791)
Q Consensus 711 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~ 756 (791)
|+.|.+.+|. +..++. +.+|++|+.|++++|.+
T Consensus 313 L~~L~L~~n~-l~~~~~------------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDIRP------------LASLSKMDSADFANQVI 345 (347)
T ss_dssp CSEEECCSSS-CCCCGG------------GGGCTTCSEESSSCC--
T ss_pred CCEEEccCCc-cccccC------------hhhhhccceeehhhhcc
Confidence 9999999875 443332 34556666666666654
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=4.8e-23 Score=234.81 Aligned_cols=151 Identities=25% Similarity=0.278 Sum_probs=130.7
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 456667788889988665 68999999999998876 57899999999999999999988889999999999999995
Q ss_pred ccccccccccCcccccEEecCCCcccccch-hhhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCcccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
.....|..|+.+++|++|++++|.++.+|. .++.+++|++|++++|.+.. .+|.. ++++++|++|++++|.++..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCcccee
Confidence 334445689999999999999999998876 59999999999999998744 46776 79999999999999998764
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.7e-23 Score=229.72 Aligned_cols=175 Identities=22% Similarity=0.342 Sum_probs=140.8
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCc-ccchhhhccCCcccEEeecCc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELT-TITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~ 468 (791)
..+...+.++..+|. +. +++++|++++|.+..++ .+..+++|++|++++|.+. .+++..|.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 346667778888876 33 78999999999998763 5789999999999999876 566677899999999999999
Q ss_pred cccccccccccCcccccEEecCCCcccc-cchh--hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEE-LPEE--LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
......|..++.+++|++|++++|.++. +|.. ++.+++|++|++++|.+.+..|..+++++++|++|++++|.++..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 6555568889999999999999999984 4554 899999999999999985555766578999999999999997764
Q ss_pred ccccccchhchHHHhcCC--CCCcEEEEEeechhhH
Q 038105 546 YGRFSSWYENVAEELLGL--KHLEVLEITFRSFEAY 579 (791)
Q Consensus 546 ~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~ 579 (791)
. +..+..+ .+|+.|+++.|.+...
T Consensus 170 ~----------~~~l~~l~~~~L~~L~l~~n~l~~~ 195 (455)
T 3v47_A 170 C----------EEDLLNFQGKHFTLLRLSSITLQDM 195 (455)
T ss_dssp C----------TTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred C----------hhhhhccccccccccccccCccccc
Confidence 2 2333333 5677888877776553
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=7.9e-23 Score=229.99 Aligned_cols=143 Identities=20% Similarity=0.243 Sum_probs=126.5
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
.+.+..++.++..+|..+. +++++|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 2 ~~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred cceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 3567888999999998776 89999999999999886 4789999999999999999998888999999999999999
Q ss_pred cccccccccccCcccccEEecCCCcccc--cchhhhcCCCCceeeccCcccccccchhHhhcCcCC--CeeeeeecCc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEE--LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRL--RVLRMFATGI 542 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L--~~L~l~~~~~ 542 (791)
.+..+|.. .+++|++|++++|.++. +|..++.+++|++|++++|.+.+ . .+..+++| ++|++++|.+
T Consensus 80 -~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 -KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-S---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp -CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-G---GGGGGTTSCEEEEEEEECTT
T ss_pred -ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-h---hccccccceeeEEEeecccc
Confidence 67788876 89999999999999985 57899999999999999998743 2 26788888 9999999987
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.9e-22 Score=234.71 Aligned_cols=173 Identities=20% Similarity=0.271 Sum_probs=142.0
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+..++.++..+|..+. .++++|++++|.+..++. +..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-
Confidence 456777888889987765 789999999999988873 788999999999999999998888999999999999999
Q ss_pred ccccccc-cccCcccccEEecCCCcccccc-hhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccc
Q 038105 470 MLQQLPM-GISKLVSLQLLDISNTEVEELP-EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYG 547 (791)
Q Consensus 470 ~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 547 (791)
.+..+|. .|+.+++|++|++++|.+..+| ..++++++|++|++++|.+.+..|.. ++++++|++|++++|.++..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~-- 160 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQAL-- 160 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCB--
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCccccc--
Confidence 6667776 5999999999999999998776 56899999999999999885544443 78999999999999987663
Q ss_pred ccccchhchHHHhc--CCCCCcEEEEEeechhh
Q 038105 548 RFSSWYENVAEELL--GLKHLEVLEITFRSFEA 578 (791)
Q Consensus 548 ~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~ 578 (791)
.+..+. .+++|+.|++++|.+..
T Consensus 161 --------~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 161 --------KSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp --------CHHHHGGGTTCEESEEECTTCCCCC
T ss_pred --------CHHHhhccccccccEEECCCCcccc
Confidence 223332 45678888887776543
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.4e-22 Score=218.94 Aligned_cols=281 Identities=13% Similarity=0.165 Sum_probs=201.6
Q ss_pred CccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 410 GWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
.+.++++++++++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|++++|......|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35788899999988888875 5678889999999998888887778889999999999884433445568889999999
Q ss_pred ecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCC
Q 038105 488 DISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHL 566 (791)
Q Consensus 488 ~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 566 (791)
++++|.++.+|.. ++.+++|++|++++|.+ ..+++..++++++|++|++++|.++.. .++.+++|
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~l~~L 188 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV-------------DLSLIPSL 188 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBC-------------CGGGCTTC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCcc-------------cccccccc
Confidence 9999988888876 58889999999998887 455544478889999999999887653 24567788
Q ss_pred cEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccccccccccc
Q 038105 567 EVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPY 646 (791)
Q Consensus 567 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 646 (791)
+.|++++|.+..+. ....++.+++..+.- .... ....++|++|++++|.+.+. +.+.
T Consensus 189 ~~L~l~~n~l~~~~-------~~~~L~~L~l~~n~l-~~~~---~~~~~~L~~L~l~~n~l~~~--~~l~---------- 245 (390)
T 3o6n_A 189 FHANVSYNLLSTLA-------IPIAVEELDASHNSI-NVVR---GPVNVELTILKLQHNNLTDT--AWLL---------- 245 (390)
T ss_dssp SEEECCSSCCSEEE-------CCSSCSEEECCSSCC-CEEE---CCCCSSCCEEECCSSCCCCC--GGGG----------
T ss_pred ceeecccccccccC-------CCCcceEEECCCCee-eecc---ccccccccEEECCCCCCccc--HHHc----------
Confidence 88888888765432 223445555544321 1111 12346899999999887762 2332
Q ss_pred ccCCCCEEEEecCCCcccc--cchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccccc
Q 038105 647 VFRSLDKITVSSCRNLKHL--TFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKS 724 (791)
Q Consensus 647 ~~~~L~~L~l~~~~~L~~l--~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 724 (791)
.+++|+.|+++++. +... ..+..+++|+.|+++++. ++.++ .....+++|+.|.+.++ .+..
T Consensus 246 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 246 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALN-------------LYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSC-CCEEE-------------CSSSCCTTCCEEECCSS-CCCC
T ss_pred CCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCc-CcccC-------------cccCCCCCCCEEECCCC-ccee
Confidence 35677777777763 3333 346678889999998874 33321 12346789999999987 4666
Q ss_pred cccCCCCCCCccEEEEcCC
Q 038105 725 IYWKPLPLPRLKELEVEDC 743 (791)
Q Consensus 725 ~~~~~~~~~~L~~L~i~~c 743 (791)
++.....+++|+.|++++|
T Consensus 310 ~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 310 VERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CGGGHHHHTTCSEEECCSS
T ss_pred cCccccccCcCCEEECCCC
Confidence 6655556788999888765
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=5.9e-22 Score=219.07 Aligned_cols=318 Identities=16% Similarity=0.243 Sum_probs=182.3
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRML 471 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 471 (791)
..+...+..+..+| .+..++++++|++++|.+..++.+..+++|++|++++|.+...++ +..+++|++|++++| .+
T Consensus 49 ~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l 124 (466)
T 1o6v_A 49 TTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QI 124 (466)
T ss_dssp CEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred cEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CC
Confidence 44555666666664 466777888888888888777777778888888888888777665 778888888888887 55
Q ss_pred ccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccccccc
Q 038105 472 QQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSS 551 (791)
Q Consensus 472 ~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 551 (791)
..+|. ++.+++|++|++++|.+..++ .++.+++|+.|+++++ . ..++. ++++++|++|++++|.++..
T Consensus 125 ~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~-~-~~~~~--~~~l~~L~~L~l~~n~l~~~------ 192 (466)
T 1o6v_A 125 TDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ-V-TDLKP--LANLTTLERLDISSNKVSDI------ 192 (466)
T ss_dssp CCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES-C-CCCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred CCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc-c-cCchh--hccCCCCCEEECcCCcCCCC------
Confidence 55654 777888888888888777665 3666667777766532 2 33333 56666777777766665442
Q ss_pred chhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCce
Q 038105 552 WYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGL 631 (791)
Q Consensus 552 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 631 (791)
..+..+++|+.|++++|.+..... ......++.+++..+.- .. ...+..+++|++|++++|.+.+..
T Consensus 193 ------~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l-~~--~~~l~~l~~L~~L~l~~n~l~~~~ 259 (466)
T 1o6v_A 193 ------SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQL-KD--IGTLASLTNLTDLDLANNQISNLA 259 (466)
T ss_dssp ------GGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CGGGGGCTTCSEEECCSSCCCCCG
T ss_pred ------hhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCc-cc--chhhhcCCCCCEEECCCCccccch
Confidence 124555666666666665544322 11123344444443321 11 123445556666666665554421
Q ss_pred eecccccccccccc------------cccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCC
Q 038105 632 KIDYKDMVQKSRQP------------YVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPE 699 (791)
Q Consensus 632 ~~~~~~~~~l~~l~------------~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~ 699 (791)
+ +..+.++..+. ..+++|+.|.++++ .+..++.+..+++|+.|++++|. ++.+
T Consensus 260 ~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~----------- 324 (466)
T 1o6v_A 260 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDI----------- 324 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCC-----------
T ss_pred h--hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCc-----------
Confidence 1 22211111111 12344555555554 34444445555566666665553 1111
Q ss_pred cccccCCcCcccceecccccccccccccCCCCCCCccEEEEcCC-----------CCCCCCCCCCCCCCC
Q 038105 700 MTGIISSPFAKLQHLELWGLKSLKSIYWKPLPLPRLKELEVEDC-----------HSLKKLPLDSNSAKG 758 (791)
Q Consensus 700 l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c-----------~~L~~L~l~~n~~~~ 758 (791)
.....+++|+.|.+.++ .+..++ ....+++|+.|++++| ++|+.|.+++|.++.
T Consensus 325 ---~~~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 325 ---SPVSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ---GGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred ---hhhccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 01345677777777765 344442 2345677777776654 455555555555443
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.8e-22 Score=234.89 Aligned_cols=287 Identities=17% Similarity=0.158 Sum_probs=178.1
Q ss_pred ccEEEEcCCCcccCCC-CccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAPA-DVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..+..+++.+..+|. .+..++++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 3556777777777765 47788888888888888877642 56788888888888888888877788888888888888
Q ss_pred cccccccc-ccccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHhh--cCcCCCeeeeeecCcc
Q 038105 468 IRMLQQLP-MGISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLS--NFSRLRVLRMFATGIR 543 (791)
Q Consensus 468 ~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~--~l~~L~~L~l~~~~~~ 543 (791)
|. +..+| ..++.+++|++|++++|.++.. |..++++++|++|++++|.+ ..++...++ .+++|++|++++|.++
T Consensus 107 n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 107 NS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp SC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred Cc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhccccccccEEECCCCccc
Confidence 84 44444 5688888888888888888754 45578888888888888877 444433333 4578888888888776
Q ss_pred ccccccccc------------------hhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCc
Q 038105 544 SVYGRFSSW------------------YENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREES 605 (791)
Q Consensus 544 ~~~~~~~~~------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 605 (791)
......... ...++..+ ..++|+.|++++|.+.+.....-.......++.+++..+. ...
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~ 262 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNV 262 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCE
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCc
Confidence 532210000 00011111 2245666666655543321100000001225555555443 223
Q ss_pred ccccccccccccceEEecccCCCCceeeccccccccccccc-----------------------ccCCCCEEEEecCCCc
Q 038105 606 IDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPY-----------------------VFRSLDKITVSSCRNL 662 (791)
Q Consensus 606 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-----------------------~~~~L~~L~l~~~~~L 662 (791)
..+..+..+++|++|++++|.+.+..+..+..+.++..+.. .+.+|+.|.++++. +
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l 341 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-I 341 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-B
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-c
Confidence 33345677778888888887776654545555444433222 24566777776653 3
Q ss_pred cccc--chhcCCCCceEEEccC
Q 038105 663 KHLT--FLVFAPNLKSISVTHC 682 (791)
Q Consensus 663 ~~l~--~l~~~~nL~~L~l~~c 682 (791)
..+. .+..+++|+.|++++|
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTC
T ss_pred CCCChhHhccccCCcEEECCCC
Confidence 3322 2455677777777665
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=240.72 Aligned_cols=151 Identities=20% Similarity=0.252 Sum_probs=124.8
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCC-CcccchhhhccCCcccEEeecCc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNE-LTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
..+..++.++..+|. ..++++.|++++|.+..+. .+..+++|++|++++|. ...+++..|.++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 466778888999987 4579999999999998764 67899999999999995 45665777899999999999999
Q ss_pred cccccccccccCcccccEEecCCCcccc-cchh--hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEE-LPEE--LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
......|..|+.+++|++|+|++|.+.. +|.. ++++++|++|++++|.+.+..+...++++++|++|++++|.++..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 5555568889999999999999999884 5655 889999999999999885544434478999999999999987653
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.1e-22 Score=236.85 Aligned_cols=319 Identities=15% Similarity=0.166 Sum_probs=219.2
Q ss_pred ccEEEEcCCCccc------------------CCCCcc--CccceeEEEcccCCCC-CCC-CCCCCCCccEEEecCCC-Cc
Q 038105 391 EGFLVYAGSGLTE------------------APADVR--GWEMVRRLSLMRNSID-NLP-TVPTCPHLLTLFLNDNE-LT 447 (791)
Q Consensus 391 ~~~~~~~~~~~~~------------------~~~~~~--~~~~l~~l~l~~~~~~-~l~-~~~~l~~L~~L~l~~~~-~~ 447 (791)
-..+..+++.+.. +|..+. .+++|++|++++|.+. .+| .+..+++|++|++++|. ++
T Consensus 450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ls 529 (876)
T 4ecn_A 450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529 (876)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcc
Confidence 4577888888888 999988 9999999999999864 456 47889999999999998 87
Q ss_pred c-cchhhhcc-------CCcccEEeecCccccccccc--cccCcccccEEecCCCcccccchhhhcCCCCceeeccCccc
Q 038105 448 T-ITDDFFQS-------MPCLTVLKMSDIRMLQQLPM--GISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 448 ~-~~~~~~~~-------l~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~ 517 (791)
+ ..|..+.. +++|++|++++| .+..+|. .++.+++|++|++++|.++.+| .++.+++|+.|++++|.+
T Consensus 530 g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 530 AAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQI 607 (876)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCC
T ss_pred cccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCcc
Confidence 6 34433444 459999999999 5669998 8999999999999999999999 899999999999999998
Q ss_pred ccccchhHhhcCcC-CCeeeeeecCccccccccccchhchHHHhcCCC--CCcEEEEEeechhhHH-Hhhhccc--ccCC
Q 038105 518 LVEVPQQLLSNFSR-LRVLRMFATGIRSVYGRFSSWYENVAEELLGLK--HLEVLEITFRSFEAYQ-TFLSSQK--LRSC 591 (791)
Q Consensus 518 ~~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~-~~~~~~~--~~~~ 591 (791)
..+|.. +.++++ |++|++++|.++. +|..+..++ +|+.|++++|.+.+.. .+..... ....
T Consensus 608 -~~lp~~-l~~l~~~L~~L~Ls~N~L~~-----------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 608 -EEIPED-FCAFTDQVEGLGFSHNKLKY-----------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp -SCCCTT-SCEECTTCCEEECCSSCCCS-----------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred -ccchHH-HhhccccCCEEECcCCCCCc-----------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 489877 789999 9999999999775 333444444 4889999888876531 1110111 1123
Q ss_pred cccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccccc-hh-
Q 038105 592 TQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF-LV- 669 (791)
Q Consensus 592 l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~-l~- 669 (791)
++.+++..+. ...++...+..+++|++|+|++|.+. .+|..+.... ......+++|+.|.++++ .+..++. +.
T Consensus 675 L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~--~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~ 749 (876)
T 4ecn_A 675 ASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK--DGNYKNTYLLTTIDLRFN-KLTSLSDDFRA 749 (876)
T ss_dssp EEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT--TSCCTTGGGCCEEECCSS-CCCCCCGGGST
T ss_pred cCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc--cccccccCCccEEECCCC-CCccchHHhhh
Confidence 5555555443 22333333446788888888888777 4555443210 000112336777777777 4555553 33
Q ss_pred -cCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccc------cccccccCCCCCCCccEEEEcC
Q 038105 670 -FAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLK------SLKSIYWKPLPLPRLKELEVED 742 (791)
Q Consensus 670 -~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~L~~L~i~~ 742 (791)
.+++|+.|+|++|. ++.++ .....+++|+.|.+.++. -...++.....+++|+.|++++
T Consensus 750 ~~l~~L~~L~Ls~N~-L~~lp-------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNC-FSSFP-------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp TTCTTCCEEECCSSC-CSSCC-------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred ccCCCcCEEEeCCCC-CCccc-------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence 67778888887764 22211 123356677777776532 1223344444566777777666
Q ss_pred C
Q 038105 743 C 743 (791)
Q Consensus 743 c 743 (791)
|
T Consensus 816 N 816 (876)
T 4ecn_A 816 N 816 (876)
T ss_dssp S
T ss_pred C
Confidence 5
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=4.4e-21 Score=217.54 Aligned_cols=142 Identities=25% Similarity=0.325 Sum_probs=125.1
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+..++.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 567888999999998775 79999999999999987 5899999999999999999998888999999999999999
Q ss_pred ccccccccccCcccccEEecCCCcccccc--hhhhcCCCCceeeccCcccccccchhHhhcCcCC--CeeeeeecCc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEELP--EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRL--RVLRMFATGI 542 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L--~~L~l~~~~~ 542 (791)
.+..+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.+.. .. +..+++| ++|++++|.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 67788876 8999999999999999764 789999999999999998743 22 5666777 9999999887
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=221.10 Aligned_cols=281 Identities=20% Similarity=0.276 Sum_probs=219.9
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcc
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEV 494 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l 494 (791)
+.++.+++.+..+|.. -.+++++|++++|.+..+++..|.++++|++|++++|......|..++.+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 4677788888888752 246899999999999999888899999999999999954445578899999999999999999
Q ss_pred cccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEe
Q 038105 495 EELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITF 573 (791)
Q Consensus 495 ~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 573 (791)
+.+|.. +.++++|+.|++++|.+.+..| ..+.++++|++|++++|.++.. .+..+..+++|+.|++++
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYI----------SHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEE----------CTTSSTTCTTCCEEEEES
T ss_pred CccCcccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCcccee----------ChhhccCCCCCCEEECCC
Confidence 998875 7899999999999999844444 4479999999999999997764 345678899999999999
Q ss_pred echhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCCE
Q 038105 574 RSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDK 653 (791)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~ 653 (791)
|.+...+ ...+.++++|++|++++|.+.+..+..+ ..+.+|+.
T Consensus 162 n~l~~~~---------------------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~----------~~l~~L~~ 204 (477)
T 2id5_A 162 CNLTSIP---------------------------TEALSHLHGLIVLRLRHLNINAIRDYSF----------KRLYRLKV 204 (477)
T ss_dssp CCCSSCC---------------------------HHHHTTCTTCCEEEEESCCCCEECTTCS----------CSCTTCCE
T ss_pred CcCcccC---------------------------hhHhcccCCCcEEeCCCCcCcEeChhhc----------ccCcccce
Confidence 8765422 2346788999999999998876322233 24678999
Q ss_pred EEEecCCCcccccc-hhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceeccccccccccccc-CCCC
Q 038105 654 ITVSSCRNLKHLTF-LVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYW-KPLP 731 (791)
Q Consensus 654 L~l~~~~~L~~l~~-l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~ 731 (791)
|.+.++..+..++. .....+|+.|++++|. ++.++. .....+++|+.|.+.++. +..++. ....
T Consensus 205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~------------~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 270 (477)
T 2id5_A 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPY------------LAVRHLVYLRFLNLSYNP-ISTIEGSMLHE 270 (477)
T ss_dssp EEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCH------------HHHTTCTTCCEEECCSSC-CCEECTTSCTT
T ss_pred eeCCCCccccccCcccccCccccEEECcCCc-ccccCH------------HHhcCccccCeeECCCCc-CCccChhhccc
Confidence 99999887776653 3445699999999884 332211 224567899999999864 555443 3456
Q ss_pred CCCccEEEEcC-------------CCCCCCCCCCCCCCCC
Q 038105 732 LPRLKELEVED-------------CHSLKKLPLDSNSAKG 758 (791)
Q Consensus 732 ~~~L~~L~i~~-------------c~~L~~L~l~~n~~~~ 758 (791)
+++|+.|.+++ |++|+.|++++|.++.
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 88999997764 5889999999998764
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=2.4e-22 Score=230.36 Aligned_cols=319 Identities=12% Similarity=0.161 Sum_probs=217.2
Q ss_pred ccEEEEcCCCccc------------------CCCCcc--CccceeEEEcccCCCCC-CC-CCCCCCCccEEEecCCC-Cc
Q 038105 391 EGFLVYAGSGLTE------------------APADVR--GWEMVRRLSLMRNSIDN-LP-TVPTCPHLLTLFLNDNE-LT 447 (791)
Q Consensus 391 ~~~~~~~~~~~~~------------------~~~~~~--~~~~l~~l~l~~~~~~~-l~-~~~~l~~L~~L~l~~~~-~~ 447 (791)
-..+..+++.+.. +|..+. .+++|++|++++|.+.. +| .+..+++|++|++++|. ++
T Consensus 208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~ 287 (636)
T 4eco_A 208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287 (636)
T ss_dssp CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSC
T ss_pred CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCc
Confidence 4567788888888 999998 99999999999998654 55 57899999999999998 87
Q ss_pred c-cchhhhccC------CcccEEeecCccccccccc--cccCcccccEEecCCCccc-ccchhhhcCCCCceeeccCccc
Q 038105 448 T-ITDDFFQSM------PCLTVLKMSDIRMLQQLPM--GISKLVSLQLLDISNTEVE-ELPEELKALVNLKCLNLDWTDV 517 (791)
Q Consensus 448 ~-~~~~~~~~l------~~L~~L~l~~~~~~~~lp~--~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~ 517 (791)
+ ..+..++.+ ++|++|++++| .+..+|. .++.+++|++|++++|.++ .+| .++.+++|+.|++++|.+
T Consensus 288 ~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 288 GEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEE
T ss_pred cccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcc
Confidence 6 444446665 99999999999 5669998 8999999999999999999 899 899999999999999987
Q ss_pred ccccchhHhhcCcC-CCeeeeeecCccccccccccchhchHHHhcCC--CCCcEEEEEeechhhHHH-hhhc----cccc
Q 038105 518 LVEVPQQLLSNFSR-LRVLRMFATGIRSVYGRFSSWYENVAEELLGL--KHLEVLEITFRSFEAYQT-FLSS----QKLR 589 (791)
Q Consensus 518 ~~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~-~~~~----~~~~ 589 (791)
..+|.. ++++++ |++|++++|.++.+ |..+..+ ++|+.|++++|.+.+... .+.. ....
T Consensus 366 -~~lp~~-l~~l~~~L~~L~Ls~N~l~~l-----------p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 366 -TEIPAN-FCGFTEQVENLSFAHNKLKYI-----------PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp -EECCTT-SEEECTTCCEEECCSSCCSSC-----------CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred -ccccHh-hhhhcccCcEEEccCCcCccc-----------chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 588877 789999 99999999997753 3344444 378888888888765311 0110 0011
Q ss_pred CCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccccc-h
Q 038105 590 SCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF-L 668 (791)
Q Consensus 590 ~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~-l 668 (791)
..++.+++..+. ....+...+..+++|++|++++|.+. .+|..+.... ......+.+|+.|+++++ .++.++. +
T Consensus 433 ~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 507 (636)
T 4eco_A 433 INVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE--NENFKNTYLLTSIDLRFN-KLTKLSDDF 507 (636)
T ss_dssp CCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET--TEECTTGGGCCEEECCSS-CCCBCCGGG
T ss_pred CCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc--cccccccCCccEEECcCC-cCCccChhh
Confidence 244555555442 22333333455788888888888877 4555443210 000011226777777766 3444543 3
Q ss_pred h--cCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccc------cccccccCCCCCCCccEEEE
Q 038105 669 V--FAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLK------SLKSIYWKPLPLPRLKELEV 740 (791)
Q Consensus 669 ~--~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~~L~~L~i 740 (791)
. .+++|+.|++++|. ++.++ .....+++|+.|.+.++. -...++.....+++|+.|++
T Consensus 508 ~~~~l~~L~~L~Ls~N~-l~~ip-------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNS-FSKFP-------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp STTTCTTCCEEECCSSC-CSSCC-------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred hhccCCCcCEEECCCCC-CCCcC-------------hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 3 66777777777764 22111 122345666666664422 12234444445666666666
Q ss_pred cCC
Q 038105 741 EDC 743 (791)
Q Consensus 741 ~~c 743 (791)
++|
T Consensus 574 s~N 576 (636)
T 4eco_A 574 GSN 576 (636)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.5e-21 Score=210.80 Aligned_cols=299 Identities=20% Similarity=0.251 Sum_probs=227.8
Q ss_pred ccEEEEcCCCcccCCCC-ccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAPAD-VRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-+.+...+..+..+|.. +..+++++.|++++|.+..++ .+..+++|++|++++|.+...++..|..+++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 45677888888888876 467899999999999998875 578999999999999999999988899999999999999
Q ss_pred cccccccccc-ccCcccccEEecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccc
Q 038105 468 IRMLQQLPMG-ISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 468 ~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
| .+..+|.. ++.+++|++|++++|.+..++. .++.+++|+.|++++|.+ ..++ ++.+++|++|++++|.++.+
T Consensus 127 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~---~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 127 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred C-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc---cccccccceeeccccccccc
Confidence 9 67778876 5899999999999999997754 589999999999999987 5565 47899999999999987653
Q ss_pred ccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEeccc
Q 038105 546 YGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSC 625 (791)
Q Consensus 546 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 625 (791)
....+|+.|++++|.+...+. .....++.+++..+.-.. ...+..+++|++|++++|
T Consensus 202 ---------------~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 202 ---------------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp ---------------ECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCC---CGGGGGCTTCSEEECCSS
T ss_pred ---------------CCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcc---cHHHcCCCCccEEECCCC
Confidence 234579999999988765432 223456666666553222 246788999999999999
Q ss_pred CCCCceeecccccccccccccccCCCCEEEEecCCCcccccc-hhcCCCCceEEEccCcchhHHhhcCCCCCCCCccccc
Q 038105 626 GWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF-LVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGII 704 (791)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~-l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~ 704 (791)
.+.+..|..+.. +++|+.|.++++ .++.++. ...+++|+.|++++|. ++.++. .
T Consensus 259 ~l~~~~~~~~~~----------l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------------~ 313 (390)
T 3o6n_A 259 ELEKIMYHPFVK----------MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER-------------N 313 (390)
T ss_dssp CCCEEESGGGTT----------CSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG-------------G
T ss_pred cCCCcChhHccc----------cccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCc-------------c
Confidence 988755555554 556777777665 3444443 3467899999999984 433321 2
Q ss_pred CCcCcccceecccccccccccccCCCCCCCccEEEEcCCCCCCCCCCCCCCC
Q 038105 705 SSPFAKLQHLELWGLKSLKSIYWKPLPLPRLKELEVEDCHSLKKLPLDSNSA 756 (791)
Q Consensus 705 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~ 756 (791)
...+++|+.|.+.++. +..++ +..+++|+.|++++|++
T Consensus 314 ~~~l~~L~~L~L~~N~-i~~~~-------------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 314 QPQFDRLENLYLDHNS-IVTLK-------------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp HHHHTTCSEEECCSSC-CCCCC-------------CCTTCCCSEEECCSSCE
T ss_pred ccccCcCCEEECCCCc-cceeC-------------chhhccCCEEEcCCCCc
Confidence 3457889999998864 43332 34556666666666665
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=5.9e-22 Score=225.89 Aligned_cols=293 Identities=15% Similarity=0.195 Sum_probs=194.4
Q ss_pred ccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEe
Q 038105 411 WEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLD 488 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 488 (791)
+.+++.++++++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|++++|......|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 5677778888877777764 45677888888888887777776677888888888888743333344567788888888
Q ss_pred cCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCc
Q 038105 489 ISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLE 567 (791)
Q Consensus 489 L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 567 (791)
|++|.++.+|.. ++.+++|+.|++++|.+ ..+++..++++++|++|++++|.++.. .++.+++|+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~l~~L~ 195 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV-------------DLSLIPSLF 195 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBC-------------CGGGCTTCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCc-------------Chhhhhhhh
Confidence 888888777766 47788888888888876 344443467788888888888876653 144567777
Q ss_pred EEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccc
Q 038105 568 VLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYV 647 (791)
Q Consensus 568 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 647 (791)
.|++++|.+..+. ....++.+++..+.- .... . ...++|+.|++++|.+.+ +..+. .
T Consensus 196 ~L~l~~n~l~~l~-------~~~~L~~L~ls~n~l-~~~~-~--~~~~~L~~L~L~~n~l~~--~~~l~----------~ 252 (597)
T 3oja_B 196 HANVSYNLLSTLA-------IPIAVEELDASHNSI-NVVR-G--PVNVELTILKLQHNNLTD--TAWLL----------N 252 (597)
T ss_dssp EEECCSSCCSEEE-------CCTTCSEEECCSSCC-CEEE-C--SCCSCCCEEECCSSCCCC--CGGGG----------G
T ss_pred hhhcccCcccccc-------CCchhheeeccCCcc-cccc-c--ccCCCCCEEECCCCCCCC--Chhhc----------c
Confidence 7777777665421 222344444444321 1111 1 123679999999998876 33333 3
Q ss_pred cCCCCEEEEecCCCcccc--cchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceeccccccccccc
Q 038105 648 FRSLDKITVSSCRNLKHL--TFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSI 725 (791)
Q Consensus 648 ~~~L~~L~l~~~~~L~~l--~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~ 725 (791)
+++|+.|+++++. +..+ ..+..+++|+.|++++|. ++.++ .....+++|+.|.+.++. +..+
T Consensus 253 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~-------------~~~~~l~~L~~L~Ls~N~-l~~i 316 (597)
T 3oja_B 253 YPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALN-------------LYGQPIPTLKVLDLSHNH-LLHV 316 (597)
T ss_dssp CTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSC-CCEEE-------------CSSSCCTTCCEEECCSSC-CCCC
T ss_pred CCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCC-CCCCC-------------cccccCCCCcEEECCCCC-CCcc
Confidence 5677777777763 3333 346678899999999874 33321 123467899999999864 5666
Q ss_pred ccCCCCCCCccEEEEcCC----------CCCCCCCCCCCCC
Q 038105 726 YWKPLPLPRLKELEVEDC----------HSLKKLPLDSNSA 756 (791)
Q Consensus 726 ~~~~~~~~~L~~L~i~~c----------~~L~~L~l~~n~~ 756 (791)
+.....+++|+.|++++| ++|+.|++++|++
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 655566888999988775 4455555555543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=7.8e-22 Score=234.13 Aligned_cols=152 Identities=16% Similarity=0.205 Sum_probs=117.9
Q ss_pred ccEEEEcCCCcccC-CCCccCccceeEEEcccCCC-CCC-C-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeec
Q 038105 391 EGFLVYAGSGLTEA-PADVRGWEMVRRLSLMRNSI-DNL-P-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMS 466 (791)
Q Consensus 391 ~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~-~~l-~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 466 (791)
-..+..+++.+..+ |..+..+++|++|++++|.. ..+ + .+..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 35677777777766 56788899999999999843 334 2 57889999999999999988888889999999999999
Q ss_pred Ccccccccccc--ccCcccccEEecCCCccccc--chhhhcCCCCceeeccCcccccccchhHhhcC--cCCCeeeeeec
Q 038105 467 DIRMLQQLPMG--ISKLVSLQLLDISNTEVEEL--PEELKALVNLKCLNLDWTDVLVEVPQQLLSNF--SRLRVLRMFAT 540 (791)
Q Consensus 467 ~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l--~~L~~L~l~~~ 540 (791)
+|......|.. ++.+++|++|++++|.+..+ +..++++++|+.|++++|.+.+..+.. ++.+ ++|+.|++++|
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCS
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECCCC
Confidence 99555556655 88999999999999988855 356899999999999999875555544 4555 56666666666
Q ss_pred Ccc
Q 038105 541 GIR 543 (791)
Q Consensus 541 ~~~ 543 (791)
.+.
T Consensus 185 ~l~ 187 (844)
T 3j0a_A 185 SLY 187 (844)
T ss_dssp BSC
T ss_pred ccc
Confidence 543
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=218.65 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=125.5
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcc
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEV 494 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l 494 (791)
+.++++++.+..+|.... ++|++|++++|.+...++..|.++++|++|++++|...+..|..++.+++|++|++++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 579999999999885322 8999999999999999988899999999999999954445578899999999999999999
Q ss_pred cccchhhhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCC--cEEEE
Q 038105 495 EELPEELKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHL--EVLEI 571 (791)
Q Consensus 495 ~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l 571 (791)
+.+|.. .+++|++|++++|.+.+ .+|.. ++++++|++|++++|.++. ..+..+++| +.|++
T Consensus 82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~-------------~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 82 VKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK-------------SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG-------------GGGGGGTTSCEEEEEE
T ss_pred eecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch-------------hhccccccceeeEEEe
Confidence 999877 89999999999999854 45665 7999999999999998764 235566777 99999
Q ss_pred Eeech
Q 038105 572 TFRSF 576 (791)
Q Consensus 572 ~~~~~ 576 (791)
++|.+
T Consensus 146 ~~n~l 150 (520)
T 2z7x_B 146 VLGET 150 (520)
T ss_dssp EECTT
T ss_pred ecccc
Confidence 99987
No 36
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=6e-21 Score=211.00 Aligned_cols=315 Identities=18% Similarity=0.207 Sum_probs=233.8
Q ss_pred CccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 410 GWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
.+.+++.|++.++.+..++.+..+++|++|++++|.+...++ +..+++|++|++++| .+..++. ++.+++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 467999999999999999988999999999999999988876 899999999999999 5666665 999999999999
Q ss_pred CCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEE
Q 038105 490 SNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVL 569 (791)
Q Consensus 490 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 569 (791)
++|.++.++. ++.+++|++|++++|.+ ..++. ++++++|++|++.+ .+.. . ..+.++++|+.|
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~-~~~~-----------~-~~~~~l~~L~~L 182 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTI-SDISA--LSGLTSLQQLSFGN-QVTD-----------L-KPLANLTTLERL 182 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEE-CCCGG--GTTCTTCSEEEEEE-SCCC-----------C-GGGTTCTTCCEE
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCcc-CCChh--hccCCcccEeecCC-cccC-----------c-hhhccCCCCCEE
Confidence 9999998875 89999999999999987 66765 79999999999974 3322 1 238899999999
Q ss_pred EEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccC
Q 038105 570 EITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFR 649 (791)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 649 (791)
++++|.+...+.+ .....++.+++..+.-.. .. .+..+++|++|++++|.+.+ + +.+ ..++
T Consensus 183 ~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-~-~~l----------~~l~ 243 (466)
T 1o6v_A 183 DISSNKVSDISVL----AKLTNLESLIATNNQISD-IT--PLGILTNLDELSLNGNQLKD-I-GTL----------ASLT 243 (466)
T ss_dssp ECCSSCCCCCGGG----GGCTTCSEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCCC-C-GGG----------GGCT
T ss_pred ECcCCcCCCChhh----ccCCCCCEEEecCCcccc-cc--cccccCCCCEEECCCCCccc-c-hhh----------hcCC
Confidence 9999988765321 223455666666543221 11 26678889999998887765 2 122 2467
Q ss_pred CCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccccccccCC
Q 038105 650 SLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYWKP 729 (791)
Q Consensus 650 ~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 729 (791)
+|+.|+++++ .+..+..+..+++|+.|++++|. ++.+. ....+++|+.|.+.++. +..++. .
T Consensus 244 ~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--------------~~~~l~~L~~L~L~~n~-l~~~~~-~ 305 (466)
T 1o6v_A 244 NLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ-ISNIS--------------PLAGLTALTNLELNENQ-LEDISP-I 305 (466)
T ss_dssp TCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCG--------------GGTTCTTCSEEECCSSC-CSCCGG-G
T ss_pred CCCEEECCCC-ccccchhhhcCCCCCEEECCCCc-cCccc--------------cccCCCccCeEEcCCCc-ccCchh-h
Confidence 8888888887 45666667788889999998874 22111 14467889999998864 444443 4
Q ss_pred CCCCCccEEEEcC-----------CCCCCCCCCCCCCCCCccEEEEcchhhhhccccCcccccccc
Q 038105 730 LPLPRLKELEVED-----------CHSLKKLPLDSNSAKGRRILIRGDEDWWRRLQWEDEATQNAF 784 (791)
Q Consensus 730 ~~~~~L~~L~i~~-----------c~~L~~L~l~~n~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 784 (791)
..+++|+.|++++ |++|+.|.+++|.++... .+ .....++.++..+|.+....
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SL-ANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCTTCCEEECCSSCCCBCG
T ss_pred cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hh-ccCCCCCEEeCCCCccCccc
Confidence 5678888888765 467888888888776431 11 22234556666777665443
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.9e-21 Score=214.79 Aligned_cols=339 Identities=16% Similarity=0.213 Sum_probs=212.4
Q ss_pred ccEEEEcCCCcccC-CCCccCccceeEEEcccCCCC-CCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeec
Q 038105 391 EGFLVYAGSGLTEA-PADVRGWEMVRRLSLMRNSID-NLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMS 466 (791)
Q Consensus 391 ~~~~~~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~-~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 466 (791)
-..+..+++.+..+ |..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 35677888888876 667899999999999999885 343 47889999999999999998888889999999999999
Q ss_pred Ccccccccccc--ccCcccccEEecCCCccccc-chh-hhcCCCCceeeccCcccccccchhHhhcC--cCCCeeeeeec
Q 038105 467 DIRMLQQLPMG--ISKLVSLQLLDISNTEVEEL-PEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNF--SRLRVLRMFAT 540 (791)
Q Consensus 467 ~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l--~~L~~L~l~~~ 540 (791)
+|...+..|.. ++.+++|++|++++|.+..+ |.. ++.+++|+.|++++|.+.+..|.. +..+ .+|+.|++++|
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTC
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccccC
Confidence 99554445554 89999999999999999976 555 899999999999999985554543 5555 68889999988
Q ss_pred CccccccccccchhchHHHhcCCCCCcEEEEEeechhhHH-HhhhcccccCCcccceeecCCCCC---------cccccc
Q 038105 541 GIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQ-TFLSSQKLRSCTQAPFLYKFDREE---------SIDVAD 610 (791)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~---------~~~~~~ 610 (791)
.+......... ......+..+++|+.|++++|.+.... ..+........++.+.+..+.... ......
T Consensus 191 ~l~~~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 191 TLQDMNEYWLG--WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp BCTTCSTTCTT--HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cccccchhhcc--ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 87664331110 011222445678899999888775422 111111111334444444332111 011111
Q ss_pred cc--cccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCccccc--chhcCCCCceEEEccCcchh
Q 038105 611 LA--NLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLT--FLVFAPNLKSISVTHCDDME 686 (791)
Q Consensus 611 l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~--~l~~~~nL~~L~l~~c~~L~ 686 (791)
+. ..++|++|++++|.+.+..|..+.. +++|+.|+++++. +..+. .+..+++|+.|++++|. ++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~ 336 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSH----------FTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNF-LG 336 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTT----------CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CC
T ss_pred cccccccCceEEEecCccccccchhhccc----------CCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCc-cC
Confidence 11 1256777777777666544433433 3445555554442 22221 34445666666666653 22
Q ss_pred HHhhcCCCCCCCCcccccCCcCcccceeccccccccccc-ccCCCCCCCccEEEEcC-------------CCCCCCCCCC
Q 038105 687 EIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSI-YWKPLPLPRLKELEVED-------------CHSLKKLPLD 752 (791)
Q Consensus 687 ~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~-------------c~~L~~L~l~ 752 (791)
.+.. .....+++|+.|++.++. +..+ +.....+++|+.|++++ |++|+.|+++
T Consensus 337 ~~~~------------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 337 SIDS------------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp EECG------------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CcCh------------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 1110 122345566666666543 3332 33334456666665544 4566666666
Q ss_pred CCCCC
Q 038105 753 SNSAK 757 (791)
Q Consensus 753 ~n~~~ 757 (791)
+|+++
T Consensus 404 ~N~l~ 408 (455)
T 3v47_A 404 TNPWD 408 (455)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 66654
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.2e-21 Score=219.84 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=116.6
Q ss_pred ccEEEEcCCCcccCC-CCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAP-ADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..+..+++.+..++ ..+..++++++|++++|.+..++ .+..+++|++|++++|.+...++..|.++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 345677777777663 56788899999999999888765 478889999999999999888888888999999999999
Q ss_pred ccccc-cccccccCcccccEEecCCCc-ccccc-hhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCc
Q 038105 468 IRMLQ-QLPMGISKLVSLQLLDISNTE-VEELP-EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGI 542 (791)
Q Consensus 468 ~~~~~-~lp~~~~~l~~L~~L~L~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~ 542 (791)
|.... ..|..++.+++|++|++++|. +..+| ..++.+++|++|++++|.+.+..|.. ++++++|++|++++|.+
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBS
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcc
Confidence 84332 356678889999999999887 56666 46888888888888888875555554 56666666666665553
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=2.5e-21 Score=220.80 Aligned_cols=298 Identities=19% Similarity=0.230 Sum_probs=228.9
Q ss_pred ccEEEEcCCCcccCCCC-ccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAPAD-VRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..+.+.+..+..+|.. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+..+++..|+++++|++|++++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 35677788888888776 467889999999999998876 578999999999999999999998899999999999999
Q ss_pred cccccccccc-ccCcccccEEecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccc
Q 038105 468 IRMLQQLPMG-ISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 468 ~~~~~~lp~~-~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
| .+..+|.. ++.+++|++|++++|.++.++. .++.+++|+.|++++|.+ ..++ ++.+++|++|++++|.++.+
T Consensus 133 n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~---~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 133 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC---GGGCTTCSEEECCSSCCSEE
T ss_pred C-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC---hhhhhhhhhhhcccCccccc
Confidence 9 66677766 6899999999999999997654 699999999999999987 5565 46899999999999987653
Q ss_pred ccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEeccc
Q 038105 546 YGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSC 625 (791)
Q Consensus 546 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 625 (791)
....+|+.|++++|.+..++. .....++.+++..+.-.. +..+..+++|++|+|++|
T Consensus 208 ---------------~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 208 ---------------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp ---------------ECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSS
T ss_pred ---------------cCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCC
Confidence 334579999999988765432 222456666666553222 356888999999999999
Q ss_pred CCCCceeecccccccccccccccCCCCEEEEecCCCcccccc-hhcCCCCceEEEccCcchhHHhhcCCCCCCCCccccc
Q 038105 626 GWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF-LVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGII 704 (791)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~-l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~ 704 (791)
.+.+..|..+.. +++|+.|.++++ .+..++. ...+++|+.|++++|. +..++. .
T Consensus 265 ~l~~~~~~~~~~----------l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~-------------~ 319 (597)
T 3oja_B 265 ELEKIMYHPFVK----------MQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER-------------N 319 (597)
T ss_dssp CCCEEESGGGTT----------CSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG-------------G
T ss_pred ccCCCCHHHhcC----------ccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc-------------c
Confidence 998866666665 455666666655 3444433 3457899999999885 332211 2
Q ss_pred CCcCcccceecccccccccccccCCCCCCCccEEEEcCCC
Q 038105 705 SSPFAKLQHLELWGLKSLKSIYWKPLPLPRLKELEVEDCH 744 (791)
Q Consensus 705 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 744 (791)
...+++|+.|.+.++. +..++ ...+++|+.|++++++
T Consensus 320 ~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 320 QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred cccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 3467889999998864 44443 5668999999998864
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.9e-21 Score=201.44 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=133.1
Q ss_pred CCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeecc
Q 038105 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLD 513 (791)
Q Consensus 434 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 513 (791)
.+++.|++++|.+..+++. +..+++|++|++++| .+..+|..++.+++|++|++++|.++.+|..++.+++|+.|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 4566666666666655554 455777777777777 45577777777778888888877777777777777888888887
Q ss_pred CcccccccchhH--------hhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhc
Q 038105 514 WTDVLVEVPQQL--------LSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSS 585 (791)
Q Consensus 514 ~~~~~~~~p~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 585 (791)
+|+..+.+|..+ ++++++|++|++++|.++. +|..++.+++|+.|++++|.+..+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------lp~~l~~l~~L~~L~L~~N~l~~l------ 221 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----------LPASIANLQNLKSLKIRNSPLSAL------ 221 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----------CCGGGGGCTTCCEEEEESSCCCCC------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-----------chHhhcCCCCCCEEEccCCCCCcC------
Confidence 777667777652 1237788888888877654 445677777888888877766432
Q ss_pred ccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccc
Q 038105 586 QKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHL 665 (791)
Q Consensus 586 ~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l 665 (791)
+..+..+++|++|++++|.+.+.+|..+.. +++|+.|.+++|.....+
T Consensus 222 ----------------------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~----------l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 222 ----------------------GPAIHHLPKLEELDLRGCTALRNYPPIFGG----------RAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp ----------------------CGGGGGCTTCCEEECTTCTTCCBCCCCTTC----------CCCCCEEECTTCTTCCBC
T ss_pred ----------------------chhhccCCCCCEEECcCCcchhhhHHHhcC----------CCCCCEEECCCCCchhhc
Confidence 124566777888888887777766554432 455666666666555444
Q ss_pred c-chhcCCCCceEEEccCc
Q 038105 666 T-FLVFAPNLKSISVTHCD 683 (791)
Q Consensus 666 ~-~l~~~~nL~~L~l~~c~ 683 (791)
+ .+..+++|+.|+|++|+
T Consensus 270 p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CTTGGGCTTCCEEECTTCT
T ss_pred chhhhcCCCCCEEeCCCCC
Confidence 4 34555666666666654
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=7.5e-21 Score=200.34 Aligned_cols=271 Identities=16% Similarity=0.185 Sum_probs=193.7
Q ss_pred cceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC
Q 038105 412 EMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN 491 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 491 (791)
.+++.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++|......|..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 46888888888888877422 36889999999988888777788899999999998844444477788899999999999
Q ss_pred CcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEE
Q 038105 492 TEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEI 571 (791)
Q Consensus 492 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (791)
|.++.+|..+. ++|++|++++|.+ ..+|...+.++++|++|++++|.++... ..+..+..+ +|+.|++
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSG--------FEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGG--------SCTTSSCSC-CCSCCBC
T ss_pred CcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCC--------CCcccccCC-ccCEEEC
Confidence 98888887655 7899999998887 6677666788999999999988875421 134455666 8888888
Q ss_pred EeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCC
Q 038105 572 TFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSL 651 (791)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 651 (791)
++|.+..++. .....++.+++.... .....+..+.++++|++|++++|.+.+..+..+. .+++|
T Consensus 180 ~~n~l~~l~~-----~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~----------~l~~L 243 (332)
T 2ft3_A 180 SEAKLTGIPK-----DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS----------FLPTL 243 (332)
T ss_dssp CSSBCSSCCS-----SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG----------GCTTC
T ss_pred cCCCCCccCc-----cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh----------CCCCC
Confidence 8888766432 122456666665542 3334445678889999999999988774333333 36778
Q ss_pred CEEEEecCCCcccccc-hhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccc-cCCcCcccceecccccc
Q 038105 652 DKITVSSCRNLKHLTF-LVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGI-ISSPFAKLQHLELWGLK 720 (791)
Q Consensus 652 ~~L~l~~~~~L~~l~~-l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~-~~~~~~~L~~L~l~~~~ 720 (791)
+.|+++++ .++.++. +..+++|+.|+++++. ++.++... +.+. ....++.|+.|.+.+++
T Consensus 244 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~-------~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 244 RELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVND-------FCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTS-------SSCSSCCSSSCCBSEEECCSSS
T ss_pred CEEECCCC-cCeecChhhhcCccCCEEECCCCC-CCccChhH-------ccccccccccccccceEeecCc
Confidence 88888877 4556653 7788999999999874 44432211 1111 11225778888888865
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=2.2e-21 Score=203.25 Aligned_cols=206 Identities=22% Similarity=0.232 Sum_probs=157.5
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC-CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
..+...+..+..+|..+..+++|++|++++|.+..+|. +..+++|++|++++|.+..++.. +..+++|++|++++|+.
T Consensus 84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPE 162 (328)
T ss_dssp CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETT
T ss_pred eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCC
Confidence 45677778888888888888888888888888887774 67788888888888888766544 78888888888888777
Q ss_pred cccccccccC---------cccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC
Q 038105 471 LQQLPMGISK---------LVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG 541 (791)
Q Consensus 471 ~~~lp~~~~~---------l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 541 (791)
.+.+|..++. +++|++|++++|.++.+|..++.+++|+.|++++|.+ ..+|.. ++.+++|++|++++|.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~-l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPA-IHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGG-GGGCTTCCEEECTTCT
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchh-hccCCCCCEEECcCCc
Confidence 7788876654 8888888888888888888888888888888888877 467665 6788888888888877
Q ss_pred ccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEE
Q 038105 542 IRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLY 621 (791)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~ 621 (791)
+.+ .+|..++.+++|+.|++++|.... ..+..+.++++|++|+
T Consensus 241 ~~~----------~~p~~~~~l~~L~~L~L~~n~~~~---------------------------~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 241 ALR----------NYPPIFGGRAPLKRLILKDCSNLL---------------------------TLPLDIHRLTQLEKLD 283 (328)
T ss_dssp TCC----------BCCCCTTCCCCCCEEECTTCTTCC---------------------------BCCTTGGGCTTCCEEE
T ss_pred chh----------hhHHHhcCCCCCCEEECCCCCchh---------------------------hcchhhhcCCCCCEEe
Confidence 554 245567777888888877665432 1123466778888888
Q ss_pred ecccCCCCceeecccc
Q 038105 622 FRSCGWSGGLKIDYKD 637 (791)
Q Consensus 622 l~~~~~~~~~~~~~~~ 637 (791)
|++|.+.+.+|..+..
T Consensus 284 L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CTTCTTCCCCCGGGGG
T ss_pred CCCCCchhhccHHHhh
Confidence 8888888777776654
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.4e-20 Score=213.35 Aligned_cols=148 Identities=20% Similarity=0.316 Sum_probs=123.1
Q ss_pred ccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecC
Q 038105 411 WEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDIS 490 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~ 490 (791)
+...++++++++.+..+|... .++|++|++++|.+..+++..|.++++|++|++++|......|..|+.+++|++|+++
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cCCCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 344589999999999988522 3899999999999999998889999999999999995444447789999999999999
Q ss_pred CCcccccchhhhcCCCCceeeccCcccccccc--hhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCC--
Q 038105 491 NTEVEELPEELKALVNLKCLNLDWTDVLVEVP--QQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHL-- 566 (791)
Q Consensus 491 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-- 566 (791)
+|.++.+|.. .+++|++|++++|.+ ..+| .. ++++++|++|++++|.++.. .+..+++|
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l-~~l~~p~~-~~~l~~L~~L~L~~n~l~~~-------------~~~~l~~L~L 171 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDF-DVLPVCKE-FGNLTKLTFLGLSAAKFRQL-------------DLLPVAHLHL 171 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCC-SBCCCCGG-GGGCTTCCEEEEECSBCCTT-------------TTGGGTTSCE
T ss_pred CCcCCccCcc--ccccCCEEECCCCCc-cccCchHh-hcccCcccEEecCCCccccC-------------chhhhhhcee
Confidence 9999999987 899999999999997 4543 44 89999999999999987651 23344455
Q ss_pred cEEEEEeech
Q 038105 567 EVLEITFRSF 576 (791)
Q Consensus 567 ~~L~l~~~~~ 576 (791)
+.|++++|.+
T Consensus 172 ~~L~L~~n~l 181 (562)
T 3a79_B 172 SCILLDLVSY 181 (562)
T ss_dssp EEEEEEESSC
T ss_pred eEEEeecccc
Confidence 9999999877
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=202.03 Aligned_cols=198 Identities=21% Similarity=0.312 Sum_probs=156.2
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
+.+..++..+..+|..+. ++++.|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN- 110 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-
Confidence 346677788888887665 588999999998887764 788899999999999888887777888899999999988
Q ss_pred cccccccc-ccCcccccEEecCCCcccccch--hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccc
Q 038105 470 MLQQLPMG-ISKLVSLQLLDISNTEVEELPE--ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546 (791)
Q Consensus 470 ~~~~lp~~-~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 546 (791)
.+..+|.. ++.+++|++|++++|.++.+|. .++.+++|+.|++++|...+.++...++++++|++|++++|.++..
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~- 189 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY- 189 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-
Confidence 56666655 7888999999999998888876 5888899999999988544666555578889999999999887653
Q ss_pred cccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccC
Q 038105 547 GRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCG 626 (791)
Q Consensus 547 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 626 (791)
.+..+..+++|+.|++++|.+...+. ..+..+++|++|++++|.
T Consensus 190 ---------~~~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 190 ---------EPKSLKSIQNVSHLILHMKQHILLLE---------------------------IFVDVTSSVECLELRDTD 233 (353)
T ss_dssp ---------CTTTTTTCSEEEEEEEECSCSTTHHH---------------------------HHHHHTTTEEEEEEESCB
T ss_pred ---------CHHHHhccccCCeecCCCCccccchh---------------------------hhhhhcccccEEECCCCc
Confidence 35667888889999998887755432 123456788888888887
Q ss_pred CCC
Q 038105 627 WSG 629 (791)
Q Consensus 627 ~~~ 629 (791)
+.+
T Consensus 234 l~~ 236 (353)
T 2z80_A 234 LDT 236 (353)
T ss_dssp CTT
T ss_pred ccc
Confidence 766
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=5.4e-20 Score=193.63 Aligned_cols=243 Identities=18% Similarity=0.218 Sum_probs=149.5
Q ss_pred cceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC
Q 038105 412 EMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN 491 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 491 (791)
.+++.++++++.+..+|.. -.+++++|++++|.+..+++..|..+++|++|++++|......|..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4677777777777776642 236777888888877777776677788888888887743333466777788888888888
Q ss_pred CcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEE
Q 038105 492 TEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEI 571 (791)
Q Consensus 492 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (791)
|.++.+|..+. ++|+.|++++|.+ ..++...+.++++|++|++++|.+.... ..+..+..+++|+.|++
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSG--------IENGAFQGMKKLSYIRI 178 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGG--------BCTTGGGGCTTCCEEEC
T ss_pred CcCCccChhhc--ccccEEECCCCcc-cccCHhHhcCCccccEEECCCCcCCccC--------cChhhccCCCCcCEEEC
Confidence 87777776554 6788888887776 5555555677888888888877764311 13455677777888887
Q ss_pred EeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCC
Q 038105 572 TFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSL 651 (791)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 651 (791)
++|.+..++. .....++.+++..+. .....+..+.++++|++|++++|.+.+..+..+. .+++|
T Consensus 179 ~~n~l~~l~~-----~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------~l~~L 242 (330)
T 1xku_A 179 ADTNITTIPQ-----GLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA----------NTPHL 242 (330)
T ss_dssp CSSCCCSCCS-----SCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG----------GSTTC
T ss_pred CCCccccCCc-----cccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc----------CCCCC
Confidence 7776654321 111233333333321 2222234456666677777766665542221222 24556
Q ss_pred CEEEEecCCCccccc-chhcCCCCceEEEccCc
Q 038105 652 DKITVSSCRNLKHLT-FLVFAPNLKSISVTHCD 683 (791)
Q Consensus 652 ~~L~l~~~~~L~~l~-~l~~~~nL~~L~l~~c~ 683 (791)
+.|+++++ .+..++ .+..+++|+.|+++++.
T Consensus 243 ~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 243 RELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp CEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred CEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence 66666655 333443 35555666666666653
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=3.3e-21 Score=200.72 Aligned_cols=249 Identities=16% Similarity=0.228 Sum_probs=184.8
Q ss_pred cceeEEEcccCCCCC---CC-CCCCCCCccEEEecC-CCCcccchhhhccCCcccEEeecCccccccccccccCcccccE
Q 038105 412 EMVRRLSLMRNSIDN---LP-TVPTCPHLLTLFLND-NELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQL 486 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~---l~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 486 (791)
.+++.|+++++.+.. +| .+..+++|++|++++ |.+....+..|..+++|++|++++|...+.+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578889999888874 44 567888999999985 7777666666888999999999998555578888889999999
Q ss_pred EecCCCccc-ccchhhhcCCCCceeeccCcccccccchhHhhcCc-CCCeeeeeecCccccccccccchhchHHHhcCCC
Q 038105 487 LDISNTEVE-ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFS-RLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK 564 (791)
Q Consensus 487 L~L~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 564 (791)
|++++|.++ .+|..++.+++|++|++++|.+.+.+|.. ++.++ +|++|++++|.+++ .+|..+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~----------~~~~~~~~l~ 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG----------KIPPTFANLN 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE----------ECCGGGGGCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec----------cCChHHhCCc
Confidence 999999888 77888889999999999999886688876 67777 89999999888664 2456667776
Q ss_pred CCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccccccccc
Q 038105 565 HLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQ 644 (791)
Q Consensus 565 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l 644 (791)
|+.|++++|.+... .+..+..+++|++|++++|.+.+.++. +.
T Consensus 199 -L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-------- 241 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGD---------------------------ASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-------- 241 (313)
T ss_dssp -CSEEECCSSEEEEC---------------------------CGGGCCTTSCCSEEECCSSEECCBGGG-CC--------
T ss_pred -ccEEECcCCcccCc---------------------------CCHHHhcCCCCCEEECCCCceeeecCc-cc--------
Confidence 89999888876531 124567788888999988887764332 22
Q ss_pred ccccCCCCEEEEecCCCccccc-chhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceeccccccccc
Q 038105 645 PYVFRSLDKITVSSCRNLKHLT-FLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLK 723 (791)
Q Consensus 645 ~~~~~~L~~L~l~~~~~L~~l~-~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~ 723 (791)
.+++|+.|+++++.--..++ .+..+++|+.|+++++. ++. .+| ....+++|+.|.+.+++.+.
T Consensus 242 --~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~--------~ip-----~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 242 --LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN-LCG--------EIP-----QGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp --CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE-EEE--------ECC-----CSTTGGGSCGGGTCSSSEEE
T ss_pred --ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc-ccc--------cCC-----CCccccccChHHhcCCCCcc
Confidence 35678888887774322333 47778899999999875 221 111 12467788888888776555
Q ss_pred c
Q 038105 724 S 724 (791)
Q Consensus 724 ~ 724 (791)
.
T Consensus 306 ~ 306 (313)
T 1ogq_A 306 G 306 (313)
T ss_dssp S
T ss_pred C
Confidence 4
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=4.9e-21 Score=199.47 Aligned_cols=225 Identities=16% Similarity=0.207 Sum_probs=177.6
Q ss_pred CCccEEEecCCCCcc--cchhhhccCCcccEEeecC-ccccccccccccCcccccEEecCCCccc-ccchhhhcCCCCce
Q 038105 434 PHLLTLFLNDNELTT--ITDDFFQSMPCLTVLKMSD-IRMLQQLPMGISKLVSLQLLDISNTEVE-ELPEELKALVNLKC 509 (791)
Q Consensus 434 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~ 509 (791)
.+++.|++++|.+.+ ..+..+..+++|++|++++ |...+.+|..++.+++|++|++++|.++ .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999986 5555689999999999995 7566689999999999999999999998 88999999999999
Q ss_pred eeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCC-CCcEEEEEeechhhHHHhhhcccc
Q 038105 510 LNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK-HLEVLEITFRSFEAYQTFLSSQKL 588 (791)
Q Consensus 510 L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~ 588 (791)
|++++|.+.+.+|.. ++.+++|++|++++|.+++ .+|..+..++ +|+.|++++|.+.+.
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----------~~p~~l~~l~~~L~~L~L~~N~l~~~--------- 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG----------AIPDSYGSFSKLFTSMTISRNRLTGK--------- 189 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE----------ECCGGGGCCCTTCCEEECCSSEEEEE---------
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC----------cCCHHHhhhhhcCcEEECcCCeeecc---------
Confidence 999999987688876 7999999999999999764 3667788888 999999998877531
Q ss_pred cCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccccch
Q 038105 589 RSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFL 668 (791)
Q Consensus 589 ~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l 668 (791)
.+..+..++ |++|++++|.+.+..|..+. .+++|+.|.++++.--..++.+
T Consensus 190 ------------------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~----------~l~~L~~L~L~~N~l~~~~~~~ 240 (313)
T 1ogq_A 190 ------------------IPPTFANLN-LAFVDLSRNMLEGDASVLFG----------SDKNTQKIHLAKNSLAFDLGKV 240 (313)
T ss_dssp ------------------CCGGGGGCC-CSEEECCSSEEEECCGGGCC----------TTSCCSEEECCSSEECCBGGGC
T ss_pred ------------------CChHHhCCc-ccEEECcCCcccCcCCHHHh----------cCCCCCEEECCCCceeeecCcc
Confidence 123455665 99999999988775555444 3677888888877433345556
Q ss_pred hcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccc
Q 038105 669 VFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLK 720 (791)
Q Consensus 669 ~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 720 (791)
..+++|+.|++++|.--..+ | .....+++|+.|++.++.
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~---------p----~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTL---------P----QGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp CCCTTCCEEECCSSCCEECC---------C----GGGGGCTTCCEEECCSSE
T ss_pred cccCCCCEEECcCCcccCcC---------C----hHHhcCcCCCEEECcCCc
Confidence 77889999999987511111 1 123456788888888764
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=1e-19 Score=210.33 Aligned_cols=149 Identities=26% Similarity=0.326 Sum_probs=126.6
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. .++++|++++|.+..++ .+..+++|++|++++|.+..++++.|.++++|++|+|++| .
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-c
Confidence 34566778889988775 68999999999999887 5789999999999999999999888999999999999999 5
Q ss_pred cccccc-cccCcccccEEecCCCcccccchh-hhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCcccc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
+..+|. .|+++++|++|++++|+++.+|.. ++++++|+.|++++|.+.. .+|.. ++.+++|++|++++|.++.+
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccc
Confidence 777765 589999999999999999988764 8999999999999998743 34544 78899999999999987664
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=9e-20 Score=199.59 Aligned_cols=199 Identities=19% Similarity=0.237 Sum_probs=138.3
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+...+.++..+|.. .++++.|++++|.+..+|.. +++|++|++++|.+..++.. .++|++|++++| .
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~ 142 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-Q 142 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-C
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCC-C
Confidence 35677777778777652 36888888988888887753 47888999988887765431 268889999888 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..+| .++.+++|++|++++|+++.+|..+ .+|+.|++++|.+ ..+|. ++++++|++|++++|.+++++.
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l-~~l~~--~~~l~~L~~L~l~~N~l~~l~~--- 212 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSLKKLPD--- 212 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-SSCCC--CTTCTTCCEEECCSSCCSSCCC---
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcC-CcCcc--ccCCCCCCEEECCCCcCCcCCC---
Confidence 66688 5888889999999998888877543 5888999998877 55774 7888999999998888765322
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
. .++|+.|++++|.+..++. ......++.+++..+. ....+ . .+++|++|++++|.+.+
T Consensus 213 -----~------~~~L~~L~l~~n~l~~lp~----~~~l~~L~~L~l~~N~-l~~l~-~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 213 -----L------PLSLESIVAGNNILEELPE----LQNLPFLTTIYADNNL-LKTLP-D---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp -----C------CTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSC-CSSCC-S---CCTTCCEEECCSSCCSC
T ss_pred -----C------cCcccEEECcCCcCCcccc----cCCCCCCCEEECCCCc-CCccc-c---cccccCEEECCCCcccc
Confidence 1 2478888888887765432 1122344555554432 11111 1 23567777777776655
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=1.2e-19 Score=199.57 Aligned_cols=238 Identities=23% Similarity=0.294 Sum_probs=190.2
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-W 134 (452)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-c
Confidence 45667778888987766 68999999999998764 5789999999999999999998888999999999999999 5
Q ss_pred cccccc-cccCcccccEEecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
+..+|. .++.+++|++|++++|.++.+|. .+..+++|+.|++++|+..+.++...+.++++|++|++++|.++.++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence 666665 48889999999999999998876 58999999999999987778888877899999999999999987632
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
.+..+++|+.|++++|.+.... +..+.++++|++|++++|.+.
T Consensus 213 ----------~~~~l~~L~~L~Ls~N~l~~~~---------------------------~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 213 ----------NLTPLVGLEELEMSGNHFPEIR---------------------------PGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp ----------CCTTCTTCCEEECTTSCCSEEC---------------------------GGGGTTCTTCCEEECTTSCCC
T ss_pred ----------cccccccccEEECcCCcCcccC---------------------------cccccCccCCCEEEeCCCcCc
Confidence 3678899999999988775421 345677788888888888877
Q ss_pred CceeecccccccccccccccCCCCEEEEecCCCcccccc--hhcCCCCceEEEccCc
Q 038105 629 GGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF--LVFAPNLKSISVTHCD 683 (791)
Q Consensus 629 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~--l~~~~nL~~L~l~~c~ 683 (791)
+..+..+. .+++|+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 256 ~~~~~~~~----------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 256 LIERNAFD----------GLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTTTT----------TCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred eECHHHhc----------CCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 64333333 3566777777766 4555443 4567788888887654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=198.35 Aligned_cols=238 Identities=22% Similarity=0.302 Sum_probs=190.9
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++| .
T Consensus 47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-c
Confidence 45667788899988776 78999999999998765 5789999999999999999999888999999999999999 6
Q ss_pred cccccc-cccCcccccEEecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
+..+|. .+..+++|++|++++|.++.+|. .+..+++|+.|++++|+..+.++...+.++++|++|++++|.++.++
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence 666665 58999999999999999998876 58999999999999987778888877899999999999999987632
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
.+..+++|+.|++++|.+.... +..+.++++|++|++++|.+.
T Consensus 202 ----------~~~~l~~L~~L~Ls~N~l~~~~---------------------------~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 202 ----------NLTPLIKLDELDLSGNHLSAIR---------------------------PGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp ----------CCTTCSSCCEEECTTSCCCEEC---------------------------TTTTTTCTTCCEEECTTCCCC
T ss_pred ----------ccCCCcccCEEECCCCccCccC---------------------------hhhhccCccCCEEECCCCcee
Confidence 3678899999999988765421 345677888888888888877
Q ss_pred CceeecccccccccccccccCCCCEEEEecCCCcccccc--hhcCCCCceEEEccCc
Q 038105 629 GGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF--LVFAPNLKSISVTHCD 683 (791)
Q Consensus 629 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~--l~~~~nL~~L~l~~c~ 683 (791)
+..+..+. .+++|+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 245 ~~~~~~~~----------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 245 VIERNAFD----------NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EECTTSST----------TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEChhhhc----------CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 64333333 3456677777665 3444443 4567788888887654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=187.30 Aligned_cols=275 Identities=20% Similarity=0.209 Sum_probs=197.9
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
.....+.+++.+..+|.. -.++|++|++++|.+..+++..|.++++|++|++++|......|..++.+++|++|++++|
T Consensus 32 ~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCeEeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 334578888999888852 2369999999999999998877999999999999999444444567999999999999999
Q ss_pred cccccchh-hhcCCCCceeeccCcccccccch-hHhhcCcCCCeeeeeecC-ccccccccccchhchHHHhcCCCCCcEE
Q 038105 493 EVEELPEE-LKALVNLKCLNLDWTDVLVEVPQ-QLLSNFSRLRVLRMFATG-IRSVYGRFSSWYENVAEELLGLKHLEVL 569 (791)
Q Consensus 493 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L 569 (791)
.++.+|.. ++.+++|++|++++|.+ ..+|. ..+.++++|++|++++|. +... .+..+..+++|+.|
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~----------~~~~~~~l~~L~~L 179 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKI----------QRKDFAGLTFLEEL 179 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEE----------CTTTTTTCCEEEEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCcccccc----------CHHHccCCCCCCEE
Confidence 99999877 89999999999999987 67776 457899999999999984 4442 24567889999999
Q ss_pred EEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccC
Q 038105 570 EITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFR 649 (791)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 649 (791)
++++|.+... .+..+.++++|++|++++|.+.. ++..+. ..++
T Consensus 180 ~l~~n~l~~~---------------------------~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~---------~~~~ 222 (353)
T 2z80_A 180 EIDASDLQSY---------------------------EPKSLKSIQNVSHLILHMKQHIL-LLEIFV---------DVTS 222 (353)
T ss_dssp EEEETTCCEE---------------------------CTTTTTTCSEEEEEEEECSCSTT-HHHHHH---------HHTT
T ss_pred ECCCCCcCcc---------------------------CHHHHhccccCCeecCCCCcccc-chhhhh---------hhcc
Confidence 9999876542 13457788999999999998754 443322 1356
Q ss_pred CCCEEEEecCCCcccc-----cchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccccc
Q 038105 650 SLDKITVSSCRNLKHL-----TFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKS 724 (791)
Q Consensus 650 ~L~~L~l~~~~~L~~l-----~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 724 (791)
+|+.|+++++. ++.+ ......+.++.++++++. +...... .+| .....+++|+.|++.++ .++.
T Consensus 223 ~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~----~l~----~~l~~l~~L~~L~Ls~N-~l~~ 291 (353)
T 2z80_A 223 SVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLF----QVM----KLLNQISGLLELEFSRN-QLKS 291 (353)
T ss_dssp TEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHHH----HHH----HHHHTCTTCCEEECCSS-CCCC
T ss_pred cccEEECCCCc-cccccccccccccccchhhcccccccc-ccCcchh----hhH----HHHhcccCCCEEECCCC-CCCc
Confidence 78888887763 3332 223345677788887763 2211100 000 12345788999999886 4555
Q ss_pred cccCCCCCCCccEEEEcCCCCCCCCCCCCCCCC
Q 038105 725 IYWKPLPLPRLKELEVEDCHSLKKLPLDSNSAK 757 (791)
Q Consensus 725 ~~~~~~~~~~L~~L~i~~c~~L~~L~l~~n~~~ 757 (791)
++... +.++++|+.|++++|++.
T Consensus 292 i~~~~----------~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 292 VPDGI----------FDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCTTT----------TTTCTTCCEEECCSSCBC
T ss_pred cCHHH----------HhcCCCCCEEEeeCCCcc
Confidence 55432 134556666666767664
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=4.4e-19 Score=186.77 Aligned_cols=258 Identities=19% Similarity=0.252 Sum_probs=191.9
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
+.+...+.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 36 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN- 112 (332)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred CEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-
Confidence 356677788888987765 68999999999998875 5789999999999999999998888999999999999999
Q ss_pred ccccccccccCcccccEEecCCCcccccchh-hhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCcccccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSVYG 547 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 547 (791)
.+..+|..+. ++|++|++++|.++.+|.. +..+++|+.|++++|.+.. .++...+..+ +|++|++++|.++.++.
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 6778887765 8999999999999988764 8999999999999998732 1333336667 99999999999876433
Q ss_pred ccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCC
Q 038105 548 RFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGW 627 (791)
Q Consensus 548 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 627 (791)
.+ .++|+.|++++|.+..... ....-...++.+++.... ........+..+++|++|++++|.+
T Consensus 190 -----------~~--~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 190 -----------DL--PETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp -----------SS--CSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred -----------cc--cCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcC
Confidence 12 1678889998887765431 111122356666666542 3334445688899999999999988
Q ss_pred CCceeecccccccccccccccCCCCEEEEecCCCcccccc--------hhcCCCCceEEEccCc
Q 038105 628 SGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF--------LVFAPNLKSISVTHCD 683 (791)
Q Consensus 628 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~--------l~~~~nL~~L~l~~c~ 683 (791)
. .+|..+.. +++|+.|+++++ .++.++. ....++|+.|++++++
T Consensus 254 ~-~lp~~l~~----------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 254 S-RVPAGLPD----------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp C-BCCTTGGG----------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred e-ecChhhhc----------CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 7 46766655 455555555554 2333321 1125678889998876
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.7e-19 Score=186.15 Aligned_cols=240 Identities=21% Similarity=0.264 Sum_probs=177.9
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccc--hhhhccCCcccEEeecCc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTIT--DDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~ 468 (791)
.+...+.++..+|..+. +++++|++++|.+..++. +..+++|++|++++|.+.... +..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 35667778888887665 689999999999998874 678999999999999887552 333567899999999999
Q ss_pred cccccccccccCcccccEEecCCCcccccch--hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEELPE--ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVY 546 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~ 546 (791)
.+..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.+..+. .+.++++|++|++++|.++..
T Consensus 89 -~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~- 165 (306)
T 2z66_A 89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQEN- 165 (306)
T ss_dssp -SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEGGG-
T ss_pred -ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccccc-
Confidence 677788889999999999999999987764 688999999999999987444444 478899999999999986541
Q ss_pred cccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccC
Q 038105 547 GRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCG 626 (791)
Q Consensus 547 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 626 (791)
..|..+..+++|+.|++++|.+... .+..+.++++|++|++++|.
T Consensus 166 --------~~~~~~~~l~~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 166 --------FLPDIFTELRNLTFLDLSQCQLEQL---------------------------SPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp --------EECSCCTTCTTCCEEECTTSCCCEE---------------------------CTTTTTTCTTCCEEECTTSC
T ss_pred --------cchhHHhhCcCCCEEECCCCCcCCc---------------------------CHHHhcCCCCCCEEECCCCc
Confidence 2445677888999999988866532 12446677888888888887
Q ss_pred CCCceeecccccccccccccccCCCCEEEEecCCCcccc-c-chhcC-CCCceEEEccCc
Q 038105 627 WSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHL-T-FLVFA-PNLKSISVTHCD 683 (791)
Q Consensus 627 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l-~-~l~~~-~nL~~L~l~~c~ 683 (791)
+.+..+..+. .+++|+.|+++++. +... + .+..+ ++|+.|++++++
T Consensus 211 l~~~~~~~~~----------~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 211 FFSLDTFPYK----------CLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CSBCCSGGGT----------TCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCccChhhcc----------CcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 7663222222 24566666666663 2222 1 23444 377777777654
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=7.2e-19 Score=203.12 Aligned_cols=127 Identities=23% Similarity=0.309 Sum_probs=113.2
Q ss_pred ccEEEEcCCCcccCCC-CccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAPA-DVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..++.+++.+..+|. .+..+++|++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 4578889999998874 6889999999999999999886 478999999999999999999998899999999999999
Q ss_pred ccccccccc-cccCcccccEEecCCCccc--ccchhhhcCCCCceeeccCcccc
Q 038105 468 IRMLQQLPM-GISKLVSLQLLDISNTEVE--ELPEELKALVNLKCLNLDWTDVL 518 (791)
Q Consensus 468 ~~~~~~lp~-~~~~l~~L~~L~L~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~ 518 (791)
| .+..+|. .|+.+++|++|++++|.++ .+|..++.+++|++|++++|.+.
T Consensus 134 N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 134 T-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp S-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred C-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9 5666665 5899999999999999997 45788999999999999999873
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=6.7e-20 Score=200.63 Aligned_cols=205 Identities=18% Similarity=0.161 Sum_probs=126.8
Q ss_pred EEEcCCCcccCCCCccCccceeEEEcccCCCC-CCC-CCCCCCCc-------------cEEEecCCCCcccchhhhccCC
Q 038105 394 LVYAGSGLTEAPADVRGWEMVRRLSLMRNSID-NLP-TVPTCPHL-------------LTLFLNDNELTTITDDFFQSMP 458 (791)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~l~-~~~~l~~L-------------~~L~l~~~~~~~~~~~~~~~l~ 458 (791)
+..+++.+..+|.++..++++++|++++|.+. .+| .+..+.+| +.|++++|.+..++. -.+
T Consensus 16 L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~----~~~ 91 (454)
T 1jl5_A 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPP 91 (454)
T ss_dssp ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS----CCT
T ss_pred hhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC----CcC
Confidence 44556677888888889999999999888775 445 45666654 889999998877665 247
Q ss_pred cccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeee
Q 038105 459 CLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMF 538 (791)
Q Consensus 459 ~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~ 538 (791)
+|++|++++| .+..+|.. +.+|++|++++|.++.+|.. .++|+.|++++|.+ ..+|. ++++++|++|+++
T Consensus 92 ~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l-~~lp~--~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQL-EKLPE--LQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCC-SSCCC--CTTCTTCCEEECC
T ss_pred CCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCC-CCCcc--cCCCCCCCEEECC
Confidence 8899999988 55567753 37889999999988877642 26899999999887 55884 7899999999999
Q ss_pred ecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccc
Q 038105 539 ATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLN 618 (791)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~ 618 (791)
+|.+++++. ...+|+.|++++|.+..++. ..-...++.+++..+.- ...+ . ..++|+
T Consensus 162 ~N~l~~lp~--------------~~~~L~~L~L~~n~l~~l~~----~~~l~~L~~L~l~~N~l-~~l~--~--~~~~L~ 218 (454)
T 1jl5_A 162 NNSLKKLPD--------------LPPSLEFIAAGNNQLEELPE----LQNLPFLTAIYADNNSL-KKLP--D--LPLSLE 218 (454)
T ss_dssp SSCCSCCCC--------------CCTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCC-SSCC--C--CCTTCC
T ss_pred CCcCcccCC--------------CcccccEEECcCCcCCcCcc----ccCCCCCCEEECCCCcC-CcCC--C--CcCccc
Confidence 988766322 12478899998888766431 11223344444444321 1111 1 124777
Q ss_pred eEEecccCCCCceeecccc
Q 038105 619 TLYFRSCGWSGGLKIDYKD 637 (791)
Q Consensus 619 ~L~l~~~~~~~~~~~~~~~ 637 (791)
+|++++|.+. .+| .+..
T Consensus 219 ~L~l~~n~l~-~lp-~~~~ 235 (454)
T 1jl5_A 219 SIVAGNNILE-ELP-ELQN 235 (454)
T ss_dssp EEECCSSCCS-SCC-CCTT
T ss_pred EEECcCCcCC-ccc-ccCC
Confidence 8888877766 354 3443
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=1.4e-18 Score=182.85 Aligned_cols=235 Identities=19% Similarity=0.210 Sum_probs=178.0
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
+.+...+.++..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|..+++|++|++++|
T Consensus 34 ~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 110 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN- 110 (330)
T ss_dssp TEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-
T ss_pred eEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-
Confidence 346677778888887665 68999999999999877 4789999999999999999987777999999999999999
Q ss_pred ccccccccccCcccccEEecCCCcccccch-hhhcCCCCceeeccCccccc--ccchhHhhcCcCCCeeeeeecCccccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLV--EVPQQLLSNFSRLRVLRMFATGIRSVY 546 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~~~ 546 (791)
.+..+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.+.. ..+. .+.++++|++|++++|.++.++
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT-GGGGCTTCCEEECCSSCCCSCC
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChh-hccCCCCcCEEECCCCccccCC
Confidence 6778887665 799999999999997765 48999999999999998732 3343 3789999999999999987643
Q ss_pred cccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccC
Q 038105 547 GRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCG 626 (791)
Q Consensus 547 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 626 (791)
. .+ .++|+.|++++|.+..... ........++.+++.... ........+..+++|++|++++|.
T Consensus 188 ~-----------~~--~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 188 Q-----------GL--PPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp S-----------SC--CTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred c-----------cc--cccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 3 11 2678888888887655321 111122345555555442 333344567889999999999998
Q ss_pred CCCceeecccccccccccccccCCCCEEEEecC
Q 038105 627 WSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSC 659 (791)
Q Consensus 627 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 659 (791)
+.. +|..+.. +++|+.|+++++
T Consensus 252 l~~-lp~~l~~----------l~~L~~L~l~~N 273 (330)
T 1xku_A 252 LVK-VPGGLAD----------HKYIQVVYLHNN 273 (330)
T ss_dssp CSS-CCTTTTT----------CSSCCEEECCSS
T ss_pred Ccc-CChhhcc----------CCCcCEEECCCC
Confidence 874 6665544 556677777665
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=4.7e-18 Score=191.60 Aligned_cols=154 Identities=24% Similarity=0.266 Sum_probs=129.6
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
...+..++.++..+|..+. ++++.|++++|.+..+|. .+++|++|++++|.++.++. .+++|++|++++| .
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSC-C
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCC-c
Confidence 4567888889999988776 799999999999998887 67999999999999887765 6799999999999 6
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..+|. .+++|++|++++|+++.+|.. +++|++|++++|.+ ..+|. .+++|+.|++++|.++.+
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~l----- 176 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSL----- 176 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCC-----
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCCC-----
Confidence 777876 578899999999999998864 48999999999987 66764 467899999999997763
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
| ..+++|+.|++++|.+..
T Consensus 177 ------~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 177 ------P---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp ------C---CCCTTCCEEECCSSCCSC
T ss_pred ------c---ccCCCCcEEECCCCCCCC
Confidence 2 346789999999887764
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=1.1e-18 Score=181.64 Aligned_cols=176 Identities=21% Similarity=0.263 Sum_probs=143.7
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccc---cccccCcccccEEecCC
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQL---PMGISKLVSLQLLDISN 491 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l---p~~~~~l~~L~~L~L~~ 491 (791)
+.++.+++.+..+|. .-.++|++|++++|.+..++...|.++++|++|++++| .+... |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 467888888888885 23479999999999999998888899999999999999 44433 56777899999999999
Q ss_pred CcccccchhhhcCCCCceeeccCcccccccch-hHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEE
Q 038105 492 TEVEELPEELKALVNLKCLNLDWTDVLVEVPQ-QLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 492 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
|.+..+|..+..+++|++|++++|.+ ..++. ..+..+++|++|++++|.+... .+..+..+++|+.|+
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVA----------FNGIFNGLSSLEVLK 156 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEEC----------STTTTTTCTTCCEEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCcc----------chhhcccCcCCCEEE
Confidence 99999998899999999999999987 55543 4478999999999999987653 345678889999999
Q ss_pred EEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 571 ITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
+++|.+... ..+..+..+++|++|++++|.+.+
T Consensus 157 l~~n~l~~~--------------------------~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 157 MAGNSFQEN--------------------------FLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp CTTCEEGGG--------------------------EECSCCTTCTTCCEEECTTSCCCE
T ss_pred CCCCccccc--------------------------cchhHHhhCcCCCEEECCCCCcCC
Confidence 988876430 112456778899999999998766
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.3e-18 Score=178.82 Aligned_cols=197 Identities=24% Similarity=0.372 Sum_probs=139.2
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|..+++|++|++++|..
T Consensus 15 ~~~c~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEEcCcCCcccCCcCCC--CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 35556667777766543 57888888888877765 367778888888888887777666677888888888888753
Q ss_pred cccc-cccccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 471 LQQL-PMGISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 471 ~~~l-p~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
+..+ |..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+ ..++...++.+++|++|++++|.++.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 169 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVP-- 169 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEEC--
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccC--
Confidence 5555 55677788888888888877765 44577788888888888876 5565555677888888888888766532
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.+.
T Consensus 170 --------~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 170 --------ERAFRGLHSLDRLLLHQNRVAHV---------------------------HPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp --------TTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSCCS
T ss_pred --------HHHhcCccccCEEECCCCccccc---------------------------CHhHccCcccccEeeCCCCcCC
Confidence 23466677788888777765432 1234566777778888777766
Q ss_pred C
Q 038105 629 G 629 (791)
Q Consensus 629 ~ 629 (791)
+
T Consensus 215 ~ 215 (285)
T 1ozn_A 215 A 215 (285)
T ss_dssp C
T ss_pred c
Confidence 5
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=2.4e-18 Score=189.34 Aligned_cols=243 Identities=17% Similarity=0.220 Sum_probs=187.4
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
..+.++.++..+..+|.- -.+++++|++++|.+..+.+..|.++++|++|++++|......|..+..+++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 345678888888888742 2379999999999999998888999999999999999544444577999999999999999
Q ss_pred cccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC-ccccccccccchhchHHHhcCCCCCcEEE
Q 038105 493 EVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG-IRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 493 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
.++.+|.. ++.+++|+.|++++|.+ ..+|...+.++++|++|++++|. +..+ -+..+..+++|+.|+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYI----------SEGAFEGLFNLKYLN 202 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEE----------CTTTTTTCTTCCEEE
T ss_pred cCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCcccc----------ChhhccCCCCCCEEE
Confidence 99988765 88999999999999987 67777668999999999999854 3332 123578899999999
Q ss_pred EEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCC
Q 038105 571 ITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRS 650 (791)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 650 (791)
+++|.+..+ +.+..+++|++|+|++|.+.+..|..+.. +++
T Consensus 203 L~~n~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------l~~ 243 (452)
T 3zyi_A 203 LGMCNIKDM-----------------------------PNLTPLVGLEELEMSGNHFPEIRPGSFHG----------LSS 243 (452)
T ss_dssp CTTSCCSSC-----------------------------CCCTTCTTCCEEECTTSCCSEECGGGGTT----------CTT
T ss_pred CCCCccccc-----------------------------ccccccccccEEECcCCcCcccCcccccC----------ccC
Confidence 988876532 23667889999999999998755555554 456
Q ss_pred CCEEEEecCCCccccc--chhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccc
Q 038105 651 LDKITVSSCRNLKHLT--FLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLK 720 (791)
Q Consensus 651 L~~L~l~~~~~L~~l~--~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 720 (791)
|+.|.+.++. +..+. .+..+++|+.|+|+++. ++.++. .....+++|+.|.+.+++
T Consensus 244 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN-LSSLPH------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCT------------TSSTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc-CCccCh------------HHhccccCCCEEEccCCC
Confidence 6666666653 33332 35667899999999873 443322 334567888999888654
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=4.1e-18 Score=175.12 Aligned_cols=219 Identities=16% Similarity=0.219 Sum_probs=175.9
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCc-
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE- 493 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~- 493 (791)
+.++.+++.+..+|. ...++|++|++++|.+..+++..|..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 568888888888874 335799999999999999998889999999999999995444447789999999999999997
Q ss_pred cccc-chhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEE
Q 038105 494 VEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEIT 572 (791)
Q Consensus 494 l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 572 (791)
+..+ |..+..+++|+.|++++|.+ ..++...+.++++|++|++++|.++.+. +..++.+++|+.|+++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALP----------DDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEECC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCcccccC----------HhHhccCCCccEEECC
Confidence 8877 66799999999999999988 5554445789999999999999987632 2457889999999999
Q ss_pred eechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCCC
Q 038105 573 FRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLD 652 (791)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~ 652 (791)
+|.+..++ ...+..+++|++|++++|.+.+..|..+. .+++|+
T Consensus 162 ~n~l~~~~---------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------~l~~L~ 204 (285)
T 1ozn_A 162 GNRISSVP---------------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFR----------DLGRLM 204 (285)
T ss_dssp SSCCCEEC---------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTT----------TCTTCC
T ss_pred CCcccccC---------------------------HHHhcCccccCEEECCCCcccccCHhHcc----------Cccccc
Confidence 88765322 23467789999999999998774444443 356788
Q ss_pred EEEEecCCCccccc--chhcCCCCceEEEccCc
Q 038105 653 KITVSSCRNLKHLT--FLVFAPNLKSISVTHCD 683 (791)
Q Consensus 653 ~L~l~~~~~L~~l~--~l~~~~nL~~L~l~~c~ 683 (791)
.|+++++ .++.++ .+..+++|+.|++++++
T Consensus 205 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFAN-NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence 8888877 455554 36778899999998765
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=187.05 Aligned_cols=243 Identities=16% Similarity=0.247 Sum_probs=186.4
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
..+.++..+..+..+|.. -.++++.|++++|.+..+++..|.++++|++|++++|......+..|..+++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 345788888888888852 2378999999999999998888999999999999999444444467999999999999999
Q ss_pred cccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC-ccccccccccchhchHHHhcCCCCCcEEE
Q 038105 493 EVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG-IRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 493 ~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
+++.+|. .+..+++|+.|++++|.+ ..+|...+.++++|++|++++|. +..+ .+..+.++++|+.|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYI----------SEGAFEGLSNLRYLN 191 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEE----------CTTTTTTCSSCCEEE
T ss_pred cCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCccee----------CcchhhcccccCeec
Confidence 9998876 489999999999999987 67777668999999999999854 3332 223578899999999
Q ss_pred EEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCC
Q 038105 571 ITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRS 650 (791)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 650 (791)
+++|.+..+ +.+..+++|++|+|++|.+.+..+..+.. +.+
T Consensus 192 L~~n~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------l~~ 232 (440)
T 3zyj_A 192 LAMCNLREI-----------------------------PNLTPLIKLDELDLSGNHLSAIRPGSFQG----------LMH 232 (440)
T ss_dssp CTTSCCSSC-----------------------------CCCTTCSSCCEEECTTSCCCEECTTTTTT----------CTT
T ss_pred CCCCcCccc-----------------------------cccCCCcccCEEECCCCccCccChhhhcc----------Ccc
Confidence 998876532 23677899999999999888754555544 456
Q ss_pred CCEEEEecCCCccccc--chhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccc
Q 038105 651 LDKITVSSCRNLKHLT--FLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLK 720 (791)
Q Consensus 651 L~~L~l~~~~~L~~l~--~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~ 720 (791)
|+.|.+.++ .++.+. .+..+++|+.|+|+++. ++.++. .....+++|+.|.+.+++
T Consensus 233 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN-LTLLPH------------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC-CCCCCT------------TTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC-CCccCh------------hHhccccCCCEEEcCCCC
Confidence 666666665 233332 35667899999999874 433321 334567888888887654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=9.2e-19 Score=182.77 Aligned_cols=264 Identities=18% Similarity=0.170 Sum_probs=169.9
Q ss_pred CccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 410 GWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
.+++++.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++| .+..+| ..++|++|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEE
Confidence 3567888888888887766 46778888888888888776655 778888888888888 455544 33788888
Q ss_pred ecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHh-cCCCCC
Q 038105 488 DISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEEL-LGLKHL 566 (791)
Q Consensus 488 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L 566 (791)
++++|.++.++.. .+++|+.|++++|.+ ..+++..++.+++|++|++++|.++.. .+..+ ..+++|
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L 171 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTV----------NFAELAASSDTL 171 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEECTTSCCCEE----------EGGGGGGGTTTC
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCCCC-CCccchhhhccCCCCEEECCCCCCCcc----------cHHHHhhccCcC
Confidence 8888888766543 467788888888877 445443467788888888888887653 12333 357788
Q ss_pred cEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccccccccccc
Q 038105 567 EVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPY 646 (791)
Q Consensus 567 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~ 646 (791)
+.|++++|.+... .....+++|++|++++|.+.+ +|+.+..
T Consensus 172 ~~L~L~~N~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--------- 212 (317)
T 3o53_A 172 EHLNLQYNFIYDV-----------------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQS--------- 212 (317)
T ss_dssp CEEECTTSCCCEE-----------------------------ECCCCCTTCCEEECCSSCCCE-ECGGGGG---------
T ss_pred CEEECCCCcCccc-----------------------------ccccccccCCEEECCCCcCCc-chhhhcc---------
Confidence 8888887766532 112346788888888887765 4544443
Q ss_pred ccCCCCEEEEecCCCccccc-chhcCCCCceEEEccCcch-hHHhhcCCCCCCCCcccccCCcCcccceecccccccccc
Q 038105 647 VFRSLDKITVSSCRNLKHLT-FLVFAPNLKSISVTHCDDM-EEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKS 724 (791)
Q Consensus 647 ~~~~L~~L~l~~~~~L~~l~-~l~~~~nL~~L~l~~c~~L-~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 724 (791)
+++|+.|+++++ .++.++ .+..+++|+.|++++++-- ..+. .....+++|+.|.+.++..++.
T Consensus 213 -l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-------------~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 213 -AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-------------DFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHH-------------HHHHTCHHHHHHHHHHHHHHHS
T ss_pred -cCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHH-------------HHHhccccceEEECCCchhccC
Confidence 455666666665 344443 2556678888888877633 1211 1233566777777776655554
Q ss_pred cccCCCCCCCccEEEEcCCCCCC
Q 038105 725 IYWKPLPLPRLKELEVEDCHSLK 747 (791)
Q Consensus 725 ~~~~~~~~~~L~~L~i~~c~~L~ 747 (791)
........+.+....-..|..|.
T Consensus 278 ~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 278 QNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp SSSCCCSSTTCEEETTEEEBCCT
T ss_pred CchhccCCCceecccceeeccCC
Confidence 33322223333333333454443
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=5.2e-17 Score=183.07 Aligned_cols=255 Identities=20% Similarity=0.175 Sum_probs=185.1
Q ss_pred cceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC
Q 038105 412 EMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN 491 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 491 (791)
.+++.|+++++.+..+|.... ++|++|++++|.+..++. .+++|++|++++| .++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 458899999999999885322 899999999999987776 5789999999999 6778886 779999999999
Q ss_pred CcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEE
Q 038105 492 TEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEI 571 (791)
Q Consensus 492 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (791)
|.++.+|. .+++|+.|++++|.+ ..+|. .+++|++|++++|.++.++. .+.+|+.|++
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l-~~lp~----~l~~L~~L~Ls~N~l~~l~~--------------~~~~L~~L~L 168 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQL-TSLPV----LPPGLQELSVSDNQLASLPA--------------LPSELCKLWA 168 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCCCC--------------CCTTCCEEEC
T ss_pred CcCCCCCC---CCCCcCEEECCCCCC-CcCCC----CCCCCCEEECcCCcCCCcCC--------------ccCCCCEEEC
Confidence 99999987 678999999999987 67886 35999999999999876421 2468999999
Q ss_pred EeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCC
Q 038105 572 TFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSL 651 (791)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 651 (791)
++|.+..++ .....++.++++.+. ...++ ..+++|+.|++++|.+.. +|. .+++|
T Consensus 169 ~~N~l~~l~------~~~~~L~~L~Ls~N~-l~~l~----~~~~~L~~L~L~~N~l~~-l~~-------------~~~~L 223 (622)
T 3g06_A 169 YNNQLTSLP------MLPSGLQELSVSDNQ-LASLP----TLPSELYKLWAYNNRLTS-LPA-------------LPSGL 223 (622)
T ss_dssp CSSCCSCCC------CCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSS-CCC-------------CCTTC
T ss_pred CCCCCCCCc------ccCCCCcEEECCCCC-CCCCC----CccchhhEEECcCCcccc-cCC-------------CCCCC
Confidence 999887643 223445555555432 11111 123677777777776654 221 23667
Q ss_pred CEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccccccccCCCC
Q 038105 652 DKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYWKPLP 731 (791)
Q Consensus 652 ~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 731 (791)
+.|.++++ .++.++ ..+++|+.|++++|. ++. ++..+++|+.|.+.++ .++.++.....
T Consensus 224 ~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~----------------lp~~~~~L~~L~Ls~N-~L~~lp~~l~~ 282 (622)
T 3g06_A 224 KELIVSGN-RLTSLP--VLPSELKELMVSGNR-LTS----------------LPMLPSGLLSLSVYRN-QLTRLPESLIH 282 (622)
T ss_dssp CEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSC----------------CCCCCTTCCEEECCSS-CCCSCCGGGGG
T ss_pred CEEEccCC-ccCcCC--CCCCcCcEEECCCCC-CCc----------------CCcccccCcEEeCCCC-CCCcCCHHHhh
Confidence 77777776 455555 456778888888763 322 2225678888888876 46666655555
Q ss_pred CCCccEEEEcCC
Q 038105 732 LPRLKELEVEDC 743 (791)
Q Consensus 732 ~~~L~~L~i~~c 743 (791)
+++|+.|+++++
T Consensus 283 l~~L~~L~L~~N 294 (622)
T 3g06_A 283 LSSETTVNLEGN 294 (622)
T ss_dssp SCTTCEEECCSC
T ss_pred ccccCEEEecCC
Confidence 666666666665
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.4e-17 Score=169.39 Aligned_cols=197 Identities=24% Similarity=0.452 Sum_probs=161.6
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+..+..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n- 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN- 95 (270)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-
T ss_pred CEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-
Confidence 356777888888887665 68999999999998887 4788999999999999999888888889999999999999
Q ss_pred ccccccc-cccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccc
Q 038105 470 MLQQLPM-GISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYG 547 (791)
Q Consensus 470 ~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 547 (791)
.+..+|. .+..+++|++|++++|.++.+|.. ++.+++|+.|++++|.+ ..+|...++.+++|++|++++|.++.+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVP- 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcEeC-
Confidence 5555554 578899999999999999977654 78999999999999987 6777766789999999999999877642
Q ss_pred ccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCC
Q 038105 548 RFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGW 627 (791)
Q Consensus 548 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 627 (791)
+..+..+++|+.|++++|.+..++ ...+..+++|++|++++|.+
T Consensus 174 ---------~~~~~~l~~L~~L~L~~N~l~~~~---------------------------~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 ---------EGAFDKLTELKTLKLDNNQLKRVP---------------------------EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp ---------TTTTTTCTTCCEEECCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCB
T ss_pred ---------hhHhccCCCcCEEECCCCcCCcCC---------------------------HHHhccccCCCEEEecCCCe
Confidence 235778899999999888765322 23466788999999999876
Q ss_pred CC
Q 038105 628 SG 629 (791)
Q Consensus 628 ~~ 629 (791)
.-
T Consensus 218 ~c 219 (270)
T 2o6q_A 218 DC 219 (270)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=5.9e-18 Score=172.41 Aligned_cols=198 Identities=20% Similarity=0.343 Sum_probs=115.6
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQ 472 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 472 (791)
.+...+..+..+ ..+..++++++|++++|.+..++.+..+++|++|++++|.+..+++..|..+++|++|++++| .+.
T Consensus 45 ~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 122 (272)
T 3rfs_A 45 QIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQ 122 (272)
T ss_dssp EEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred eeeeCCCCcccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCC
Confidence 344455555544 345556666666666666666655666666666666666666666655566666666666666 333
Q ss_pred cccc-cccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 473 QLPM-GISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 473 ~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
.+|. .++.+++|++|++++|.++.+|.. ++.+++|+.|++++|.+ ..++...++.+++|++|++++|.++..
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----- 196 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSV----- 196 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC-----
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECCCCcCCcc-----
Confidence 3332 356666666666666666655443 45666666666666665 344444455666666666666665542
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCc
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGG 630 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 630 (791)
.+..+..+++|+.|++++|.+. +.+++|+.|++..|.+.+.
T Consensus 197 -----~~~~~~~l~~L~~L~l~~N~~~----------------------------------~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 197 -----PDGVFDRLTSLQYIWLHDNPWD----------------------------------CTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp -----CTTTTTTCTTCCEEECCSSCBC----------------------------------CCTTTTHHHHHHHHHTGGG
T ss_pred -----CHHHHhCCcCCCEEEccCCCcc----------------------------------ccCcHHHHHHHHHHhCCCc
Confidence 1233455666666666655432 2344566666666666666
Q ss_pred eeecccc
Q 038105 631 LKIDYKD 637 (791)
Q Consensus 631 ~~~~~~~ 637 (791)
+|..++.
T Consensus 238 ip~~~~~ 244 (272)
T 3rfs_A 238 VRNSAGS 244 (272)
T ss_dssp BBCTTSC
T ss_pred ccCcccc
Confidence 6655543
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.9e-17 Score=167.93 Aligned_cols=176 Identities=23% Similarity=0.285 Sum_probs=134.1
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+..+..+|..+. .++++|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++|..
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 44556677778887665 57999999999988776 578889999999999998888887788999999999999944
Q ss_pred cccccccccCcccccEEecCCCcccccch-hhhcCCCCceeeccCccccc-ccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLV-EVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
....|..+..+++|++|++++|.+..++. .++.+++|+.|++++|.+.. .+|.. ++++++|++|++++|.++....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~- 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC- 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH-
Confidence 44444678899999999999998887765 58889999999999998743 25655 7889999999999998776422
Q ss_pred cccchhchHHHhcCCCCCc-EEEEEeechhh
Q 038105 549 FSSWYENVAEELLGLKHLE-VLEITFRSFEA 578 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~ 578 (791)
.....+..++.|. .|++++|.+..
T Consensus 167 ------~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 167 ------TDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp ------GGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred ------HHhhhhhhccccceeeecCCCcccc
Confidence 1223334444444 67777776643
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.9e-17 Score=169.99 Aligned_cols=200 Identities=19% Similarity=0.217 Sum_probs=159.7
Q ss_pred ccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 408 VRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
+..+++++.++++++.+..+|... .+++++|++++|.+....+..|..+++|++|++++| .+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 456678899999999999887422 378999999999999888888999999999999999 56666654 789999999
Q ss_pred ecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCc
Q 038105 488 DISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLE 567 (791)
Q Consensus 488 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 567 (791)
++++|.++.+|..+..+++|+.|++++|.+ +.+|...+.++++|++|++++|.++.++ +..+..+++|+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~ 151 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTLP----------PGLLTPTPKLE 151 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCCC----------TTTTTTCTTCC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCccC----------hhhcccccCCC
Confidence 999999999998899999999999999987 6676655889999999999999987642 23467788999
Q ss_pred EEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccc
Q 038105 568 VLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYV 647 (791)
Q Consensus 568 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 647 (791)
.|++++|.+..++ ...+.++++|++|++++|.+.. +|..+..
T Consensus 152 ~L~L~~N~l~~l~---------------------------~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~---------- 193 (290)
T 1p9a_G 152 KLSLANNNLTELP---------------------------AGLLNGLENLDTLLLQENSLYT-IPKGFFG---------- 193 (290)
T ss_dssp EEECTTSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTTT----------
T ss_pred EEECCCCcCCccC---------------------------HHHhcCcCCCCEEECCCCcCCc-cChhhcc----------
Confidence 9999888765322 2345678899999999998874 5655443
Q ss_pred cCCCCEEEEecC
Q 038105 648 FRSLDKITVSSC 659 (791)
Q Consensus 648 ~~~L~~L~l~~~ 659 (791)
..+|+.+.+.+.
T Consensus 194 ~~~L~~l~L~~N 205 (290)
T 1p9a_G 194 SHLLPFAFLHGN 205 (290)
T ss_dssp TCCCSEEECCSC
T ss_pred cccCCeEEeCCC
Confidence 335666666554
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=3.5e-17 Score=169.78 Aligned_cols=191 Identities=21% Similarity=0.308 Sum_probs=148.6
Q ss_pred ccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 408 VRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
...+++++.|+++++.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+| .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 44577889999999998888888888999999999998887776 788999999999998 566665 68888999999
Q ss_pred ecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCc
Q 038105 488 DISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLE 567 (791)
Q Consensus 488 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 567 (791)
++++|.++.++. +..+++|+.|++++|.+ ..++. ++.+++|++|++++|.++.+ +. +..+++|+
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~-----------~~-l~~l~~L~ 176 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSDL-----------TP-LANLSKLT 176 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCC-----------GG-GTTCTTCC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCCC-----------hh-hcCCCCCC
Confidence 999998888764 88899999999999887 56665 68899999999999887652 22 77888899
Q ss_pred EEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccc
Q 038105 568 VLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYV 647 (791)
Q Consensus 568 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 647 (791)
.|++++|.+...+ .+..+++|++|++++|.+.+. + .+ ..
T Consensus 177 ~L~l~~n~l~~~~-----------------------------~l~~l~~L~~L~L~~N~l~~~-~-~l----------~~ 215 (308)
T 1h6u_A 177 TLKADDNKISDIS-----------------------------PLASLPNLIEVHLKNNQISDV-S-PL----------AN 215 (308)
T ss_dssp EEECCSSCCCCCG-----------------------------GGGGCTTCCEEECTTSCCCBC-G-GG----------TT
T ss_pred EEECCCCccCcCh-----------------------------hhcCCCCCCEEEccCCccCcc-c-cc----------cC
Confidence 9998888765422 255677888888888877652 2 12 23
Q ss_pred cCCCCEEEEecC
Q 038105 648 FRSLDKITVSSC 659 (791)
Q Consensus 648 ~~~L~~L~l~~~ 659 (791)
+++|+.|.++++
T Consensus 216 l~~L~~L~l~~N 227 (308)
T 1h6u_A 216 TSNLFIVTLTNQ 227 (308)
T ss_dssp CTTCCEEEEEEE
T ss_pred CCCCCEEEccCC
Confidence 556666666665
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.6e-17 Score=173.37 Aligned_cols=266 Identities=17% Similarity=0.140 Sum_probs=184.7
Q ss_pred eeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC
Q 038105 414 VRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN 491 (791)
Q Consensus 414 l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 491 (791)
++..+++.+.+...+ .+..+++|++|++++|.+...++..|..+++|++|++++| .+...+. ++.+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 444455555443222 1345678999999999999988888999999999999999 4554443 88999999999999
Q ss_pred CcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEE
Q 038105 492 TEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEI 571 (791)
Q Consensus 492 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (791)
|.++.+| ..++|+.|++++|.+ ..++. ..+++|++|++++|.++.. .+..+..+++|+.|++
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l-~~~~~---~~~~~L~~L~l~~N~l~~~----------~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNI-SRVSC---SRGQGKKNIYLANNKITML----------RDLDEGCRSRVQYLDL 151 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCC-SEEEE---CCCSSCEEEECCSSCCCSG----------GGBCTGGGSSEEEEEC
T ss_pred Ccccccc----CCCCcCEEECCCCcc-CCcCc---cccCCCCEEECCCCCCCCc----------cchhhhccCCCCEEEC
Confidence 9988776 348999999999987 55553 3578899999999987763 2335677889999999
Q ss_pred EeechhhHHHhhhcccccCCcccceeecCCCCCccccccc-ccccccceEEecccCCCCceeecccccccccccccccCC
Q 038105 572 TFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADL-ANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRS 650 (791)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 650 (791)
++|.+.... +..+ ..+++|++|++++|.+.+ ++. .. .+++
T Consensus 152 s~N~l~~~~---------------------------~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~----------~l~~ 192 (317)
T 3o53_A 152 KLNEIDTVN---------------------------FAELAASSDTLEHLNLQYNFIYD-VKG-QV----------VFAK 192 (317)
T ss_dssp TTSCCCEEE---------------------------GGGGGGGTTTCCEEECTTSCCCE-EEC-CC----------CCTT
T ss_pred CCCCCCccc---------------------------HHHHhhccCcCCEEECCCCcCcc-ccc-cc----------cccc
Confidence 888765421 1223 467889999999998776 222 11 2567
Q ss_pred CCEEEEecCCCcccc-cchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccc-cccccC
Q 038105 651 LDKITVSSCRNLKHL-TFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSL-KSIYWK 728 (791)
Q Consensus 651 L~~L~l~~~~~L~~l-~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l-~~~~~~ 728 (791)
|+.|+++++ .++.+ +.+..+++|+.|++++|. ++.++. ....+++|+.|.+.+++-. ...+..
T Consensus 193 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~-------------~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 193 LKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK-------------ALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT-------------TCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred CCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhh-------------HhhcCCCCCEEEccCCCccCcCHHHH
Confidence 777777776 34444 336667888888888874 433321 2345678888888876533 123333
Q ss_pred CCCCCCccEEEEcCCCCCCCCCCCC
Q 038105 729 PLPLPRLKELEVEDCHSLKKLPLDS 753 (791)
Q Consensus 729 ~~~~~~L~~L~i~~c~~L~~L~l~~ 753 (791)
...+++|+.|.+.+|..++..+...
T Consensus 258 ~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 258 FSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred HhccccceEEECCCchhccCCchhc
Confidence 3456777777777666666554433
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=1.9e-18 Score=179.98 Aligned_cols=248 Identities=16% Similarity=0.131 Sum_probs=155.3
Q ss_pred CccceeEEEcccCCCCCCCC-CCCCCCccEEEecCCCCcc-cchhhhc-------cCCcccEEeecCccccccccccc--
Q 038105 410 GWEMVRRLSLMRNSIDNLPT-VPTCPHLLTLFLNDNELTT-ITDDFFQ-------SMPCLTVLKMSDIRMLQQLPMGI-- 478 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~-~~~l~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~lp~~~-- 478 (791)
..++++.+++++|.+ .+|. +.. .|+.|++++|.+.. ..+..+. .+++|++|++++|...+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 445677777788877 5552 222 27778888877643 1222232 57888888888885555677765
Q ss_pred cCcccccEEecCCCcccccchhhhcC-----CCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccch
Q 038105 479 SKLVSLQLLDISNTEVEELPEELKAL-----VNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWY 553 (791)
Q Consensus 479 ~~l~~L~~L~L~~~~l~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 553 (791)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|.+ ..++...++++++|++|++++|.+.+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------- 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGE-------- 188 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHH--------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcc--------
Confidence 78888888888888888777777766 8888888888887 455533478888888888888875441
Q ss_pred hchHHHh--cCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCce
Q 038105 554 ENVAEEL--LGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGL 631 (791)
Q Consensus 554 ~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 631 (791)
..++..+ ..+++|+.|++++|.+...+.... ..+.++++|++|++++|.+.+..
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCS------------------------ALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH------------------------HHHHTTCCCSEEECTTSCCCSSC
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHH------------------------HHHhcCCCCCEEECCCCcCCccc
Confidence 1234455 778888888888887764332211 12335567777777777766643
Q ss_pred eecccccccccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCccc
Q 038105 632 KIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKL 711 (791)
Q Consensus 632 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L 711 (791)
|.... ....+|+.|+++++ .++.++.-. .++|+.|+++++. ++.+ | ....+++|
T Consensus 245 ~~~~~---------~~l~~L~~L~Ls~N-~l~~ip~~~-~~~L~~L~Ls~N~-l~~~---------p-----~~~~l~~L 298 (312)
T 1wwl_A 245 GAPSC---------DWPSQLNSLNLSFT-GLKQVPKGL-PAKLSVLDLSYNR-LDRN---------P-----SPDELPQV 298 (312)
T ss_dssp CCSCC---------CCCTTCCEEECTTS-CCSSCCSSC-CSEEEEEECCSSC-CCSC---------C-----CTTTSCEE
T ss_pred chhhh---------hhcCCCCEEECCCC-ccChhhhhc-cCCceEEECCCCC-CCCC---------h-----hHhhCCCC
Confidence 21111 12356666666665 234443211 1667777777653 2221 1 13456677
Q ss_pred ceeccccc
Q 038105 712 QHLELWGL 719 (791)
Q Consensus 712 ~~L~l~~~ 719 (791)
+.|.+.+.
T Consensus 299 ~~L~L~~N 306 (312)
T 1wwl_A 299 GNLSLKGN 306 (312)
T ss_dssp EEEECTTC
T ss_pred CEEeccCC
Confidence 77777664
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.2e-17 Score=182.46 Aligned_cols=213 Identities=19% Similarity=0.189 Sum_probs=159.3
Q ss_pred ccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEe
Q 038105 411 WEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLD 488 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 488 (791)
+++++.|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++| .++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 458999999999998876 57889999999999999877666 788999999999998 5665553 38899999
Q ss_pred cCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhc-CCCCCc
Q 038105 489 ISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELL-GLKHLE 567 (791)
Q Consensus 489 L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~ 567 (791)
+++|.++.++.. .+++|+.|++++|.+.+..|.. ++++++|++|++++|.++.. .|..+. .+++|+
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~----------~~~~l~~~l~~L~ 172 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTV----------NFAELAASSDTLE 172 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEE----------EGGGGGGGTTTCC
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCc----------ChHHHhhhCCccc
Confidence 999998877653 5688999999999874444443 78899999999999987763 344454 688999
Q ss_pred EEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccc
Q 038105 568 VLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYV 647 (791)
Q Consensus 568 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~ 647 (791)
.|++++|.+.+. .....+++|++|+|++|.+.+ +|+.+..
T Consensus 173 ~L~Ls~N~l~~~-----------------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~---------- 212 (487)
T 3oja_A 173 HLNLQYNFIYDV-----------------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQS---------- 212 (487)
T ss_dssp EEECTTSCCCEE-----------------------------ECCCCCTTCCEEECCSSCCCE-ECGGGGG----------
T ss_pred EEecCCCccccc-----------------------------cccccCCCCCEEECCCCCCCC-CCHhHcC----------
Confidence 999988877542 123357888999999888776 5555544
Q ss_pred cCCCCEEEEecCCCccccc-chhcCCCCceEEEccCcc
Q 038105 648 FRSLDKITVSSCRNLKHLT-FLVFAPNLKSISVTHCDD 684 (791)
Q Consensus 648 ~~~L~~L~l~~~~~L~~l~-~l~~~~nL~~L~l~~c~~ 684 (791)
+++|+.|+++++ .+..++ .+..+++|+.|++++++-
T Consensus 213 l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp GTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCC
Confidence 455666666655 233333 355677888888888763
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=3.8e-17 Score=166.45 Aligned_cols=182 Identities=20% Similarity=0.325 Sum_probs=148.5
Q ss_pred CccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCccccc
Q 038105 407 DVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQ 485 (791)
Q Consensus 407 ~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~ 485 (791)
....+.+++.|++.++.+..++.+..+++|++|++++|.+...+ .+..+++|++|++++| .+..+|. .++.+++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 44567889999999999999888899999999999999988764 4889999999999999 4555554 478999999
Q ss_pred EEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCC
Q 038105 486 LLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK 564 (791)
Q Consensus 486 ~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 564 (791)
+|++++|.++.+|.. ++.+++|+.|++++|.+ ..+|...++.+++|++|++++|.++.. .+..++.++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~l~ 181 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSL----------PEGVFDKLT 181 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCC----------CTTTTTTCT
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCCCcCcc----------CHHHhcCCc
Confidence 999999999987665 78999999999999987 567766578999999999999987763 234467888
Q ss_pred CCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 565 HLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 565 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
+|+.|++++|.+.... ...+..+++|++|++++|.+.+
T Consensus 182 ~L~~L~L~~N~l~~~~---------------------------~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVP---------------------------DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TCCEEECCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCCcCCccC---------------------------HHHHhCCcCCCEEEccCCCccc
Confidence 9999999888765321 2346778899999999887654
No 75
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=6.5e-16 Score=163.97 Aligned_cols=294 Identities=14% Similarity=0.087 Sum_probs=179.1
Q ss_pred CCCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc------CHHHHH
Q 038105 47 TEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL------QLEKIQ 120 (791)
Q Consensus 47 ~~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~ 120 (791)
.+..||||+.+++++.+++..+ +++.|+|++|+|||||+++++++. . ++|+++.... +...+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHH
Confidence 3567999999999999998764 799999999999999999999875 1 7788875443 556666
Q ss_pred HHHHHHhCCC--------------C--CCcccccHHHHHHHHHHHhCC-ceEEEEEcCccCccc---------ccccccC
Q 038105 121 ETIGKKIGLY--------------T--DSWKDKRLEEKAQDIFKTLSK-KKFALLLDDLWERVD---------LKKVGVP 174 (791)
Q Consensus 121 ~~i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~---------~~~~~~~ 174 (791)
..+.+.+... . .........+..+.+.+.... ++++|||||++.... +..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 6666654320 0 000123455566666655543 389999999976443 1112221
Q ss_pred CCCCCCCCCCcEEEEEcCcHHHHhhc------------cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHH
Q 038105 175 LPSRSNSPKNSAVVFTTRFVDVCGRM------------EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTV 242 (791)
Q Consensus 175 l~~~~~~~~~~~iivTtR~~~~~~~~------------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i 242 (791)
+.. ..+.++|+|++........ .....+++.+|+.+|+.+++.+.+...+... ..+.+..+
T Consensus 159 ~~~----~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i 231 (350)
T 2qen_A 159 YDS----LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEA 231 (350)
T ss_dssp HHH----CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHH
T ss_pred HHh----cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHH
Confidence 111 2367899998865431111 1124799999999999999988654322111 25678899
Q ss_pred HHHcCCCchHHHHHHHHhhcCCCHHHHHH-HHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCCCCcc
Q 038105 243 AKECDGLPLALITIGRAMAYKKTPEEWRY-AIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDYS 321 (791)
Q Consensus 243 ~~~~~g~Plal~~~~~~l~~~~~~~~w~~-~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~ 321 (791)
++.++|+|+++..++..+....+...+.. ..+...... .+.+... .+ + ++ ..+..+..+|. . .
T Consensus 232 ~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l---~~-~-~~-~~~~~l~~la~-g-~-- 295 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI------MGELEEL---RR-R-SP-RYVDILRAIAL-G-Y-- 295 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHHHHH---HH-H-CH-HHHHHHHHHHT-T-C--
T ss_pred HHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH------HHHHHHH---Hh-C-Ch-hHHHHHHHHHh-C-C--
Confidence 99999999999998876432222222211 111110000 0011111 11 2 55 77888888887 2 1
Q ss_pred cChHhHHHHHHHcCcccccccchhhhhHHHHHHHHHhcccccccCCcEEe-chHHHHHHH
Q 038105 322 IYKRDLIDCWICEGFLDEAKFGTQNQGYHIVTTLVRACLLEEVEDDQVKM-HDVIRDMAL 380 (791)
Q Consensus 322 ~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~-h~li~~~~~ 380 (791)
.+...+....... .- .........+++.|.+.+++...+ ..|.+ |.+++.+.+
T Consensus 296 ~~~~~l~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 NRWSLIRDYLAVK-GT----KIPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp CSHHHHHHHHHHT-TC----CCCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred CCHHHHHHHHHHH-hC----CCCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 3434443322111 00 012345677899999999997653 45554 677776643
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=6.2e-17 Score=165.45 Aligned_cols=199 Identities=18% Similarity=0.250 Sum_probs=162.9
Q ss_pred ccEEEEcCCCcccCCC-CccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 391 EGFLVYAGSGLTEAPA-DVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
-..+..+++.+..++. .+..+.++++|++++|.+..++ .+..+++|++|++++|.+...++..|.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 3567778888888875 6788999999999999998876 478899999999999999999888899999999999999
Q ss_pred ccccccccc-cccCcccccEEecCCCcccc--cchhhhcCCCCceeeccCcccccccchhHhhcCcCCC----eeeeeec
Q 038105 468 IRMLQQLPM-GISKLVSLQLLDISNTEVEE--LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLR----VLRMFAT 540 (791)
Q Consensus 468 ~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~----~L~l~~~ 540 (791)
| .+..++. .++.+++|++|++++|.++. +|..++.+++|+.|++++|.+ ..++...+..+++|+ +|++++|
T Consensus 110 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 110 T-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp S-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred C-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHHHhhhhhhccccceeeecCCC
Confidence 9 4555544 69999999999999999986 688999999999999999987 555544477777777 8899999
Q ss_pred CccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceE
Q 038105 541 GIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTL 620 (791)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L 620 (791)
.++.+.. ......+|+.|++++|.+..++ ...+.++++|++|
T Consensus 188 ~l~~~~~-----------~~~~~~~L~~L~L~~n~l~~~~---------------------------~~~~~~l~~L~~L 229 (276)
T 2z62_A 188 PMNFIQP-----------GAFKEIRLKELALDTNQLKSVP---------------------------DGIFDRLTSLQKI 229 (276)
T ss_dssp CCCEECT-----------TSSCSCCEEEEECCSSCCSCCC---------------------------TTTTTTCCSCCEE
T ss_pred cccccCc-----------cccCCCcccEEECCCCceeecC---------------------------HhHhcccccccEE
Confidence 9876422 2333447999999988765422 2346778999999
Q ss_pred EecccCCCC
Q 038105 621 YFRSCGWSG 629 (791)
Q Consensus 621 ~l~~~~~~~ 629 (791)
++++|.+..
T Consensus 230 ~l~~N~~~c 238 (276)
T 2z62_A 230 WLHTNPWDC 238 (276)
T ss_dssp ECCSSCBCC
T ss_pred EccCCcccc
Confidence 999998765
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.3e-16 Score=165.49 Aligned_cols=189 Identities=20% Similarity=0.293 Sum_probs=163.0
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+...+..+..+| .+..+++++.|++++|.+..++.+..+++|++|++++|.+...+ .+..+++|++|++++| .
T Consensus 43 L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n-~ 118 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTST-Q 118 (308)
T ss_dssp CCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTS-C
T ss_pred cCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCC-C
Confidence 356777888888885 68889999999999999999888999999999999999988875 3889999999999999 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..+|. +..+++|++|++++|.++.++. ++.+++|+.|++++|.+ ..++. +..+++|++|++++|.++.+
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~----- 188 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKISDI----- 188 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred CCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh--hcCCCCCCEEECCCCccCcC-----
Confidence 666764 8999999999999999998876 89999999999999987 66766 78999999999999998763
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
+ .+..+++|+.|++++|.+.... .+..+++|++|++++|.+.+
T Consensus 189 ------~-~l~~l~~L~~L~L~~N~l~~~~-----------------------------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 ------S-PLASLPNLIEVHLKNNQISDVS-----------------------------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------G-GGGGCTTCCEEECTTSCCCBCG-----------------------------GGTTCTTCCEEEEEEEEEEC
T ss_pred ------h-hhcCCCCCCEEEccCCccCccc-----------------------------cccCCCCCCEEEccCCeeec
Confidence 2 2788999999999998775422 26778999999999998765
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=3.3e-17 Score=163.52 Aligned_cols=138 Identities=16% Similarity=0.362 Sum_probs=85.5
Q ss_pred cccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCC-CcccchhhhccCCcccEEeecC-cccccccc-
Q 038105 401 LTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNE-LTTITDDFFQSMPCLTVLKMSD-IRMLQQLP- 475 (791)
Q Consensus 401 ~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~lp- 475 (791)
+..+|. +. .+++.|++++|.+..++. +..+++|++|++++|. +..+++..|.++++|++|++++ | .+..+|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDP 98 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCH
Confidence 555555 32 366667777766666553 5566667777777665 6666665566666777777766 4 444444
Q ss_pred ccccCcccccEEecCCCcccccchhhhcCCCCc---eeeccCc-ccccccchhHhhcCcCCC-eeeeeecCccc
Q 038105 476 MGISKLVSLQLLDISNTEVEELPEELKALVNLK---CLNLDWT-DVLVEVPQQLLSNFSRLR-VLRMFATGIRS 544 (791)
Q Consensus 476 ~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~---~L~l~~~-~~~~~~p~~~~~~l~~L~-~L~l~~~~~~~ 544 (791)
..+..+++|++|++++|.++.+|. ++.+++|+ .|++++| .+ +.+|...+.++++|+ +|++++|.++.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~~n~l~~ 170 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLYNNGFTS 170 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcch-hhcCcccccchhcceeEEEcCCCCCcc
Confidence 345666667777776666666665 56666666 6666666 44 555554456666666 66666666554
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=8.7e-17 Score=165.00 Aligned_cols=193 Identities=25% Similarity=0.320 Sum_probs=164.0
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+.++..+|..+. ++++.|++++|.+..++ .+..+++|++|++++|.+..++.. ..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N- 87 (290)
T 1p9a_G 13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHN- 87 (290)
T ss_dssp CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSS-
T ss_pred cEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCC-
Confidence 456777888999988775 78999999999998765 578899999999999999887763 78999999999999
Q ss_pred ccccccccccCcccccEEecCCCcccccc-hhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEELP-EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
.+..+|..+..+++|++|++++|+++.+| ..+..+++|+.|++++|.+ ..+|...+..+++|++|++++|.++.++.
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~- 165 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPA- 165 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSCCCT-
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcCCccCH-
Confidence 77899999999999999999999999887 4589999999999999987 67777778899999999999999876422
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
..+..+++|+.|++++|.+..++ ..+..+.+|++|++++|.+.
T Consensus 166 ---------~~~~~l~~L~~L~L~~N~l~~ip----------------------------~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 ---------GLLNGLENLDTLLLQENSLYTIP----------------------------KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCCCCC----------------------------TTTTTTCCCSEEECCSCCBC
T ss_pred ---------HHhcCcCCCCEEECCCCcCCccC----------------------------hhhcccccCCeEEeCCCCcc
Confidence 34677999999999999876432 23445678999999998764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=1.9e-16 Score=161.04 Aligned_cols=197 Identities=19% Similarity=0.280 Sum_probs=155.7
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc-ccCcccccEEecCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISN 491 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~ 491 (791)
..+.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 4678999999999888522 268999999999999998877999999999999999 56677655 58899999999999
Q ss_pred Ccccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEE
Q 038105 492 TEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 492 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
|.++.+|.. +..+++|+.|++++|.+ ..++...++.+++|++|++++|.++.+. +..+..+++|+.|+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~ 163 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLP----------KGVFDKLTSLKELR 163 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEE
T ss_pred CcCCcCCHhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCCccC----------HhHccCCcccceeE
Confidence 999988764 68999999999999987 6666665789999999999999987642 23467889999999
Q ss_pred EEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCC
Q 038105 571 ITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRS 650 (791)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 650 (791)
+++|.+...+ ...+.++++|++|++++|.+.+ ++.... ..+++
T Consensus 164 L~~n~l~~~~---------------------------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~---------~~l~~ 206 (270)
T 2o6q_A 164 LYNNQLKRVP---------------------------EGAFDKLTELKTLKLDNNQLKR-VPEGAF---------DSLEK 206 (270)
T ss_dssp CCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTT---------TTCTT
T ss_pred ecCCcCcEeC---------------------------hhHhccCCCcCEEECCCCcCCc-CCHHHh---------ccccC
Confidence 9888765321 2346778899999999998775 333211 12456
Q ss_pred CCEEEEecC
Q 038105 651 LDKITVSSC 659 (791)
Q Consensus 651 L~~L~l~~~ 659 (791)
|+.|.+.+.
T Consensus 207 L~~L~l~~N 215 (270)
T 2o6q_A 207 LKMLQLQEN 215 (270)
T ss_dssp CCEEECCSS
T ss_pred CCEEEecCC
Confidence 666666554
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=8.2e-18 Score=186.04 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=80.0
Q ss_pred cceeEEEcccCCCCCCC--C-CCCCCCccEEEecCCCCccc----chhhhccCCcccEEeecCccccccccccc-cCcc-
Q 038105 412 EMVRRLSLMRNSIDNLP--T-VPTCPHLLTLFLNDNELTTI----TDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLV- 482 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~--~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~- 482 (791)
++++.|+++++.+...+ . +..+++|++|++++|.+... .+..+..+++|++|++++|......+..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35556666666554322 1 34455666666666665432 12334555666666666663222222222 2233
Q ss_pred ---cccEEecCCCccc-----ccchhhhcCCCCceeeccCcccccccchhH----hhcCcCCCeeeeeecCccccccccc
Q 038105 483 ---SLQLLDISNTEVE-----ELPEELKALVNLKCLNLDWTDVLVEVPQQL----LSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 483 ---~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~----~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+|++|++++|.++ .+|..+..+++|++|++++|.+....+..+ ....++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence 4666666666555 235555666666666666665432222211 112345666666666554321
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechh
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
...++..+..+++|+.|++++|.+.
T Consensus 159 --~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 159 --CEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred --HHHHHHHHhhCCCCCEEECcCCCcc
Confidence 1124455555666666666666554
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=1.7e-16 Score=167.92 Aligned_cols=236 Identities=19% Similarity=0.218 Sum_probs=164.3
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCc-ccchhhhccCCcccEEe-ecCc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELT-TITDDFFQSMPCLTVLK-MSDI 468 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~-l~~~ 468 (791)
.+...+.++..+|..+. .+++.|++++|.+..++. +..+++|++|++++|.+. .++...|.++++|+++. +++|
T Consensus 13 ~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45566777888877663 578888888888887763 677888888888888753 45556677777776544 4444
Q ss_pred cccccc-cccccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCc-CCCeeeeeecCcccc
Q 038105 469 RMLQQL-PMGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFS-RLRVLRMFATGIRSV 545 (791)
Q Consensus 469 ~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~-~L~~L~l~~~~~~~~ 545 (791)
.+..+ |..+..+++|++|++++|.+..+|.. +....++..|++.++.....++...+..+. .++.|++++|.++.+
T Consensus 91 -~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 -NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp -TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred -cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 55555 45577788888888888888766543 445566777777665544666654455554 577788888877653
Q ss_pred ccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEeccc
Q 038105 546 YGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSC 625 (791)
Q Consensus 546 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 625 (791)
. .......+|+.|++..+ +..+.++...+.++++|++|++++|
T Consensus 170 ~-----------~~~f~~~~L~~l~l~~~--------------------------n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 170 H-----------NSAFNGTQLDELNLSDN--------------------------NNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp C-----------TTSSTTEEEEEEECTTC--------------------------TTCCCCCTTTTTTEECCSEEECTTS
T ss_pred C-----------hhhccccchhHHhhccC--------------------------CcccCCCHHHhccCcccchhhcCCC
Confidence 2 23333445666665432 2233344456788999999999999
Q ss_pred CCCCceeecccccccccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEcc
Q 038105 626 GWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTH 681 (791)
Q Consensus 626 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~ 681 (791)
.+.. +|.. .+.+|++|...++.+++.++.+..+++|+.+++++
T Consensus 213 ~l~~-lp~~------------~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 RIHS-LPSY------------GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-CCSS------------SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred CcCc-cChh------------hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 8775 4432 36788999999999999999999999999999975
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=4.9e-16 Score=156.13 Aligned_cols=173 Identities=21% Similarity=0.334 Sum_probs=150.5
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+..+..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+...++..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN- 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred eEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-
Confidence 457788889999998776 68999999999998876 4788999999999999999999888999999999999999
Q ss_pred cccccc-ccccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcccccc
Q 038105 470 MLQQLP-MGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYG 547 (791)
Q Consensus 470 ~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~ 547 (791)
.+..+| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+ ..+|...++.+++|++|++++|.++.+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 170 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSV-- 170 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC--
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCcc--
Confidence 455555 5678999999999999999988776 68999999999999987 677765589999999999999998764
Q ss_pred ccccchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 548 RFSSWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 548 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
.+..+..+++|+.|++++|.+.+
T Consensus 171 --------~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 --------PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp --------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred --------CHHHHhCCCCCCEEEeeCCceeC
Confidence 23467889999999999998865
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3.6e-16 Score=157.16 Aligned_cols=179 Identities=20% Similarity=0.281 Sum_probs=150.0
Q ss_pred cceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC
Q 038105 412 EMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN 491 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 491 (791)
...+.++++++.+..+|... .++++.|++++|.+..+.+..|.++++|++|++++|......|..+..+++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI-PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCC-CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 35678999999999988532 27899999999999999988899999999999999954444555689999999999999
Q ss_pred Ccccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEE
Q 038105 492 TEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 492 ~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
|.++.+|. .++.+++|+.|++++|.+ ..+|...+..+++|++|++++|.++.+. +..+..+++|+.|+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIP----------AGAFDKLTNLQTLS 161 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEE
T ss_pred CcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccC----------HHHcCcCcCCCEEE
Confidence 99998875 478999999999999987 6777766789999999999999987632 24578899999999
Q ss_pred EEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 571 ITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
+++|.+...+ ...+..+++|++|++++|.+..
T Consensus 162 L~~N~l~~~~---------------------------~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQSVP---------------------------HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSCCC---------------------------TTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCccC---------------------------HHHHhCCCCCCEEEeeCCceeC
Confidence 9998775422 2356788999999999998765
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=1.5e-15 Score=165.18 Aligned_cols=302 Identities=11% Similarity=0.036 Sum_probs=180.7
Q ss_pred CCcccchHHHHHHHHHHh-cc---C--CCceEEEE--EcCCCCcHHHHHHHHHhcccCCC--CCC-CEEEEEEeCCccCH
Q 038105 48 EPTVVGLQSQLEQVWRCL-VQ---E--PAAGIIGL--YGMGGVGKTTLLTQINNKFVDNP--TDF-DYVIWVVVSKDLQL 116 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L-~~---~--~~~~vv~i--~G~gGiGKTtLa~~~~~~~~~~~--~~f-~~~~wv~~~~~~~~ 116 (791)
+..|+||+.+++++.+++ .. + ...+.+.| +|++|+||||||+++++...... ..+ ..++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 477999999999999998 42 2 24567888 99999999999999998762100 012 24688888777788
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCccc--------ccccccCCCCCCCCC--CC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVD--------LKKVGVPLPSRSNSP--KN 184 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~--------~~~~~~~l~~~~~~~--~~ 184 (791)
..++..++..++..... ...+..+....+.+.+. +++++|||||++.... +..+...+......+ .+
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 89999999998764321 12234555666666654 6799999999976432 222212221100012 34
Q ss_pred cEEEEEcCcHHHHhhc---------cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcC------CC
Q 038105 185 SAVVFTTRFVDVCGRM---------EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECD------GL 249 (791)
Q Consensus 185 ~~iivTtR~~~~~~~~---------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~ 249 (791)
..+|+||+........ .....+++.+++.+++.+++.+.+.... ....-..+.+..+++.++ |+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCc
Confidence 5678788755432111 1122399999999999999987654221 111122567889999999 99
Q ss_pred chHHHHHHHHhh------cC--CCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCC--CC
Q 038105 250 PLALITIGRAMA------YK--KTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYP--ED 319 (791)
Q Consensus 250 Plal~~~~~~l~------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~--~~ 319 (791)
|..+..+..... .. -+.+.+..+..... . ...+...+..||+ ..+.++..++.+. .+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSI-HELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCH-HHHHHHHHHHHHHhcCC
Confidence 976555543211 11 12333333222110 0 2334557788998 7888888888653 22
Q ss_pred cccChHhHHHHHHHcC-cccccccchhhhhHHHHHHHHHhcccccc
Q 038105 320 YSIYKRDLIDCWICEG-FLDEAKFGTQNQGYHIVTTLVRACLLEEV 364 (791)
Q Consensus 320 ~~~~~~~l~~~w~~~g-~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 364 (791)
..++...+...+.... -..............+++.|...+++...
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 3444444444332100 00000112235566789999999999664
No 86
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.66 E-value=4.8e-15 Score=157.74 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=171.9
Q ss_pred CCCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-----cCHHHHHH
Q 038105 47 TEPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-----LQLEKIQE 121 (791)
Q Consensus 47 ~~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 121 (791)
.+..||||+.++++|.+ +.. +++.|+|++|+|||+|++++++.. .. .++|+++... .+......
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINEL---NL---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHH---TC---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhc---CC---CEEEEEchhhccccCCCHHHHHH
Confidence 35679999999999999 764 699999999999999999999886 22 2588887643 23444444
Q ss_pred HHHHHhC------------------CCCCC--c-------ccccHHHHHHHHHHHhCCceEEEEEcCccCccc-----cc
Q 038105 122 TIGKKIG------------------LYTDS--W-------KDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD-----LK 169 (791)
Q Consensus 122 ~i~~~l~------------------~~~~~--~-------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~~ 169 (791)
.+.+.+. ..... . ......+..+.+.+... ++++|||||++.... +.
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH
Confidence 4443321 00000 0 01234445555544333 499999999965432 11
Q ss_pred ccccCCCCCCCCCCCcEEEEEcCcHHHHhh----------cc--ccceEEeccCChHHHHHHHHHHhCccccCCCCChHH
Q 038105 170 KVGVPLPSRSNSPKNSAVVFTTRFVDVCGR----------ME--DRRMFKVACLSDEDAWELFREKVGEETIESHHSIPE 237 (791)
Q Consensus 170 ~~~~~l~~~~~~~~~~~iivTtR~~~~~~~----------~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~ 237 (791)
.....+.. ...+.++|+|+|....... .. ....+++.+|+.+|+.+++.+.+...+.... .
T Consensus 159 ~~l~~~~~---~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~--- 231 (357)
T 2fna_A 159 PALAYAYD---NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D--- 231 (357)
T ss_dssp HHHHHHHH---HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C---
T ss_pred HHHHHHHH---cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c---
Confidence 11111111 1236789999997643221 11 1257999999999999999886643221111 1
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhhcCCCHHHHHHH-HHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccC
Q 038105 238 LAQTVAKECDGLPLALITIGRAMAYKKTPEEWRYA-IEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLY 316 (791)
Q Consensus 238 ~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f 316 (791)
...|++.++|+|+++..++..+....+...|... .+...... ...+...+.- -..+++ ..+..+..+|+
T Consensus 232 -~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~-~~~l~~-~~~~~l~~la~- 301 (357)
T 2fna_A 232 -YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLI------LKEFENFLHG-REIARK-RYLNIMRTLSK- 301 (357)
T ss_dssp -HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHHHHHHTT-CGGGHH-HHHHHHHHHTT-
T ss_pred -HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHH------HHHHHHHhhc-cccccH-HHHHHHHHHHc-
Confidence 2789999999999999998776432333333221 11110000 0011111100 015776 78889988888
Q ss_pred CCCcccChHhHHHHHH-HcCcccccccchhhhhHHHHHHHHHhcccccccCCcEE-echHHHHH
Q 038105 317 PEDYSIYKRDLIDCWI-CEGFLDEAKFGTQNQGYHIVTTLVRACLLEEVEDDQVK-MHDVIRDM 378 (791)
Q Consensus 317 ~~~~~~~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~-~h~li~~~ 378 (791)
. . +...+..... ..|. .........+++.|...+++...+ ..|. .|.+++++
T Consensus 302 g--~--~~~~l~~~~~~~~g~-----~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 C--G--KWSDVKRALELEEGI-----EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLA 355 (357)
T ss_dssp C--B--CHHHHHHHHHHHHCS-----CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHH
T ss_pred C--C--CHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHh
Confidence 2 1 3333332110 0110 012345677899999999997654 4455 57777765
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=3e-16 Score=161.16 Aligned_cols=174 Identities=21% Similarity=0.328 Sum_probs=143.5
Q ss_pred CccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccE
Q 038105 407 DVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQL 486 (791)
Q Consensus 407 ~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~ 486 (791)
....+.+++.|++++|.+..++.+..+++|++|++++|.+...++ +..+++|++|++++| .+..+| .++.+++|++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKS 116 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCE
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCCE
Confidence 345678899999999999988888889999999999999888776 789999999999998 566666 4889999999
Q ss_pred EecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCC
Q 038105 487 LDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHL 566 (791)
Q Consensus 487 L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 566 (791)
|++++|.++.++ .+..+++|+.|++++|.+ ..++. ++.+++|++|++++|.++.. +. +..+++|
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~L~~N~l~~~-----------~~-l~~l~~L 180 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQISDI-----------VP-LAGLTKL 180 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSSCCCCC-----------GG-GTTCTTC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCcC-Ccchh--hccCCCCCEEEccCCccccc-----------hh-hcCCCcc
Confidence 999999988874 688899999999999987 55643 78999999999999987662 22 7888999
Q ss_pred cEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 567 EVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 567 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
+.|++++|.+..+ +.+..+++|+.|++++|.+..
T Consensus 181 ~~L~L~~N~i~~l-----------------------------~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKNHISDL-----------------------------RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSSCCCBC-----------------------------GGGTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCCcCCCC-----------------------------hhhccCCCCCEEECcCCcccC
Confidence 9999988876542 236678889999999887655
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=2.5e-16 Score=157.15 Aligned_cols=141 Identities=24% Similarity=0.306 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEEecCC-Ccccccch-
Q 038105 423 SIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISN-TEVEELPE- 499 (791)
Q Consensus 423 ~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~-~~l~~lp~- 499 (791)
.+..+|. -..+|++|++++|.+..+++..|..+++|++|++++|..++.+|. .+..+++|++|++++ |.++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3666776 345899999999999988887788999999999999953666665 688899999999998 88988764
Q ss_pred hhhcCCCCceeeccCcccccccchhHhhcCcCCC---eeeeeec-CccccccccccchhchHHHhcCCCCCc-EEEEEee
Q 038105 500 ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLR---VLRMFAT-GIRSVYGRFSSWYENVAEELLGLKHLE-VLEITFR 574 (791)
Q Consensus 500 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~ 574 (791)
.+..+++|+.|++++|.+ ..+|. ++.+++|+ +|++++| .++.++ +..+..+++|+ .|++++|
T Consensus 100 ~f~~l~~L~~L~l~~n~l-~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~----------~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGL-KMFPD--LTKVYSTDIFFILEITDNPYMTSIP----------VNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp SEECCTTCCEEEEEEECC-CSCCC--CTTCCBCCSEEEEEEESCTTCCEEC----------TTTTTTTBSSEEEEECCSC
T ss_pred HhCCCCCCCEEeCCCCCC-ccccc--cccccccccccEEECCCCcchhhcC----------cccccchhcceeEEEcCCC
Confidence 578899999999999987 56776 67888888 8999988 766532 23467778888 8888777
Q ss_pred chhh
Q 038105 575 SFEA 578 (791)
Q Consensus 575 ~~~~ 578 (791)
.+..
T Consensus 167 ~l~~ 170 (239)
T 2xwt_C 167 GFTS 170 (239)
T ss_dssp CCCE
T ss_pred CCcc
Confidence 6543
No 89
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=3e-17 Score=181.52 Aligned_cols=330 Identities=16% Similarity=0.143 Sum_probs=202.0
Q ss_pred cEEEEcCCCcc-----cCCCCccCccceeEEEcccCCCCCC--CCC-CCCC----CccEEEecCCCCccc----chhhhc
Q 038105 392 GFLVYAGSGLT-----EAPADVRGWEMVRRLSLMRNSIDNL--PTV-PTCP----HLLTLFLNDNELTTI----TDDFFQ 455 (791)
Q Consensus 392 ~~~~~~~~~~~-----~~~~~~~~~~~l~~l~l~~~~~~~l--~~~-~~l~----~L~~L~l~~~~~~~~----~~~~~~ 455 (791)
..+...+..+. .++..+..++++++|++++|.+... ..+ ..++ +|++|++++|.+... .+..+.
T Consensus 31 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 110 (461)
T 1z7x_W 31 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110 (461)
T ss_dssp SEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT
T ss_pred cEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc
Confidence 34555555544 3344556678899999999887541 111 1222 799999999987743 356678
Q ss_pred cCCcccEEeecCcccccccccccc-----CcccccEEecCCCcccc-----cchhhhcCCCCceeeccCcccccccchhH
Q 038105 456 SMPCLTVLKMSDIRMLQQLPMGIS-----KLVSLQLLDISNTEVEE-----LPEELKALVNLKCLNLDWTDVLVEVPQQL 525 (791)
Q Consensus 456 ~l~~L~~L~l~~~~~~~~lp~~~~-----~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~~p~~~ 525 (791)
.+++|++|++++|......+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+....+..+
T Consensus 111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 190 (461)
T 1z7x_W 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVL 190 (461)
T ss_dssp SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence 899999999999854333333222 35679999999998873 45667788999999999988643323221
Q ss_pred h----hcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHH--Hhhhc-ccccCCcccceee
Q 038105 526 L----SNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQ--TFLSS-QKLRSCTQAPFLY 598 (791)
Q Consensus 526 ~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~l~~l~l~ 598 (791)
. ..+++|++|++++|.++... ...++..+..+++|+.|++++|.+.... .+... ......++.+++.
T Consensus 191 ~~~l~~~~~~L~~L~L~~n~l~~~~------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 191 CQGLKDSPCQLEALKLESCGVTSDN------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHSCCCCCEEECTTSCCBTTH------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHhcCCCCceEEEccCCCCcHHH------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 1 13569999999999876521 1236777888999999999999876532 11111 1123456677776
Q ss_pred cCCCCCcc----cccccccccccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccc------cch
Q 038105 599 KFDREESI----DVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHL------TFL 668 (791)
Q Consensus 599 ~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l------~~l 668 (791)
.+. .+.. ....+.++++|++|++++|.+.+..+..+... +....++|+.|.+++|. +... ..+
T Consensus 265 ~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-----l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 337 (461)
T 1z7x_W 265 ECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET-----LLEPGCQLESLWVKSCS-FTAACCSHFSSVL 337 (461)
T ss_dssp TSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH-----HTSTTCCCCEEECTTSC-CBGGGHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH-----hccCCccceeeEcCCCC-CchHHHHHHHHHH
Confidence 662 2221 12345567889999999887654322222110 11123588999998885 4432 235
Q ss_pred hcCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceeccccccccc-----ccccCCCCCCCccEEEEcCC
Q 038105 669 VFAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLK-----SIYWKPLPLPRLKELEVEDC 743 (791)
Q Consensus 669 ~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~i~~c 743 (791)
..+++|+.|++++|. +.+.... .+........++|+.|.+.+|. +. .++.....+++|++|++++|
T Consensus 338 ~~~~~L~~L~Ls~n~-i~~~~~~-------~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 338 AQNRFLLELQISNNR-LEDAGVR-------ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHCSSCCEEECCSSB-CHHHHHH-------HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred hhCCCccEEEccCCc-cccccHH-------HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC
Confidence 567899999999884 5443220 0111112235689999998874 43 22222223455555555443
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.1e-16 Score=174.63 Aligned_cols=212 Identities=15% Similarity=0.162 Sum_probs=170.9
Q ss_pred ccEEEEcCCCcccCC-CCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 391 EGFLVYAGSGLTEAP-ADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
-..+..+++.+..++ ..+..+++|++|++++|.+...+.+..+++|++|++++|.+..+++ .++|++|++++|
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N- 109 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANN- 109 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSS-
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCC-
Confidence 456788888888876 5788999999999999999876678999999999999999876653 489999999999
Q ss_pred ccccccccccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 470 MLQQLPMGISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 470 ~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
.+..+|. ..+++|++|++++|.++.+ |..++.+++|+.|++++|.+.+..|..+...+++|++|++++|.++..+.
T Consensus 110 ~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~- 186 (487)
T 3oja_A 110 NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG- 186 (487)
T ss_dssp CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-
T ss_pred cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-
Confidence 5555543 3568999999999999976 55789999999999999998666676644589999999999999877422
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS 628 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 628 (791)
+..+++|+.|++++|.+.+++ +.+..+++|++|++++|.+.
T Consensus 187 -----------~~~l~~L~~L~Ls~N~l~~~~----------------------------~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 187 -----------QVVFAKLKTLDLSSNKLAFMG----------------------------PEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp -----------CCCCTTCCEEECCSSCCCEEC----------------------------GGGGGGTTCSEEECTTSCCC
T ss_pred -----------cccCCCCCEEECCCCCCCCCC----------------------------HhHcCCCCccEEEecCCcCc
Confidence 335889999999999876432 34677889999999999887
Q ss_pred CceeecccccccccccccccCCCCEEEEecCCC
Q 038105 629 GGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRN 661 (791)
Q Consensus 629 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 661 (791)
+ +|..+. .+++|+.|++++++-
T Consensus 228 ~-lp~~l~----------~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 228 L-IEKALR----------FSQNLEHFDLRGNGF 249 (487)
T ss_dssp E-ECTTCC----------CCTTCCEEECTTCCB
T ss_pred c-cchhhc----------cCCCCCEEEcCCCCC
Confidence 5 565543 356778888877653
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=1.9e-16 Score=181.06 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=75.3
Q ss_pred CccceeEEEcccCCCCCCC------CCCCCCCccEEEecCCCCcccc----hhhhccCCcccEEeecCcccccccccccc
Q 038105 410 GWEMVRRLSLMRNSIDNLP------TVPTCPHLLTLFLNDNELTTIT----DDFFQSMPCLTVLKMSDIRMLQQLPMGIS 479 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 479 (791)
.+++|+.|++++|.+.... ....+++|++|++++|.+.... +..+.++++|++|++++| .+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 3456666666666543321 1124556666666666654222 222445666666666665 3444555555
Q ss_pred CcccccEEecCCCcc----cccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhc
Q 038105 480 KLVSLQLLDISNTEV----EELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYEN 555 (791)
Q Consensus 480 ~l~~L~~L~L~~~~l----~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 555 (791)
.+++|++|+++.... ...+..+..+++|+.|+++++.. ..+|.. +..+++|++|++++|.++.. .
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~-~~~~~~L~~L~Ls~~~l~~~---------~ 309 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPIL-FPFAAQIRKLDLLYALLETE---------D 309 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGG-GGGGGGCCEEEETTCCCCHH---------H
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHH-HhhcCCCcEEecCCCcCCHH---------H
Confidence 566666666653211 12223344555555555554422 334432 45566666666666553321 1
Q ss_pred hHHHhcCCCCCcEEEEE
Q 038105 556 VAEELLGLKHLEVLEIT 572 (791)
Q Consensus 556 ~~~~l~~l~~L~~L~l~ 572 (791)
+...+..+++|+.|+++
T Consensus 310 ~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhCcCCCEEecc
Confidence 22334555666666665
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.3e-15 Score=146.85 Aligned_cols=155 Identities=15% Similarity=0.262 Sum_probs=132.3
Q ss_pred ccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 408 VRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
...+++++.|++++|.+..++.+..+++|++|++++|.+...+ .+..+++|++|++++|......|..++.+++|++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3567899999999999999898889999999999999776654 38899999999999996555678889999999999
Q ss_pred ecCCCcccc-cchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCC
Q 038105 488 DISNTEVEE-LPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHL 566 (791)
Q Consensus 488 ~L~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 566 (791)
++++|.++. .|..++.+++|++|++++|...+.+|. +..+++|++|++++|.++.+ + .+..+++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~-----------~-~l~~l~~L 183 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY-----------R-GIEDFPKL 183 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC-----------T-TGGGCSSC
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh-----------H-HhccCCCC
Confidence 999999984 678899999999999999985588874 79999999999999997662 2 57889999
Q ss_pred cEEEEEeechhh
Q 038105 567 EVLEITFRSFEA 578 (791)
Q Consensus 567 ~~L~l~~~~~~~ 578 (791)
+.|++++|.+..
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999998753
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.6e-16 Score=165.35 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=115.4
Q ss_pred CccceeEEEcccCCCCC-CCC-C--CCCCCccEEEecCCCCcccchhhhccC-----CcccEEeecCccccccccccccC
Q 038105 410 GWEMVRRLSLMRNSIDN-LPT-V--PTCPHLLTLFLNDNELTTITDDFFQSM-----PCLTVLKMSDIRMLQQLPMGISK 480 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~-l~~-~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~lp~~~~~ 480 (791)
.++++++|++++|.+.. +|. + ..+++|++|++++|.+...+ ..+..+ ++|++|++++|+.....|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46788888888888873 443 3 77888999999988887773 445655 88899999888444444467888
Q ss_pred cccccEEecCCCcccc---cchhh--hcCCCCceeeccCccccc--ccchhHhhcCcCCCeeeeeecCccccccccccch
Q 038105 481 LVSLQLLDISNTEVEE---LPEEL--KALVNLKCLNLDWTDVLV--EVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWY 553 (791)
Q Consensus 481 l~~L~~L~L~~~~l~~---lp~~~--~~l~~L~~L~l~~~~~~~--~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 553 (791)
+++|++|++++|++.. +|..+ +.+++|+.|++++|.+.+ .++..++.++++|++|++++|.++....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------ 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc------
Confidence 8889999998887652 34454 788889999998887731 4444545678889999998888766321
Q ss_pred hchHHHhcCCCCCcEEEEEeechhh
Q 038105 554 ENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 554 ~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
...+..+++|+.|++++|.+..
T Consensus 246 ---~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 246 ---APSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp ---CSCCCCCTTCCEEECTTSCCSS
T ss_pred ---hhhhhhcCCCCEEECCCCccCh
Confidence 1234456788888888887653
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.6e-15 Score=170.77 Aligned_cols=173 Identities=22% Similarity=0.340 Sum_probs=133.7
Q ss_pred ccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 408 VRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
...+.+|+.|+++++.+..++.+..+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 44567888888888888888888888888888888888877776 778888888888888 566665 68888888888
Q ss_pred ecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCc
Q 038105 488 DISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLE 567 (791)
Q Consensus 488 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 567 (791)
+|++|.+..++ .+..+++|+.|+|++|.+ ..++. ++.+++|++|++++|.++.+ .+ +..+++|+
T Consensus 115 ~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~--l~~l~~L~~L~Ls~N~l~~~----------~~--l~~l~~L~ 178 (605)
T 1m9s_A 115 SLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQISDI----------VP--LAGLTKLQ 178 (605)
T ss_dssp ECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GGSCTTCSEEECCSSCCCCC----------GG--GTTCTTCC
T ss_pred EecCCCCCCCc-cccCCCccCEEECCCCcc-CCchh--hcccCCCCEEECcCCcCCCc----------hh--hccCCCCC
Confidence 88888888764 578888888888888876 45543 68888888888888887652 22 77888888
Q ss_pred EEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 568 VLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 568 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
.|++++|.+..+ +.+..+++|+.|+|++|.+.+
T Consensus 179 ~L~Ls~N~i~~l-----------------------------~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 179 NLYLSKNHISDL-----------------------------RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EEECCSSCCCBC-----------------------------GGGTTCTTCSEEECCSEEEEC
T ss_pred EEECcCCCCCCC-----------------------------hHHccCCCCCEEEccCCcCcC
Confidence 888888876542 235667778888888776655
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=6.2e-16 Score=163.10 Aligned_cols=105 Identities=19% Similarity=0.113 Sum_probs=44.3
Q ss_pred CCccEEEecCCCCcccchhhhccCCcccEEeecCcccccc-ccccccCcccccEEecCCCccc-ccchhhhcCCCCceee
Q 038105 434 PHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQ-LPMGISKLVSLQLLDISNTEVE-ELPEELKALVNLKCLN 511 (791)
Q Consensus 434 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-lp~~~~~l~~L~~L~L~~~~l~-~lp~~~~~l~~L~~L~ 511 (791)
++++.|++++|.+....+. +..+++|++|++++|..... +|..+..+++|++|++++|.++ ..|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444333333 22344444444444422212 3434444444444444444444 3334444444444454
Q ss_pred ccCc-cccc-ccchhHhhcCcCCCeeeeeec
Q 038105 512 LDWT-DVLV-EVPQQLLSNFSRLRVLRMFAT 540 (791)
Q Consensus 512 l~~~-~~~~-~~p~~~~~~l~~L~~L~l~~~ 540 (791)
+++| .+.. .++. .+.++++|++|++++|
T Consensus 149 L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 149 LSGCSGFSEFALQT-LLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred CCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence 4444 2211 1222 1344444555555444
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.2e-15 Score=146.71 Aligned_cols=175 Identities=22% Similarity=0.315 Sum_probs=115.0
Q ss_pred EEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEEecCCCcc
Q 038105 416 RLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISNTEV 494 (791)
Q Consensus 416 ~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l 494 (791)
.++.+++.+..+|. ...++|++|++++|.+..+++..|..+++|++|++++| .+..+|. .+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 45555555555552 22356777777777777666666677777777777777 4445544 356777777777777777
Q ss_pred cccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEe
Q 038105 495 EELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITF 573 (791)
Q Consensus 495 ~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 573 (791)
+.+|.. ++.+++|+.|++++|.+ ..++...+..+++|++|++++|.++.+. +..+..+++|+.|++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~----------~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVP----------DGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCS
T ss_pred CccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccceeC----------HHHhccCCCccEEEecC
Confidence 766554 56777777777777766 4555554667777777777777765531 22356677777777776
Q ss_pred echhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccc
Q 038105 574 RSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKD 637 (791)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 637 (791)
|.+. +.+++|++|+++.|.+.+.+|..++.
T Consensus 158 N~~~----------------------------------~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 158 NPWD----------------------------------CTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp CCBC----------------------------------CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CCee----------------------------------cCCCCHHHHHHHHHhCCceeeccCcc
Confidence 6432 23456777788888888777766554
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=8.4e-16 Score=162.07 Aligned_cols=228 Identities=15% Similarity=0.167 Sum_probs=160.7
Q ss_pred cceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCccc-chhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 412 EMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTI-TDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
.+++.++++++.+...+ .+..+++|++|++++|.+... .+..+..+++|++|++++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67888999988876643 567789999999999987654 5566889999999999999655577778889999999999
Q ss_pred CCC-ccc--ccchhhhcCCCCceeeccCc-ccccc-cchhHhhcCc-CCCeeeeeecC--ccccccccccchhchHHHhc
Q 038105 490 SNT-EVE--ELPEELKALVNLKCLNLDWT-DVLVE-VPQQLLSNFS-RLRVLRMFATG--IRSVYGRFSSWYENVAEELL 561 (791)
Q Consensus 490 ~~~-~l~--~lp~~~~~l~~L~~L~l~~~-~~~~~-~p~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~l~ 561 (791)
++| .++ .++..+..+++|++|++++| .+... ++. .+..++ +|++|++++|. ++. ..++..+.
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~~~~~~---------~~l~~~~~ 219 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQK---------SDLSTLVR 219 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCH---------HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCcccCCH---------HHHHHHHh
Confidence 999 677 47777889999999999999 66433 444 368899 99999999984 321 24677788
Q ss_pred CCCCCcEEEEEeec-hhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeeccccccc
Q 038105 562 GLKHLEVLEITFRS-FEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQ 640 (791)
Q Consensus 562 ~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 640 (791)
.+++|+.|++++|. +... .+..+.++++|++|++++|.... +..+..
T Consensus 220 ~~~~L~~L~l~~~~~l~~~---------------------------~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~--- 267 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKND---------------------------CFQEFFQLNYLQHLSLSRCYDII--PETLLE--- 267 (336)
T ss_dssp HCTTCSEEECTTCTTCCGG---------------------------GGGGGGGCTTCCEEECTTCTTCC--GGGGGG---
T ss_pred hCCCCCEEeCCCCCcCCHH---------------------------HHHHHhCCCCCCEeeCCCCCCCC--HHHHHH---
Confidence 89999999998886 3221 12345667888888888885221 221111
Q ss_pred ccccccccCCCCEEEEecCCCcccccchhcCCCCceEEEccCcchhHH
Q 038105 641 KSRQPYVFRSLDKITVSSCRNLKHLTFLVFAPNLKSISVTHCDDMEEI 688 (791)
Q Consensus 641 l~~l~~~~~~L~~L~l~~~~~L~~l~~l~~~~nL~~L~l~~c~~L~~l 688 (791)
...+++|+.|.+.+|..-..+..+. .+|..|+++ |+.++..
T Consensus 268 ----l~~~~~L~~L~l~~~i~~~~~~~l~--~~l~~L~l~-~n~l~~~ 308 (336)
T 2ast_B 268 ----LGEIPTLKTLQVFGIVPDGTLQLLK--EALPHLQIN-CSHFTTI 308 (336)
T ss_dssp ----GGGCTTCCEEECTTSSCTTCHHHHH--HHSTTSEES-CCCSCCT
T ss_pred ----HhcCCCCCEEeccCccCHHHHHHHH--hhCcceEEe-cccCccc
Confidence 1236788888888872211223232 234445565 3445544
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=5e-16 Score=177.66 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=95.6
Q ss_pred CccceeEEEcccCCCCC-----CCCC-CCCCCccEEEecCCCCcccch----hhhccCCcccEEeecCcccccccccccc
Q 038105 410 GWEMVRRLSLMRNSIDN-----LPTV-PTCPHLLTLFLNDNELTTITD----DFFQSMPCLTVLKMSDIRMLQQLPMGIS 479 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~-----l~~~-~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 479 (791)
.+++|+.|++++|.+.. ++.+ ..+++|++|++++|. ..+.. ..+..+++|++|++++|..++.+|..+.
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 56788888888887544 2222 367788888888886 22222 2234578888888888865666777777
Q ss_pred CcccccEEecCCC-------cccccchhhhcCCCCcee-eccCcccccccchhHhhcCcCCCeeeeeecCcccccccccc
Q 038105 480 KLVSLQLLDISNT-------EVEELPEELKALVNLKCL-NLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSS 551 (791)
Q Consensus 480 ~l~~L~~L~L~~~-------~l~~lp~~~~~l~~L~~L-~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 551 (791)
.+++|++|++..+ .+..++..+.++++|+.| .+.+... ..++.. +..+++|++|++++|.++.
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~~~L~~L~L~~~~l~~------- 303 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVCSRLTTLNLSYATVQS------- 303 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHHTTCCEEECTTCCCCH-------
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHH-HHhhCCCCEEEccCCCCCH-------
Confidence 8888888886544 233455556666666666 3333222 334432 3567777777777776432
Q ss_pred chhchHHHhcCCCCCcEEEEEee
Q 038105 552 WYENVAEELLGLKHLEVLEITFR 574 (791)
Q Consensus 552 ~~~~~~~~l~~l~~L~~L~l~~~ 574 (791)
..+...+..+++|+.|++++|
T Consensus 304 --~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 304 --YDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp --HHHHHHHTTCTTCCEEEEEGG
T ss_pred --HHHHHHHhcCCCcCEEeCcCc
Confidence 123344566777777777766
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=159.12 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=37.7
Q ss_pred CcccEEeecCccccccccccc--cCcccccEEecCCCcccc-cc----hhhhcCCCCceeeccCcccccccchhHhhcCc
Q 038105 458 PCLTVLKMSDIRMLQQLPMGI--SKLVSLQLLDISNTEVEE-LP----EELKALVNLKCLNLDWTDVLVEVPQQLLSNFS 530 (791)
Q Consensus 458 ~~L~~L~l~~~~~~~~lp~~~--~~l~~L~~L~L~~~~l~~-lp----~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~ 530 (791)
++|++|++++|...+..|..+ +.+++|++|++++|.++. .+ ..+..+++|+.|++++|.+ ..++...++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCC
Confidence 345555555553333444444 445555555555554442 11 1223444555555555544 223222244555
Q ss_pred CCCeeeeeecCc
Q 038105 531 RLRVLRMFATGI 542 (791)
Q Consensus 531 ~L~~L~l~~~~~ 542 (791)
+|++|++++|.+
T Consensus 170 ~L~~L~Ls~N~l 181 (310)
T 4glp_A 170 ALTSLDLSDNPG 181 (310)
T ss_dssp TCCEEECCSCTT
T ss_pred CCCEEECCCCCC
Confidence 555555555543
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=5.6e-16 Score=166.70 Aligned_cols=168 Identities=18% Similarity=0.188 Sum_probs=81.9
Q ss_pred cCCCCccCccceeEEEcccCCCCCC-----C-CCCCCCCccEEEecCCCCccc---chhh-------hccCCcccEEeec
Q 038105 403 EAPADVRGWEMVRRLSLMRNSIDNL-----P-TVPTCPHLLTLFLNDNELTTI---TDDF-------FQSMPCLTVLKMS 466 (791)
Q Consensus 403 ~~~~~~~~~~~l~~l~l~~~~~~~l-----~-~~~~l~~L~~L~l~~~~~~~~---~~~~-------~~~l~~L~~L~l~ 466 (791)
.++..+..+++++.|++++|.+... + .+..+++|++|++++|.+..+ .+.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3434444455666666666655431 1 244556666666666543221 1111 2455666666666
Q ss_pred Cccccc----cccccccCcccccEEecCCCcccc-----cchhhhcC---------CCCceeeccCcccc-cccch--hH
Q 038105 467 DIRMLQ----QLPMGISKLVSLQLLDISNTEVEE-----LPEELKAL---------VNLKCLNLDWTDVL-VEVPQ--QL 525 (791)
Q Consensus 467 ~~~~~~----~lp~~~~~l~~L~~L~L~~~~l~~-----lp~~~~~l---------~~L~~L~l~~~~~~-~~~p~--~~ 525 (791)
+|.... .+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+. ..+|. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 663222 245555556666666666665541 22223333 56666666666543 22231 12
Q ss_pred hhcCcCCCeeeeeecCccccccccccchhchHH-HhcCCCCCcEEEEEeech
Q 038105 526 LSNFSRLRVLRMFATGIRSVYGRFSSWYENVAE-ELLGLKHLEVLEITFRSF 576 (791)
Q Consensus 526 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 576 (791)
+..+++|++|++++|.++... ...+.. .+..+++|+.|++++|.+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g------~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEG------IEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHH------HHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHhCCCcCEEECcCCCCCHhH------HHHHHHHHhhcCCCccEEECcCCCC
Confidence 445556666666666544210 001222 455556666666665555
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=157.74 Aligned_cols=130 Identities=18% Similarity=0.100 Sum_probs=54.4
Q ss_pred eeEEEcccCCCCCC-C-CC--CCCCCccEEEecCCCCcccch----hhhccCCcccEEeecCccccccccccccCccccc
Q 038105 414 VRRLSLMRNSIDNL-P-TV--PTCPHLLTLFLNDNELTTITD----DFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQ 485 (791)
Q Consensus 414 l~~l~l~~~~~~~l-~-~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 485 (791)
++.|++++|.+... + .+ ..+++|++|++++|.+....+ ..+..+++|++|++++|......|..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 44455554444322 1 11 344455555555554433211 1123444555555555432222233444455555
Q ss_pred EEecCCCcccc---cch--hhhcCCCCceeeccCcccccccch---hHhhcCcCCCeeeeeecCccc
Q 038105 486 LLDISNTEVEE---LPE--ELKALVNLKCLNLDWTDVLVEVPQ---QLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 486 ~L~L~~~~l~~---lp~--~~~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~~~ 544 (791)
+|++++|++.. ++. .++.+++|+.|++++|.+ +.++. .+++.+++|++|++++|.++.
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 55555554331 211 123444555555555543 22222 123444555555555554433
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=6.8e-16 Score=166.03 Aligned_cols=237 Identities=17% Similarity=0.226 Sum_probs=160.5
Q ss_pred CCCCCCccEEEecCCCCcccchh----hhccCCcccEEeecCcc---ccccccccc-------cCcccccEEecCCCccc
Q 038105 430 VPTCPHLLTLFLNDNELTTITDD----FFQSMPCLTVLKMSDIR---MLQQLPMGI-------SKLVSLQLLDISNTEVE 495 (791)
Q Consensus 430 ~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~---~~~~lp~~~-------~~l~~L~~L~L~~~~l~ 495 (791)
+..+++|++|++++|.+...... .+..+++|++|++++|. ....+|..+ ..+++|++|+|++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45678999999999998765433 36789999999999972 122345444 78899999999999988
Q ss_pred c-----cchhhhcCCCCceeeccCcccccccchhH---hhcC---------cCCCeeeeeecCccccccccccchhchHH
Q 038105 496 E-----LPEELKALVNLKCLNLDWTDVLVEVPQQL---LSNF---------SRLRVLRMFATGIRSVYGRFSSWYENVAE 558 (791)
Q Consensus 496 ~-----lp~~~~~l~~L~~L~l~~~~~~~~~p~~~---~~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 558 (791)
. +|..+..+++|++|++++|.+....+..+ +..+ ++|++|++++|.++.. ....+..
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------~~~~l~~ 181 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------SMKEWAK 181 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG------GHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH------HHHHHHH
Confidence 5 78889999999999999998743222221 3334 8999999999997631 1122346
Q ss_pred HhcCCCCCcEEEEEeechhhH--HHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCC----Ccee
Q 038105 559 ELLGLKHLEVLEITFRSFEAY--QTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWS----GGLK 632 (791)
Q Consensus 559 ~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~ 632 (791)
.+..+++|+.|++++|.+... ..+.. ..+..+++|++|+|++|.+. ..+|
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~------------------------~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLL------------------------EGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHH------------------------TTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHH------------------------HHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 788899999999999988632 11111 14566777888888877764 3233
Q ss_pred ecccccccccccccccCCCCEEEEecCCCcccc------cchhc--CCCCceEEEccCcchhH-----HhhcCCCCCCCC
Q 038105 633 IDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHL------TFLVF--APNLKSISVTHCDDMEE-----IISAGEFDDIPE 699 (791)
Q Consensus 633 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l------~~l~~--~~nL~~L~l~~c~~L~~-----l~~~~~~~~~~~ 699 (791)
..+. .+++|+.|.+++|. +... ..+.. +++|+.|+|++|. ++. ++.
T Consensus 238 ~~l~----------~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~--------- 296 (386)
T 2ca6_A 238 IALK----------SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT--------- 296 (386)
T ss_dssp HHGG----------GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH---------
T ss_pred HHHc----------cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH---------
Confidence 3332 35667777777764 3332 22322 6778888888775 332 222
Q ss_pred cccccCCcCcccceecccccc
Q 038105 700 MTGIISSPFAKLQHLELWGLK 720 (791)
Q Consensus 700 l~~~~~~~~~~L~~L~l~~~~ 720 (791)
.....+++|+.|.+.++.
T Consensus 297 ---~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 297 ---VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ---HHHHHCTTCCEEECTTSB
T ss_pred ---HHHhcCCCceEEEccCCc
Confidence 122346778888887754
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.2e-14 Score=153.80 Aligned_cols=237 Identities=16% Similarity=0.177 Sum_probs=154.9
Q ss_pred cEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEEecCCCccc-ccch-hhhcCCCCceee-c
Q 038105 437 LTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISNTEVE-ELPE-ELKALVNLKCLN-L 512 (791)
Q Consensus 437 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~-~lp~-~~~~l~~L~~L~-l 512 (791)
++++.+++.++.+|... .+++++|+|++| .++.+|. .|.++++|++|+|++|++. .+|. .+.++++|..+. +
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777777653 356788888888 5667775 4778888888888888764 4554 367777776544 4
Q ss_pred cCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCc
Q 038105 513 DWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCT 592 (791)
Q Consensus 513 ~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 592 (791)
++|++ ..+++..+..+++|++|++++|.+..... ..+....++..|++..+.
T Consensus 88 ~~N~l-~~l~~~~f~~l~~L~~L~l~~n~l~~~~~----------~~~~~~~~l~~l~l~~~~----------------- 139 (350)
T 4ay9_X 88 KANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPD----------VHKIHSLQKVLLDIQDNI----------------- 139 (350)
T ss_dssp EETTC-CEECTTSBCCCTTCCEEEEEEECCSSCCC----------CTTCCBSSCEEEEEESCT-----------------
T ss_pred cCCcc-cccCchhhhhccccccccccccccccCCc----------hhhcccchhhhhhhcccc-----------------
Confidence 44444 66665557788888888888887665322 122333455566654321
Q ss_pred ccceeecCCCCCcccccccccc-cccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCcccccc--hh
Q 038105 593 QAPFLYKFDREESIDVADLANL-EQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKHLTF--LV 669 (791)
Q Consensus 593 ~~l~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~l~~--l~ 669 (791)
....+....+..+ ..++.|++++|.+.. ++..... ..+|+.+.+.++..++.++. +.
T Consensus 140 ---------~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~----------~~~L~~l~l~~~n~l~~i~~~~f~ 199 (350)
T 4ay9_X 140 ---------NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFN----------GTQLDELNLSDNNNLEELPNDVFH 199 (350)
T ss_dssp ---------TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSST----------TEEEEEEECTTCTTCCCCCTTTTT
T ss_pred ---------ccccccccchhhcchhhhhhccccccccC-CChhhcc----------ccchhHHhhccCCcccCCCHHHhc
Confidence 1122222334444 358888998888764 5444332 34577777777767777764 56
Q ss_pred cCCCCceEEEccCcchhHHhhcCCCCCCCCcccccCCcCcccceecccccccccccccCCCCCCCccEEEEcC
Q 038105 670 FAPNLKSISVTHCDDMEEIISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKSIYWKPLPLPRLKELEVED 742 (791)
Q Consensus 670 ~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 742 (791)
.+++|+.|+++++. ++.+ ....|.+|++|.+.++.+++.++. ...+++|+.+.+.+
T Consensus 200 ~l~~L~~LdLs~N~-l~~l---------------p~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 200 GASGPVILDISRTR-IHSL---------------PSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TEECCSEEECTTSC-CCCC---------------CSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred cCcccchhhcCCCC-cCcc---------------ChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 77888888888873 3332 234578888888888888888874 45688888888754
No 104
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=1.9e-16 Score=181.21 Aligned_cols=206 Identities=18% Similarity=0.133 Sum_probs=103.4
Q ss_pred ccceeEEEcccCCCCCC--CCCC-CCCCccEEEecCCC-Cccc-chhhhccCCcccEEeecCcccccc----ccccccCc
Q 038105 411 WEMVRRLSLMRNSIDNL--PTVP-TCPHLLTLFLNDNE-LTTI-TDDFFQSMPCLTVLKMSDIRMLQQ----LPMGISKL 481 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l--~~~~-~l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l 481 (791)
+++++.|+++++.+... ..+. .+++|++|++++|. +... .+..+.++++|++|++++|..... ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45667777776654331 1121 45677777777663 3321 223344667777777776642221 22223355
Q ss_pred ccccEEecCCCc--cc--ccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchH
Q 038105 482 VSLQLLDISNTE--VE--ELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVA 557 (791)
Q Consensus 482 ~~L~~L~L~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 557 (791)
++|++|++++|. +. .++.-+..+++|+.|++++|...+.+|.. +..+++|++|++..+...- . ......++
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~-~---~~~~~~l~ 258 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEV-R---PDVYSGLS 258 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCC-C---HHHHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCcc-c---hhhHHHHH
Confidence 667777777664 22 22223345677777777766433444443 5667777777665443100 0 00112345
Q ss_pred HHhcCCCCCcEEE-EEeechhhHHHhhhcccccCCcccceeecCCCCCcccc-cccccccccceEEeccc
Q 038105 558 EELLGLKHLEVLE-ITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDV-ADLANLEQLNTLYFRSC 625 (791)
Q Consensus 558 ~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 625 (791)
..+.++++|+.|. +.......++.+ ......++.|++..+. ...... ..+.++++|++|++++|
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAYLPAV---YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGGGGGG---HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHhcCCCcccccCCcccchhhHHHH---HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 5667777777662 222222222111 1123455666666554 222111 12346677777777766
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=2.4e-14 Score=146.86 Aligned_cols=167 Identities=20% Similarity=0.347 Sum_probs=145.8
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+...+..+..+ ..+..+++++.|++++|.+..++.+..+++|++|++++|.+...+. +..+++|++|++++| .
T Consensus 48 L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~ 123 (291)
T 1h6t_A 48 IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHN-G 123 (291)
T ss_dssp CCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTS-C
T ss_pred ccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCC-c
Confidence 35677778888888 4588899999999999999998888999999999999999988654 889999999999999 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
+..++ .+..+++|++|++++|.++.+ ..++.+++|+.|++++|.+ ..++. +..+++|++|++++|.++.+
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~--l~~l~~L~~L~L~~N~i~~l----- 193 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHISDL----- 193 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred CCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh--hcCCCccCEEECCCCcCCCC-----
Confidence 66664 688999999999999999988 5789999999999999987 56665 78999999999999998763
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
+ .+..+++|+.|++++|.+..
T Consensus 194 ------~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 194 ------R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ------G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ------h-hhccCCCCCEEECcCCcccC
Confidence 2 37889999999999998754
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.5e-14 Score=139.30 Aligned_cols=149 Identities=19% Similarity=0.279 Sum_probs=129.4
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+...+..+..+| .+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++|..
T Consensus 46 L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 46 LTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred ccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 356778888888887 7889999999999999998888889999999999999999875555689999999999999966
Q ss_pred cccccccccCcccccEEecCCCc-ccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTE-VEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
....|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|.+ ..++. +..+++|++|++++|.+..
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~~--l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYRG--IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCTT--GGGCSSCCEEEECBC----
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChHH--hccCCCCCEEEeeCcccCC
Confidence 66678889999999999999998 88887 789999999999999987 66763 7899999999999998643
No 107
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.56 E-value=4.2e-15 Score=169.85 Aligned_cols=308 Identities=15% Similarity=0.143 Sum_probs=201.5
Q ss_pred cCccceeEEEcccCCCCCCC------CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccc---cccccccc
Q 038105 409 RGWEMVRRLSLMRNSIDNLP------TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRML---QQLPMGIS 479 (791)
Q Consensus 409 ~~~~~l~~l~l~~~~~~~l~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~lp~~~~ 479 (791)
..+++|+.|+++++.+..+. .+..+++|++|++++|.+..++ ..+..+++|++|+++.+... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 35678999999999887443 1356899999999999987765 55889999999999864232 23445678
Q ss_pred CcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHH
Q 038105 480 KLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEE 559 (791)
Q Consensus 480 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 559 (791)
.+++|+.|+++++....+|..+..+++|++|++++|.+.......++..+++|++|++.++ +.. ..++..
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~---------~~l~~~ 337 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGD---------RGLEVL 337 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH---------HHHHHH
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCH---------HHHHHH
Confidence 8889999999887666788888899999999999998544434344688999999999833 222 234555
Q ss_pred hcCCCCCcEEEEEe-----------echhhHHHhhhcccccCCcccceeecCCCCCccccccccc-ccccceEEeccc--
Q 038105 560 LLGLKHLEVLEITF-----------RSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLAN-LEQLNTLYFRSC-- 625 (791)
Q Consensus 560 l~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~-- 625 (791)
...+++|+.|+++. +.+.. ..+.........++.+.+ .+...+...+..+.. +++|++|+++++
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 56788999999993 34332 111221222345666776 333444333344444 788999999743
Q ss_pred --CCCCceeecccccccccccccccCCCCEEEEecCCC-ccc--ccch-hcCCCCceEEEccCcchhHHhhcCCCCCCCC
Q 038105 626 --GWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRN-LKH--LTFL-VFAPNLKSISVTHCDDMEEIISAGEFDDIPE 699 (791)
Q Consensus 626 --~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-L~~--l~~l-~~~~nL~~L~l~~c~~L~~l~~~~~~~~~~~ 699 (791)
.+.+ .|.. ..+..+...+++|+.|.++.|.+ +.. +..+ ..+++|+.|++++|. ++.....
T Consensus 416 ~n~l~~-~p~~----~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-------- 481 (592)
T 3ogk_B 416 EERITD-LPLD----NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLM-------- 481 (592)
T ss_dssp CSCCSS-CCCH----HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHH--------
T ss_pred CccccC-chHH----HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHH--------
Confidence 3332 1111 01112223578899999987764 222 2233 347889999998875 3322110
Q ss_pred cccccCCcCcccceecccccccccc--cccCCCCCCCccEEEEcCCCCCCC
Q 038105 700 MTGIISSPFAKLQHLELWGLKSLKS--IYWKPLPLPRLKELEVEDCHSLKK 748 (791)
Q Consensus 700 l~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~L~~ 748 (791)
.....+++|+.|++.+|. +.. +......+++|++|++++|+ ++.
T Consensus 482 ---~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 482 ---EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp ---HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred ---HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 123457889999999987 432 22223457889999999886 544
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2.6e-14 Score=141.11 Aligned_cols=146 Identities=25% Similarity=0.360 Sum_probs=83.4
Q ss_pred EEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccc
Q 038105 394 LVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRML 471 (791)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 471 (791)
+...+..+..+|..+. .++++|++++|.+..++ .+..+++|++|++++|.+..+++..|..+++|++|++++| .+
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l 100 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QL 100 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cC
Confidence 3444555555555443 55666666666665543 2455566666666666665555555556666666666666 34
Q ss_pred ccccc-cccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcc
Q 038105 472 QQLPM-GISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIR 543 (791)
Q Consensus 472 ~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 543 (791)
..+|. .+..+++|++|++++|+++.+|..+..+++|+.|++++|.+ ..+|...+..+++|++|++.+|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCcc
Confidence 44433 24556666666666666666666666666666666666654 4444444555666666666665543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-14 Score=146.45 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=137.2
Q ss_pred CCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccc
Q 038105 399 SGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI 478 (791)
Q Consensus 399 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~ 478 (791)
..+.+++ .+..+.+++.|++++|.+..++.+..+++|++|++++|.+..+++ +..+++|++|++++| .+..+|...
T Consensus 29 ~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~ 104 (263)
T 1xeu_A 29 QSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP 104 (263)
T ss_dssp SCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC
T ss_pred CCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCccc
Confidence 4455553 567788999999999999999988999999999999999998877 889999999999999 677777543
Q ss_pred cCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHH
Q 038105 479 SKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAE 558 (791)
Q Consensus 479 ~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 558 (791)
. ++|++|++++|.++.++ .++.+++|+.|++++|.+ +.++. ++.+++|++|++++|.++.. .
T Consensus 105 -~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~~------------~ 166 (263)
T 1xeu_A 105 -S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITNT------------G 166 (263)
T ss_dssp -C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCBC------------T
T ss_pred -c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcch------------H
Confidence 3 99999999999999886 589999999999999987 66764 78999999999999998763 4
Q ss_pred HhcCCCCCcEEEEEeechhh
Q 038105 559 ELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 559 ~l~~l~~L~~L~l~~~~~~~ 578 (791)
.+..+++|+.|++++|.+..
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEEC
T ss_pred HhccCCCCCEEeCCCCcccC
Confidence 57889999999999998764
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.3e-15 Score=171.47 Aligned_cols=187 Identities=21% Similarity=0.313 Sum_probs=150.2
Q ss_pred cceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCC
Q 038105 412 EMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISN 491 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~ 491 (791)
.++..+.+..+.+..+..+..+++|+.|++++|.+..++. +..+++|++|+|++| .+..+|. ++.+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 4455566666666666666778999999999999887763 789999999999999 5666665 89999999999999
Q ss_pred CcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEE
Q 038105 492 TEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEI 571 (791)
Q Consensus 492 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (791)
|.+..+| .+..+++|+.|+|++|.+ ..++. +..+++|+.|++++|.++.+ ..+..+++|+.|++
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~--l~~l~~L~~L~Ls~N~l~~l------------~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGI-SDING--LVHLPQLESLYLGNNKITDI------------TVLSRLTKLDTLSL 160 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCC-CCCGG--GGGCTTCSEEECCSSCCCCC------------GGGGSCTTCSEEEC
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCC-CCCcc--ccCCCccCEEECCCCccCCc------------hhhcccCCCCEEEC
Confidence 9999877 789999999999999987 56665 78999999999999997763 45788999999999
Q ss_pred EeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCceeecccccccccccccccCCC
Q 038105 572 TFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSL 651 (791)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 651 (791)
++|.+.... .+..+++|++|+|++|.+.+ + +.+.. +++|
T Consensus 161 s~N~l~~~~-----------------------------~l~~l~~L~~L~Ls~N~i~~-l-~~l~~----------l~~L 199 (605)
T 1m9s_A 161 EDNQISDIV-----------------------------PLAGLTKLQNLYLSKNHISD-L-RALAG----------LKNL 199 (605)
T ss_dssp CSSCCCCCG-----------------------------GGTTCTTCCEEECCSSCCCB-C-GGGTT----------CTTC
T ss_pred cCCcCCCch-----------------------------hhccCCCCCEEECcCCCCCC-C-hHHcc----------CCCC
Confidence 988775421 16778999999999998876 2 23333 5566
Q ss_pred CEEEEecC
Q 038105 652 DKITVSSC 659 (791)
Q Consensus 652 ~~L~l~~~ 659 (791)
+.|.+.++
T Consensus 200 ~~L~L~~N 207 (605)
T 1m9s_A 200 DVLELFSQ 207 (605)
T ss_dssp SEEECCSE
T ss_pred CEEEccCC
Confidence 66666665
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=7.8e-15 Score=163.22 Aligned_cols=193 Identities=17% Similarity=0.212 Sum_probs=140.8
Q ss_pred ccEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 391 EGFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
-..+...++.+..+|..+. ++++.|++++|.+..+| ..+++|++|++++|.++.++. +.. +|++|++++| .
T Consensus 61 L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N-~ 131 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN-Q 131 (571)
T ss_dssp CSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS-C
T ss_pred ccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC-c
Confidence 3456777777888877664 68888999988888888 567888999999888887665 443 8888899888 5
Q ss_pred cccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccc
Q 038105 471 LQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFS 550 (791)
Q Consensus 471 ~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 550 (791)
++.+|. .+++|++|++++|.++.+|. .+++|+.|++++|.+ +.+|. +. ++|++|++++|.++.++. ++
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L-~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~ 199 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL-TFLPE--LP--ESLEALDVSTNLLESLPA-VP 199 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC-SCCCC--CC--TTCCEEECCSSCCSSCCC-CC
T ss_pred CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC-CCcch--hh--CCCCEEECcCCCCCchhh-HH
Confidence 666776 67888899999888888876 578888999988887 55776 44 888889998888775432 11
Q ss_pred cchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCCc
Q 038105 551 SWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSGG 630 (791)
Q Consensus 551 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 630 (791)
. .-....+.|+.|++++|.+..+ +..+..+++|++|+|++|.+.+.
T Consensus 200 ~------~L~~~~~~L~~L~Ls~N~l~~l----------------------------p~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 200 V------RNHHSEETEIFFRCRENRITHI----------------------------PENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp --------------CCEEEECCSSCCCCC----------------------------CGGGGGSCTTEEEECCSSSCCHH
T ss_pred H------hhhcccccceEEecCCCcceec----------------------------CHHHhcCCCCCEEEeeCCcCCCc
Confidence 0 0011123348888888766532 23456688999999999999887
Q ss_pred eeeccccc
Q 038105 631 LKIDYKDM 638 (791)
Q Consensus 631 ~~~~~~~~ 638 (791)
+|..+..+
T Consensus 246 ~p~~l~~l 253 (571)
T 3cvr_A 246 IRESLSQQ 253 (571)
T ss_dssp HHHHHHHH
T ss_pred CHHHHHHh
Confidence 77766554
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.54 E-value=1.2e-14 Score=154.55 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=64.8
Q ss_pred CCccEEEecCCCCcccch----hhhccCC-cccEEeecCccccccccccccCc-----ccccEEecCCCcccccch-h--
Q 038105 434 PHLLTLFLNDNELTTITD----DFFQSMP-CLTVLKMSDIRMLQQLPMGISKL-----VSLQLLDISNTEVEELPE-E-- 500 (791)
Q Consensus 434 ~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~lp~~~~~l-----~~L~~L~L~~~~l~~lp~-~-- 500 (791)
++|++|++++|.+..... ..+..++ +|++|++++|......+..+..+ ++|++|++++|.++..+. .
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 335555555555555544 4445555 56666666553333333334433 556666666655553222 1
Q ss_pred --hhcC-CCCceeeccCcccccccchhHhh----c-CcCCCeeeeeecCccccccccccchhchHHHhcCCC-CCcEEEE
Q 038105 501 --LKAL-VNLKCLNLDWTDVLVEVPQQLLS----N-FSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK-HLEVLEI 571 (791)
Q Consensus 501 --~~~l-~~L~~L~l~~~~~~~~~p~~~~~----~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l 571 (791)
+..+ ++|+.|++++|.+ +..+...+. . .++|++|++++|.++... ...++..+..++ +|+.|++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~------~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS------SDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC------HHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH------HHHHHHHHhcCCccccEeee
Confidence 3333 5566666665554 222221121 1 245666666655544311 112344444443 5666665
Q ss_pred Eeechh
Q 038105 572 TFRSFE 577 (791)
Q Consensus 572 ~~~~~~ 577 (791)
++|.+.
T Consensus 175 s~n~l~ 180 (362)
T 3goz_A 175 RGNNLA 180 (362)
T ss_dssp TTSCGG
T ss_pred cCCCCc
Confidence 555543
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=2.4e-15 Score=151.80 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=143.1
Q ss_pred CccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEec
Q 038105 410 GWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDI 489 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L 489 (791)
.+.++..+++.++.+..++.+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|. ++.+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 45677788889999988887888999999999999988776 3789999999999999 6777776 999999999999
Q ss_pred CCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEE
Q 038105 490 SNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVL 569 (791)
Q Consensus 490 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 569 (791)
++|+++.+|.... ++|+.|++++|.+ +.++. ++.+++|++|++++|.++.+ + .+..+++|+.|
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~~--l~~l~~L~~L~Ls~N~i~~~-----------~-~l~~l~~L~~L 155 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTDS--LIHLKNLEILSIRNNKLKSI-----------V-MLGFLSKLEVL 155 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCC-SBSGG--GTTCTTCCEEECTTSCCCBC-----------G-GGGGCTTCCEE
T ss_pred CCCccCCcCcccc--CcccEEEccCCcc-CCChh--hcCcccccEEECCCCcCCCC-----------h-HHccCCCCCEE
Confidence 9999998875433 8999999999987 56664 78999999999999998763 2 57889999999
Q ss_pred EEEeechhhHHHhhhcccccCCcccceeecCCCCCcccccccccccccceEEecccCCCC
Q 038105 570 EITFRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
++++|.+... ..+..+++|++|++++|.+..
T Consensus 156 ~L~~N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 156 DLHGNEITNT-----------------------------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ECTTSCCCBC-----------------------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred ECCCCcCcch-----------------------------HHhccCCCCCEEeCCCCcccC
Confidence 9988877542 246678899999999998765
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=1.6e-14 Score=140.45 Aligned_cols=164 Identities=23% Similarity=0.365 Sum_probs=136.8
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. +++++|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .
T Consensus 11 ~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence 35566777888876664 689999999999998874 678999999999999999998888899999999999999 5
Q ss_pred cccccc-cccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
+..+|. .++.+++|++|++++|.++.+|.. +..+++|+.|++++|.+ ..++...+..+++|++|++++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCeec----
Confidence 656655 478999999999999999988765 78999999999999987 57777667899999999999997543
Q ss_pred cccchhchHHHhcCCCCCcEEEEEeechh
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
.+++|+.|+++.|.+.
T Consensus 163 -------------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 -------------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp -------------CTTTTHHHHHHHHHCT
T ss_pred -------------CCCCHHHHHHHHHhCC
Confidence 3556777766655544
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=2.4e-14 Score=140.22 Aligned_cols=152 Identities=16% Similarity=0.289 Sum_probs=94.6
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcc
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEV 494 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l 494 (791)
+.++.+++.+..+|... .++|+.|++++|.+..+++..|..+++|++|++++|......|..|..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34556666666655311 25667777777776666665566677777777777743333355667777777777777777
Q ss_pred cccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEe
Q 038105 495 EELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITF 573 (791)
Q Consensus 495 ~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 573 (791)
+.+|.. +..+++|+.|++++|.+ ..++...+..+++|++|++++|.++.+. +..+..+++|+.|++++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIA----------KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCS
T ss_pred CccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEEC----------HHHHhCCCCCCEEEeCC
Confidence 766654 46677777777777765 4443333666777777777777665532 23455666777777776
Q ss_pred echhh
Q 038105 574 RSFEA 578 (791)
Q Consensus 574 ~~~~~ 578 (791)
|++.+
T Consensus 162 N~~~c 166 (220)
T 2v9t_B 162 NPFIC 166 (220)
T ss_dssp SCEEC
T ss_pred CCcCC
Confidence 66543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=6.5e-14 Score=137.19 Aligned_cols=149 Identities=23% Similarity=0.384 Sum_probs=130.8
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIR 469 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 469 (791)
..+...+.++..+|..+. .+++.|++++|.+..++ .+..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 346777888999988776 78999999999999877 5788999999999999999998888999999999999999
Q ss_pred cccccccc-ccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 470 MLQQLPMG-ISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 470 ~~~~lp~~-~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
.+..+|.. +..+++|++|+|++|.++.+ |..+..+++|+.|++++|.+ ..++...+..+++|++|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 67777765 68899999999999999977 55699999999999999998 66766668899999999999998654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=3.2e-14 Score=151.12 Aligned_cols=174 Identities=21% Similarity=0.330 Sum_probs=144.4
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CC-CCCCccEEEecCCCCcccchhhhccCCcccEEeecCc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VP-TCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
..+...+..+..+|..+. ..++.|++++|.+..++. +. .+++|++|++++|.+..+++..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 356778888999988765 568999999999988763 44 8999999999999999999888999999999999999
Q ss_pred cccccccc-cccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHh---hcCcCCCeeeeeecCcc
Q 038105 469 RMLQQLPM-GISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLL---SNFSRLRVLRMFATGIR 543 (791)
Q Consensus 469 ~~~~~lp~-~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~---~~l~~L~~L~l~~~~~~ 543 (791)
.+..+|. .|..+++|++|+|++|.+..+ |..+..+++|+.|++++|.+ ..+|...+ ..+++|++|++++|.++
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-CSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC-CeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5666554 589999999999999999977 56799999999999999987 77887755 67999999999999987
Q ss_pred ccccccccchhchHHHhcCCCC--CcEEEEEeechhhH
Q 038105 544 SVYGRFSSWYENVAEELLGLKH--LEVLEITFRSFEAY 579 (791)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~ 579 (791)
.++ +..+..++. |+.|++++|++.+.
T Consensus 177 ~l~----------~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLP----------LTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCC----------HHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccC----------HHHhhhccHhhcceEEecCCCccCC
Confidence 642 345666665 47899999987643
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=137.15 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=94.2
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccc-hhhhccCCcccEEeecCcccccccc-ccccCcccccEEecCCC
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTIT-DDFFQSMPCLTVLKMSDIRMLQQLP-MGISKLVSLQLLDISNT 492 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~ 492 (791)
+.++++++.+..+|.. -...+++|++++|.+..++ ...|..+++|++|++++| .+..++ ..|+.+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 3566666666666531 1234567777777766663 344666777777777777 344443 35677777777777777
Q ss_pred cccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEE
Q 038105 493 EVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEI 571 (791)
Q Consensus 493 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 571 (791)
.++.++.. ++.+++|+.|++++|.+ ..+++..+.++++|++|++++|.++.+ .|..+..+++|+.|++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTV----------APGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCB----------CTTTTTTCTTCCEEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEE----------CHHHhcCCCCCCEEEe
Confidence 77765543 66777777777777766 334323356777777777777766553 2345666777777777
Q ss_pred Eeechhh
Q 038105 572 TFRSFEA 578 (791)
Q Consensus 572 ~~~~~~~ 578 (791)
++|.+.+
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 7776654
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.49 E-value=5.3e-13 Score=143.62 Aligned_cols=296 Identities=12% Similarity=0.072 Sum_probs=180.2
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~ 121 (791)
+..|+||+.+++++.+++.. ....+.+.|+|++|+||||+|+++++...... +.-..++|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 47899999999999999854 23567899999999999999999998762110 1123578889888888899999
Q ss_pred HHHHHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCcccc----cccccCCCCCCCC--CCCcEEEEEcCc
Q 038105 122 TIGKKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVDL----KKVGVPLPSRSNS--PKNSAVVFTTRF 193 (791)
Q Consensus 122 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~----~~~~~~l~~~~~~--~~~~~iivTtR~ 193 (791)
.++..++..... ......+....+.+.+. +++.+|||||++..... +.+...+...... ..+..+|.||+.
T Consensus 98 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999998764321 23335566667777663 46899999999765321 2221111110001 345678888875
Q ss_pred HHH--------HhhccccceEEeccCChHHHHHHHHHHhCc--cccCCCCChHHHHHHHHHHcC---CCchHH-HHHHHH
Q 038105 194 VDV--------CGRMEDRRMFKVACLSDEDAWELFREKVGE--ETIESHHSIPELAQTVAKECD---GLPLAL-ITIGRA 259 (791)
Q Consensus 194 ~~~--------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~~~~ 259 (791)
... ...+ ....+.+.+++.++..+++.+.+.. .....+ ++..+.+++.++ |.|..+ ..+..+
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 522 1111 1147899999999999999988643 111122 345677778887 999433 222222
Q ss_pred ---hh--cC--CCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhc-cCCCCcccChHhHHHHH
Q 038105 260 ---MA--YK--KTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCC-LYPEDYSIYKRDLIDCW 331 (791)
Q Consensus 260 ---l~--~~--~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~-~f~~~~~~~~~~l~~~w 331 (791)
.. .. -+.+.+..++..... ..+..++..+++ ..+..+..++ .+.....+....+.+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 11 11 256666666554422 124446677887 5565555555 33322244444333332
Q ss_pred HH--cCcccccccchhhhhHHHHHHHHHhcccccc
Q 038105 332 IC--EGFLDEAKFGTQNQGYHIVTTLVRACLLEEV 364 (791)
Q Consensus 332 ~~--~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 364 (791)
.. +.. .........+..+++.|...+++...
T Consensus 319 ~~~~~~~--~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 319 KELTSTL--GLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHT--TCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhc--CCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 11 100 01123446777889999999998773
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=5.9e-14 Score=137.50 Aligned_cols=150 Identities=16% Similarity=0.249 Sum_probs=127.5
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC---CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT---VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
..+..++..+..+|..+. ..++.|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 356778888999988765 467899999999988742 678999999999999999999888999999999999999
Q ss_pred cccccccccccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
......|..++.+++|++|+|++|.++.+ |..+..+++|+.|++++|.+ ..+++..+..+++|++|++++|.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCCcC
Confidence 44444444589999999999999999977 66799999999999999998 55544448999999999999998654
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=4e-14 Score=150.55 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=101.5
Q ss_pred EEEecCCCCcccchhhhccCCcccEEeecCcccccccc-----ccccCcc-cccEEecCCCccccc-chhhhcC-----C
Q 038105 438 TLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLP-----MGISKLV-SLQLLDISNTEVEEL-PEELKAL-----V 505 (791)
Q Consensus 438 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-----~~~~~l~-~L~~L~L~~~~l~~l-p~~~~~l-----~ 505 (791)
.+.+++|.+.+..+.++...++|++|++++|. ++..+ ..+..++ +|++|+|++|.++.. +..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35678888888888877777789999999994 55444 5677888 899999999999854 4455554 9
Q ss_pred CCceeeccCcccccccchhH---hhcC-cCCCeeeeeecCccccccccccchhchHHHhcCC-CCCcEEEEEeechhh
Q 038105 506 NLKCLNLDWTDVLVEVPQQL---LSNF-SRLRVLRMFATGIRSVYGRFSSWYENVAEELLGL-KHLEVLEITFRSFEA 578 (791)
Q Consensus 506 ~L~~L~l~~~~~~~~~p~~~---~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 578 (791)
+|+.|++++|.+....+..+ +..+ ++|++|++++|.++.... ..+...+..+ ++|++|++++|.+..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~------~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS------SEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH------HHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH------HHHHHHHHhCCCceeEEEccCCcCCH
Confidence 99999999999854444431 2334 899999999999876321 2344556664 699999999998863
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=4.3e-14 Score=150.12 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=126.3
Q ss_pred eeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhc-cCCcccEEeecCcccccccc-ccccCcccccEEecCC
Q 038105 414 VRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQ-SMPCLTVLKMSDIRMLQQLP-MGISKLVSLQLLDISN 491 (791)
Q Consensus 414 l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~ 491 (791)
.+.++.+++.+..+|.. -...++.|++++|.+..+++..|. .+++|++|++++| .+..++ ..|..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 35789999999988852 235689999999999999988787 9999999999999 555555 5699999999999999
Q ss_pred Ccccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEE
Q 038105 492 TEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 492 ~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
|+++.++. .+..+++|+.|++++|.+ ..+++..+.++++|++|++++|.++.++.. ....+..+++|+.|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~-------~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVE-------LIKDGNKLPKLMLLD 169 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCGG-------GTC----CTTCCEEE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCeeCHH-------HhcCcccCCcCCEEE
Confidence 99998866 489999999999999998 555544589999999999999998874331 111226789999999
Q ss_pred EEeechhhH
Q 038105 571 ITFRSFEAY 579 (791)
Q Consensus 571 l~~~~~~~~ 579 (791)
+++|.+..+
T Consensus 170 L~~N~l~~l 178 (361)
T 2xot_A 170 LSSNKLKKL 178 (361)
T ss_dssp CCSSCCCCC
T ss_pred CCCCCCCcc
Confidence 999987653
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=1.3e-13 Score=135.95 Aligned_cols=152 Identities=20% Similarity=0.303 Sum_probs=130.8
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEEecCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISN 491 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~ 491 (791)
..+.++.+++.+..+|.. -.++|++|++++|.+..+.+..|..+++|++|++++| .+..+|. .+..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 345688899999888852 2389999999999999998888999999999999999 5677764 478999999999999
Q ss_pred Ccccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEE
Q 038105 492 TEVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 492 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
|.++.+|.. +..+++|+.|++++|.+ ..+|.. +..+++|++|++++|.++.+. +..+..+++|+.|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSIP----------HGAFDRLSSLTHAY 165 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCC----------TTTTTTCTTCCEEE
T ss_pred CcCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCccC----------HHHHhCCCCCCEEE
Confidence 999988765 68999999999999997 688877 689999999999999987642 24578899999999
Q ss_pred EEeechhh
Q 038105 571 ITFRSFEA 578 (791)
Q Consensus 571 l~~~~~~~ 578 (791)
+++|++.+
T Consensus 166 l~~N~~~c 173 (229)
T 3e6j_A 166 LFGNPWDC 173 (229)
T ss_dssp CTTSCBCT
T ss_pred eeCCCccC
Confidence 99998754
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=2.6e-12 Score=137.99 Aligned_cols=294 Identities=14% Similarity=0.005 Sum_probs=179.1
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCC----CCC-CCEEEEEEeCCcc-CHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDN----PTD-FDYVIWVVVSKDL-QLEK 118 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~ 118 (791)
+..|+||+.+++++.+++.. ++..+.+.|+|++|+|||++|+++++..... ... ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 37799999999999988764 3356799999999999999999999875211 011 3467888887766 7888
Q ss_pred HHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccc--ccc-ccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 119 IQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDL--KKV-GVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 119 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~--~~~-~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
++..++..+.............+....+.+.+..++.+|||||++..... ... ...+... . .+..+|+||+...
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~--~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS--D-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS--S-SCEEEEEECSSTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC--C-cceEEEEEECCCc
Confidence 88888888722111112233456677777788776669999999764321 111 1112220 1 5678888988653
Q ss_pred HHhhc------cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcC---CCch-HHHHHHHHh--h-c
Q 038105 196 VCGRM------EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECD---GLPL-ALITIGRAM--A-Y 262 (791)
Q Consensus 196 ~~~~~------~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~-~ 262 (791)
..... .....+++.+++.++..+++.+++.... ....-.++..+.+++.++ |.|. ++..+..+. . .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGL-IKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTS-CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhc-ccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 21110 1123899999999999999998864210 011112456778888888 9887 433333322 2 1
Q ss_pred --CCCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCCCCcccChHhHHHHHHHcCccccc
Q 038105 263 --KKTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPEDYSIYKRDLIDCWICEGFLDEA 340 (791)
Q Consensus 263 --~~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~~~~~~~~~l~~~w~~~g~~~~~ 340 (791)
.-+.+.+..+++.... ..+..++..|++ ..+..+..++....+-.+. .... -+++.+ . .
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~--~~~~~~-g-~ 315 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYT--DLCNKF-K-Q 315 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHH--HHHHHT-T-C
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHH--HHHHHc-C-C
Confidence 2366777776654432 234456677777 5666666565511101111 0111 112111 0 1
Q ss_pred ccchhhhhHHHHHHHHHhcccccc
Q 038105 341 KFGTQNQGYHIVTTLVRACLLEEV 364 (791)
Q Consensus 341 ~~~~~~~~~~~l~~L~~~~ll~~~ 364 (791)
..........+++.|...+++...
T Consensus 316 ~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 123446677889999999999764
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=6.7e-13 Score=142.73 Aligned_cols=296 Identities=12% Similarity=0.098 Sum_probs=175.1
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
+..|+||+.+++++.+++.. .+..+.+.|+|++|+||||||+++++...........++|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 47799999999999999874 345679999999999999999999987621111023678888877777788888888
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCccc------ccccccCCCCCCCCCCCcEEEEEcCcHHH
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVD------LKKVGVPLPSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~~~~~iivTtR~~~~ 196 (791)
..++..... ......+..+.+.+.+. +++.+||||+++.... +..+...+... ...+..+|+||+....
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--NKSKISFIGITNDVKF 175 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--CC--EEEEEEESCGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--CCCeEEEEEEECCCCh
Confidence 877654321 22234555566666553 4589999999975421 22221112110 1235667778876543
Q ss_pred Hhhcc-------ccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcC---CCchHHHHHH-HHhh----
Q 038105 197 CGRME-------DRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECD---GLPLALITIG-RAMA---- 261 (791)
Q Consensus 197 ~~~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~-~~l~---- 261 (791)
..... ....+++++++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+. ....
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 22111 124799999999999999998764211 111223566777888887 9998433332 2211
Q ss_pred -c--CCCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCCC-C-cccChHhHHHHHH--Hc
Q 038105 262 -Y--KKTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYPE-D-YSIYKRDLIDCWI--CE 334 (791)
Q Consensus 262 -~--~~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~~-~-~~~~~~~l~~~w~--~~ 334 (791)
. .-+.+....++..... ..+...+..+++ ..+..+..++...+ + ..+....+.+.+. ++
T Consensus 255 ~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIER-------------DRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHHH-------------HHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 1255555555543321 234455667776 55666655553211 1 1233333322211 11
Q ss_pred CcccccccchhhhhHHHHHHHHHhccccc
Q 038105 335 GFLDEAKFGTQNQGYHIVTTLVRACLLEE 363 (791)
Q Consensus 335 g~~~~~~~~~~~~~~~~l~~L~~~~ll~~ 363 (791)
.. . ...-.......+++.|...+++..
T Consensus 321 ~~-g-~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 321 KL-G-VEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HH-T-CCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred hc-C-CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 00 0 011223566778999999999865
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1.7e-13 Score=152.39 Aligned_cols=180 Identities=22% Similarity=0.271 Sum_probs=134.1
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
+++.|++++|.+..+|... +++|++|++++|.+..++ ..+++|++|++++| .++.+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCC
Confidence 7899999999999888522 488999999999998776 35789999999999 6666887 665 8999999999
Q ss_pred cccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEE
Q 038105 493 EVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEIT 572 (791)
Q Consensus 493 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 572 (791)
.++.+|. .+++|+.|++++|.+ +.+|. .+++|++|++++|.++.+ |. +. ++|+.|+++
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~L~~l-----------p~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQL-TMLPE----LPTSLEVLSVRNNQLTFL-----------PE-LP--ESLEALDVS 188 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCC-----------CC-CC--TTCCEEECC
T ss_pred cCCCCCC---cCccccEEeCCCCcc-CcCCC----cCCCcCEEECCCCCCCCc-----------ch-hh--CCCCEEECc
Confidence 9999887 789999999999987 56875 578999999999987763 22 33 789999999
Q ss_pred eechhhHHHhhhcccccCCcccceeecCCCCCcccccc-cccccccceEEecccCCCCceeecccccccccccccccCCC
Q 038105 573 FRSFEAYQTFLSSQKLRSCTQAPFLYKFDREESIDVAD-LANLEQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSL 651 (791)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 651 (791)
+|.+..++. + ... ....+.|++|+|++|.+.. +|..+.. +++|
T Consensus 189 ~N~L~~lp~-~------------------------~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~----------l~~L 232 (571)
T 3cvr_A 189 TNLLESLPA-V------------------------PVRNHHSEETEIFFRCRENRITH-IPENILS----------LDPT 232 (571)
T ss_dssp SSCCSSCCC-C------------------------C--------CCEEEECCSSCCCC-CCGGGGG----------SCTT
T ss_pred CCCCCchhh-H------------------------HHhhhcccccceEEecCCCccee-cCHHHhc----------CCCC
Confidence 887764321 0 000 1122345899999988775 6655543 3445
Q ss_pred CEEEEecC
Q 038105 652 DKITVSSC 659 (791)
Q Consensus 652 ~~L~l~~~ 659 (791)
+.|+++++
T Consensus 233 ~~L~L~~N 240 (571)
T 3cvr_A 233 CTIILEDN 240 (571)
T ss_dssp EEEECCSS
T ss_pred CEEEeeCC
Confidence 55555544
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=3e-12 Score=137.75 Aligned_cols=298 Identities=14% Similarity=0.083 Sum_probs=180.4
Q ss_pred CCcccchHHHHHHHHHHhcc---CCCce--EEEEEcCCCCcHHHHHHHHHhcccCCCCC-CCEEEEEEeCCccCHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---EPAAG--IIGLYGMGGVGKTTLLTQINNKFVDNPTD-FDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---~~~~~--vv~i~G~gGiGKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 121 (791)
++.++||+.+++++.+++.. +.... .+.|+|+.|+||||+|+.++... ... -..++|+++....+...+..
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY---KDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH---TTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH---hhhcCeeEEEEeCccCCCHHHHHH
Confidence 36799999999999999875 22334 89999999999999999999887 222 23578888888888889999
Q ss_pred HHHHHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCc--ccccccccCCCCCCC-CCCCcEEEEEcCcHHH
Q 038105 122 TIGKKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWER--VDLKKVGVPLPSRSN-SPKNSAVVFTTRFVDV 196 (791)
Q Consensus 122 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~-~~~~~~iivTtR~~~~ 196 (791)
.++..++..... ......+..+.+.+.+. +++.+||||+++.. .....+...+..... ...+..+|++|++...
T Consensus 93 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 93 EIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 999888754321 22234555555555553 56899999999765 223333233322000 0136678888876543
Q ss_pred Hhhcc-------ccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHc---------CCCchHHHHHHHHh
Q 038105 197 CGRME-------DRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKEC---------DGLPLALITIGRAM 260 (791)
Q Consensus 197 ~~~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l 260 (791)
..... ....+.+.+++.++..+++...+.... ....-.++..+.+++.+ +|.|..+..+....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 22221 123699999999999999988865311 11122356788899999 79875544433221
Q ss_pred h------cC--CCHHHHHHHHHHHhhhccccCCCchhhhhhhhhcccCCCChhhhHHHhhhccCC---CCcccChHhHHH
Q 038105 261 A------YK--KTPEEWRYAIEVLRRSASEFEGLGKEVYPLLKFSYDCLPNDAIRSCFLYCCLYP---EDYSIYKRDLID 329 (791)
Q Consensus 261 ~------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~k~~~~~~~~f~---~~~~~~~~~l~~ 329 (791)
. .. -+.+....+..... ...+...+..|+. ..+.++..++.+. .+..+....+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 1 11 13333333332211 1223334566776 6666666666543 222344455544
Q ss_pred HHHHcCcccccccchhhhhHHHHHHHHHhcccccc
Q 038105 330 CWICEGFLDEAKFGTQNQGYHIVTTLVRACLLEEV 364 (791)
Q Consensus 330 ~w~~~g~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 364 (791)
.+....-......-.......+++.|...+++...
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 317 SYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 43321000000112345677889999999999774
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=3.3e-13 Score=126.23 Aligned_cols=131 Identities=24% Similarity=0.305 Sum_probs=94.3
Q ss_pred cceeEEEcccCCCC--CCCCC-CCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEe
Q 038105 412 EMVRRLSLMRNSID--NLPTV-PTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLD 488 (791)
Q Consensus 412 ~~l~~l~l~~~~~~--~l~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~ 488 (791)
++++.|++++|.+. .+|.. ..+++|++|++++|.+... ..+..+++|++|++++|.....+|..++.+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56778888888776 56643 6777888888888877666 3467788888888888743333666666678888888
Q ss_pred cCCCcccccc--hhhhcCCCCceeeccCcccccccch---hHhhcCcCCCeeeeeecCcccc
Q 038105 489 ISNTEVEELP--EELKALVNLKCLNLDWTDVLVEVPQ---QLLSNFSRLRVLRMFATGIRSV 545 (791)
Q Consensus 489 L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~~~~~~~~ 545 (791)
+++|.++.+| ..+..+++|+.|++++|.+ ..+|. ..+..+++|++|++.+|.+...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 8888777765 5677788888888888876 45554 3467788888888887776553
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=3.8e-13 Score=126.73 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=66.4
Q ss_pred CccceeEEEcccCCCCCCCCCCCCC-CccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccc-cCcccccEE
Q 038105 410 GWEMVRRLSLMRNSIDNLPTVPTCP-HLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGI-SKLVSLQLL 487 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~-~~l~~L~~L 487 (791)
++.+++.|++++|.+..++.+..+. +|++|++++|.+..+ ..+..+++|++|++++| .+..+|..+ +.+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEE
Confidence 3455666666666655555443333 555555555555544 22455555555555555 344444332 555555555
Q ss_pred ecCCCcccccch--hhhcCCCCceeeccCcccccccchh---HhhcCcCCCeeeeeecC
Q 038105 488 DISNTEVEELPE--ELKALVNLKCLNLDWTDVLVEVPQQ---LLSNFSRLRVLRMFATG 541 (791)
Q Consensus 488 ~L~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~---~~~~l~~L~~L~l~~~~ 541 (791)
++++|.++.+|. .++.+++|+.|++++|.+ ..+|.. +++.+++|++|++++|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 555555555554 455555555555555554 344432 24455555555555544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=7.6e-13 Score=120.91 Aligned_cols=125 Identities=26% Similarity=0.273 Sum_probs=89.5
Q ss_pred ccceeEEEcccCCCC--CCCC-CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 411 WEMVRRLSLMRNSID--NLPT-VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~--~l~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
.++++.|++++|.+. .+|. +..+++|++|++++|.+... ..+..+++|++|++++|.....+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367788888888877 5653 46778888888888877666 346777888888888874333366666677888888
Q ss_pred ecCCCcccccc--hhhhcCCCCceeeccCcccccccch---hHhhcCcCCCeeeee
Q 038105 488 DISNTEVEELP--EELKALVNLKCLNLDWTDVLVEVPQ---QLLSNFSRLRVLRMF 538 (791)
Q Consensus 488 ~L~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l~ 538 (791)
++++|.++.+| ..++.+++|+.|++++|.+ ..+|. ..++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 88888777654 5677788888888888776 44544 346777777777764
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=9.4e-14 Score=160.61 Aligned_cols=116 Identities=22% Similarity=0.331 Sum_probs=79.7
Q ss_pred cchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhc
Q 038105 449 ITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSN 528 (791)
Q Consensus 449 ~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~ 528 (791)
.++..|..++.|++|+|++| .+..+|..+..+++|++|+|++|.++.+|..++++++|+.|+|++|.+ ..+|.. +++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAE-LGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSS-GGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChh-hcC
Confidence 33455677777777777777 455777777777777777777777777777777777777777777776 467765 577
Q ss_pred CcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 529 FSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 529 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
|++|++|++++|.++. +|..|+.+++|+.|++++|.+.+
T Consensus 292 l~~L~~L~L~~N~l~~-----------lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT-----------LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSCCCC-----------CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCCCCc-----------cChhhhcCCCccEEeCCCCccCC
Confidence 7777777777777654 44456777777777777777653
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=3.1e-12 Score=119.53 Aligned_cols=132 Identities=25% Similarity=0.271 Sum_probs=116.6
Q ss_pred cccEEEEcCCCcc--cCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 390 KEGFLVYAGSGLT--EAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 390 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
.-..+...+..+. .+|..+..+++|+.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 104 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC
Confidence 3456778888887 88888889999999999999999888889999999999999999886677678899999999999
Q ss_pred cccccccc--ccccCcccccEEecCCCcccccch----hhhcCCCCceeeccCcccccccch
Q 038105 468 IRMLQQLP--MGISKLVSLQLLDISNTEVEELPE----ELKALVNLKCLNLDWTDVLVEVPQ 523 (791)
Q Consensus 468 ~~~~~~lp--~~~~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~l~~~~~~~~~p~ 523 (791)
| .+..+| ..++.+++|++|++++|.++.+|. .+..+++|+.|++++|.. .++|.
T Consensus 105 N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 105 N-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp S-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred C-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 9 677665 679999999999999999998886 789999999999999986 66665
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.35 E-value=1.1e-11 Score=124.10 Aligned_cols=198 Identities=15% Similarity=0.136 Sum_probs=118.6
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++||+.+++.+.+++......+.+.|+|++|+||||+|+++++...... .+. ...+... ... ..+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~---~~~~~~~---~~~-~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT---ATPCGVC---DNC-REIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSC---SSCCSCS---HHH-HHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCC---CCCCccc---HHH-HHHhccCC
Confidence 468999999999999998764456899999999999999999988762111 100 0000000 000 01110000
Q ss_pred CCCC--CcccccHHHHHHHHHHHh-----CCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcHHHHh-
Q 038105 129 LYTD--SWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCG- 198 (791)
Q Consensus 129 ~~~~--~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~- 198 (791)
...- ........+....+.+.+ .+++.+||+||++.. ..++.+...+.. ...+.++|+||+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~---~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc---CCCceEEEEEeCChHhCCH
Confidence 0000 000001112222333332 346799999999764 233444333433 345678888887543211
Q ss_pred -hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 199 -RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 199 -~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
.......+++.+++.++..+++.+.+....... .++..+.+++.++|+|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112245799999999999999998875433211 25678899999999999887776543
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=5.8e-13 Score=125.49 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=114.8
Q ss_pred CCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhh-hcC
Q 038105 426 NLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEEL-KAL 504 (791)
Q Consensus 426 ~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~-~~l 504 (791)
..+.+..+.+|++|++++|.+..++ .+....++|++|++++| .+..+ ..++.+++|++|++++|.++.+|..+ +.+
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp TSCEEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HHHhcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 3445567899999999999998774 33333449999999999 56666 57999999999999999999988664 999
Q ss_pred CCCceeeccCcccccccch-hHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 505 VNLKCLNLDWTDVLVEVPQ-QLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 505 ~~L~~L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
++|+.|++++|.+ +.+|. ..+..+++|++|++++|.++..+. .....+..+++|+.|+++.|....
T Consensus 88 ~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~-------~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 88 PDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKH-------YRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTT-------HHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHh-------HHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999987 77775 237899999999999999765321 112347889999999999998754
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=5.8e-13 Score=154.00 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=85.8
Q ss_pred CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCce
Q 038105 430 VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKC 509 (791)
Q Consensus 430 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 509 (791)
+..+.+|++|++++|.+..++.. +..+++|++|+|++| .+..+|..|+.|++|++|+|++|.|+.+|..++.|++|+.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 56677888888888887776666 347888888888888 5557887788888888888888888888888888888888
Q ss_pred eeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 510 LNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 510 L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
|+|++|.+ +.+|.. ++++++|++|++++|.+++
T Consensus 298 L~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDNMV-TTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSSCC-CCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EECCCCCC-CccChh-hhcCCCccEEeCCCCccCC
Confidence 88888876 677776 6788888888888887665
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=8.3e-12 Score=119.24 Aligned_cols=128 Identities=22% Similarity=0.358 Sum_probs=94.4
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchh-hhccCCcccEEeecCccccccccccccCcccccEEecCCCc
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDD-FFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE 493 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 493 (791)
+.++++++.+..+|.. -..++++|++++|.+..+++. .|..+++|++|++++|......|..++.+++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 5678888888777742 123788888888888777653 47788888888888884444446778888888888888888
Q ss_pred ccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 494 VEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 494 l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
++.++.. ++.+++|+.|++++|.+.+..|.. +..+++|++|++++|.+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence 8866544 778888888888888874444543 6788888888888887554
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=1.2e-11 Score=112.85 Aligned_cols=124 Identities=25% Similarity=0.259 Sum_probs=109.2
Q ss_pred cccEEEEcCCCcc--cCCCCccCccceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecC
Q 038105 390 KEGFLVYAGSGLT--EAPADVRGWEMVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSD 467 (791)
Q Consensus 390 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 467 (791)
.-..+...+..+. .+|..+..+++++.|++++|.+..++.+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 3456778888887 88888889999999999999999988889999999999999999886677788899999999999
Q ss_pred cccccccc--ccccCcccccEEecCCCcccccch----hhhcCCCCceeeccC
Q 038105 468 IRMLQQLP--MGISKLVSLQLLDISNTEVEELPE----ELKALVNLKCLNLDW 514 (791)
Q Consensus 468 ~~~~~~lp--~~~~~l~~L~~L~L~~~~l~~lp~----~~~~l~~L~~L~l~~ 514 (791)
| .+..+| ..++.+++|++|++++|.++.+|. .++.+++|+.|++++
T Consensus 98 N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 98 N-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp S-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred C-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9 566654 789999999999999999998875 689999999999863
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=1.7e-11 Score=115.55 Aligned_cols=128 Identities=23% Similarity=0.388 Sum_probs=98.5
Q ss_pred eeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc-ccCcccccEEecCCC
Q 038105 414 VRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492 (791)
Q Consensus 414 l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~ 492 (791)
.+.++++++.+..+|. ...++|++|++++|.+..+++..|..+++|++|++++| .+..+|.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 3567777777777763 23468888888888888877777788888888888888 55555543 678888888888888
Q ss_pred cccccchh-hhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 493 EVEELPEE-LKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 493 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
.++.+|.. +..+++|+.|++++|.+ ..+|...+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCeec
Confidence 88877665 67888888888888877 56776656778888888888887654
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.3e-11 Score=117.79 Aligned_cols=129 Identities=22% Similarity=0.325 Sum_probs=111.4
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC---CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT---VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
..+..++.++..+|..+.. +++.|++++|.+..++. +..+++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4567788899999887753 89999999999998774 678999999999999999998888999999999999999
Q ss_pred cccccccccccCcccccEEecCCCccccc-chhhhcCCCCceeeccCcccccccc
Q 038105 469 RMLQQLPMGISKLVSLQLLDISNTEVEEL-PEELKALVNLKCLNLDWTDVLVEVP 522 (791)
Q Consensus 469 ~~~~~lp~~~~~l~~L~~L~L~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p 522 (791)
......|..+..+++|++|++++|+++.+ |..+..+++|+.|++++|.+....+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 54444455589999999999999999965 6779999999999999999865554
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=3.5e-11 Score=118.35 Aligned_cols=185 Identities=12% Similarity=0.066 Sum_probs=116.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++||+..++++.+++... ..+.+.|+|++|+|||++|+++++.+.. .......+.++.+...+...+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 56899999999999999876 4445999999999999999999887521 111112344444433333322222211111
Q ss_pred CCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHHHh--hccccc
Q 038105 129 LYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDVCG--RMEDRR 204 (791)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~~--~~~~~~ 204 (791)
.. .....++.+||+||++... ..+.+...+.. ...+.++|+||+...... ......
T Consensus 95 ~~-----------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~---~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 95 TA-----------------PIGGAPFKIIFLDEADALTADAQAALRRTMEM---YSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp SC-----------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred cc-----------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHh---cCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 00 0013568999999997652 23333333332 344678888887543211 112234
Q ss_pred eEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHH
Q 038105 205 MFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGR 258 (791)
Q Consensus 205 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 258 (791)
.+++.+++.++..+++.+.+...+... .++..+.+++.++|+|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 799999999999999998875433221 256778899999999986554443
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=116.59 Aligned_cols=125 Identities=21% Similarity=0.315 Sum_probs=89.9
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccc-ccccCcccccEEecCCCc
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLP-MGISKLVSLQLLDISNTE 493 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~ 493 (791)
+.++++++.+..+|.. -.++|++|++++|.+..++ ..|..+++|++|++++| .+..++ ..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 4577777777777642 2357888888888877666 34777888888888888 444443 457788888888888888
Q ss_pred ccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCcc
Q 038105 494 VEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIR 543 (791)
Q Consensus 494 l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~ 543 (791)
++.++. .+..+++|+.|++++|.+ ..+|...+..+++|++|++.+|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCee
Confidence 876654 477788888888888876 5666655677788888888777654
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.9e-11 Score=116.63 Aligned_cols=125 Identities=25% Similarity=0.380 Sum_probs=110.1
Q ss_pred cEEEEcCCCcccCCCCccCccceeEEEcccCCCCCCC-CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 392 GFLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLP-TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
..+...+.++..+|..+. .+++.|++++|.+..+| .+..+++|++|++++|.+..+++..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 356778888999987765 68999999999999887 57889999999999999999998889999999999999994
Q ss_pred ccccc-ccccCcccccEEecCCCcccccchh-hhcCCCCceeeccCccccc
Q 038105 471 LQQLP-MGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLV 519 (791)
Q Consensus 471 ~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~ 519 (791)
+..+| ..|..+++|++|+|++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 55554 5699999999999999999998875 8899999999999998743
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=7.2e-13 Score=127.53 Aligned_cols=129 Identities=15% Similarity=0.215 Sum_probs=100.6
Q ss_pred ccEEEecCC--CCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeecc
Q 038105 436 LLTLFLNDN--ELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLD 513 (791)
Q Consensus 436 L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~ 513 (791)
++...+.++ .+..++. .+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 344444433 2333433 4788999999999998 566688 8888999999999999999898888888999999999
Q ss_pred CcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhH
Q 038105 514 WTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAY 579 (791)
Q Consensus 514 ~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 579 (791)
+|.+ ..+|. ++.+++|++|++++|.++.+ ..+..+..+++|+.|++++|.+.+.
T Consensus 102 ~N~l-~~l~~--~~~l~~L~~L~l~~N~i~~~---------~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 102 YNQI-ASLSG--IEKLVNLRVLYMSNNKITNW---------GEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEC-CCHHH--HHHHHHSSEEEESEEECCCH---------HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCcC-CcCCc--cccCCCCCEEECCCCcCCch---------hHHHHHhcCCCCCEEEecCCccccc
Confidence 9987 56764 78899999999999987652 1224788899999999999987654
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.21 E-value=6.8e-11 Score=111.35 Aligned_cols=127 Identities=25% Similarity=0.412 Sum_probs=109.3
Q ss_pred EEEEcCCCcccCCCCccCccceeEEEcccCCCCCCCC--CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc
Q 038105 393 FLVYAGSGLTEAPADVRGWEMVRRLSLMRNSIDNLPT--VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM 470 (791)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~l~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 470 (791)
.+...+.++..+|..+. ++++.|++++|.+..++. +..+++|++|++++|.+..+++..|..+++|++|++++| .
T Consensus 11 ~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-K 87 (177)
T ss_dssp EEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-C
Confidence 45667778888886554 799999999999998874 678999999999999999999888899999999999999 5
Q ss_pred cccccc-cccCcccccEEecCCCcccccchh-hhcCCCCceeeccCcccccccc
Q 038105 471 LQQLPM-GISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTDVLVEVP 522 (791)
Q Consensus 471 ~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p 522 (791)
++.+|. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+....|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 666665 478999999999999999988876 5889999999999999865554
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=3.5e-11 Score=134.69 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=64.4
Q ss_pred CccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCceeeccC
Q 038105 435 HLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKCLNLDW 514 (791)
Q Consensus 435 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~ 514 (791)
.|++|++++|.++.++. ++.+++|++|++++| .+..+|..++.+++|++|+|++|.++.+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 35666666666665543 566666666666666 44466666666666666666666666666 566666666666666
Q ss_pred ccccccc-chhHhhcCcCCCeeeeeecCccc
Q 038105 515 TDVLVEV-PQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 515 ~~~~~~~-p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
|.+.+.. |.. ++++++|++|++++|.+++
T Consensus 518 N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 6653222 443 5666666666666666554
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=6.6e-11 Score=132.45 Aligned_cols=121 Identities=23% Similarity=0.286 Sum_probs=106.0
Q ss_pred ceeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCC
Q 038105 413 MVRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNT 492 (791)
Q Consensus 413 ~l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~ 492 (791)
.++.|++++|.+..+|.+..+++|++|++++|.+..+|. .++.+++|++|++++| .++.+| .++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccch-hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 588999999999999999999999999999999997766 4899999999999999 677788 8999999999999999
Q ss_pred ccccc--chhhhcCCCCceeeccCcccccccch---hHhhcCcCCCeeee
Q 038105 493 EVEEL--PEELKALVNLKCLNLDWTDVLVEVPQ---QLLSNFSRLRVLRM 537 (791)
Q Consensus 493 ~l~~l--p~~~~~l~~L~~L~l~~~~~~~~~p~---~~~~~l~~L~~L~l 537 (791)
.++.+ |..++.+++|+.|++++|.+. .+|+ .++..+++|+.|++
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG-GSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCC-CCccHHHHHHHHCcccCccCC
Confidence 99987 899999999999999999984 4443 22455888888864
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=1.2e-12 Score=126.04 Aligned_cols=141 Identities=19% Similarity=0.220 Sum_probs=89.8
Q ss_pred CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchhhhcCCCCce
Q 038105 430 VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEELKALVNLKC 509 (791)
Q Consensus 430 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~ 509 (791)
+..+++|++|++++|.+..++ .+..+++|++|++++| .+..+|..++.+++|++|++++|.++.+| .++.+++|+.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 455677777777777776655 3667777777777777 55567766666777777777777777766 5777777777
Q ss_pred eeccCcccccccch-hHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechh
Q 038105 510 LNLDWTDVLVEVPQ-QLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 510 L~l~~~~~~~~~p~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
|++++|.+ ..++. ..+..+++|++|++++|.+.................+..+++|+.|+ ++.+.
T Consensus 120 L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 77777766 44443 23677777777877777654421100000011123366777777776 45443
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=3.6e-10 Score=117.96 Aligned_cols=181 Identities=14% Similarity=0.185 Sum_probs=114.0
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++||+..++.+.+++..+ ..+.+.|+|++|+|||++|+.+++.+. ...+ ..+++++.+...+...+.. +.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~~-~~--- 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVVRN-QI--- 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHHHT-HH---
T ss_pred HHHHCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHHHH-HH---
Confidence 56899999999999999876 333499999999999999999998752 1111 1244444433222222111 11
Q ss_pred CCCCCCcccccHHHHHHHHHH---Hh-CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHH-Hh-h
Q 038105 128 GLYTDSWKDKRLEEKAQDIFK---TL-SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDV-CG-R 199 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~---~l-~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~-~~-~ 199 (791)
+.+.. .+ .+++.++|+||++... ..+.+...+.. ...++++|+||+.... .. .
T Consensus 94 ----------------~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~---~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 94 ----------------KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL---YSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp ----------------HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH---TTTTEEEEEEESCGGGSCHHH
T ss_pred ----------------HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc---cCCCceEEEEeCChhhchhHH
Confidence 11110 11 3458999999997642 23333333333 3456778888765432 11 1
Q ss_pred ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH-HHHHHH
Q 038105 200 MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA-LITIGR 258 (791)
Q Consensus 200 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~~ 258 (791)
......+++.+++.++..+++.+.+...+... .++.++.+++.++|.|.. +..+..
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12334899999999999999998775433221 256788999999999954 444443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=8.6e-10 Score=103.09 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=58.1
Q ss_pred eEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc-ccCcccccEEecCCCc
Q 038105 415 RRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNTE 493 (791)
Q Consensus 415 ~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~~ 493 (791)
+.++++++.+..+|.-. .++|++|++++|.+..+++..|.++++|++|+|++| .+..+|.. +..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 45666666666655311 256666666666666665555566666666666666 44444443 3556666666666666
Q ss_pred ccccchh-hhcCCCCceeeccCccc
Q 038105 494 VEELPEE-LKALVNLKCLNLDWTDV 517 (791)
Q Consensus 494 l~~lp~~-~~~l~~L~~L~l~~~~~ 517 (791)
++.+|.. +..+++|+.|++++|.+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 6655544 55556666666665554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=1.2e-09 Score=101.71 Aligned_cols=102 Identities=24% Similarity=0.352 Sum_probs=60.9
Q ss_pred eeEEEcccCCCCCCCCCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccccc-ccCcccccEEecCCC
Q 038105 414 VRRLSLMRNSIDNLPTVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMG-ISKLVSLQLLDISNT 492 (791)
Q Consensus 414 l~~l~l~~~~~~~l~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-~~~l~~L~~L~L~~~ 492 (791)
.+.++++++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .+..+|.. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 345666666666665321 256666666666666665555666666666666666 34444443 456666666666666
Q ss_pred cccccchh-hhcCCCCceeeccCccc
Q 038105 493 EVEELPEE-LKALVNLKCLNLDWTDV 517 (791)
Q Consensus 493 ~l~~lp~~-~~~l~~L~~L~l~~~~~ 517 (791)
+++.+|.. +..+++|+.|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 66655543 55666666666666654
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=8.6e-10 Score=103.11 Aligned_cols=105 Identities=15% Similarity=0.233 Sum_probs=81.9
Q ss_pred ccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccccchh-hhcCCCCceeeccC
Q 038105 436 LLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLDW 514 (791)
Q Consensus 436 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~ 514 (791)
-+.++++++.+..++... .++|++|++++|......|..++.+++|++|+|++|+++.+|.. +..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367888888887777653 27888889988843333366788888899999999888888766 57888899999988
Q ss_pred cccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 515 TDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 515 ~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
|.+ ..+|...+..+++|++|++++|.+..
T Consensus 91 N~l-~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHL-KSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCC-CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred Ccc-ceeCHHHhccccCCCEEEeCCCCccc
Confidence 887 66776657888888888888887654
No 152
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.8e-09 Score=109.60 Aligned_cols=173 Identities=8% Similarity=0.018 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC----CCEEEEEEeCCccCHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD----FDYVIWVVVSKDLQLEKIQE 121 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~ 121 (791)
..+.|||+|++++...|.. ++..+.+.|+|+.|+|||++++.+++.+...... .-.++++++....+...++.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 3489999999999988765 3477899999999999999999999987322211 12467888888888899999
Q ss_pred HHHHHhCCCCCCcccccHHHHHHHHHHHh---CCceEEEEEcCccCcccccccccCC--CCCCCCCCCcEEEEEcCcHHH
Q 038105 122 TIGKKIGLYTDSWKDKRLEEKAQDIFKTL---SKKKFALLLDDLWERVDLKKVGVPL--PSRSNSPKNSAVVFTTRFVDV 196 (791)
Q Consensus 122 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l--~~~~~~~~~~~iivTtR~~~~ 196 (791)
.|++++..... ......+....+...+ .++++++|||+++...+-+.+...+ +.. ......||.++...+.
T Consensus 100 ~I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~--~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 100 KIWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISS--KNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHC--SSCCEEEEEECCSSCC
T ss_pred HHHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccc--cCCcEEEEEEecCccc
Confidence 99999854311 1122233344444443 4578999999998764222222111 110 1112334444432211
Q ss_pred ----H-----hhccccceEEeccCChHHHHHHHHHHhCc
Q 038105 197 ----C-----GRMEDRRMFKVACLSDEDAWELFREKVGE 226 (791)
Q Consensus 197 ----~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 226 (791)
. .++ ....+.+.+++.+|..+++.+++..
T Consensus 176 ~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 111 1247999999999999999998754
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=9.7e-10 Score=102.41 Aligned_cols=105 Identities=20% Similarity=0.301 Sum_probs=78.2
Q ss_pred CccEEEecCCCCcccchhhhccCCcccEEeecCccccccc-cccccCcccccEEecCCCcccccchh-hhcCCCCceeec
Q 038105 435 HLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQL-PMGISKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNL 512 (791)
Q Consensus 435 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l 512 (791)
..++++++++.+..++... .++|++|++++| .+..+ |..++.+++|++|+|++|+++.+|.. +..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3567888888887777542 377888888888 44444 55678888888888888888877665 578888888888
Q ss_pred cCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 513 DWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 513 ~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
++|.+ ..+|...+..+++|++|++++|.+..
T Consensus 86 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQL-KSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCcc-CEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 88876 56666557788888888888887554
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.94 E-value=4.2e-09 Score=109.82 Aligned_cols=180 Identities=11% Similarity=0.060 Sum_probs=108.9
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
-..|+|++..++++.+.+.. +...+.|.|+|+.|+|||++|+++++.. .. ..++++++......++.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHH---
T ss_pred HHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHH---
Confidence 35689999999999888763 2245689999999999999999999876 22 23344443332222111
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCC--------CCCC-------CCCCcE
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLP--------SRSN-------SPKNSA 186 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~--------~~~~-------~~~~~~ 186 (791)
..+...+ .++.+|+||+++.... ...+...+. .... ...+.+
T Consensus 82 --------------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 82 --------------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp --------------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred --------------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 1111111 2456889999976521 111111000 0000 012355
Q ss_pred EEEEcCcHHHH-hh-c-cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHHh
Q 038105 187 VVFTTRFVDVC-GR-M-EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRAM 260 (791)
Q Consensus 187 iivTtR~~~~~-~~-~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 260 (791)
+|.||...... .. . ....++.+.+++.++..+++.+.+....... ..+..+.+++.++|+|..+..+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666533211 11 1 1235799999999999999998875443222 25678899999999998877766544
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.9e-09 Score=112.65 Aligned_cols=182 Identities=16% Similarity=0.169 Sum_probs=113.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++|++..++.+..++..+ ..+.+.|+|+.|+|||++|+.+++.+. ...+ ..++.++++...+...+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~------ 95 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIRE------ 95 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTTHH------
T ss_pred HHhhCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHHHH------
Confidence 45899999999999999876 444599999999999999999998751 1111 1233444332211111111
Q ss_pred CCCCCCcccccHHHHHHHHHH---HhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHHH-hh-c
Q 038105 128 GLYTDSWKDKRLEEKAQDIFK---TLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC-GR-M 200 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~---~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~-~~-~ 200 (791)
....... ...+++.++|+||++... ....+...+.. ...+.++|+||...... .. .
T Consensus 96 --------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~---~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 96 --------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp --------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGGGSCHHHH
T ss_pred --------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh---cCCCCeEEEEeCCccccCHHHH
Confidence 1111111 112567899999997652 23333333333 34467888888654321 11 1
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHHHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIGRA 259 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 259 (791)
.....+++.+++.++..+++.+.+...+...+ ++..+.+++.++|.|..+..+...
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 12347899999999999999988754432222 567888999999999865544433
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=6.2e-10 Score=116.35 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecC
Q 038105 433 CPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDIS 490 (791)
Q Consensus 433 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~ 490 (791)
|++|+.|.+.. .+..+....|.+|++|+.|++++|....-.+..|..+.++.++.+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 66666666666 5556666666666666666666653222222334455455544443
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.92 E-value=9.3e-09 Score=109.57 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=112.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++||+..++.+.+.+..+...+.+.|+|+.|+||||+|+.+++..... .... ...+..... ...+...-.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~---~~~~~~~~~----~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT---ATPCGVCDN----CREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCT-TCSC---SSCCSSSHH----HHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCC---CCCCcccHH----HHHHhccCC
Confidence 45899999999999999876445788999999999999999999876211 1100 000000000 011110000
Q ss_pred -----CCCC-CcccccHHHHHHHHHHH-hCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHH-Hh
Q 038105 129 -----LYTD-SWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDV-CG 198 (791)
Q Consensus 129 -----~~~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~-~~ 198 (791)
.... ........+....+... ..+++.++|+||++... ..+.+...+.. ...+..+|++|....- ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS---CCSSEEEEEEESCGGGSCH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc---CCCceEEEEEeCChHhCcH
Confidence 0000 00111122222221111 12457899999997642 23334333333 3445677777764322 11
Q ss_pred -hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 199 -RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 199 -~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
.......+++.+++.++..+++.+.+...+... ..+.+..+++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 112346799999999999999998775433221 25667889999999998776554
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.86 E-value=2.7e-09 Score=111.47 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=124.9
Q ss_pred ccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccc-----------------c
Q 038105 411 WEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRM-----------------L 471 (791)
Q Consensus 411 ~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------~ 471 (791)
+.+|+.+.+.+ .+..++ .+..|++|+.+.++.|.+..+++..|..+.++.++.+..+.. +
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78999999988 777766 478899999999999998888888888888888877655210 0
Q ss_pred c---------ccccc---------------------------c-cCcccccEEecCCCcccccchh-hhcCCCCceeecc
Q 038105 472 Q---------QLPMG---------------------------I-SKLVSLQLLDISNTEVEELPEE-LKALVNLKCLNLD 513 (791)
Q Consensus 472 ~---------~lp~~---------------------------~-~~l~~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~ 513 (791)
. .+|.. + ..+++|+.|++++|+++.+|.. |..+++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0 00000 0 0267888888888888888765 8888889999888
Q ss_pred CcccccccchhHhhcCcCCC-eeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCc
Q 038105 514 WTDVLVEVPQQLLSNFSRLR-VLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCT 592 (791)
Q Consensus 514 ~~~~~~~~p~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 592 (791)
+| ...++...|.+|++|+ .+.+.. .++.+. ...|.+|++|+.++++.+.+..+
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~----------~~aF~~c~~L~~l~l~~n~i~~I------------- 312 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIE----------FGAFMGCDNLRYVLATGDKITTL------------- 312 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECT-TCCEEC----------TTTTTTCTTEEEEEECSSCCCEE-------------
T ss_pred cc--cceehHHHhhCChhccEEEEEcc-cceEEc----------hhhhhCCccCCEEEeCCCccCcc-------------
Confidence 87 4778877788888888 888877 554432 35678888888888876665432
Q ss_pred ccceeecCCCCCcccccccccccccceEEe
Q 038105 593 QAPFLYKFDREESIDVADLANLEQLNTLYF 622 (791)
Q Consensus 593 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l 622 (791)
....+.++++|+.++.
T Consensus 313 --------------~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 313 --------------GDELFGNGVPSKLIYK 328 (329)
T ss_dssp --------------CTTTTCTTCCCCEEEC
T ss_pred --------------chhhhcCCcchhhhcc
Confidence 2346778888888763
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.83 E-value=1.4e-08 Score=105.58 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=113.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++|++..++.+.+++..+ ..+.+.++|+.|+|||++|+.+++.+. ...+. .++.++.+...+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~---------- 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGID---------- 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCTT----------
T ss_pred HHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccChH----------
Confidence 45899999999999998876 444499999999999999999998752 11111 23334433321100
Q ss_pred CCCCCCcccccHHHHHHHHHHH--h-CCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHHH-Hhh-c
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKT--L-SKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVDV-CGR-M 200 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~~-~~~-~ 200 (791)
...+........ + .+++.++|+|+++... ..+.+...+.. ...+.++|+||..... ... .
T Consensus 84 ----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~---~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 84 ----------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM---YSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp ----------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS---SSSSEEEEEEESCGGGSCHHHH
T ss_pred ----------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh---cCCCCeEEEEeCChhhcchHHH
Confidence 011111111111 1 2567899999997652 23444444443 4456778877765431 111 1
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
.....+++.+++.++..+++.+.+...+... .++..+.+++.++|.+..+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2334799999999999999998876544222 25677889999999997654433
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=2.2e-09 Score=113.54 Aligned_cols=159 Identities=17% Similarity=0.137 Sum_probs=78.0
Q ss_pred cceeEEEcccCCCCCCC--C----C-CCCCCccEEEecCCCCcccch-hhhccCCcccEEeecCccccccccccc-----
Q 038105 412 EMVRRLSLMRNSIDNLP--T----V-PTCPHLLTLFLNDNELTTITD-DFFQSMPCLTVLKMSDIRMLQQLPMGI----- 478 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l~--~----~-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~lp~~~----- 478 (791)
++++.|++++|.+.... . + ...++|++|++++|.++.... .....+++|++|+|++|.........+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777664311 0 1 123566666666666543222 222334556666666663222211122
Q ss_pred cCcccccEEecCCCcccc-----cchhhhcCCCCceeeccCcccccc----cchhHhhcCcCCCeeeeeecCcccccccc
Q 038105 479 SKLVSLQLLDISNTEVEE-----LPEELKALVNLKCLNLDWTDVLVE----VPQQLLSNFSRLRVLRMFATGIRSVYGRF 549 (791)
Q Consensus 479 ~~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~~~~ 549 (791)
...++|++|+|++|.++. ++..+..+++|++|++++|.+... ++.. +..+++|++|++++|.++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g--- 227 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA--- 227 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH---
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH---
Confidence 234556666666665542 334445566666666666654211 1221 344556666666666554311
Q ss_pred ccchhchHHHhcCCCCCcEEEEEeechh
Q 038105 550 SSWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 550 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
...+...+...++|+.|++++|.+.
T Consensus 228 ---~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ---ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ---HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ---HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1123444445555666666555543
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.77 E-value=1.4e-08 Score=107.02 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred EEEcccC-CCCCCCCCCCCCCccEEEecC-CCCcccchhhhccCCcccEEeecCccccccccccccCcccccEEecCCCc
Q 038105 416 RLSLMRN-SIDNLPTVPTCPHLLTLFLND-NELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE 493 (791)
Q Consensus 416 ~l~l~~~-~~~~l~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 493 (791)
.++.+++ .+..+|.+..+.+|++|++++ |.+..+++..|.++++|++|+|++|...+..|..|+.|++|++|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 3566666 677777766777778888875 77777777767778888888888874333334457778888888888887
Q ss_pred ccccchhhhcCCCCceeeccCcccc
Q 038105 494 VEELPEELKALVNLKCLNLDWTDVL 518 (791)
Q Consensus 494 l~~lp~~~~~l~~L~~L~l~~~~~~ 518 (791)
|+.+|..+....+|+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 7777765433334788888777763
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=5.1e-08 Score=104.01 Aligned_cols=151 Identities=17% Similarity=0.205 Sum_probs=97.2
Q ss_pred CCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccc-ccccCcccccEEecCCCcccccchhhhcCCCCc
Q 038105 430 VPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLP-MGISKLVSLQLLDISNTEVEELPEELKALVNLK 508 (791)
Q Consensus 430 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~~L~ 508 (791)
+.++ +|+.+.+..+ +..+....|.++ +|+.+.+..+ +..++ ..|.+|.+|+.+++..|+++.+|...-.+.+|+
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccC
Confidence 3443 6888887765 666776667664 5888888753 44443 457778888888888888887776644467888
Q ss_pred eeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccc
Q 038105 509 CLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKL 588 (791)
Q Consensus 509 ~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 588 (791)
.+.+..+ +..++...|.+|++|+.+.+..+ ++.+.. ..|.+ .+|+.+.+.. .
T Consensus 207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~----------~aF~~-~~L~~i~lp~-~------------- 258 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ----------EAFRE-SGITTVKLPN-G------------- 258 (401)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECT----------TTTTT-CCCSEEEEET-T-------------
T ss_pred EEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccc----------ccccc-CCccEEEeCC-C-------------
Confidence 8888754 36777766788888888887653 333211 23333 4677766632 1
Q ss_pred cCCcccceeecCCCCCcccccccccccccceEEecccCC
Q 038105 589 RSCTQAPFLYKFDREESIDVADLANLEQLNTLYFRSCGW 627 (791)
Q Consensus 589 ~~~l~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 627 (791)
.+.+....+.++++|+.+.+.++..
T Consensus 259 --------------i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 259 --------------VTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp --------------CCEECTTTTTTCTTCCEEEEESSCC
T ss_pred --------------ccEEChhHhhCCCCCCEEEeCCccc
Confidence 1222234566777788888776544
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=8.5e-10 Score=116.63 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=86.9
Q ss_pred cceeEEEcccCCCCCC--CCC-CCCCCccEEEecCCCCcccchhhh-----ccCCcccEEeecCccccc----ccccccc
Q 038105 412 EMVRRLSLMRNSIDNL--PTV-PTCPHLLTLFLNDNELTTITDDFF-----QSMPCLTVLKMSDIRMLQ----QLPMGIS 479 (791)
Q Consensus 412 ~~l~~l~l~~~~~~~l--~~~-~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~----~lp~~~~ 479 (791)
.+++.|++++|.+... ..+ ..+++|+.|++++|.++......+ ...++|++|++++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5788888888876531 112 234578888888887765544333 346778888888884322 2444456
Q ss_pred CcccccEEecCCCcccc-----cchhhhcCCCCceeeccCcccccc----cchhHhhcCcCCCeeeeeecCccc
Q 038105 480 KLVSLQLLDISNTEVEE-----LPEELKALVNLKCLNLDWTDVLVE----VPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 480 ~l~~L~~L~L~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
.+++|++|+|++|.+.. ++..+...++|+.|++++|.+... ++.. +..+++|++|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~-L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA-AREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH-HHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH-HHhCCCCCEEeccCCCCCH
Confidence 67788888888887762 345567777888888888876322 2222 3466788888888887655
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.72 E-value=2.6e-08 Score=94.96 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=86.8
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCCEEEEEEeCCccCHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
-..++||+.+++++.+.+... ..+.+.|+|+.|+|||++|+++++.+..... ....++++++.. .
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---- 89 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L---- 89 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H----
T ss_pred ccccccchHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H----
Confidence 356899999999999999875 5577899999999999999999887622110 122344544311 1
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHh--CCceEEEEEcCccCcc---------ccc-ccccCCCCCCCCCCCcEEEEEc
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTL--SKKKFALLLDDLWERV---------DLK-KVGVPLPSRSNSPKNSAVVFTT 191 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~-~~~~~l~~~~~~~~~~~iivTt 191 (791)
. .. . . ...........+.+.+ .+++.+|||||++... ++. .+...+. ..+..+|.||
T Consensus 90 ~---~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~~i~~~ 158 (195)
T 1jbk_A 90 V---AG-A-K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELHCVGAT 158 (195)
T ss_dssp H---TT-T-C-SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTSCCEEEEE
T ss_pred h---cc-C-C-ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCCeEEEEeC
Confidence 0 00 0 0 1111222223333322 4568899999997642 111 1111111 2245566666
Q ss_pred CcHHHHh-------hccccceEEeccCChHHHHHHH
Q 038105 192 RFVDVCG-------RMEDRRMFKVACLSDEDAWELF 220 (791)
Q Consensus 192 R~~~~~~-------~~~~~~~~~l~~l~~~e~~~l~ 220 (791)
....... .......+.+.+++.++..+++
T Consensus 159 ~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 159 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 6543211 1112236889999988877654
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.71 E-value=1.5e-08 Score=100.62 Aligned_cols=174 Identities=8% Similarity=0.073 Sum_probs=103.9
Q ss_pred Ccccch---HHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 49 PTVVGL---QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 49 ~~~vGR---~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
..|+|+ +..++.+..+.... ..+.+.|+|+.|+||||+|+.+++... .....+.|+++...... +.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~------~~~ 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI------STA 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS------CGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH------HHH
Confidence 457763 35666666666554 568899999999999999999998872 22334667775432110 000
Q ss_pred HhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----ccccccCCCCCCCCCCCcEEEEEcCcHH------
Q 038105 126 KIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----LKKVGVPLPSRSNSPKNSAVVFTTRFVD------ 195 (791)
Q Consensus 126 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~~~iivTtR~~~------ 195 (791)
..+.+ .++.++|+||++.... .+.+...+.... .....++|+||+...
T Consensus 98 --------------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~-~~~~~~ii~~~~~~~~~~~~~ 155 (242)
T 3bos_A 98 --------------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA-EQKRGSLIVSASASPMEAGFV 155 (242)
T ss_dssp --------------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH-HHCSCEEEEEESSCTTTTTCC
T ss_pred --------------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHH-HcCCCeEEEEcCCCHHHHHHh
Confidence 00111 3457899999975422 122222211100 011224777766321
Q ss_pred ---HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 196 ---VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 196 ---~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
+...+.....+++.+++.++..+++...+...+... .++..+.+++.++|.+..+..+.
T Consensus 156 ~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 156 LPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 122222236899999999999999998875433222 25678889999999987665544
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.66 E-value=3.5e-07 Score=93.12 Aligned_cols=180 Identities=19% Similarity=0.216 Sum_probs=105.3
Q ss_pred CCcccchHHHHHHHHHHhccC------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~------------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 115 (791)
-..++|.+..++++.+.+... ...+.+.|+|++|+|||++|+++++.. .. ..+.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHH
Confidence 356899999999999887431 345789999999999999999999886 22 233333321100
Q ss_pred HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH-HhCCceEEEEEcCccCcc----------c------ccccccCCCCC
Q 038105 116 LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK-TLSKKKFALLLDDLWERV----------D------LKKVGVPLPSR 178 (791)
Q Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~----------~------~~~~~~~l~~~ 178 (791)
. ...........+.. .....+.+|+|||++... . +..+...+...
T Consensus 90 -----------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 90 -----------------K-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp -----------------C-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred -----------------h-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 0 01111222222222 234567899999996531 0 11111111110
Q ss_pred CCCCCCcEEEEEcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCC-CchH
Q 038105 179 SNSPKNSAVVFTTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDG-LPLA 252 (791)
Q Consensus 179 ~~~~~~~~iivTtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Pla 252 (791)
....+..||.||....... .......+.+...+.++..+++...+......... ....++..+.| .|..
T Consensus 152 -~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~----~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 152 -DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV----NLEEIAKMTEGCVGAE 226 (285)
T ss_dssp -CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHHCTTCCHHH
T ss_pred -CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC----CHHHHHHHcCCCCHHH
Confidence 0233567777887543321 11233478999999999999999887654432222 25667777777 4544
Q ss_pred HHHH
Q 038105 253 LITI 256 (791)
Q Consensus 253 l~~~ 256 (791)
+..+
T Consensus 227 i~~l 230 (285)
T 3h4m_A 227 LKAI 230 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=1.1e-07 Score=100.43 Aligned_cols=193 Identities=12% Similarity=0.142 Sum_probs=111.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCC-CCCCCEEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDN-PTDFDYVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++|++..++.+..++..+ ..+.+.|+|+.|+||||+|+.+++.+... ... ..+..++.+.......+...+....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMK-SRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT-TSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccc-cceEEEccccccchHHHHHHHHHHh
Confidence 55899999999999999876 33448999999999999999998875100 011 1233444443333332222221111
Q ss_pred CCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEEEEcCcHH-HHhh-cccc
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCGR-MEDR 203 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~~-~~~~ 203 (791)
...... .... .....-..++-++++|+++.... ...+...+.. .....++|++|.... +... ....
T Consensus 115 ~~~~~~-~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~---~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 115 RLTVSK-PSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMET---YSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HSCCCC-CCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred hhcccc-cchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh---cCCCceEEEEeCchhhCcchhhccC
Confidence 100000 0000 00011123567999999975422 2223333322 233466777665332 1111 1123
Q ss_pred ceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 204 RMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 204 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
..+++.+++.++..+.+.+.+...+... .++..+.|++.++|.|..+..+
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKC---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 4789999999999999998875443222 2677889999999999764433
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.60 E-value=9.3e-08 Score=100.61 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=83.1
Q ss_pred cEEEecCC-CCcccchhhhccCCcccEEeecC-cccccccc-ccccCcccccEEecCCCcccccch-hhhcCCCCceeec
Q 038105 437 LTLFLNDN-ELTTITDDFFQSMPCLTVLKMSD-IRMLQQLP-MGISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNL 512 (791)
Q Consensus 437 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l 512 (791)
..++++++ .+..+|. +..+.+|++|+|++ | .+..+| ..|+.|++|++|+|++|+|+.+|. .|+++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 34688887 7887776 88889999999986 7 666666 568899999999999999987754 5789999999999
Q ss_pred cCcccccccchhHhhcCcCCCeeeeeecCccc
Q 038105 513 DWTDVLVEVPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 513 ~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
++|.+ ..+|...+..++ |+.|++.+|.+..
T Consensus 88 ~~N~l-~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNAL-ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCC-SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCcc-ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99987 677776565565 9999999888654
No 169
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=2.9e-07 Score=98.12 Aligned_cols=149 Identities=12% Similarity=0.217 Sum_probs=110.6
Q ss_pred ccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCccccc
Q 038105 408 VRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQ 485 (791)
Q Consensus 408 ~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~ 485 (791)
+.+ .+++.+.+..+ +..+. .+.+ .+|+.+.+.. .+..+....|.+|++|+.+++.+| .+..+|.....+.+|+
T Consensus 132 F~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 132 FRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIE 206 (401)
T ss_dssp TTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCS
T ss_pred ccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccC
Confidence 344 36888888665 55444 3445 4699999986 677788788999999999999988 6777777655578999
Q ss_pred EEecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecCccccccccccchhchHHHhcCCC
Q 038105 486 LLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLK 564 (791)
Q Consensus 486 ~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 564 (791)
.+.+..+ ++.++. .|.++++|+.+++..+ +..++...|.+ .+|+.+.+. +.++.+. ...|.+|+
T Consensus 207 ~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~----------~~aF~~c~ 271 (401)
T 4fdw_A 207 EVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIA----------SRAFYYCP 271 (401)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEEC----------TTTTTTCT
T ss_pred EEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEC----------hhHhhCCC
Confidence 9999854 777755 4888999999999875 36777776777 789999984 4444432 35678899
Q ss_pred CCcEEEEEeech
Q 038105 565 HLEVLEITFRSF 576 (791)
Q Consensus 565 ~L~~L~l~~~~~ 576 (791)
+|+.+.+..+..
T Consensus 272 ~L~~l~l~~~~~ 283 (401)
T 4fdw_A 272 ELAEVTTYGSTF 283 (401)
T ss_dssp TCCEEEEESSCC
T ss_pred CCCEEEeCCccc
Confidence 999999877654
No 170
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.58 E-value=5.2e-06 Score=86.72 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=104.5
Q ss_pred CCcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETI 123 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 123 (791)
-..++|++..++++..++.. ....+.|.|+|+.|+|||++|+++++.. ... .+.+++.......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~---~~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SAN---IKTTAAPMIEKSG------ 95 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCC---EEEEEGGGCCSHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCC---eEEecchhccchh------
Confidence 35689999999999998864 2345678999999999999999998876 222 2333332221111
Q ss_pred HHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCC---------------CCCCCCcE
Q 038105 124 GKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSR---------------SNSPKNSA 186 (791)
Q Consensus 124 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~---------------~~~~~~~~ 186 (791)
.....+. . ..++.+|+||+++.... ...+...+... ....++.+
T Consensus 96 -----------------~~~~~~~-~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 96 -----------------DLAAILT-N-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -----------------HHHHHHH-T-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -----------------HHHHHHH-h-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 1111111 1 23557889999975421 11111111000 00111355
Q ss_pred EEEEcCcHHHH-hh-c-cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 187 VVFTTRFVDVC-GR-M-EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 187 iivTtR~~~~~-~~-~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
+|.+|...... .. . .....+.+.+++.++..+++.+.+....... ..+..+.+++.+.|+|..+..+.
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTC---EEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEE---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHCcCHHHHHHHH
Confidence 66655532211 11 1 2235799999999999999988875433221 25677888999999996555443
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=3.7e-07 Score=100.99 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=110.2
Q ss_pred CcccchHHHHHHHHHHhccC----------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 49 PTVVGLQSQLEQVWRCLVQE----------------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~----------------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
.+++|++..++++.+++... +..+.+.|+|+.|+|||++|+.+++.. .+ .++.++++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 56899999999999998751 134789999999999999999999886 12 345566655
Q ss_pred ccCHHHHHHHHHHHhCCCC-CCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc-----ccccccCCCCCCCCCCCcE
Q 038105 113 DLQLEKIQETIGKKIGLYT-DSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD-----LKKVGVPLPSRSNSPKNSA 186 (791)
Q Consensus 113 ~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~~~~~ 186 (791)
......+...+........ ...- ....+ ......++.+||||+++.... +..+...+.. .+..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~~~~ 181 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYF-KHNEE-----AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----TSTP 181 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTT-TC---------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----CSSC
T ss_pred cchHHHHHHHHHHHhccccHHHHH-hhhhh-----hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----cCCC
Confidence 4443322222211111000 0000 00000 001235678999999976522 1222222221 1233
Q ss_pred EEEEcCcHH---HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc-hHHHHHH
Q 038105 187 VVFTTRFVD---VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP-LALITIG 257 (791)
Q Consensus 187 iivTtR~~~---~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 257 (791)
||+++.+.. +.........+.+.+++.++..+++.+.+.......+ ++....|++.++|.+ .++..+.
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 555444322 1122223457899999999999999887765443332 345788999999955 4455444
No 172
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.54 E-value=4.7e-07 Score=94.13 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=103.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
..++|++..++.+.+++..+...+++.+.|+.|+|||++|+++++.. . ..++.++++... ...+...+ .
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~~-~~~i~~~~-~--- 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDCK-IDFVRGPL-T--- 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTCC-HHHHHTHH-H---
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEcccccC-HHHHHHHH-H---
Confidence 56899999999999999976456788888999999999999999886 1 234555544321 22111111 1
Q ss_pred CCCCCcccccHHHHHHHHHHH--hCCceEEEEEcCccCcc---cccccccCCCCCCCCCCCcEEEEEcCcHHHH-hh-cc
Q 038105 129 LYTDSWKDKRLEEKAQDIFKT--LSKKKFALLLDDLWERV---DLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC-GR-ME 201 (791)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~--l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~-~~-~~ 201 (791)
..... ..+++-++|+||++... ..+.+...+.. ...+.++|+||....-. .. ..
T Consensus 95 ----------------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~---~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 95 ----------------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA---YSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp ----------------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH---HGGGCEEEEEESSGGGSCTTHHH
T ss_pred ----------------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh---CCCCcEEEEEeCCccccCHHHHh
Confidence 11111 12367899999998664 22233222222 22356777777653321 10 11
Q ss_pred ccceEEeccCChHHHHHHHHH-------HhCccccCCCCChH-HHHHHHHHHcCCCchHH
Q 038105 202 DRRMFKVACLSDEDAWELFRE-------KVGEETIESHHSIP-ELAQTVAKECDGLPLAL 253 (791)
Q Consensus 202 ~~~~~~l~~l~~~e~~~l~~~-------~~~~~~~~~~~~~~-~~~~~i~~~~~g~Plal 253 (791)
...++++++++.++..+++.. .+...+...+ + +....+++.++|.+..+
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~---~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA---DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS---CHHHHHHHHHHTCSCTTHH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC---cHHHHHHHHHhCCCCHHHH
Confidence 234799999998885443322 2222221111 3 67788888898887643
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.52 E-value=6e-07 Score=96.84 Aligned_cols=184 Identities=18% Similarity=0.146 Sum_probs=106.7
Q ss_pred ccc-chHH--HHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 50 TVV-GLQS--QLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 50 ~~v-GR~~--~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
.|| |... ....+.......+..+.+.|+|++|+||||||+.+++..... .....++++++.. +...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~------~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEK------FLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHH------HHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHH------HHHHHHHH
Confidence 455 6332 333444444433226789999999999999999999876211 1122355665432 33333333
Q ss_pred hCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----ccccccCCCCCCCCCCCcEEEEEcCcH--------
Q 038105 127 IGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----LKKVGVPLPSRSNSPKNSAVVFTTRFV-------- 194 (791)
Q Consensus 127 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~~~iivTtR~~-------- 194 (791)
+... . ...+.+.++.++-+|+|||++.... .+.+...+... ...|..||+||..+
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l--~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNEL--HDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHH--HTTTCEEEEEESSCGGGCSSCC
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHH--HHCCCeEEEEECCCHHHHHHHH
Confidence 3211 1 1223344444667999999975432 11222222110 13356788888752
Q ss_pred -HHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 195 -DVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 195 -~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
.+...+....++.+++++.++..+++.+.+...+...+ ++....|++.++|.+..+..+
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 22223333467899999999999999988754443233 355778889999998655433
No 174
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.51 E-value=9.2e-07 Score=91.52 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=107.7
Q ss_pred CcccchHHHHHHHHHHhc----------c-CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLV----------Q-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~----------~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..++|.+..++++.+.+. . ....+.|.|+|+.|+|||++|+++++.. ... .+.++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 458999999999998872 1 1235689999999999999999999886 222 2333321
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc-------------ccccccCCCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~ 183 (791)
. +... ...........+.... ...+.+|+||+++.... ...+...+........
T Consensus 86 ~----l~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 D----LVSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp H----HHTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred H----Hhhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1 1111 1112233333333333 34678999999975421 1111111111101234
Q ss_pred CcEEEEEcCcHHHHhh---ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHHH
Q 038105 184 NSAVVFTTRFVDVCGR---MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITIG 257 (791)
Q Consensus 184 ~~~iivTtR~~~~~~~---~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 257 (791)
+..||.||..+..... ......+.+...+.++..+++..++....... .......+++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566667764322110 12345788899999999999999886543211 255678899999874 55555544
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.51 E-value=1.1e-06 Score=94.49 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=105.0
Q ss_pred CCcccchHHHH---HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 48 EPTVVGLQSQL---EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 48 ~~~~vGR~~~~---~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
-..+||.+..+ ..+...+..+ ..+.+.|+|+.|+||||+|+.+++.. ...| ..+++.. .+...+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~-~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f---~~l~a~~-~~~~~ir---- 92 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG-HLHSMILWGPPGTGKTTLAEVIARYA---NADV---ERISAVT-SGVKEIR---- 92 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT-CCCEEEEECSTTSSHHHHHHHHHHHT---TCEE---EEEETTT-CCHHHHH----
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC-CCcEEEEECCCCCcHHHHHHHHHHHh---CCCe---EEEEecc-CCHHHHH----
Confidence 35689999988 7788888776 56789999999999999999999886 2222 2222211 1222111
Q ss_pred HHhCCCCCCcccccHHHHHHHHH-HHhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEE-EcCcHHH---H
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIF-KTLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVF-TTRFVDV---C 197 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iiv-TtR~~~~---~ 197 (791)
+...... .....++.+|+||+++... ..+.+...+.. + ...+|. ||.++.. .
T Consensus 93 ----------------~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~----~-~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 93 ----------------EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED----G-TITFIGATTENPSFELNS 151 (447)
T ss_dssp ----------------HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT----T-SCEEEEEESSCGGGSSCH
T ss_pred ----------------HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc----C-ceEEEecCCCCcccccCH
Confidence 1111111 1124567899999997652 22333333322 1 233443 5554321 1
Q ss_pred hhccccceEEeccCChHHHHHHHHHHhCcccc----CCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 198 GRMEDRRMFKVACLSDEDAWELFREKVGEETI----ESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 198 ~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~----~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
.......++.+.+++.++..+++.+.+..... ....-.++..+.+++.++|.+..+..+.
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11233457899999999999999988754110 0011225677888889999886554433
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.50 E-value=4.4e-06 Score=86.17 Aligned_cols=182 Identities=14% Similarity=0.163 Sum_probs=106.2
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+...++|.+.+.. ....+.|.|+|+.|+|||++|+++++.. .. ...+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~--~~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TS--CEEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---CC--CcEEEEEhHHHHh--
Confidence 5689999988888887631 1234789999999999999999999875 11 1233444432110
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc-------------ccccccCCCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~ 183 (791)
.+. +........+.+.. ..++.+|+||+++.... ...+...+........
T Consensus 85 ---------------~~~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWL-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSC-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhh-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 001 11122233333332 35678999999975411 0011111111100223
Q ss_pred CcEEEEEcCcHH-----HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHHH
Q 038105 184 NSAVVFTTRFVD-----VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITIG 257 (791)
Q Consensus 184 ~~~iivTtR~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 257 (791)
+..||.||..+. +.. .....+.+...+.++..+++..++....... .+.....+++.+.|. +..|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455555665332 222 3345788999999999999998876543211 256678899999987 44455554
Q ss_pred H
Q 038105 258 R 258 (791)
Q Consensus 258 ~ 258 (791)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.49 E-value=2.7e-06 Score=89.22 Aligned_cols=183 Identities=14% Similarity=0.094 Sum_probs=106.1
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..++|.+..++++.+.+.. ....+.|.|+|+.|+|||++|++++... .. ..+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4589999999999988742 1246789999999999999999999876 22 234555432110
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc-------------ccccccCCCCCC-CCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRS-NSP 182 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~-~~~ 182 (791)
. ...........+.... ...+.+|+||+++.... ...+...+.... ...
T Consensus 156 ---------------~-~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ---------------K-WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ---------------S-STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ---------------c-ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 0111122222333322 35678999999964311 111111111100 012
Q ss_pred CCcEEEEEcCcHHHHh---hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCC-CchHHHHHHH
Q 038105 183 KNSAVVFTTRFVDVCG---RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDG-LPLALITIGR 258 (791)
Q Consensus 183 ~~~~iivTtR~~~~~~---~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 258 (791)
.+..||.||....... .......+.+...+.++..+++...+....... ..+..+.+++.+.| .+..|..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455565665432211 012234678899999999999988775433211 25678889999988 4555655543
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.48 E-value=4.4e-06 Score=84.20 Aligned_cols=199 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred CcccchHHHHHHHHH-------Hhcc--CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 49 PTVVGLQSQLEQVWR-------CLVQ--EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~-------~L~~--~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
..++|+...++++.+ .+.. ....+.+.|+|+.|+|||++|+++++.. .. . .+.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~--~-~~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NF--P-FIKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TC--S-EEEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CC--C-EEEEeCHHH------
Confidence 457787777666665 2321 2356789999999999999999999875 22 2 222332210
Q ss_pred HHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc------------cccccccCCCCCCCCCCCcEE
Q 038105 120 QETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV------------DLKKVGVPLPSRSNSPKNSAV 187 (791)
Q Consensus 120 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~~~~~~~~l~~~~~~~~~~~i 187 (791)
..+.. ...........+......++.+|+|||++... .++.+...+......+....|
T Consensus 101 ------~~g~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 ------MIGFS----ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ------CTTCC----HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ------hcCCc----hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 01100 00111122222333334678999999996531 112222222221112233456
Q ss_pred EEEcCcHHHHhh---c-cccceEEeccCCh-HHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC------chHHHHH
Q 038105 188 VFTTRFVDVCGR---M-EDRRMFKVACLSD-EDAWELFREKVGEETIESHHSIPELAQTVAKECDGL------PLALITI 256 (791)
Q Consensus 188 ivTtR~~~~~~~---~-~~~~~~~l~~l~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~------Plal~~~ 256 (791)
|.||..+..... . .....+++.+++. ++..+++.+... . ..+....+++.+.|. +.++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 667776644332 1 1245688999988 666666655321 1 156678888888884 3333333
Q ss_pred HHHhhcCCCHHHHHHHHHHHhh
Q 038105 257 GRAMAYKKTPEEWRYAIEVLRR 278 (791)
Q Consensus 257 ~~~l~~~~~~~~w~~~l~~l~~ 278 (791)
-.+. .......+...++.+..
T Consensus 243 ~~a~-~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 243 EMSL-QMDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHHT-TSCGGGHHHHHHHHHHH
T ss_pred HHHh-hhchHHHHHHHHHHHHH
Confidence 3222 22344555665555544
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.48 E-value=3e-06 Score=84.96 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred CcccchHHHHHHHHHHhcc---C--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ---E--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~---~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+...+++.+.+.. . ...+.+.|+|++|+|||++|+++++.. ... .+.++++.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 4589999888887765431 1 234678999999999999999999986 222 34444433210
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc-------------c----ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV-------------D----LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~----~~~~~~~l~~~~~ 180 (791)
.+...........+.......+.+|+||+++... . +..+...+....
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~- 141 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG- 141 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-
Confidence 0011111112222222223457899999997541 0 111111111100
Q ss_pred CCCCcEEEEEcCcHHHHhh--c---cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHH
Q 038105 181 SPKNSAVVFTTRFVDVCGR--M---EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALI 254 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~~--~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~ 254 (791)
...+..||.||........ . .....+.++..+.++..+++...+...... .........+++.+.|.+- .|.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHH
Confidence 1234566667754432111 1 223578899999999999998887544321 1122345778888888754 444
Q ss_pred HHH
Q 038105 255 TIG 257 (791)
Q Consensus 255 ~~~ 257 (791)
.+.
T Consensus 220 ~l~ 222 (262)
T 2qz4_A 220 NIC 222 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.47 E-value=2.5e-06 Score=88.73 Aligned_cols=168 Identities=12% Similarity=0.109 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-------------------CCCEEEEEEeCCccC
Q 038105 55 QSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------------------DFDYVIWVVVSKDLQ 115 (791)
Q Consensus 55 ~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~~~~~~~ 115 (791)
+...+.+...+..+.-.+.+.++|+.|+|||++|+.+++.+..... +++ +.++....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~--- 83 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEK--- 83 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCT---
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccc---
Confidence 5566778888877645678999999999999999999987621110 011 22222110
Q ss_pred HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-----CCceEEEEEcCccCccc--ccccccCCCCCCCCCCCcEEE
Q 038105 116 LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-----SKKKFALLLDDLWERVD--LKKVGVPLPSRSNSPKNSAVV 188 (791)
Q Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~~~~~ii 188 (791)
.......++. +.+.+.+ .+++-++|+|+++.... ...+...+.. ...++.+|
T Consensus 84 -----------------~~~~~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe---p~~~~~~I 142 (334)
T 1a5t_A 84 -----------------GKNTLGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE---PPAETWFF 142 (334)
T ss_dssp -----------------TCSSBCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS---CCTTEEEE
T ss_pred -----------------cCCCCCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC---CCCCeEEE
Confidence 0011122222 2233333 24567899999986532 3334444433 34467777
Q ss_pred EEcCcHH-HHh-hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHH
Q 038105 189 FTTRFVD-VCG-RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALIT 255 (791)
Q Consensus 189 vTtR~~~-~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 255 (791)
++|.++. +.. ..+....+++.++++++..+++.+... . .++.+..+++.++|.|..+..
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHH
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHH
Confidence 7776543 211 123345799999999999999988751 1 145678899999999975543
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=2.7e-07 Score=97.32 Aligned_cols=195 Identities=10% Similarity=0.107 Sum_probs=104.0
Q ss_pred CcccchHHHHHHHHHHh-ccCCCceEEEEEcCCCCcHHHHHHHHHhcccC-CCCC--CCE--------------------
Q 038105 49 PTVVGLQSQLEQVWRCL-VQEPAAGIIGLYGMGGVGKTTLLTQINNKFVD-NPTD--FDY-------------------- 104 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L-~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~-~~~~--f~~-------------------- 104 (791)
..++|++..++.+.+++ ..+...+ +.|+|+.|+||||+|+.++..+.. ..+. ++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 55899999999999998 5543334 999999999999999999885411 1110 000
Q ss_pred EEEEEeCCcc-CHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCCCCCC
Q 038105 105 VIWVVVSKDL-QLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPSRSNS 181 (791)
Q Consensus 105 ~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~ 181 (791)
.+.+..+... ......+++...+..... ..... .+ .-+..++-++|+|+++..+. ...+...+.. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~---~ 161 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEK---Y 161 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHH---S
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHh---h
Confidence 0111111000 000011111111110000 00000 00 00233567999999976422 2223333322 2
Q ss_pred CCCcEEEEEcCcHH-HHh-hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHHH
Q 038105 182 PKNSAVVFTTRFVD-VCG-RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITIG 257 (791)
Q Consensus 182 ~~~~~iivTtR~~~-~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 257 (791)
..+.++|++|.+.. +.. .......+++.+++.++..+++.+.+...+...+. ++.++.|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 33567777776532 111 11233679999999999999999887544321110 3567889999999986544443
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.46 E-value=6.8e-07 Score=94.80 Aligned_cols=196 Identities=14% Similarity=0.138 Sum_probs=103.7
Q ss_pred CCcccchHHHHHHH---HHHhccCC-CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC----CccCHHHH
Q 038105 48 EPTVVGLQSQLEQV---WRCLVQEP-AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS----KDLQLEKI 119 (791)
Q Consensus 48 ~~~~vGR~~~~~~l---~~~L~~~~-~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~~~~~~~~ 119 (791)
-..|||++...+.+ .+.+.... ..+.+.|+|+.|+|||++|+++++.. ..... .+.+... ........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL---GPDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH---CSSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh---cccCC-cccccchhhhhcccchhHH
Confidence 35699999987764 44444442 23689999999999999999999987 22111 2222321 12222233
Q ss_pred HHHHHHHh-CCC--------------------CC----Cc---c---cccHHHHHHHHHHHh--CCc----eEEEEEcCc
Q 038105 120 QETIGKKI-GLY--------------------TD----SW---K---DKRLEEKAQDIFKTL--SKK----KFALLLDDL 162 (791)
Q Consensus 120 ~~~i~~~l-~~~--------------------~~----~~---~---~~~~~~~~~~l~~~l--~~~----~~LlVlDdv 162 (791)
..+..... +.. .. .. . ............... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 33332221 100 00 00 0 011111222222211 122 459999999
Q ss_pred cCcc--cccccccCCCCCCCCCCCcEEEEEcC-c----------------HHHHhhccccceEEeccCChHHHHHHHHHH
Q 038105 163 WERV--DLKKVGVPLPSRSNSPKNSAVVFTTR-F----------------VDVCGRMEDRRMFKVACLSDEDAWELFREK 223 (791)
Q Consensus 163 ~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR-~----------------~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~ 223 (791)
+... ....+...+.. .... .++++|. . +.+.. ....+.+.+++.++..+++.+.
T Consensus 199 ~~l~~~~~~~L~~~le~---~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 199 HMLDIESFSFLNRALES---DMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp GGSBHHHHHHHHHHTTC---TTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHhhC---cCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHH
Confidence 7652 12222222322 2222 3333332 1 12222 2245899999999999999988
Q ss_pred hCccccCCCCChHHHHHHHHHHcC-CCchHHHHHH
Q 038105 224 VGEETIESHHSIPELAQTVAKECD-GLPLALITIG 257 (791)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~ 257 (791)
+....... .++..+.+++.+. |.|..+..+.
T Consensus 272 ~~~~~~~~---~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 272 CEEEDVEM---SEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHTTCCB---CHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcCCCC---CHHHHHHHHHHhcCCCHHHHHHHH
Confidence 76533222 2567888888887 8876554433
No 183
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.40 E-value=2.1e-06 Score=89.13 Aligned_cols=169 Identities=16% Similarity=0.154 Sum_probs=95.8
Q ss_pred HHHHHHHHhccCC-CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcc
Q 038105 57 QLEQVWRCLVQEP-AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWK 135 (791)
Q Consensus 57 ~~~~l~~~L~~~~-~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 135 (791)
....+...+.... ..+.+.|+|+.|+||||||+.+++..... -..++++++. .....+...+..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~------~~~~~~~~~~~~------ 86 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSAD------DFAQAMVEHLKK------ 86 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHH------HHHHHHHHHHHH------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHH------HHHHHHHHHHHc------
Confidence 3444555544432 35689999999999999999999876321 2235566542 223333322210
Q ss_pred cccHHHHHHHHHHHhCCceEEEEEcCccCccc----ccccccCCCCCCCCCCCcEEEEEcCcH---------HHHhhccc
Q 038105 136 DKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----LKKVGVPLPSRSNSPKNSAVVFTTRFV---------DVCGRMED 202 (791)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~~~~~~~~~iivTtR~~---------~~~~~~~~ 202 (791)
.... .+..... ++.+|+|||++.... .+.+...+... ...+..+|+|+... .+...+..
T Consensus 87 -~~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~--~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~ 158 (324)
T 1l8q_A 87 -GTIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTL--YLLEKQIILASDRHPQKLDGVSDRLVSRFEG 158 (324)
T ss_dssp -TCHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHH--HHTTCEEEEEESSCGGGCTTSCHHHHHHHHT
T ss_pred -CcHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHH--HHCCCeEEEEecCChHHHHHhhhHhhhcccC
Confidence 0111 1122222 367999999976432 11222121110 12345677777532 12222333
Q ss_pred cceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 203 RRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 203 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
..++++++ +.++..+++.+.+.......+ ++..+.+++.+ |....+
T Consensus 159 ~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 159 GILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp SEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHHH
T ss_pred ceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHHH
Confidence 36799999 999999999988754432222 56778889999 877543
No 184
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.40 E-value=1.9e-06 Score=90.24 Aligned_cols=180 Identities=17% Similarity=0.151 Sum_probs=104.7
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..++|.+..+++|.+.+.. ....+.|.|+|+.|+|||++|+++++.. .. ..+.++++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~---~~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NS---TFFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TC---EEEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CC---CEEEeeHH------
Confidence 4589999999999887731 1134568999999999999999999987 22 22333321
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc-------------ccccccCCCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~ 183 (791)
.+ .... . .........+.... ...+.+|+||+++.... ...+...+........
T Consensus 119 ~l----~~~~-------~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DL----VSKW-------M-GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HH----HSCC-----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HH----hhhh-------c-chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 1110 0 11122223333332 35679999999975421 1111111111000233
Q ss_pred CcEEEEEcCcHH-----HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCC-CchHHHHHH
Q 038105 184 NSAVVFTTRFVD-----VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDG-LPLALITIG 257 (791)
Q Consensus 184 ~~~iivTtR~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~ 257 (791)
+..||.||..+. +.. .....+.+...+.++..+++..++....... .......|++.+.| .+..|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455665665432 222 3345788999999999999998876543211 15567889999988 454555554
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=7.1e-07 Score=93.33 Aligned_cols=146 Identities=19% Similarity=0.185 Sum_probs=89.0
Q ss_pred hhhhccCCcccEEeecCccccccccccccCcccccEEecCCCcccc-cchhhh--cCCCCceeeccCc--cccc-----c
Q 038105 451 DDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTEVEE-LPEELK--ALVNLKCLNLDWT--DVLV-----E 520 (791)
Q Consensus 451 ~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-lp~~~~--~l~~L~~L~l~~~--~~~~-----~ 520 (791)
...+..+|+|+.|++++|... .+|. +. +++|++|++..|.+.. ....+. .+++|+.|+|+.+ ...+ .
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345678899999999887323 3443 43 7889999998887652 222333 7889999988532 1111 1
Q ss_pred cchhH-hhcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechhhHHHhhhcccccCCcccceeec
Q 038105 521 VPQQL-LSNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEAYQTFLSSQKLRSCTQAPFLYK 599 (791)
Q Consensus 521 ~p~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 599 (791)
+...+ ...+++|++|++.+|.+..... ........+++|+.|++++|.+.....-.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~-------~~la~a~~~~~L~~LdLs~n~L~d~G~~~---------------- 298 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVV-------EMFLESDILPQLETMDISAGVLTDEGARL---------------- 298 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHH-------HHHHHCSSGGGCSEEECCSSCCBHHHHHH----------------
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHH-------HHHHhCccCCCCCEEECCCCCCChHHHHH----------------
Confidence 11111 1357899999998888654100 11111235788999999888765422100
Q ss_pred CCCCCcccccccccccccceEEecccCCCC
Q 038105 600 FDREESIDVADLANLEQLNTLYFRSCGWSG 629 (791)
Q Consensus 600 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 629 (791)
....+.++++|+.|+|++|.+..
T Consensus 299 -------L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 299 -------LLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp -------HHTTHHHHTTCSEEECCSBBCCH
T ss_pred -------HHhhcccCCcceEEECCCCcCCH
Confidence 01234567889999998886554
No 186
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.38 E-value=8.6e-06 Score=86.67 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=102.3
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..++|.+..++++.+.+.. ....+.|.|+|+.|+|||++|++++... .. .++.++++.-.+
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999988732 1134789999999999999999998875 22 233444332211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc-------------ccccccCCCCCC-CCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD-------------LKKVGVPLPSRS-NSP 182 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~-~~~ 182 (791)
.. .... ......+.... ...+.+|+||+++.... ...+...+.... ...
T Consensus 187 ~~---------------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 KY---------------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc---------------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 0001 11222222222 34568999999975410 001111111000 012
Q ss_pred CCcEEEEEcCcHHHHhh--c-cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHHHHH
Q 038105 183 KNSAVVFTTRFVDVCGR--M-EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALITIG 257 (791)
Q Consensus 183 ~~~~iivTtR~~~~~~~--~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 257 (791)
....||.||........ . .....+.+...+.++..+++...+....... ..+....+++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 33455656654322110 1 2234688999999999999998876543221 25567889999988654 554444
No 187
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=1.8e-06 Score=90.30 Aligned_cols=176 Identities=15% Similarity=0.208 Sum_probs=103.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCCccCHHHHHHHHHHHh
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSKDLQLEKIQETIGKKI 127 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l 127 (791)
..++|.+..++.+...+..+ +.+.+.++|+.|+||||+|+.++..+. ...+. .+..++.+...+...+.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir~------ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVRN------ 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHHT------
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHHH------
Confidence 44789999999999988876 444499999999999999999998862 11111 122233222212211111
Q ss_pred CCCCCCcccccHHHHHHHHHHH---hCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcHH-HHh-hc
Q 038105 128 GLYTDSWKDKRLEEKAQDIFKT---LSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFVD-VCG-RM 200 (791)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~---l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~~-~~~-~~ 200 (791)
.+..+.+. ..+.+-++|+|+++... ..+.+...+.. .....++|++|.... +.. ..
T Consensus 96 --------------~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~---~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 96 --------------QIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER---YTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp --------------HHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH---TTTTEEEEEEESCGGGSCHHHH
T ss_pred --------------HHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc---CCCCeEEEEEecCccccchhHH
Confidence 11111110 12346789999997542 22223222322 233566777665432 111 11
Q ss_pred cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHH
Q 038105 201 EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLAL 253 (791)
Q Consensus 201 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 253 (791)
.....+++.+++.++..+.+.+.+.......+ ++..+.+++.++|.+.-+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 22347899999999999998887643332222 556788899999988643
No 188
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.37 E-value=1.5e-06 Score=89.59 Aligned_cols=153 Identities=13% Similarity=0.174 Sum_probs=88.5
Q ss_pred cccchHHHHHHHHHHhcc--------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC--EEEEEEeCCc
Q 038105 50 TVVGLQSQLEQVWRCLVQ--------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD--YVIWVVVSKD 113 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~--------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~--~~~wv~~~~~ 113 (791)
.++|.+...+++.+.+.. ......+.|+|+.|+|||++|+.+++.+... .... .++.++.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~- 109 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVTRDD- 109 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEECGGG-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEcHHH-
Confidence 589999999888876541 2245679999999999999999988776211 1111 233333211
Q ss_pred cCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCc-----------ccccccccCCCCCCCCC
Q 038105 114 LQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER-----------VDLKKVGVPLPSRSNSP 182 (791)
Q Consensus 114 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~ 182 (791)
+. . .+. +........+.... ++-+|+||+++.. .....+...+.. ..
T Consensus 110 -------------l~--~-~~~-g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~---~~ 167 (309)
T 3syl_A 110 -------------LV--G-QYI-GHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN---NR 167 (309)
T ss_dssp -------------TC--C-SST-TCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH---CT
T ss_pred -------------hh--h-hcc-cccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc---CC
Confidence 10 0 001 11111222222222 2359999999743 112223223332 34
Q ss_pred CCcEEEEEcCcHHH----------HhhccccceEEeccCChHHHHHHHHHHhCccc
Q 038105 183 KNSAVVFTTRFVDV----------CGRMEDRRMFKVACLSDEDAWELFREKVGEET 228 (791)
Q Consensus 183 ~~~~iivTtR~~~~----------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 228 (791)
.+..+|.||..... ... ....+.+++++.++..+++..++....
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~~~ 221 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDDQN 221 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHHcC
Confidence 45677777754321 111 236799999999999999988875433
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.35 E-value=8.6e-06 Score=87.95 Aligned_cols=184 Identities=15% Similarity=0.117 Sum_probs=104.0
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+...+.+.+.+.. ....+.|.|+|+.|+|||++|++++... .. ...+.++++.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---~~--~~~~~v~~~~l---- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---NN--STFFSISSSDL---- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---CS--SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---CC--CCEEEEeHHHH----
Confidence 4589999999999887631 1235789999999999999999999876 11 12233333211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc-------------ccccccCCCCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPKN 184 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~~ 184 (791)
... ..+. ........... .-...+.+|+||+++.... ...+...+........+
T Consensus 205 --~~~---~~g~-----~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 205 --VSK---WLGE-----SEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred --Hhh---hcch-----HHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 100 0111 11112222211 1234678999999975411 11122222221112345
Q ss_pred cEEEEEcCcHHHHhh---ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHHH
Q 038105 185 SAVVFTTRFVDVCGR---MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITIG 257 (791)
Q Consensus 185 ~~iivTtR~~~~~~~---~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 257 (791)
..||.||..+..... ......+.+...+.++..+++..++....... .......|++.+.|. +..|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666667754322110 12335788888899999999988876543211 145678899999984 54555554
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.34 E-value=1.5e-05 Score=81.40 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=103.9
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..++|.+..++.+.+.+.. ....+.+.|+|+.|+|||++|++++... .. ..+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999999988732 1135789999999999999999999876 22 233444432110
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcccc---------c----ccccC---CCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVDL---------K----KVGVP---LPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~---------~----~~~~~---l~~~~~ 180 (791)
. ...........+.... ...+.+|+||+++....- . .+... ++.. .
T Consensus 93 ---------------~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~ 155 (297)
T 3b9p_A 93 ---------------K-YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN-P 155 (297)
T ss_dssp ---------------S-SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ---------------c-ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc-C
Confidence 0 0111222233333222 356789999999754210 0 01100 1110 0
Q ss_pred CCCCcEEEEEcCcHH-----HHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch-HHH
Q 038105 181 SPKNSAVVFTTRFVD-----VCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL-ALI 254 (791)
Q Consensus 181 ~~~~~~iivTtR~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~ 254 (791)
.+.+..||.||..+. +.. .....+.+...+.++..+++...+...... -..+....+++.+.|.+- ++.
T Consensus 156 ~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 156 DGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP---LDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ---CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCC---SCHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHH
Confidence 123455666776432 222 223567788888888888888876543311 124567889999999875 554
Q ss_pred HHH
Q 038105 255 TIG 257 (791)
Q Consensus 255 ~~~ 257 (791)
.+.
T Consensus 231 ~l~ 233 (297)
T 3b9p_A 231 ALA 233 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 191
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.30 E-value=2.5e-07 Score=99.16 Aligned_cols=126 Identities=13% Similarity=0.183 Sum_probs=60.2
Q ss_pred CccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccc-cccccCccc
Q 038105 407 DVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQL-PMGISKLVS 483 (791)
Q Consensus 407 ~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~~~~l~~ 483 (791)
++.++.+|+.+.+..+ +..+. .+.+|.+|+.+.+..+ +..+....|.++..|+.+.+..+ +..+ ...|..+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeecccc
Confidence 3445566666666432 33333 3455666666666543 44555555666666665555432 1111 112222222
Q ss_pred ccEEecCCCcccccc-hhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeec
Q 038105 484 LQLLDISNTEVEELP-EELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFAT 540 (791)
Q Consensus 484 L~~L~L~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 540 (791)
+...... .+..+. ..+.++.+|+.+.+..+. ..++...+.++.+|+.+.+..+
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC
Confidence 2111111 111121 235566666666665442 4455555666666666666543
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.4e-05 Score=83.11 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred cccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+..+++|.+.+.- -..++-|.++|++|+|||.+|+++++.. ... .+.++.+.-.
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~--- 219 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELV--- 219 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGS---
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhh---
Confidence 468888888888876531 1346789999999999999999999987 322 2334432211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
.. ..+..+..++.++... ...+++|+||+++.... +..+...+... .
T Consensus 220 --------------sk-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-~ 283 (405)
T 4b4t_J 220 --------------QK-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF-E 283 (405)
T ss_dssp --------------CS-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT-T
T ss_pred --------------cc-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc-C
Confidence 00 1122233344444443 45789999999974310 01111111111 1
Q ss_pred CCCCcEEEEEcCcH-----HHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFV-----DVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~-----~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..||.||-.+ .+.+....+..+.+..-+.++..++|+.+........+.+ ...+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 23344555566533 3333334567899999999999999988876544332222 566778888754
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.26 E-value=2.6e-06 Score=80.36 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=41.6
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
-..++||+.+++++.+.+... ..+.+.|+|+.|+|||++|+++++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR-TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC-CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999875 56778999999999999999999876
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.21 E-value=7.4e-06 Score=83.72 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=100.7
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
.+++|.+..++++.+.+.. -...+.|.|+|+.|+|||++|++++... .. ..+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE------h
Confidence 4589999988888887642 1245789999999999999999999876 22 222222 2
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
..+.... .+.. .... ...+.......+.+++||+++.... ...+...+....
T Consensus 83 ~~l~~~~---~g~~-----~~~~---~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~- 150 (301)
T 3cf0_A 83 PELLTMW---FGES-----EANV---REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 150 (301)
T ss_dssp HHHHHHH---HTTC-----TTHH---HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-
T ss_pred HHHHhhh---cCch-----HHHH---HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-
Confidence 2222221 1211 1111 1222222235679999999974210 111111111100
Q ss_pred CCCCcEEEEEcCcHHHHhh--c---cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchH
Q 038105 181 SPKNSAVVFTTRFVDVCGR--M---EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLA 252 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~~--~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 252 (791)
...+..||.||..+..... . .....+.+...+.++..+++..++.......... ...++..+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 2335567777764432211 1 2345789999999999999988876544222222 34566677887643
No 195
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=3.3e-05 Score=76.94 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=97.7
Q ss_pred CcccchHHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~---~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+...+++.+.+. .. ...+.+.|+|+.|+||||+|+.+++.. ... .+.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVP---FFTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCC---EEEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCC---EEEEeHHHHHH--
Confidence 568999988777766542 10 124568999999999999999999876 222 23343322100
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----------------ccccccCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----------------LKKVGVPLPSRSNS 181 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~~ 181 (791)
.. ...........+.......+.++++|+++.... ...+...+.... .
T Consensus 84 --------~~-------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~ 147 (257)
T 1lv7_A 84 --------MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-G 147 (257)
T ss_dssp --------SC-------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-S
T ss_pred --------Hh-------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-c
Confidence 00 011122222223333345678999999953211 001111111100 2
Q ss_pred CCCcEEEEEcCcHHHHh-h----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCC-CchHHHH
Q 038105 182 PKNSAVVFTTRFVDVCG-R----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDG-LPLALIT 255 (791)
Q Consensus 182 ~~~~~iivTtR~~~~~~-~----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~ 255 (791)
..+..||.||..+.... . ......+.+...+.++-.+++..+........+. ....++..+.| .+.-|..
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHHH
Confidence 23456666776443211 1 1224567888888888888888876543322221 23456777778 6654443
Q ss_pred H
Q 038105 256 I 256 (791)
Q Consensus 256 ~ 256 (791)
+
T Consensus 224 l 224 (257)
T 1lv7_A 224 L 224 (257)
T ss_dssp H
T ss_pred H
Confidence 3
No 196
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=2e-05 Score=83.39 Aligned_cols=172 Identities=15% Similarity=0.187 Sum_probs=100.5
Q ss_pred cccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+..+++|.+.+.- -..++-|.++|++|+|||.+|+++++.. ... .+.++.+.-.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~--- 252 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIV--- 252 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTC---
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhc---
Confidence 467888888888776531 1346889999999999999999999987 222 2334432211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
.. ..+.....+..++... ...+++|+||+++.... +..+...+....
T Consensus 253 --------------sk-~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~- 316 (437)
T 4b4t_L 253 --------------DK-YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD- 316 (437)
T ss_dssp --------------CS-SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-
T ss_pred --------------cc-cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-
Confidence 00 1112223333333333 45789999999974310 011111111111
Q ss_pred CCCCcEEEEEcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..||.||-.+...+ ....+..+.+..-+.++..++|..+..........+ ...+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 233456666775433321 222455788888888888999988775543222222 456777887754
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.14 E-value=8.2e-06 Score=88.77 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=82.8
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC----CCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD----FDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..+|||+.+++++.+.+... ..+.+.|+|++|+|||++|+.++......... -..++.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------c
Confidence 35899999999999999875 45667899999999999999999886321100 1122333332 0
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHH---h---
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC---G--- 198 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~---~--- 198 (791)
...+ . ........... .-..++.++++|. ..+....+...+. ....++|.+|...... .
T Consensus 247 ~~~g----~-~e~~~~~~~~~---~~~~~~~iLfiD~--~~~a~~~L~~~L~-----~g~v~vI~at~~~e~~~~~~~~~ 311 (468)
T 3pxg_A 247 KYRG----E-FEDRLKKVMDE---IRQAGNIILFIDA--AIDASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDA 311 (468)
T ss_dssp -----------CTTHHHHHHH---HHTCCCCEEEECC----------CCCTT-----SSSCEEEEECCTTTTHHHHTTCS
T ss_pred cccc----h-HHHHHHHHHHH---HHhcCCeEEEEeC--chhHHHHHHHhhc-----CCCEEEEecCCHHHHHHHhhcCH
Confidence 0000 0 01112222222 2235678999992 1122222333332 2235566655433310 0
Q ss_pred -hccccceEEeccCChHHHHHHHHHHhCc
Q 038105 199 -RMEDRRMFKVACLSDEDAWELFREKVGE 226 (791)
Q Consensus 199 -~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 226 (791)
......++.+++.+.++..+++......
T Consensus 312 al~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 1112346999999999999999887644
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.1e-05 Score=81.95 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCC
Q 038105 53 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK-DLQLEKIQETIGKKIGLYT 131 (791)
Q Consensus 53 GR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 131 (791)
|-++.++.+...+..+. .+...++|+.|+||||+|+.+++...........+.+++.+. ..+++++. ++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir-~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIR-TIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHH-HHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHH-HHHHHHhhcc
Confidence 34556777888888774 789999999999999999999875311111122345555432 22332222 2222222110
Q ss_pred CCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc--cccccccCCCCCCCCCCCcEEEEEcCcH-HHHhhccccceEEe
Q 038105 132 DSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKVGVPLPSRSNSPKNSAVVFTTRFV-DVCGRMEDRRMFKV 208 (791)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~~~~~iivTtR~~-~~~~~~~~~~~~~l 208 (791)
..+++-++|+|+++... ..+.+...+.. .+..+.+|++|.++ .+....... .+++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhC---CCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 12346789999998653 23444444444 44567777766543 333333333 8999
Q ss_pred ccCChHHHHHHHHHHh
Q 038105 209 ACLSDEDAWELFREKV 224 (791)
Q Consensus 209 ~~l~~~e~~~l~~~~~ 224 (791)
.++++++..+.+.+.+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998886
No 199
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=4e-05 Score=80.75 Aligned_cols=172 Identities=18% Similarity=0.183 Sum_probs=101.2
Q ss_pred cccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+...++|.+.+.- + ...+-|.++|++|+|||.+|++++... ... .+.++.+.-.
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~--- 280 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELV--- 280 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC---
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhh---
Confidence 478999988888876421 1 357889999999999999999999987 222 2333332210
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
.. ..+..+..++.++... ...+++|+||+++.... +..+...+... .
T Consensus 281 --------------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-~ 344 (467)
T 4b4t_H 281 --------------QK-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF-D 344 (467)
T ss_dssp --------------CC-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS-C
T ss_pred --------------cc-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc-C
Confidence 00 1122223333333333 45789999999974310 00011111110 0
Q ss_pred CCCCcEEEEEcCcH-----HHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFV-----DVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~-----~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..||.||-.+ .+.+..+.+..+.+..-+.++-.++|+.++........-+ .+.|++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 23344455566433 2222224566889999999999999988876544332222 456778888763
No 200
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=2e-05 Score=83.24 Aligned_cols=171 Identities=19% Similarity=0.165 Sum_probs=99.4
Q ss_pred cccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+...++|.+.+.- -..++-|.++||+|+|||.+|++++... ... .+.++.+.-.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~--- 252 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLV--- 252 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGC---
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhh---
Confidence 478999988888876431 1346889999999999999999999987 222 2333332210
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCc--------cc--------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWER--------VD--------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--------~~--------~~~~~~~l~~~~~ 180 (791)
.. ..+.....++.++... ...+++|+||+++.. .. +..+...+....
T Consensus 253 --------------~~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~- 316 (434)
T 4b4t_M 253 --------------QM-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS- 316 (434)
T ss_dssp --------------SS-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-
T ss_pred --------------hc-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-
Confidence 00 1122233344444433 346899999999632 00 011111122211
Q ss_pred CCCCcEEEEEcCcHHHH-----hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 181 SPKNSAVVFTTRFVDVC-----GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
...+..||.||..+... +....+..+.+..-+.++..++|+.+........+-+ .+.+++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 23344555566543332 2223456789988899999999987765443222222 45677788775
No 201
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.04 E-value=4.7e-06 Score=83.86 Aligned_cols=176 Identities=15% Similarity=0.071 Sum_probs=91.8
Q ss_pred CcccchHHHHHHHHHHhcc-----------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..++|.+...+++.+.+.. ....+.+.|+|+.|+|||++|+++++.. ...|- .++++.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFF---SMGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCC---CCCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEE---EechHHHH---
Confidence 5689988877777776541 1123458899999999999999999876 22221 11111110
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc-----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD-----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~~ 180 (791)
....... ........+ ......+.+|+||+++.... ...+...+.....
T Consensus 82 -------~~~~~~~----~~~~~~~~~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVGLG----ASRVRDLFE---TAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSSSC----SSSSSTTHH---HHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------HhhcchH----HHHHHHHHH---HHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 0000000 000111111 11123568999999965421 1112222211100
Q ss_pred CCCCcEEEEEcCcHHH-----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCch
Q 038105 181 SPKNSAVVFTTRFVDV-----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPL 251 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 251 (791)
......||.||..+.. .........+.+...+.++..+++...+.......... ...+++.+.|.|-
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 1223456667764432 11112335688899999999999988775433222211 2335556666653
No 202
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=3.5e-05 Score=81.42 Aligned_cols=172 Identities=17% Similarity=0.186 Sum_probs=95.2
Q ss_pred cccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+...++|.+.+.- -..++-|.++|++|+|||.+|+++++.. ... .+.++.+.-.
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~--- 243 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFV--- 243 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTC---
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhh---
Confidence 478899988888876531 1356789999999999999999999987 222 2334432211
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcc----------c------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERV----------D------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~------~~~~~~~l~~~~~ 180 (791)
.. ..+.....++.++... ...++++++|+++... + +..+...+... .
T Consensus 244 --------------~~-~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~-~ 307 (428)
T 4b4t_K 244 --------------HK-YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF-D 307 (428)
T ss_dssp --------------CS-SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS-C
T ss_pred --------------cc-ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC-C
Confidence 00 1122223333343333 4568999999996320 0 01111111110 0
Q ss_pred CCCCcEEEEEcCcH-----HHHhhccccceEEeccCC-hHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFV-----DVCGRMEDRRMFKVACLS-DEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~-----~~~~~~~~~~~~~l~~l~-~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..||.||-.+ .+.+....+..+++..+. .++-.++|..+........+.+ ...+++.+.|.-
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 23345566666533 223222344567886664 4555666766664433222222 456777787753
No 203
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=6.8e-06 Score=85.88 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=32.8
Q ss_pred cCCCCceeeccCcccccccchhHh--hcCcCCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEEEEeechh
Q 038105 503 ALVNLKCLNLDWTDVLVEVPQQLL--SNFSRLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 503 ~l~~L~~L~l~~~~~~~~~p~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
.+++|++|++.+|.+....+..+. ..+++|++|+++.|.++... ...++..+.++++|+.|+++.|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G------~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG------ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH------HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH------HHHHHhhcccCCcceEEECCCCcCC
Confidence 345666666655554322222211 13556666666665544310 0112333344566666666666543
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.5e-05 Score=80.35 Aligned_cols=172 Identities=15% Similarity=0.154 Sum_probs=98.9
Q ss_pred cccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+...++|.+.+.- -...+-|.++|++|+|||.+|++++... ... .+.++.+.-.
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~--- 253 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELI--- 253 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGC---
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhh---
Confidence 367888888888776531 1346889999999999999999999987 222 2233322110
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
.. ..+..+..++.++... ...+++|+||+++.... +..+...+... .
T Consensus 254 --------------sk-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-~ 317 (437)
T 4b4t_I 254 --------------QK-YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF-D 317 (437)
T ss_dssp --------------CS-SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-C
T ss_pred --------------hc-cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc-C
Confidence 00 1122233344444433 45689999999974310 00111111110 0
Q ss_pred CCCCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..||.||-.+...+. ...+..+.+..-+.++..++|..+........+-+ .+.+++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2334455656654333221 12345688888888999999988876544332222 456777887753
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.01 E-value=1.1e-05 Score=95.00 Aligned_cols=154 Identities=16% Similarity=0.211 Sum_probs=85.9
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT----DFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..+|||+.+++++.+.+... ..+.+.|+|++|+|||++|+.+++....... .-..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------------
T ss_pred cccCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---------
Confidence 44899999999999999875 4556789999999999999999987622110 112345554322100
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC--CceEEEEEcCccCccc-------cc---ccccCCCCCCCCCCCcEEEEEcC
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS--KKKFALLLDDLWERVD-------LK---KVGVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~-------~~---~~~~~l~~~~~~~~~~~iivTtR 192 (791)
... ..+........+...+. +++.+|+||+++.... .+ .+...+.. .+..+|.+|.
T Consensus 240 ------g~~-~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-----~~i~~I~at~ 307 (854)
T 1qvr_A 240 ------GAK-YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-----GELRLIGATT 307 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-----TCCCEEEEEC
T ss_pred ------cCc-cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-----CCeEEEEecC
Confidence 000 11223333344444332 4689999999975421 11 11112211 2344555554
Q ss_pred cHHHH------hhccccceEEeccCChHHHHHHHHHHh
Q 038105 193 FVDVC------GRMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 193 ~~~~~------~~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
..... ........+.+++++.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 33221 111223468999999999999997654
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.01 E-value=4.1e-05 Score=83.12 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=103.7
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
..++|.+..++++.+.+.. ....+.|.|+|++|+|||++|+++++.. .. ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch-----
Confidence 3589999999999888752 1345679999999999999999998876 22 23444431
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc-------------ccccccCCCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~ 183 (791)
++...+ ...........+.....+.+.+|+||+++.... ...+...+.... ...
T Consensus 273 -----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-~~~ 339 (489)
T 3hu3_A 273 -----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (489)
T ss_dssp -----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-TTS
T ss_pred -----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-cCC
Confidence 111111 111112223333333456688999999953211 111111111100 233
Q ss_pred CcEEEEEcCcHHH-----HhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC-chHHHHH
Q 038105 184 NSAVVFTTRFVDV-----CGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL-PLALITI 256 (791)
Q Consensus 184 ~~~iivTtR~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 256 (791)
+.+||.||..+.. .........+.+...+.++..+++..++.......... ..+++..+.|. +..+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 4566666664422 11123344789999999999999998876544332222 35566677775 4444443
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=4.4e-06 Score=78.57 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=67.8
Q ss_pred hhccCCcccEEeecCc-cccc----cccccccCcccccEEecCCCccc-----ccchhhhcCCCCceeeccCcccccc--
Q 038105 453 FFQSMPCLTVLKMSDI-RMLQ----QLPMGISKLVSLQLLDISNTEVE-----ELPEELKALVNLKCLNLDWTDVLVE-- 520 (791)
Q Consensus 453 ~~~~l~~L~~L~l~~~-~~~~----~lp~~~~~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-- 520 (791)
.+...+.|++|+|++| .... .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666666666665 3222 12333444566677777766665 2344455566777777777765322
Q ss_pred --cchhHhhcCcCCCeeee--eecCccccccccccchhchHHHhcCCCCCcEEEEEeechhh
Q 038105 521 --VPQQLLSNFSRLRVLRM--FATGIRSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFEA 578 (791)
Q Consensus 521 --~p~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 578 (791)
+... +...++|++|++ ++|.+... ....+...+...++|+.|++++|.+..
T Consensus 111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~~------g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEA-LQSNTSLIELRIDNQSQPLGNN------VEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHG-GGGCSSCCEEECCCCSSCCCHH------HHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHH-HHhCCCceEEEecCCCCCCCHH------HHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2222 455667777777 66665542 112345566666778888887777643
No 208
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.99 E-value=4.2e-05 Score=78.69 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=40.0
Q ss_pred CCcccchHHHHHHHHHHhcc-------------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ-------------EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~-------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|++..++.+...+.. ....+.+.|+|+.|+|||++|+.+++..
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999988754 1235678899999999999999999887
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=2e-06 Score=85.04 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=50.5
Q ss_pred ccCCcccEEeecCccccc--cccccccCcccccEEecCCCcccccchhhhcCC--CCceeeccCcccccccch------h
Q 038105 455 QSMPCLTVLKMSDIRMLQ--QLPMGISKLVSLQLLDISNTEVEELPEELKALV--NLKCLNLDWTDVLVEVPQ------Q 524 (791)
Q Consensus 455 ~~l~~L~~L~l~~~~~~~--~lp~~~~~l~~L~~L~L~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~~p~------~ 524 (791)
.++++|+.|+|++|.... .+|..++.+++|++|+|++|.++.+ ..+..+. +|+.|++++|.+.+.+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 457777777777773322 3344556677777777777777655 2334444 777777777776555541 2
Q ss_pred HhhcCcCCCeeee
Q 038105 525 LLSNFSRLRVLRM 537 (791)
Q Consensus 525 ~~~~l~~L~~L~l 537 (791)
++..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3556666666653
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.98 E-value=4.8e-05 Score=88.63 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=91.6
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC---CCEEEE-EEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTD---FDYVIW-VVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~---f~~~~w-v~~~~~~~~~~~~~~i~ 124 (791)
..++||+.+++++.+.|... ....+.|+|+.|+|||++|+.++..+....-. ....+| ++.+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----------- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----------- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----------
Confidence 45899999999999999876 55677899999999999999998876211100 122222 221110
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCcc--------cc---cccccCCCCCCCCCCCcEEEEEcC
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERV--------DL---KKVGVPLPSRSNSPKNSAVVFTTR 192 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~--------~~---~~~~~~l~~~~~~~~~~~iivTtR 192 (791)
. .... ..+...+..+.+.+.+. .++.+|+||+++... .. ..+...+. ..+.++|.+|.
T Consensus 254 --~--~~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-----~~~~~~I~at~ 323 (758)
T 1r6b_X 254 --L--AGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-----SGKIRVIGSTT 323 (758)
T ss_dssp -----CCCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-----SCCCEEEEEEC
T ss_pred --h--cccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-----CCCeEEEEEeC
Confidence 0 0000 12334444555555554 357899999997541 11 11222222 23456666665
Q ss_pred cHHHHhh-------ccccceEEeccCChHHHHHHHHHHh
Q 038105 193 FVDVCGR-------MEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 193 ~~~~~~~-------~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
....... ......+.+.+.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432111 1122368999999999999987765
No 211
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.94 E-value=8.8e-06 Score=73.01 Aligned_cols=46 Identities=24% Similarity=0.253 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 50 TVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++|++..++++.+.+.. ......|.|+|+.|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999988754 1234568899999999999999998875
No 212
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=4.6e-05 Score=81.33 Aligned_cols=134 Identities=13% Similarity=0.163 Sum_probs=87.1
Q ss_pred CcccCC-CCccCccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc
Q 038105 400 GLTEAP-ADVRGWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM 476 (791)
Q Consensus 400 ~~~~~~-~~~~~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 476 (791)
.+..+. ..+.++.+|+.+.+..+ +..+. .+..+..|+.+.+..+ +..+....|.++..+..........+ ...
T Consensus 81 ~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i--~~~ 156 (394)
T 4fs7_A 81 TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVI--GDE 156 (394)
T ss_dssp TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEE--CTT
T ss_pred CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCcccccc--chh
Confidence 344443 34677889999998754 44333 4677888888776654 45555556777665554444333222 234
Q ss_pred cccCcccccEEecCCCcccccch-hhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeec
Q 038105 477 GISKLVSLQLLDISNTEVEELPE-ELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFAT 540 (791)
Q Consensus 477 ~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 540 (791)
.|..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ ...++...+.++..|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 5778888988888765 344544 4778888888888766 36666666788888888877654
No 213
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.92 E-value=0.00012 Score=76.02 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=95.1
Q ss_pred CcccchHHHHHHHHHHhcc----CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ----EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~----~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..++|.+..++.+...+.. +.....+.|+|+.|+||||||+.++... ...+. ..+......
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~sg~~~~~--------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTSGPVLVK--------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEETTTCCS---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEechHhcC---------
Confidence 4578998888888777653 2244679999999999999999999986 22211 111111100
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcc--cccccccCCCCCCC------C---------CCCcEE
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERV--DLKKVGVPLPSRSN------S---------PKNSAV 187 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~------~---------~~~~~i 187 (791)
..+. ..+...+. ++-++++|+++... ..+.+...+..... . -....+
T Consensus 90 --------------~~~l-~~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 --------------QGDM-AAILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp --------------HHHH-HHHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred --------------HHHH-HHHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 1111 11112222 23467778886432 11111110000000 0 011223
Q ss_pred EE-EcCcHHHHhhc--cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 188 VF-TTRFVDVCGRM--EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 188 iv-TtR~~~~~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+- |++...+.... .....+.+++.+.++..+++.+.+...... ...+.+..|++.+.|.|..+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~---~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE---IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHhcCCChHHHHHH
Confidence 32 44432221111 122358899999999999999887543322 22567899999999999754433
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=2.3e-05 Score=83.64 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCCCCCccEEEecCCC---CcccchhhhccCCcccEEeecCcccccccc-ccccCcccccEEecCCCcccccch-hhhcC
Q 038105 430 VPTCPHLLTLFLNDNE---LTTITDDFFQSMPCLTVLKMSDIRMLQQLP-MGISKLVSLQLLDISNTEVEELPE-ELKAL 504 (791)
Q Consensus 430 ~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~lp~-~~~~l 504 (791)
+.+|.+|+.+.+..+. +..+....|..+..|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++. .+..+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecccceecc
Confidence 4455556655555442 44444445555555555554432 22222 23455555655555432 222322 24555
Q ss_pred CCCceeeccCcccccccchhHhhcCcCCCeeeee
Q 038105 505 VNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMF 538 (791)
Q Consensus 505 ~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~ 538 (791)
.+|+.+.+..+ ...+....+. ..+|+.+.+.
T Consensus 160 ~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip 190 (394)
T 4gt6_A 160 YSLHTVTLPDS--VTAIEERAFT-GTALTQIHIP 190 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTT-TCCCSEEEEC
T ss_pred cccccccccce--eeEecccccc-ccceeEEEEC
Confidence 55665555543 2344433332 2345555543
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=0.00011 Score=78.93 Aligned_cols=174 Identities=13% Similarity=0.101 Sum_probs=98.2
Q ss_pred CcccchHHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~---~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+..++++.+.+. .. ...+-|.|+|+.|+|||+||++++... ... .+.++++.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~---f~~is~~~~~~-- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVP---FFHISGSDFVE-- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCC---EEEEEGGGTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCC---eeeCCHHHHHH--
Confidence 458999987777776543 11 123568999999999999999999876 222 23344322111
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc----------------ccccccCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD----------------LKKVGVPLPSRSNS 181 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~~ 181 (791)
. +...........+.......+.+|+||+++.... +..+...+.... .
T Consensus 88 --------~-------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-~ 151 (476)
T 2ce7_A 88 --------L-------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-S 151 (476)
T ss_dssp --------C-------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-G
T ss_pred --------H-------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-C
Confidence 0 0011112222333333446789999999965311 111111111100 1
Q ss_pred CCCcEEEEEcCcHHHHhh--c---cccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 182 PKNSAVVFTTRFVDVCGR--M---EDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 182 ~~~~~iivTtR~~~~~~~--~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
..+..||.||..+...+. . .....+.++..+.++-.+++..++.......... ...++..+.|+.
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 235566667765543221 1 2334788888888888889888776543222211 445778888877
No 216
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=9.9e-06 Score=74.00 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=49.2
Q ss_pred cccceEEecccCCCCceeecccccccccccccccCCCCEEEEecCCCccc--ccchhcC----CCCceEEEccCcchhHH
Q 038105 615 EQLNTLYFRSCGWSGGLKIDYKDMVQKSRQPYVFRSLDKITVSSCRNLKH--LTFLVFA----PNLKSISVTHCDDMEEI 688 (791)
Q Consensus 615 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~L~~--l~~l~~~----~nL~~L~l~~c~~L~~l 688 (791)
.+|++|++++|.++.. . +..+ ..+++|++|.+.+|..+++ +..+... ++|++|+|++|+++++-
T Consensus 61 ~~L~~LDLs~~~Itd~---G------L~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI---G------FDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCCCCGG---G------GGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCCccHH---H------HHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3578888887765432 1 1111 2466677777777766654 3334432 35667777777666654
Q ss_pred hhcCCCCCCCCcccccCCcCcccceecccccccccc
Q 038105 689 ISAGEFDDIPEMTGIISSPFAKLQHLELWGLKSLKS 724 (791)
Q Consensus 689 ~~~~~~~~~~~l~~~~~~~~~~L~~L~l~~~~~l~~ 724 (791)
.. .....+++|++|.+.+|+.++.
T Consensus 131 Gl------------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GI------------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HH------------HHGGGCTTCCEEEEESCTTCCC
T ss_pred HH------------HHHhcCCCCCEEECCCCCCCCc
Confidence 33 1123456666666666665554
No 217
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.86 E-value=1e-05 Score=76.06 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=78.4
Q ss_pred CCCCCccEEEecCC-CCcccc----hhhhccCCcccEEeecCcccccc----ccccccCcccccEEecCCCcccc-----
Q 038105 431 PTCPHLLTLFLNDN-ELTTIT----DDFFQSMPCLTVLKMSDIRMLQQ----LPMGISKLVSLQLLDISNTEVEE----- 496 (791)
Q Consensus 431 ~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----lp~~~~~l~~L~~L~L~~~~l~~----- 496 (791)
...++|++|++++| .+.... ...+...++|++|+|++|..... +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45677888888888 665432 23356678889999988843322 33445556789999999998873
Q ss_pred cchhhhcCCCCceeec--cCcccccc----cchhHhhcCcCCCeeeeeecCccc
Q 038105 497 LPEELKALVNLKCLNL--DWTDVLVE----VPQQLLSNFSRLRVLRMFATGIRS 544 (791)
Q Consensus 497 lp~~~~~l~~L~~L~l--~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~ 544 (791)
+...+...++|+.|++ ++|.+... +... +...++|++|++++|.+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCCCh
Confidence 5566778888999999 77876332 2222 4667889999999887543
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.86 E-value=4.4e-05 Score=88.76 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=83.2
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC---C-EEEEEEeCCccCHHHHHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDF---D-YVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f---~-~~~wv~~~~~~~~~~~~~~i~ 124 (791)
..+|||+.+++++.+.+... ...-+.++|++|+|||++|+.+++.+......+ . .++.+++ .
T Consensus 180 d~iiG~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------g 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------G 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCccCchHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------c
Confidence 35899999999999999875 445688999999999999999998862211111 1 1222222 0
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHH---h---
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC---G--- 198 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~---~--- 198 (791)
... .+ . .......... .....++.+|++|.. .+....+...+. ....++|.||...... .
T Consensus 246 ~~~--~G-~-~e~~l~~~~~---~~~~~~~~iLfiD~~--~~~~~~L~~~l~-----~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 246 TKY--RG-E-FEDRLKKVMD---EIRQAGNIILFIDAA--IDASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp -----------CTTHHHHHH---HHHTCCCCEEEECC----------CCCTT-----SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ccc--cc-h-HHHHHHHHHH---HHHhcCCEEEEEcCc--hhHHHHHHHHHh-----cCCEEEEeCCChHHHHHHhhccH
Confidence 000 00 0 0111222222 223357789999922 122222222232 2245666666533310 0
Q ss_pred -hccccceEEeccCChHHHHHHHHHHhCc
Q 038105 199 -RMEDRRMFKVACLSDEDAWELFREKVGE 226 (791)
Q Consensus 199 -~~~~~~~~~l~~l~~~e~~~l~~~~~~~ 226 (791)
......++.++..+.++..+++......
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 0112256999999999999999876644
No 219
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=2.6e-05 Score=71.16 Aligned_cols=83 Identities=12% Similarity=0.110 Sum_probs=41.8
Q ss_pred CcccEEeecCccccccccccccCcccccEEecCCCc-ccc-cchhhhcC----CCCceeeccCcccccccchhHhhcCcC
Q 038105 458 PCLTVLKMSDIRMLQQLPMGISKLVSLQLLDISNTE-VEE-LPEELKAL----VNLKCLNLDWTDVLVEVPQQLLSNFSR 531 (791)
Q Consensus 458 ~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L~L~~~~-l~~-lp~~~~~l----~~L~~L~l~~~~~~~~~p~~~~~~l~~ 531 (791)
..|+.||+++|......-..+..+++|++|+|++|. ++. --..+..+ ++|++|++++|..++.-.-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777775333333345566666666666662 441 11223332 246666666654323222222445555
Q ss_pred CCeeeeeec
Q 038105 532 LRVLRMFAT 540 (791)
Q Consensus 532 L~~L~l~~~ 540 (791)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
No 220
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.70 E-value=0.00016 Score=82.36 Aligned_cols=172 Identities=16% Similarity=0.134 Sum_probs=98.6
Q ss_pred cccchHHHHHHHHHHhc----c-----C---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 50 TVVGLQSQLEQVWRCLV----Q-----E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~----~-----~---~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
++.|-+..+++|.+.+. . . ..++-|.++|++|+|||+||+++++.. ..+ .+.++++
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 36777777777776642 1 1 246789999999999999999999886 222 3344421
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHH-hCCceEEEEEcCccCccc-------------ccccccCCCCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT-LSKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSPK 183 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~~ 183 (791)
++... ..+..+..++.+.+. ....+.+|+||+++.... ...+...+.... ...
T Consensus 273 ----~l~sk--------~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-~~~ 339 (806)
T 3cf2_A 273 ----EIMSK--------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRA 339 (806)
T ss_dssp ----HHHSS--------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-GGG
T ss_pred ----Hhhcc--------cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-ccC
Confidence 11111 112223333444444 356789999999975310 011111111100 122
Q ss_pred CcEEEEEcCcHHHH-----hhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 184 NSAVVFTTRFVDVC-----GRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 184 ~~~iivTtR~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
+..||.||..+... +.......+++..-+.++-.+++..+........+.+ ...+++.+.|.-
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 34455566533221 1113456789999999999999988876544333222 556778888764
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.68 E-value=0.00012 Score=75.14 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=45.4
Q ss_pred CcccchHHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 49 PTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
..++|.+..++.+...+... .....+.|+|+.|+|||++|+.++.... ......+.++++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRIDMTEY 86 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEEGGGC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEeecccc
Confidence 45789999999988887642 1235899999999999999999998762 22223556665543
No 222
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.62 E-value=0.00024 Score=77.03 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHHHh---ccC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCL---VQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L---~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
-..++|.+..++++..++ ..+ ...+.+.++|++|+|||++|+++++..
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 367899999887665544 333 234679999999999999999999876
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=2.2e-05 Score=77.52 Aligned_cols=109 Identities=18% Similarity=0.181 Sum_probs=70.0
Q ss_pred ccCCcccE--EeecCcccccccccc----ccCcccccEEecCCCccccc---chhhhcCCCCceeeccCcccccccchhH
Q 038105 455 QSMPCLTV--LKMSDIRMLQQLPMG----ISKLVSLQLLDISNTEVEEL---PEELKALVNLKCLNLDWTDVLVEVPQQL 525 (791)
Q Consensus 455 ~~l~~L~~--L~l~~~~~~~~lp~~----~~~l~~L~~L~L~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~~ 525 (791)
...+.|.. ++++.| ....++.. ...+++|++|+|++|+++.+ |..++.+++|+.|+|++|.+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~-- 213 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERE-- 213 (267)
T ss_dssp GGCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGG--
T ss_pred CCCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchh--
Confidence 33444444 555555 33333322 24578999999999988854 45678899999999999987 44432
Q ss_pred hhcCc--CCCeeeeeecCccccccccccchhchHHHhcCCCCCcEEE
Q 038105 526 LSNFS--RLRVLRMFATGIRSVYGRFSSWYENVAEELLGLKHLEVLE 570 (791)
Q Consensus 526 ~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 570 (791)
+..+. +|++|++.+|.+..- ++.........+..+++|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~---~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDT---FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGG---CSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccc---cCcchhHHHHHHHHCcccCeEC
Confidence 44555 899999999986541 1111112234566777887775
No 224
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.58 E-value=0.00017 Score=72.21 Aligned_cols=62 Identities=13% Similarity=0.115 Sum_probs=41.7
Q ss_pred CcccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
..++|++..+.++.+.+.. ......|.|+|+.|+|||++|+.+++... ..-...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCCC
Confidence 3479999999888877654 12346788999999999999999998762 11123455666543
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.57 E-value=0.00013 Score=69.52 Aligned_cols=53 Identities=26% Similarity=0.194 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccCCC---ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 55 QSQLEQVWRCLVQEPA---AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 55 ~~~~~~l~~~L~~~~~---~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
...++.+.+++..... .+.+.|+|++|+|||+||+++++... .....++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~ 90 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEH
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEh
Confidence 3455555666654311 27899999999999999999998873 22334666654
No 226
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.57 E-value=0.00054 Score=69.34 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++.+.++|++|+|||+||+++++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999987
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=3.7e-05 Score=69.00 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=36.5
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
..++|.+.+.- ..+..- ....++|+|+.|+|||||++.++..... .. ..+++++..
T Consensus 18 ~f~~g~n~~~~---~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g-~~~~~~~~~ 73 (149)
T 2kjq_A 18 KFLGTENAELV---YVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE--AG-KNAAYIDAA 73 (149)
T ss_dssp CCCSCCTHHHH---HHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT--TT-CCEEEEETT
T ss_pred hcCcCccHHHH---HHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh--cC-CcEEEEcHH
Confidence 34456554433 333332 4478999999999999999999988732 12 236666654
No 228
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.52 E-value=0.002 Score=64.40 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=84.9
Q ss_pred CcccchHHHHHHHHHHhcc-----------C-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------E-PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------~-~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
.++.|-++..+++.+.+.. + .-.+-+.|+|+.|+||||||+.++... .. ..++++...-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~---~~---~~i~i~g~~l~~- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES---GL---NFISVKGPELLN- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEEETTTTCS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc---CC---CEEEEEcHHHHh-
Confidence 4578888888887765421 0 122349999999999999999999876 22 244554322110
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCcccc-------------cccccCCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVDL-------------KKVGVPLPSRSNSP 182 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~~-------------~~~~~~l~~~~~~~ 182 (791)
. ........+..+.+.. ...+.++++|+++..... ..+...+... ...
T Consensus 83 ----------------~-~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg-~~~ 144 (274)
T 2x8a_A 83 ----------------M-YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGL-EAR 144 (274)
T ss_dssp ----------------S-TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTC-CST
T ss_pred ----------------h-hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcc-ccc
Confidence 0 0111122233333332 346789999999743110 0000111110 012
Q ss_pred CCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhC
Q 038105 183 KNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVG 225 (791)
Q Consensus 183 ~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~ 225 (791)
....++.+|..+...+. ...+..+.+...+.++-.++++.+..
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 23445556665554322 13456788999999999999988764
No 229
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.48 E-value=0.00055 Score=67.84 Aligned_cols=173 Identities=16% Similarity=0.114 Sum_probs=91.9
Q ss_pred CcccchHHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 49 PTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~---~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
.+++|.+....++.+... .. .-.+-+.|+|+.|+||||||+.++... . ...+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~---~---~~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---C---CCEEEeeHH------
Confidence 457888876666655432 10 112349999999999999999999876 2 123333321
Q ss_pred HHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCccc----------------ccccccCCCCCCC
Q 038105 118 KIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERVD----------------LKKVGVPLPSRSN 180 (791)
Q Consensus 118 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~~ 180 (791)
++.... .......+..+.+... ..+.++++|+++.... ...+...+....
T Consensus 84 ----~~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~- 150 (254)
T 1ixz_A 84 ----DFVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE- 150 (254)
T ss_dssp ----HHHHSC--------TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-
T ss_pred ----HHHHHH--------hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-
Confidence 111110 0111222333444433 4678999999953210 111111121100
Q ss_pred CCCCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 181 SPKNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 181 ~~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
......++.||..+...+. ......+.+...+.++-.+++..++.......+. ....+++.+.|.-
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc----CHHHHHHHcCCCC
Confidence 1222344446665544321 1334578899999998888888776433222111 1345677777754
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.47 E-value=0.00022 Score=72.60 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=38.2
Q ss_pred CcccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|++..+.++.+.+.. ......|.|+|+.|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999999999888765 1234678899999999999999998865
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=0.0011 Score=66.65 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=92.8
Q ss_pred CCcccchHHHHHHHHHHhcc--C---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ--E---------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~--~---------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
-.+++|.+...+++.+.... . .-.+-+.|+|+.|+||||||+.++... . ...+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~---~---~~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---R---VPFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT---T---CCEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc---C---CCEEEecHH-----
Confidence 45689988777666654321 0 112349999999999999999999876 2 223343321
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSRS 179 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~ 179 (791)
. +.... .......+..+.+.. ...+.++|+|+++.... +..+...+....
T Consensus 108 -~----~~~~~--------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 108 -D----FVEMF--------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp -H----HHHST--------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred -H----HHHHH--------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 1 11110 001112222333332 34578999999953210 111111122100
Q ss_pred CCCCCcEEEEEcCcHHHHh-----hccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 180 NSPKNSAVVFTTRFVDVCG-----RMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 180 ~~~~~~~iivTtR~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
......++.||..+...+ .......+.+...+.++-.+++..++.......+. ....++..+.|..
T Consensus 175 -~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~----~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 -KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV----DLALLAKRTPGFV 245 (278)
T ss_dssp -TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCC
T ss_pred -CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc----CHHHHHHHcCCCC
Confidence 122233444665444322 22345678999999999999988776443222111 2445677777765
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.43 E-value=0.00078 Score=72.90 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=95.1
Q ss_pred CCcccchHHHHHHHHHHhc---cC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 48 EPTVVGLQSQLEQVWRCLV---QE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~---~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
-.+++|.+....++.+... .. .-.+-|.|+|+.|+|||+||++++... .. ..+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH-
Confidence 3568999887777766542 11 113459999999999999999999876 22 234444322110
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC-CceEEEEEcCccCccc----------------ccccccCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS-KKKFALLLDDLWERVD----------------LKKVGVPLPSRS 179 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~~ 179 (791)
. ........+..+.+... ..+.++++|+++.... +..+...+....
T Consensus 103 ------------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 ------------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 0 00111112222222222 3468999999964311 011111122110
Q ss_pred CCCCCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 180 NSPKNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 180 ~~~~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
...+..++.||..+...+. ......+.++..+.++-.+++..++.......+ .....++..+.|+.
T Consensus 166 -~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 -KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp -SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS----STTHHHHTTSCSCC
T ss_pred -cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHhcCCCC
Confidence 1233455556665544221 123457899999999999999877643322111 12455777777765
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.42 E-value=0.0013 Score=72.80 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=78.9
Q ss_pred cccchHHHHHHHHHHhc-----cCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 50 TVVGLQSQLEQVWRCLV-----QEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~-----~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
+++|-+...+.+.+.+. .......+.|+|++|+||||+|+.++... ...| ..+.++...+...+.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHHH
Confidence 47888887777765432 12245789999999999999999999876 2222 2223322222111111111
Q ss_pred HHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc------ccccccCCCCCCC------------CCCCcE
Q 038105 125 KKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD------LKKVGVPLPSRSN------------SPKNSA 186 (791)
Q Consensus 125 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~------------~~~~~~ 186 (791)
...+. ......+.+.......+ +++||+++.... ...+...+..... .-.+..
T Consensus 156 ~~ig~--------~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 156 TYVGA--------MPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ----------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHhcc--------CchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 11110 01111122222222344 888999975422 1222222211000 003456
Q ss_pred EEEEcCcHH-----HHhhccccceEEeccCChHHHHHHHHHHh
Q 038105 187 VVFTTRFVD-----VCGRMEDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 187 iivTtR~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
+|.||.... ...++ .++.+.+++.++-.+++.+++
T Consensus 227 iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 666665432 22222 468999999999988887765
No 234
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.00023 Score=66.44 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 54 LQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 54 R~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++..++.+.+++..- .....++|+|+.|+||||||+.++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 455556666555431 235789999999999999999999876
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.28 E-value=0.00046 Score=80.08 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=95.2
Q ss_pred CcccchHHHHHHHHHHhcc------------CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 49 PTVVGLQSQLEQVWRCLVQ------------EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
..++|.+..++++.+++.. -.....|.|+|++|+||||||+.++... ... .+.++...
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~---~i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCE---EEEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCc---EEEEEchH----
Confidence 3489999988888887742 1245689999999999999999999876 222 23444211
Q ss_pred HHHHHHHHHHhCCCCCCcccccHHHHHHHHH-HHhCCceEEEEEcCccCccc-------------ccccccCCCCCCCCC
Q 038105 117 EKIQETIGKKIGLYTDSWKDKRLEEKAQDIF-KTLSKKKFALLLDDLWERVD-------------LKKVGVPLPSRSNSP 182 (791)
Q Consensus 117 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~~ 182 (791)
+ .+. ...........+. ......+.++++|+++.... ...+...+.... ..
T Consensus 274 ------l---~~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~ 338 (806)
T 1ypw_A 274 ------I---MSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QR 338 (806)
T ss_dssp ------H---SSS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TT
T ss_pred ------h---hhh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cc
Confidence 1 000 1111222222222 22334678999999953311 011111111110 12
Q ss_pred CCcEEEEEcCcHHHHhh-----ccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCc
Q 038105 183 KNSAVVFTTRFVDVCGR-----MEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLP 250 (791)
Q Consensus 183 ~~~~iivTtR~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 250 (791)
.+..+|.||..+..... ......+.+...+.++..+++..++.......... ...++..+.|.-
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 34556666654322211 12234678888899999999988765443222222 344555666654
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.24 E-value=0.0015 Score=63.01 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCC----------CCcccccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYT----------DSWKDKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~ 139 (791)
...++.|+|++|+||||+|.+++. . .-..++|++.........+.. +.+..+... ........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 457999999999999999999987 2 124788998776545544443 333332210 00011112
Q ss_pred HHHHHHHHHHhCCceEEEEEcCccC
Q 038105 140 EEKAQDIFKTLSKKKFALLLDDLWE 164 (791)
Q Consensus 140 ~~~~~~l~~~l~~~~~LlVlDdv~~ 164 (791)
.+..+.+......++-++|+|.+..
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHH
Confidence 3344555555544578999999854
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.23 E-value=0.00019 Score=83.41 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=82.5
Q ss_pred CcccchHHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHH
Q 038105 49 PTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQ 120 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 120 (791)
..++|.+..++.+.+.+... .....+.++|+.|+|||++|+++++... ......+.++++......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 45899999998888887631 1223799999999999999999998862 222345566654321100
Q ss_pred HHHHHHhCCCCCCcccccHHHHHHHHHHHhCCceEEEEEcCccCccc--ccccccCCCC--------CCCCCCCcEEEEE
Q 038105 121 ETIGKKIGLYTDSWKDKRLEEKAQDIFKTLSKKKFALLLDDLWERVD--LKKVGVPLPS--------RSNSPKNSAVVFT 190 (791)
Q Consensus 121 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~--------~~~~~~~~~iivT 190 (791)
.. ........+.. ...-+|+||+++.... ...+...+.. ......+.+||.|
T Consensus 565 --------------~~-~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 --------------ST-SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp --------------CC-C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred --------------cc-ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 00 00111111111 2234899999975411 1111111100 0001235678888
Q ss_pred cCcH-----HH----Hhhc------cccceEEeccCChHHHHHHHHHHh
Q 038105 191 TRFV-----DV----CGRM------EDRRMFKVACLSDEDAWELFREKV 224 (791)
Q Consensus 191 tR~~-----~~----~~~~------~~~~~~~l~~l~~~e~~~l~~~~~ 224 (791)
|... .. ...+ ....++.+.+++.++..+++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 8621 00 0001 123478899999988888876654
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.20 E-value=0.0015 Score=67.19 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=58.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .+++++...+.. ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 457999999999999999999988762 222457899887766543 556666543221 233455555555
Q ss_pred HHHhC-CceEEEEEcCccC
Q 038105 147 FKTLS-KKKFALLLDDLWE 164 (791)
Q Consensus 147 ~~~l~-~~~~LlVlDdv~~ 164 (791)
....+ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 55443 4556899999843
No 239
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.16 E-value=0.00028 Score=65.38 Aligned_cols=115 Identities=22% Similarity=0.165 Sum_probs=65.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc---cCHHHHHHHHHHHhCCC----CCC--ccc-----
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD---LQLEKIQETIGKKIGLY----TDS--WKD----- 136 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~----~~~--~~~----- 136 (791)
...|.|++..|.||||.|-.++-+. .++...|+++.+-.. .+...++ +.+++. ... +..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA---~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARA---VGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHH---HHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHH
Confidence 3567777777799999999998876 344445777765442 2223333 333210 000 111
Q ss_pred --ccHHHHHHHHHHHhCCce-EEEEEcCccC-----cccccccccCCCCCCCCCCCcEEEEEcCcHH
Q 038105 137 --KRLEEKAQDIFKTLSKKK-FALLLDDLWE-----RVDLKKVGVPLPSRSNSPKNSAVVFTTRFVD 195 (791)
Q Consensus 137 --~~~~~~~~~l~~~l~~~~-~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~ 195 (791)
...........+.+.+.+ =|||||++-. ....+.+...+.. ......||+|+|...
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~---Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA---RPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT---SCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh---CcCCCEEEEECCCCc
Confidence 122334555566665544 5999999942 2333334333433 455678999999753
No 240
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.16 E-value=0.0087 Score=63.48 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=89.5
Q ss_pred CCccCccceeEEEcccCCCCC---CC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCcccccccc-cccc
Q 038105 406 ADVRGWEMVRRLSLMRNSIDN---LP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLP-MGIS 479 (791)
Q Consensus 406 ~~~~~~~~l~~l~l~~~~~~~---l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp-~~~~ 479 (791)
.++.++.+|+.+.+..+.... +. .+..|.+|+.+.+..+ +..+....|..+.+|+.+.+..+ ...++ ..+.
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~ 157 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFS 157 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeeccccee
Confidence 346678899999998765333 32 4567888888777654 56677777889999999999764 33333 4577
Q ss_pred CcccccEEecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeecC
Q 038105 480 KLVSLQLLDISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFATG 541 (791)
Q Consensus 480 ~l~~L~~L~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~~ 541 (791)
.+..|+.+.+..+ +..+....-...+|+.+.+..+. ..+....+.++.+|.........
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~--~~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKV--TRIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTC--CEECTTTTTTCTTCCEEEECCSS
T ss_pred cccccccccccce-eeEeccccccccceeEEEECCcc--cccccchhhhccccceecccccc
Confidence 8899999998765 55555443344678888887653 34444447788888877665443
No 241
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.05 E-value=0.0024 Score=62.63 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCC----C---cccccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTD----S---WKDKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~ 139 (791)
...++.|+|++|+|||||++.++....... ..-..++|++.........+. ++++.++...+ . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457999999999999999999988531100 023578999887754444332 34445543220 0 011122
Q ss_pred HH---HHHHHHHHhC-CceEEEEEcCcc
Q 038105 140 EE---KAQDIFKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 140 ~~---~~~~l~~~l~-~~~~LlVlDdv~ 163 (791)
.+ ....+.+.+. .++-++|+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2333444443 467789999984
No 242
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.02 E-value=0.004 Score=65.73 Aligned_cols=123 Identities=9% Similarity=0.135 Sum_probs=68.7
Q ss_pred CccceeEEEcccCCCCCCC--CCCCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccccccCcccccEE
Q 038105 410 GWEMVRRLSLMRNSIDNLP--TVPTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPMGISKLVSLQLL 487 (791)
Q Consensus 410 ~~~~l~~l~l~~~~~~~l~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~~~~l~~L~~L 487 (791)
..++++.+.+... +..+. .+..|.+|+.+.+..+ +..+....|.++ .|..+.+..+ +..++.......+|+.+
T Consensus 44 ~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 3456666666542 33333 4677888888888654 667777777776 4666666543 44444432233468888
Q ss_pred ecCCCcccccchhhhcCCCCceeeccCcccccccchhHhhcCcCCCeeeeeec
Q 038105 488 DISNTEVEELPEELKALVNLKCLNLDWTDVLVEVPQQLLSNFSRLRVLRMFAT 540 (791)
Q Consensus 488 ~L~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~~l~~L~~L~l~~~ 540 (791)
++..+ +..+....-...+|..+.+..+ ...+....+..+.+++.+.+...
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccc
Confidence 77654 3333333222235555555443 23444444566777777666543
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.02 E-value=0.0025 Score=63.50 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHH-HHHHH
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEK-AQDIF 147 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 147 (791)
.++.|.|++|+||||||.+++..... ...-..++|++.....+.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999999877621 1123578999988777653 367777654331 23345554 33332
Q ss_pred HH--h-CCceEEEEEcCccCc
Q 038105 148 KT--L-SKKKFALLLDDLWER 165 (791)
Q Consensus 148 ~~--l-~~~~~LlVlDdv~~~ 165 (791)
.. + +..+-++|+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 22 3 456889999999443
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.95 E-value=0.0038 Score=64.14 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC-------cccccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS-------WKDKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 139 (791)
...++.|+|++|+|||++|.+++....... +.-..++|++....++.+.+. ++++.++...+. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 457999999999999999999987642110 013578999988876666554 344555543210 011122
Q ss_pred H---HHHHHHHHHhC--CceEEEEEcCcc
Q 038105 140 E---EKAQDIFKTLS--KKKFALLLDDLW 163 (791)
Q Consensus 140 ~---~~~~~l~~~l~--~~~~LlVlDdv~ 163 (791)
+ +....+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23444444443 456788999883
No 245
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.94 E-value=0.00033 Score=67.01 Aligned_cols=112 Identities=13% Similarity=-0.035 Sum_probs=66.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
...++.++|+.|+||||++.+++.++. .....++.+....+.. ....++++++............+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 357899999999999999999998872 2333455555444321 2234566666543332233344555555555
Q ss_pred hCCc-eEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCc
Q 038105 150 LSKK-KFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRF 193 (791)
Q Consensus 150 l~~~-~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~ 193 (791)
..+. .-+||+|++... ..++.+.. +. ..+..||+|.++
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~-----~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LA-----ENGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HH-----HTTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HH-----hCCCeEEEEecc
Confidence 5444 459999999542 22222221 11 126789999885
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.93 E-value=0.0054 Score=63.44 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=41.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCCEEEEEEeCCccCHHHHHHHHHHHhCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNP---TDFDYVIWVVVSKDLQLEKIQETIGKKIGL 129 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 129 (791)
...++.|+|++|+||||+|.+++....... +.-..++|++....++.+.+.. ++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 457999999999999999999987641100 1235789999888766655543 3455554
No 247
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.91 E-value=0.0053 Score=63.75 Aligned_cols=165 Identities=10% Similarity=-0.045 Sum_probs=99.4
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHH
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLE 140 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 140 (791)
+.+.+. +.-.++..++|+.|.||++.++++..... ...|+....+......+++++...+..
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------- 70 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA--------------- 70 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH---------------
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC---------------
Confidence 444454 33578999999999999999999987652 123332111122222333333222211
Q ss_pred HHHHHHHHHhCCceEEEEEcCccC-c--ccccccccCCCCCCCCCCCcEEEEEcCc-------HHHHhh-ccccceEEec
Q 038105 141 EKAQDIFKTLSKKKFALLLDDLWE-R--VDLKKVGVPLPSRSNSPKNSAVVFTTRF-------VDVCGR-MEDRRMFKVA 209 (791)
Q Consensus 141 ~~~~~l~~~l~~~~~LlVlDdv~~-~--~~~~~~~~~l~~~~~~~~~~~iivTtR~-------~~~~~~-~~~~~~~~l~ 209 (791)
.. +-+.+-++|+|+++. . ...+.+...+.. .+.++.+|+++.. ..+... .....+++..
T Consensus 71 ------~p-lf~~~kvvii~~~~~kl~~~~~~aLl~~le~---p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 71 ------MS-LFASRQTLLLLLPENGPNAAINEQLLTLTGL---LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp ------HH-HCCSCEEEEEECCSSCCCTTHHHHHHHHHTT---CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred ------cC-CccCCeEEEEECCCCCCChHHHHHHHHHHhc---CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 11 234566788899876 3 334445555544 4456667665532 123332 2345689999
Q ss_pred cCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCCchHHHHH
Q 038105 210 CLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGLPLALITI 256 (791)
Q Consensus 210 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 256 (791)
+++.++..+.+.+.+...+...+ ++.++.+++.++|....+...
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 99999999999888765443222 567888999999988766543
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.81 E-value=0.0015 Score=75.91 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=43.8
Q ss_pred CCcccchHHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
...++|.+..++.+...+... .....+.++|+.|+|||++|+.+++.. . ...+.++++.
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~---~~~~~i~~s~ 523 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---G---IELLRFDMSE 523 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---T---CEEEEEEGGG
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---c---CCEEEEechh
Confidence 456899999998888877531 123479999999999999999999876 2 2345555543
No 249
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.77 E-value=0.0023 Score=75.16 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=43.3
Q ss_pred cccchHHHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 50 TVVGLQSQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
.++|.+..++.+...+... .....+.|+|+.|+|||++|+.+++.... .-...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~~~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---SGGGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCCcEEEEechh
Confidence 4799999998888877531 12358999999999999999999987621 112345555543
No 250
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.73 E-value=0.00082 Score=67.31 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
.+++.|+|++|+|||+||.+++... ...++|+++..... +.. ...+.++..+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~------G~~VlyIs~~~eE~-----------v~~-----~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL------GGKDKYATVRFGEP-----------LSG-----YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH------HTTSCCEEEEBSCS-----------STT-----CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC------CCCEEEEEecchhh-----------hhh-----hhcCHHHHHHHHHHHH
Confidence 4678999999999999999998751 11245666611111 110 0134555666666666
Q ss_pred CCceEEEEEcCccC
Q 038105 151 SKKKFALLLDDLWE 164 (791)
Q Consensus 151 ~~~~~LlVlDdv~~ 164 (791)
...+ ++|+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 6556 999999954
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.72 E-value=0.0039 Score=64.45 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=57.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++...+.. ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999987652 223468899987765542 355666543221 223455555555
Q ss_pred HHHhC-CceEEEEEcCccC
Q 038105 147 FKTLS-KKKFALLLDDLWE 164 (791)
Q Consensus 147 ~~~l~-~~~~LlVlDdv~~ 164 (791)
....+ .+.-++|+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 54443 3567999999943
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.61 E-value=0.0073 Score=62.01 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC-----------CCCCC--CEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVD-----------NPTDF--DYVIWVVVSKDLQLEKIQETIGKKIGLYTDS--- 133 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~-----------~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 133 (791)
...++.|+|++|+|||++|.+++..... ..+.. ..++|++....++.+.+.+ +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 4579999999999999999999875310 01111 5789999888766666553 34555543210
Q ss_pred ----cccccHH---HHHHHHHHHhC--CceEEEEEcCcc
Q 038105 134 ----WKDKRLE---EKAQDIFKTLS--KKKFALLLDDLW 163 (791)
Q Consensus 134 ----~~~~~~~---~~~~~l~~~l~--~~~~LlVlDdv~ 163 (791)
....+.+ +....+...+. .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 23444445443 355688888883
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.58 E-value=0.0048 Score=63.81 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
..+++.|.|++|+||||||.+++.... ..-..++|++.....+.. .++.++...+.+ .....++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~---~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 457999999999999999999987762 223468999987766533 245565543221 122344444444
Q ss_pred HHHh-CCceEEEEEcCcc
Q 038105 147 FKTL-SKKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l-~~~~~LlVlDdv~ 163 (791)
.... ..+.-+||+|.+.
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 3333 2345689999984
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.0056 Score=63.50 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=57.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC---cccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS---WKDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 146 (791)
...++.|.|++|+||||||.+++.... .....++|++.....+.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~---~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ---KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH---HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 457899999999999999999987762 223468999988765543 24555553221 1223456666666
Q ss_pred HHHhCC-ceEEEEEcCcc
Q 038105 147 FKTLSK-KKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~~-~~~LlVlDdv~ 163 (791)
....+. ..-+||+|.+.
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 655543 45699999994
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.56 E-value=0.003 Score=72.00 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCcccchHHHHHHHHHHhcc---------C---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC
Q 038105 48 EPTVVGLQSQLEQVWRCLVQ---------E---PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~---------~---~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 115 (791)
-..+.|.++..++|.+.+.- . ...+-|.++|++|+|||.+|++++... ... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~~--- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIKG--- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECCH---
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEecc---
Confidence 34567888888887776531 0 234678999999999999999999986 222 233321
Q ss_pred HHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh-CCceEEEEEcCccCccc----------------ccccccCCCCC
Q 038105 116 LEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL-SKKKFALLLDDLWERVD----------------LKKVGVPLPSR 178 (791)
Q Consensus 116 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~~ 178 (791)
. ++.... .+..+..++.+++.. +..+.+|+||+++.... ...+...+...
T Consensus 545 -~----~l~s~~--------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 545 -P----ELLTMW--------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp -H----HHHTTT--------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred -c----hhhccc--------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 1 222211 111233445555554 45789999999974310 01111112111
Q ss_pred CCCCCCcEEEEEcC-----cHHHHhhccccceEEeccCChHHHHHHHHHHhCccccCCCCChHHHHHHHHHHcCCC
Q 038105 179 SNSPKNSAVVFTTR-----FVDVCGRMEDRRMFKVACLSDEDAWELFREKVGEETIESHHSIPELAQTVAKECDGL 249 (791)
Q Consensus 179 ~~~~~~~~iivTtR-----~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 249 (791)
. ...+.-||-||- ++.+.+....+..+.+..-+.++-.++|+.+........+. ....+++.+.|.
T Consensus 612 ~-~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~----dl~~la~~t~g~ 682 (806)
T 3cf2_A 612 S-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV----DLEFLAKMTNGF 682 (806)
T ss_dssp C-SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred C-CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC----CHHHHHHhCCCC
Confidence 0 122222333443 22233322445678888777888888887776544322222 244566666664
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.0016 Score=66.20 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhccCC--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEe
Q 038105 54 LQSQLEQVWRCLVQEP--AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVV 110 (791)
Q Consensus 54 R~~~~~~l~~~L~~~~--~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~ 110 (791)
+...++.+.+++...+ ....+.|+|+.|+|||+||.++++.... .....+.++.+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~--~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSE--KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHH--HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHH--hcCCcEEEEEH
Confidence 4445555666665421 2478999999999999999999987720 22234556554
No 257
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.51 E-value=0.00058 Score=60.77 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=34.9
Q ss_pred CcccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|++..++++.+.+.. ......|.|+|+.|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3579999999988888764 1133568899999999999999997764
No 258
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.37 E-value=0.018 Score=55.69 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC--CC-CCCEEEEEEeCCccCHHHHHHHHHHHhC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PT-DFDYVIWVVVSKDLQLEKIQETIGKKIG 128 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 128 (791)
...+++|+|++|+|||||++.++...... .. ....++|++......... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 45799999999999999999998754111 11 234688888665433332 233344443
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.36 E-value=0.0026 Score=65.04 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=35.0
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
++++.+..-.+...++|+|++|+|||||++.++.........+. ++++-+.+.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 44555554335579999999999999999998876522123333 345666654
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.33 E-value=0.016 Score=60.92 Aligned_cols=93 Identities=12% Similarity=0.155 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC---CCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCC-------cccccH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDN---PTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDS-------WKDKRL 139 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 139 (791)
...++.|+|++|+|||||+++++-..... ......++|++.........+ ..+++.+++..+. ......
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 45799999999999999999876332110 113457899998776555444 3366666653210 011112
Q ss_pred ---HHHHHHHHHHh-CCceEEEEEcCcc
Q 038105 140 ---EEKAQDIFKTL-SKKKFALLLDDLW 163 (791)
Q Consensus 140 ---~~~~~~l~~~l-~~~~~LlVlDdv~ 163 (791)
.+.+..+...+ ..++-++|+|.+.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 12233333333 2457788999873
No 261
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.31 E-value=0.0059 Score=59.34 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
...+++|.|++|+|||||++.++.... ..-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIYVTTEE 61 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEEEESSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEEEEccc
Confidence 347999999999999999999986652 1223577777544
No 262
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.27 E-value=0.012 Score=61.99 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCCCccEEEecCCCCcccchhhhccCCcccEEeecCccccccccc-cccCcccccEEecCCCcccccch-hhhcCCCCc
Q 038105 431 PTCPHLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDIRMLQQLPM-GISKLVSLQLLDISNTEVEELPE-ELKALVNLK 508 (791)
Q Consensus 431 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~lp~-~~~~l~~L~ 508 (791)
..+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..++. .|..+.+|+.+.+.++.++.++. .|.++.+|+
T Consensus 237 ~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 34455555555443 33444444555555555555432 222222 34455555555555554544433 245555555
Q ss_pred eeeccCcccccccchhHhhcCcCCCeeee
Q 038105 509 CLNLDWTDVLVEVPQQLLSNFSRLRVLRM 537 (791)
Q Consensus 509 ~L~l~~~~~~~~~p~~~~~~l~~L~~L~l 537 (791)
.+.+..+ +..++...|.+|++|+.+.+
T Consensus 314 ~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 314 SVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred EEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 5555433 24444444555555555544
No 263
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.24 E-value=0.005 Score=58.30 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHhccC--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 53 GLQSQLEQVWRCLVQE--PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 53 GR~~~~~~l~~~L~~~--~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|++.++++.+.+... ....+|+|.|++|+||||+++.++..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677888888887652 356799999999999999999998865
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.16 E-value=0.003 Score=65.31 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|++..++.+...+..+ +.+.++|+.|+|||++|+.+++..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred ccceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHHh
Confidence 356899999999999888765 578999999999999999999876
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.14 E-value=0.013 Score=59.81 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
...++.|.|.+|+||||+|.+++..... ....++|++... +.+++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEECCC--CHHHHHHHHHHH
Confidence 4579999999999999999999877632 226789988763 456666666544
No 266
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.13 E-value=0.0051 Score=58.63 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=32.0
Q ss_pred HHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 56 SQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 56 ~~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+-+++|.+.+... +...+|+|.|++|+|||||++.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666666542 356899999999999999999998876
No 267
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.09 E-value=0.0085 Score=60.48 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccC-------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 038105 55 QSQLEQVWRCLVQE-------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKK 126 (791)
Q Consensus 55 ~~~~~~l~~~L~~~-------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 126 (791)
+.-.++|.+.+... ....+++|+|++|+||||++..++..+. .....+.+++..... ...+-+...++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~lv~~D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVVLAAADTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEEEEccccccHHHHHHHHHHHHH
Confidence 34455555555331 2457999999999999999999998873 222346666664432 122223345555
Q ss_pred hCCCCC-CcccccHHHH-HHHHHHHhCCceEEEEEcCcc
Q 038105 127 IGLYTD-SWKDKRLEEK-AQDIFKTLSKKKFALLLDDLW 163 (791)
Q Consensus 127 l~~~~~-~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv~ 163 (791)
.+++.- .....+.... ...+...+...+-++|+|..-
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 554311 0012222222 233444454555688889773
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.08 E-value=0.022 Score=58.95 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=54.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC--CCC-CCEEEEEEeCCccCHHHHHHHHHHHhCCCCC----------Cccc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDN--PTD-FDYVIWVVVSKDLQLEKIQETIGKKIGLYTD----------SWKD 136 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~ 136 (791)
...++.|+|+.|+|||||++.++...... .+. -..++|++.........+ ..+++..+.... .+..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45899999999999999999998765111 111 135689987665433333 334444433210 0011
Q ss_pred ccHHHHHHHHHHHhC------CceEEEEEcCccC
Q 038105 137 KRLEEKAQDIFKTLS------KKKFALLLDDLWE 164 (791)
Q Consensus 137 ~~~~~~~~~l~~~l~------~~~~LlVlDdv~~ 164 (791)
....+....+...+. .++-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233444444443 4678999999854
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.99 E-value=0.00084 Score=62.52 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++.++|+.|+||||++.+++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999998887776
No 270
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.95 E-value=0.0053 Score=66.52 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~---~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG---ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT---CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC---CeeEeecCchHHHHHHHHHHHHHH
Confidence 56899999999998888766 588999999999999999999876
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.86 E-value=0.028 Score=57.29 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=37.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGL 129 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 129 (791)
+..+++|+|+.|+||||+++.++..+. ..-..+.+...... ....+-+....+++++
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 467999999999999999999988763 22224555554432 2334444555666653
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.78 E-value=0.022 Score=57.22 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFK 148 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 148 (791)
...+++|+|++|+||||++..++..+... ....+.+++.... ....+.+....+..+++.. ...+..+....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE--KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998877311 2235667765442 2333344444444444321 1122333333333
Q ss_pred HhCCceEEEEEcCc
Q 038105 149 TLSKKKFALLLDDL 162 (791)
Q Consensus 149 ~l~~~~~LlVlDdv 162 (791)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 44567888954
No 273
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.77 E-value=0.013 Score=57.40 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQET 122 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 122 (791)
...++.|.|++|+||||+|.+++.... ..-..++|++.... ..++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~~--~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL---KMGEPGIYVALEEH--PVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEEEESSSC--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEccCC--HHHHHHH
Confidence 347999999999999999999877652 22346888886553 3444433
No 274
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.77 E-value=0.029 Score=56.43 Aligned_cols=90 Identities=19% Similarity=0.109 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCCCCCCc-ccccHHHHHHHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGLYTDSW-KDKRLEEKAQDIFK 148 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 148 (791)
..+++++|.+|+||||++..++..+. .....+.+++...... ....+....+..+++.-.. ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 56999999999999999999988773 2234577777654432 2333444555555432110 12344445444444
Q ss_pred HhC-CceEEEEEcCcc
Q 038105 149 TLS-KKKFALLLDDLW 163 (791)
Q Consensus 149 ~l~-~~~~LlVlDdv~ 163 (791)
.++ ...=++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 443 333478888863
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.77 E-value=0.0052 Score=56.84 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|.|+|++|+||||+|+.+++.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999987
No 276
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.68 E-value=0.049 Score=57.54 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
...+|.++|++|+||||++.+++..+. .....++.+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~---~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ---KRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH---HCCCeEEEEeCC
Confidence 468999999999999999999998773 222345555543
No 277
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.64 E-value=0.033 Score=59.03 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=38.3
Q ss_pred HHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHH
Q 038105 62 WRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGK 125 (791)
Q Consensus 62 ~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~ 125 (791)
++.|..-.+...++|+|++|+|||||+..++..... ......+++.+.+.. ...++++++..
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 444443112357899999999999999999876521 122344566665543 44566665543
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.62 E-value=0.0055 Score=56.25 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|+|.|+.|+||||+|+.++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 279
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.60 E-value=0.01 Score=62.10 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=37.9
Q ss_pred cccchHHHHHHHHHHhc-------------cC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 50 TVVGLQSQLEQVWRCLV-------------QE-PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~-------------~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++|.+..++.+...+. .. ...+.|.++|++|+|||++|+++++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999988873 11 134679999999999999999999886
No 280
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.59 E-value=0.0057 Score=60.29 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|.|+|++|+||||+|+.++..+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999876
No 281
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.58 E-value=0.047 Score=57.67 Aligned_cols=39 Identities=28% Similarity=0.173 Sum_probs=29.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
..++|.++|++|+||||++..++..+. ..-..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEecC
Confidence 368999999999999999999998773 222345566654
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.50 E-value=0.0073 Score=57.06 Aligned_cols=26 Identities=42% Similarity=0.347 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|+.|+||||+|+.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999999876
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.49 E-value=0.0052 Score=56.87 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
|.|+|.||+|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998876
No 284
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.48 E-value=0.024 Score=59.72 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=36.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH-HHHHHHHHHHhCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL-EKIQETIGKKIGL 129 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~ 129 (791)
...+++++|++|+||||++..++..+. ..-..+..+++...... ...+.......++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEeeccccCchhHHHHHHhcccCCc
Confidence 357899999999999999999998873 22345666665433221 2223344455544
No 285
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.46 E-value=0.013 Score=54.33 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=33.8
Q ss_pred cchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 52 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 52 vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
|....-+..+..++.+-+..+.+.|+|++|+||||+|.++++.+
T Consensus 39 ~~~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 39 IEFITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CCHHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445566677777654445689999999999999999999887
No 286
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.40 E-value=0.063 Score=57.00 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccC--------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 038105 56 SQLEQVWRCLVQE--------PAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKK 126 (791)
Q Consensus 56 ~~~~~l~~~L~~~--------~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 126 (791)
.-.+++.+.+... ...++|.++|.+|+||||++..++..+.. .....+..+++.... ...+.+......
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~--~~G~kVllvd~D~~r~~a~~ql~~~~~~ 154 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLRE--KHKKKVLVVSADVYRPAAIKQLETLAEQ 154 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHH--TSCCCEEEEECCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--hcCCeEEEEecCCCCccHHHHHHhhccc
Confidence 3455566665431 24679999999999999999999988732 113456777765432 222333333444
Q ss_pred hCCCCCCc-ccccHHHHHHHHHHHhC-CceEEEEEcCc
Q 038105 127 IGLYTDSW-KDKRLEEKAQDIFKTLS-KKKFALLLDDL 162 (791)
Q Consensus 127 l~~~~~~~-~~~~~~~~~~~l~~~l~-~~~~LlVlDdv 162 (791)
.+++.-.. ...+..+........+. ..-=++|+|-.
T Consensus 155 ~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 155 VGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HTCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 44321100 11233344333333333 22235666775
No 287
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.009 Score=55.35 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 288
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.35 E-value=0.023 Score=57.74 Aligned_cols=40 Identities=28% Similarity=0.311 Sum_probs=30.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
...+++|+|++|+||||++..++..+. ..-..+.+++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCC
Confidence 457999999999999999999988773 2234566776654
No 289
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.33 E-value=0.039 Score=52.40 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|.|.|++|+||+|.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.33 E-value=0.026 Score=56.75 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=51.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH-HHHHHHHHHHhCCCCCCc-ccccHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL-EKIQETIGKKIGLYTDSW-KDKRLEEKAQDIF 147 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 147 (791)
...+++|+|.+|+||||++..++..+. ..-..+.+++....... ...+..+.+..++..-.. ...+..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 357999999999999999999998873 22335667766543322 122334445555432100 1223444433333
Q ss_pred HHh-CCceEEEEEcCc
Q 038105 148 KTL-SKKKFALLLDDL 162 (791)
Q Consensus 148 ~~l-~~~~~LlVlDdv 162 (791)
..+ ....=++|+|..
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244557888987
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.32 E-value=0.016 Score=58.13 Aligned_cols=27 Identities=30% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+...+|+|.|+.|+||||||+.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999998876
No 292
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.32 E-value=0.0096 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|++|+||||+++.++..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999887
No 293
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.30 E-value=0.046 Score=55.17 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
...+++|.|++|+|||||++.++...... ....++|++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE 74 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC
Confidence 34799999999999999999998876321 122577777654
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.30 E-value=0.01 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+||||+++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34789999999999999999998763
No 295
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.27 E-value=0.011 Score=56.26 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35799999999999999999999876
No 296
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.27 E-value=0.034 Score=56.72 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKK 126 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 126 (791)
...++.|.|.+|+||||+|.+++..... .-..++|++... +.+++...+...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCC--CHHHHHHHHHHH
Confidence 3479999999999999999999888632 335788888754 355665555443
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.26 E-value=0.0091 Score=55.58 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.|+|+|+.|+||||+|+.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 298
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.25 E-value=0.025 Score=70.44 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
+.+.|.|+|++|+|||+||.+++... ...-..+.|+++....+... ++.++...+.+ +....++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea---~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH---HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 46899999999999999999998876 23345688888877765554 45555432221 222334555555
Q ss_pred HHHhC-CceEEEEEcCcc
Q 038105 147 FKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~-~~~~LlVlDdv~ 163 (791)
.+..+ .++-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 54443 467799999995
No 299
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.24 E-value=0.016 Score=61.02 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHhcc-----------------------------CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQ-----------------------------EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~-----------------------------~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|.+..++.+...+.. ......+.++|+.|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999988888877720 1124578999999999999999999876
No 300
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.23 E-value=0.021 Score=58.20 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHhcc---CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 51 VVGLQSQLEQVWRCLVQ---EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~---~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
||+-+..++++.+.+.. .+....+.|+|+.|+||||+++.++..+
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45666677777776642 2356679999999999999999998875
No 301
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.18 E-value=0.018 Score=55.43 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 52 VGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 52 vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
-..+...+.+.+.+... ....|+|+|.+|+|||||+.+++...
T Consensus 20 ~~~~~~a~~~r~~~~~~-~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 20 KANKRLADKNRKLLNKH-GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhC-CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33445556666655544 67899999999999999999998875
No 302
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.17 E-value=0.046 Score=57.73 Aligned_cols=65 Identities=25% Similarity=0.377 Sum_probs=45.2
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHH
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKK 126 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 126 (791)
+.++.|..=.+...++|+|.+|+|||+|+.++++... +.+-+.++++-+.... ...++++++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4555555422457899999999999999999988752 2233556777766543 456777777654
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.12 E-value=0.0093 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|+|+|+.|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.10 E-value=0.003 Score=65.36 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
...++|+|+.|+||||+++.++..+... .-..++.+. ...... .. .....-...............+...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~e--d~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIE--DPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRSAL 193 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEE--SSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEcc--CcHHhh--hh---ccccceeeeeeccccCCHHHHHHHHh
Confidence 4699999999999999999998765211 112222222 111000 00 00000000000001122344788888
Q ss_pred CCceEEEEEcCccCcccccccccCCCCCCCCCCCcEEEEEcCcHHHH
Q 038105 151 SKKKFALLLDDLWERVDLKKVGVPLPSRSNSPKNSAVVFTTRFVDVC 197 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~~~~~iivTtR~~~~~ 197 (791)
...+=+|++|++-+....+.+... ...|..|++|+.+....
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~------~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTA------AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHH------HHTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHH------HhcCCEEEEEEccChHH
Confidence 999999999999765444433222 12356688888865543
No 305
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.09 E-value=0.041 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|.|.|++|+||+|.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.06 E-value=0.011 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|+|.|+.|+||||+|+.+ ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 554
No 307
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.05 E-value=0.009 Score=62.21 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=34.7
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|.+...+.+....... ....|.|+|+.|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~-~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDP-GIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCG-GGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCC-CCceEEEECCCCccHHHHHHHHHHhC
Confidence 35899988666654444332 23459999999999999999999876
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.04 E-value=0.012 Score=55.13 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 309
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.03 E-value=0.015 Score=58.36 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|.|.|++|+||||+|+.++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 310
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.02 E-value=0.014 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038105 72 GIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
.+|.|.|++|+||||+|++++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.00 E-value=0.014 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++++|+|++|+|||||++.+...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998775
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.00 E-value=0.013 Score=55.37 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998875
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.99 E-value=0.0098 Score=56.29 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|+.|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 314
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.99 E-value=0.024 Score=57.39 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHhccC---CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 51 VVGLQSQLEQVWRCLVQE---PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~~---~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|-...+..+...+.+. ..+.+|+|.|+.|+||||+|+.+...+
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555555555555443 345699999999999999999998776
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.98 E-value=0.014 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|.|.|+.|+||||+|+.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999999876
No 316
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.98 E-value=0.012 Score=55.90 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++++|+|++|+||||+++.++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34789999999999999999998876
No 317
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.96 E-value=0.0013 Score=76.26 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHHhccC------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQE------------PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~------------~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|.+...+++.+.+.-. ...+.+.++|++|+|||+||+.++...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45688888888888776420 234678999999999999999999987
No 318
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.94 E-value=0.018 Score=58.37 Aligned_cols=40 Identities=25% Similarity=0.428 Sum_probs=32.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSK 112 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 112 (791)
+.++|+|.|-|||||||.+..++.-+. .....|.-+++..
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA---~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFS---ILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 569999999999999999999988773 2334577888764
No 319
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.91 E-value=0.022 Score=52.91 Aligned_cols=118 Identities=13% Similarity=0.102 Sum_probs=60.8
Q ss_pred hccCCcccEEeecCccccc-----cccccccCcccccEEecCCCccc-----ccchhhhcCCCCceeeccCcccccccch
Q 038105 454 FQSMPCLTVLKMSDIRMLQ-----QLPMGISKLVSLQLLDISNTEVE-----ELPEELKALVNLKCLNLDWTDVLVEVPQ 523 (791)
Q Consensus 454 ~~~l~~L~~L~l~~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 523 (791)
+..-+.|+.|+|++++.++ .+...+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|++|.+...-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 3444566666666531221 12233444456666666666665 2334455556677777777765322111
Q ss_pred h---HhhcCcCCCeeeeeecCc---cccccccccchhchHHHhcCCCCCcEEEEEeechh
Q 038105 524 Q---LLSNFSRLRVLRMFATGI---RSVYGRFSSWYENVAEELLGLKHLEVLEITFRSFE 577 (791)
Q Consensus 524 ~---~~~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 577 (791)
. .+..-+.|++|+++++.. ... ....+...+..-+.|+.|+++++...
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~------g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQ------VEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHH------HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHH------HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 1 123344577777765421 110 01134556666677777777766543
No 320
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.032 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.439 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.|+.|+||||+|+.+++.+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999987
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.89 E-value=0.012 Score=54.54 Aligned_cols=25 Identities=44% Similarity=0.408 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.|.|+|+.|+||||+|+.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999876
No 322
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.88 E-value=0.012 Score=54.86 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++++|.|+.|+|||||++.++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 323
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.87 E-value=0.016 Score=54.83 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 324
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.85 E-value=0.014 Score=57.30 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++++|.|+.|+||||+|++++..+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999999876
No 325
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.80 E-value=0.06 Score=57.13 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=62.8
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc-CHHHHHHHHHHHhCCC-------CC
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL-QLEKIQETIGKKIGLY-------TD 132 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~ 132 (791)
.++.|..=.+...++|+|.+|+|||+|+.++++... +.+.+.++++-+.... ...++++++...-.+. -.
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 455555433557899999999999999999988762 2234567777776544 5677777776542221 00
Q ss_pred C----cccc------cHHHHHHHHHHHhC---CceEEEEEcCcc
Q 038105 133 S----WKDK------RLEEKAQDIFKTLS---KKKFALLLDDLW 163 (791)
Q Consensus 133 ~----~~~~------~~~~~~~~l~~~l~---~~~~LlVlDdv~ 163 (791)
. ..+. ......-.+.++++ ++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 0011 12223334445554 478999999984
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.80 E-value=0.017 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998765
No 327
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.78 E-value=0.021 Score=54.83 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 50 TVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 50 ~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+-+.+...+++...+... ..++|+|+|.+|+|||||+.+++...
T Consensus 10 ~l~~~~~~~~~~~~~~~~~-~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 10 LLAENKRLAEKNREALRES-GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHH-TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHhhcHHHHHHHHHhhccc-CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444555666666665544 67899999999999999999998875
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.77 E-value=0.015 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..|+|.|+.|+||||+|+.++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 329
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.77 E-value=0.033 Score=62.45 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 49 PTVVGLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 49 ~~~vGR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|.+..++.+...+..+ ..+.|+|+.|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC---CEEEEEeCCCCCHHHHHHHHhccC
Confidence 35899999999888888866 689999999999999999999876
No 330
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.75 E-value=0.08 Score=56.49 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|++|+||||+++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.74 E-value=0.013 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+.|+|.|+.|+||||+|+.++..+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999887
No 332
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.74 E-value=0.12 Score=55.72 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC-HHHHHHHHHHHhCC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ-LEKIQETIGKKIGL 129 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~ 129 (791)
+.++|+|+|.+|+||||++.+++..+. ..-..+..++...... ..+.+.....+.++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~---~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i 157 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ---RKGWKTCLICADTFRAGAFDQLKQNATKARI 157 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSSHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEeccccchhHHHHHHHHhhccCc
Confidence 467999999999999999999998773 2223456666644322 22333334444444
No 333
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.72 E-value=0.041 Score=47.52 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=16.5
Q ss_pred cccEEecCCCcccccchh-hhcCCCCceeeccCcc
Q 038105 483 SLQLLDISNTEVEELPEE-LKALVNLKCLNLDWTD 516 (791)
Q Consensus 483 ~L~~L~L~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 516 (791)
+|++|+|++|+|+.+|.. +..+++|+.|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 345555555555544433 3444455555555444
No 334
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.71 E-value=0.047 Score=58.87 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=36.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
...++.|.|.+|+||||+|.+++..... .....++|++.... ..++...+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSC--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCC--HHHHHHHHH
Confidence 4479999999999999999999887621 12236888886654 355555543
No 335
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.69 E-value=0.046 Score=55.89 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=47.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHhC
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTLS 151 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 151 (791)
..++|+|+.|.|||||++.++..+. .....+.+.-........ ..+.++. -.+.-......+...+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~----~~~g~i~i~~~~e~~~~~----~~~~i~~-----~~ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP----KEERIISIEDTEEIVFKH----HKNYTQL-----FFGGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC----TTSCEEEEESSCCCCCSS----CSSEEEE-----ECBTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc----CCCcEEEECCeecccccc----chhEEEE-----EeCCChhHHHHHHHHhh
Confidence 6899999999999999999988762 223455554221111000 0000000 00011223455666778
Q ss_pred CceEEEEEcCccCcc
Q 038105 152 KKKFALLLDDLWERV 166 (791)
Q Consensus 152 ~~~~LlVlDdv~~~~ 166 (791)
.++=++++|++.+..
T Consensus 239 ~~p~ilildE~~~~e 253 (330)
T 2pt7_A 239 MRPDRIILGELRSSE 253 (330)
T ss_dssp SCCSEEEECCCCSTH
T ss_pred hCCCEEEEcCCChHH
Confidence 888899999996643
No 336
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.69 E-value=0.019 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+++|+|+.|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.69 E-value=0.019 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+|+.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999999876
No 338
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.66 E-value=0.017 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQI 91 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~ 91 (791)
...+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3479999999999999999954
No 339
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.66 E-value=0.017 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+|+.++..+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 340
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.65 E-value=0.18 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+|||||++.++..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998876
No 341
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.64 E-value=0.022 Score=60.23 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhccC-------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 48 EPTVVGLQSQLEQVWRCLVQE-------------PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 48 ~~~~vGR~~~~~~l~~~L~~~-------------~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...++|-+...+.+...+... ...+.+.++|+.|+|||++|++++..+
T Consensus 14 d~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 346799998888887766320 134679999999999999999999987
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.64 E-value=0.018 Score=54.04 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+|+.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999999876
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.62 E-value=0.02 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
....|+|+|+.|+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999987
No 344
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.59 E-value=0.029 Score=54.79 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 53 GLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 53 GR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+....+.++.+.+.. ......|+|.|+.|+||||+|+.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 333444444444332 2256789999999999999999998876
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.58 E-value=0.023 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+++.++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 346
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.58 E-value=0.02 Score=54.51 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|+.|+|||||++.++..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998875
No 347
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.55 E-value=0.016 Score=54.57 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.++|+|++|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 348
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.54 E-value=0.02 Score=52.72 Aligned_cols=23 Identities=43% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++|+|+.|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.49 E-value=0.023 Score=53.87 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|+.|+||||+|+.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998765
No 350
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.49 E-value=0.021 Score=51.70 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++++|.|+.|+||||++.+++..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999999999999999998876
No 351
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.49 E-value=0.011 Score=60.46 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 59 EQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 59 ~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
-++++.+..=++...+.|+|.+|+|||+|+.++++........+. ++++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 356666665335578899999999999999998886521122333 345655543
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.48 E-value=0.015 Score=53.83 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=19.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|.|.|+.|+||||+|+.+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999876
No 353
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.46 E-value=0.021 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|+.|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.46 E-value=0.026 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.309 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|+.|.|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45799999999999999999998876
No 355
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.45 E-value=0.023 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+++|+|++|+||||+++.++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 356
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.44 E-value=0.022 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
.+++|.|+.|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999864
No 357
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.41 E-value=0.023 Score=54.26 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|++|+|||||++.++...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998876
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.41 E-value=0.017 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|+|.|+.|+||||+|+.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 359
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.40 E-value=0.19 Score=53.95 Aligned_cols=52 Identities=10% Similarity=-0.062 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
...++.|.|.+|+||||+|.+++..... ..-..++|++.... ..++...+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~~--~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEMP--AAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSSC--HHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCCC--HHHHHHHHHH
Confidence 4579999999999999999999887631 12346888887643 5566666543
No 360
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.40 E-value=0.02 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.687 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 361
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.38 E-value=0.023 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34799999999999999999998876
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.37 E-value=0.016 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|+|.|+.|+||||+|+.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 363
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.36 E-value=0.023 Score=52.86 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.|+.|+||||+|+.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 364
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.35 E-value=0.022 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+++|+|+.|+||||+++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999766
No 365
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.35 E-value=0.092 Score=56.09 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=36.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIG 124 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 124 (791)
...++.|.|.+|+||||+|.+++..... .-..++|++.... .+++...+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~---~g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH---TTCEEEEECSSSC--TTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH---cCCEEEEEECCCC--HHHHHHHHH
Confidence 4579999999999999999999888632 2347888887654 334444443
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.34 E-value=0.021 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|+.|+||||+|+.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 367
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.34 E-value=0.021 Score=55.02 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|+|+|+.|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 368
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.34 E-value=0.083 Score=65.95 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
...++.|+|++|+||||||.+++.... ..-..++|++.....+.. .++.++...+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 457999999999999999999988773 223468999988776643 256666643321 233455665555
Q ss_pred HHHh-CCceEEEEEcCccC
Q 038105 147 FKTL-SKKKFALLLDDLWE 164 (791)
Q Consensus 147 ~~~l-~~~~~LlVlDdv~~ 164 (791)
.... +...-++|+|.+..
T Consensus 454 ~~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHHhcCCcEEEECCHHH
Confidence 5443 34567999999954
No 369
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.33 E-value=0.064 Score=49.74 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=63.1
Q ss_pred cCcccccEEecCCC-ccc-----ccchhhhcCCCCceeeccCcccccc----cchhHhhcCcCCCeeeeeecCccccccc
Q 038105 479 SKLVSLQLLDISNT-EVE-----ELPEELKALVNLKCLNLDWTDVLVE----VPQQLLSNFSRLRVLRMFATGIRSVYGR 548 (791)
Q Consensus 479 ~~l~~L~~L~L~~~-~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 548 (791)
..-+.|+.|+|+++ .|. .+.+.+..-+.|+.|+|++|.+... +... +..-+.|++|+++.|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~a-L~~N~tL~~L~L~~N~Ig~~--- 113 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIEL-IETSPSLRVLNVESNFLTPE--- 113 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHH-HHHCSSCCEEECCSSBCCHH---
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHH-HhcCCccCeEecCCCcCCHH---
Confidence 44567999999885 765 3455677778899999999987322 2222 45677899999999987652
Q ss_pred cccchhchHHHhcCCCCCcEEEEEee
Q 038105 549 FSSWYENVAEELLGLKHLEVLEITFR 574 (791)
Q Consensus 549 ~~~~~~~~~~~l~~l~~L~~L~l~~~ 574 (791)
....+.+.|..-+.|+.|+++++
T Consensus 114 ---Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 114 ---LLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp ---HHHHHHHHTTTTCCCSEEECCCC
T ss_pred ---HHHHHHHHHhhCCceeEEECCCC
Confidence 22346677777778899988754
No 370
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.32 E-value=0.025 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.453 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999875
No 371
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.31 E-value=0.029 Score=57.02 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
..++|+|+|-||+||||+|..++..+.+ ....|+-+++....
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~---~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH---CCCeEEEEeCCCCC
Confidence 6789999999999999999999888732 23467888876543
No 372
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.30 E-value=0.028 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
...+|+|+|+.|+||||+|+.++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4679999999999999999999874
No 373
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.29 E-value=0.024 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038105 72 GIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.25 E-value=0.026 Score=55.40 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+++.+++.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34799999999999999999999776
No 375
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.22 E-value=0.022 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+++|+|++|+|||||++.++..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999998865
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.19 E-value=0.025 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|.|+.|+||||+|+.+++.+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 377
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.18 E-value=0.031 Score=52.47 Aligned_cols=110 Identities=16% Similarity=0.035 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKT 149 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 149 (791)
...+.+++|.-|.||||.|...+.++. .....++.+....+ .+.-...++.+++........... ..+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~---~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~----~~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ---FAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSAS----KDIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEECC-------------------CCEEECSSG----GGGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCH----HHHHHH
Confidence 347888999999999999999988872 22233444443222 122223455555543221111111 133333
Q ss_pred hCCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcH
Q 038105 150 LSKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFV 194 (791)
Q Consensus 150 l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~ 194 (791)
..+.--+|++|++.-. ++++.+.... ..+..||+|.++.
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~------~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLA------NRGYRVIVAGLDQ 138 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHH------HTTCEEEEEECSB
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHh------hCCCEEEEEeccc
Confidence 4433459999999532 2333322211 2367899999853
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.16 E-value=0.027 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|.|+.|+||||+|+.++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.10 E-value=0.027 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|+.|+||||+|+.+++.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.09 E-value=0.032 Score=54.59 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998764
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.07 E-value=0.03 Score=55.02 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+|+.++..+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998865
No 382
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.06 E-value=0.044 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45799999999999999999998765
No 383
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.05 E-value=0.075 Score=55.78 Aligned_cols=103 Identities=12% Similarity=0.071 Sum_probs=56.7
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCC-EEEEEEeCC-ccCHHHHHHHHHHHhCCCCC----Cc
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFD-YVIWVVVSK-DLQLEKIQETIGKKIGLYTD----SW 134 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~----~~ 134 (791)
.++.|..=.+...++|+|.+|+|||+|+.++++......++-+ .++++-+.+ .....++.+++...-.+.-. ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4444443223456789999999999999999887521111112 455665554 44566777766553111100 00
Q ss_pred cccc------HHHHHHHHHHHh---CCceEEEEEcCcc
Q 038105 135 KDKR------LEEKAQDIFKTL---SKKKFALLLDDLW 163 (791)
Q Consensus 135 ~~~~------~~~~~~~l~~~l---~~~~~LlVlDdv~ 163 (791)
.+.. .....-.+.+++ .++.+|+++||+-
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111 111223344444 3688999999994
No 384
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.04 E-value=0.03 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 038105 72 GIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
.+|+|+|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 385
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.04 E-value=0.064 Score=54.82 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=36.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
..+++.+.|-||+||||+|..++..+. .....++-++.....++..
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCChhH
Confidence 568999999999999999999998883 3345688888876554433
No 386
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.02 E-value=0.024 Score=54.49 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|.|+.|+||||+|+.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999887
No 387
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.02 E-value=0.028 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|+.|+||||+|+.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 388
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.00 E-value=0.029 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|+.|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 389
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.00 E-value=0.077 Score=65.36 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
..+++.|.|++|+||||||.+++.... ..-..++|++.....+.. .++.++...+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 458999999999999999999988762 233578999988876653 256666543221 233455555555
Q ss_pred HHHh-CCceEEEEEcCccCc
Q 038105 147 FKTL-SKKKFALLLDDLWER 165 (791)
Q Consensus 147 ~~~l-~~~~~LlVlDdv~~~ 165 (791)
.... +.+.-++|+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 5444 245669999999543
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.00 E-value=0.051 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 391
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.00 E-value=0.028 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 392
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.99 E-value=0.034 Score=56.38 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+|||||++.++..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 56899999999999999999998876
No 393
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.98 E-value=0.033 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.|+.|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 394
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.97 E-value=0.03 Score=53.73 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+...|+|.|+.|+||||+|+.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999887
No 395
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.96 E-value=0.053 Score=55.74 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
..+++.+.|.||+||||+|..++..+... .....++-++.....++.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHNLS 63 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCChH
Confidence 56899999999999999999998887200 334567888877554433
No 396
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.96 E-value=0.16 Score=56.68 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|.|||||++.++.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998765
No 397
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.94 E-value=0.13 Score=54.59 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=56.6
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHH-HHHhcccCCCCCCC-EEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC---
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLYTDS--- 133 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~--- 133 (791)
+.++.+..=.+...++|+|..|+|||+||. .+++.. .-+ .++++-+.+. ....++.+.+...-.+.-..
T Consensus 151 raID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEE
T ss_pred eecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEE
Confidence 345565543355788999999999999964 666654 234 3456666654 45667777776533221000
Q ss_pred -cccccHH------HHHHHHHHHh--CCceEEEEEcCcc
Q 038105 134 -WKDKRLE------EKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 134 -~~~~~~~------~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
..+.... ...-.+.+++ +++.+|+++||+.
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0111111 1122333333 4789999999994
No 398
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.92 E-value=0.056 Score=55.67 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+||||+++.++..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35799999999999999999998877
No 399
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.92 E-value=0.052 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 899999999999999999998765
No 400
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.88 E-value=0.074 Score=55.78 Aligned_cols=103 Identities=12% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCC-------CCCC-EEEEEEeCC-ccCHHHHHHHHHHHhCCCC
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNP-------TDFD-YVIWVVVSK-DLQLEKIQETIGKKIGLYT 131 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~-------~~f~-~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 131 (791)
.++.|..=.+...++|+|.+|+|||+|+.++++...... ++-+ .++++-+.+ .....++.+++...-.+.-
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 444444322446778999999999999999988752110 1122 455655554 4455666666544311100
Q ss_pred -----CCccccc-----HHHHHHHHHHHh---CCceEEEEEcCcc
Q 038105 132 -----DSWKDKR-----LEEKAQDIFKTL---SKKKFALLLDDLW 163 (791)
Q Consensus 132 -----~~~~~~~-----~~~~~~~l~~~l---~~~~~LlVlDdv~ 163 (791)
....... .....-.+.+++ +++.+|+++||+-
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 0001111 112223344444 3688999999994
No 401
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.79 E-value=0.17 Score=55.39 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=38.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGK 125 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 125 (791)
...++.|.|.+|+||||+|.+++..... ..-..++|++.... .+++...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~s--~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEES--VEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSSC--HHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccCC--HHHHHHHHHH
Confidence 4478999999999999999999988732 11346888887654 5566665543
No 402
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.79 E-value=0.063 Score=50.80 Aligned_cols=43 Identities=23% Similarity=0.094 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQL 116 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 116 (791)
.-.|.+.|.||+||||+|..++..+.. ..+ .+.++.+......
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~--~G~-~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLR--QGV-RVMAGVVETHGRA 48 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH--TTC-CEEEEECCCTTCH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH--CCC-CEEEEEeCCCCCh
Confidence 345889999999999999999888732 223 4556666554333
No 403
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.79 E-value=0.031 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 404
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.77 E-value=0.04 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++|+|+|+.|+||||||..++..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34699999999999999999999876
No 405
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.76 E-value=0.04 Score=54.96 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++|+|.|+.|+||||||..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999876
No 406
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.76 E-value=0.054 Score=53.38 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998765
No 407
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.75 E-value=0.091 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|-|.-|+||||.++.+++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999988
No 408
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.74 E-value=0.055 Score=53.70 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
++|+|.|-||+||||+|..++..+. .....++-+++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la---~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH---AMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH---TTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH---HCCCcEEEEcCCCC
Confidence 6788899999999999999998883 22346777877644
No 409
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.74 E-value=0.21 Score=48.26 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=49.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-CEEEEEEeCCccCHHHHHHHHHHHhCCCCC------------------
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKFVDNPTDF-DYVIWVVVSKDLQLEKIQETIGKKIGLYTD------------------ 132 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 132 (791)
+.+.|.|+.|+||||++..+.-+.....+.. ...+.+.........++.+.+...++....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 6899999999999987766543211111111 223333334433445556666655543210
Q ss_pred CcccccHHHHHHHHHHHhCCceEEEEEcCccCc
Q 038105 133 SWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER 165 (791)
Q Consensus 133 ~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 165 (791)
..--...+.+...+...+.+ --++|+|+++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCccC
Confidence 01112344455555543433 347899999863
No 410
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=93.72 E-value=0.066 Score=52.20 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccC-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 56 SQLEQVWRCLVQE-PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 56 ~~~~~l~~~L~~~-~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.-...+..++... +....+.++|++|+|||.+|.++++..
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3444566666665 446789999999999999999999864
No 411
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.72 E-value=0.11 Score=48.69 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|.|.|+.|+||||+++.+++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999987
No 412
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.70 E-value=0.054 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999998765
No 413
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.70 E-value=0.038 Score=55.71 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+||||+++.++..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998876
No 414
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.69 E-value=0.036 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|+.|+||||+|+.+++.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998874
No 415
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.69 E-value=0.34 Score=51.35 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=55.7
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHHHHHhCCCCCC----c
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETIGKKIGLYTDS----W 134 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~ 134 (791)
.++.+..=.+...++|.|..|+|||+|| ..+++.. ..--.++++-+.+. ....++.+.+.+.-.+.-.. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 4555554334568899999999999996 4565542 22224567777665 45667777765542221000 0
Q ss_pred ccccH------HHHHHHHHHHh--CCceEEEEEcCcc
Q 038105 135 KDKRL------EEKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 135 ~~~~~------~~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
.+... ....-.+.+++ +++.+|+++||+.
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 01111 11122223333 5789999999994
No 416
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.67 E-value=0.12 Score=55.04 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=55.3
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHH-HHHhcccCCCCCCC-EEEEEEeCCc-cCHHHHHHHHHHHhCCC------C
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLY------T 131 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~ 131 (791)
.++.+..=.+...++|+|..|+|||+||. .+++.. .-+ .++++-+.+. ....++.+.+...-.+. .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 45555542245688999999999999965 666553 234 3456666654 45667777765532111 0
Q ss_pred CCcccccH----HHHHHHHHHHh--CCceEEEEEcCcc
Q 038105 132 DSWKDKRL----EEKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 132 ~~~~~~~~----~~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
..-+.... ....-.+.+++ +++.+|+++||+.
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 00011011 11122333443 4789999999994
No 417
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.66 E-value=0.033 Score=53.17 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 418
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.65 E-value=0.041 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|+|+.|+||||+++.++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998876
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.64 E-value=0.036 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.61 E-value=0.04 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|+|.|+.|+||||+|+.++..+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998876
No 421
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.59 E-value=0.06 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45799999999999999999998765
No 422
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.56 E-value=0.018 Score=53.55 Aligned_cols=109 Identities=12% Similarity=0.004 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCcccccHHHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSWKDKRLEEKAQDIFKTL 150 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 150 (791)
..+.+++|+.|.||||.+...++++. ..... ++.+....+. +.-...+..+++.........+. ..+.+.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~--~~g~k-V~v~k~~~d~--r~~~~~i~s~~g~~~~a~~~~~~----~~i~~~~ 78 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK--IAKQK-IQVFKPEIDN--RYSKEDVVSHMGEKEQAVAIKNS----REILKYF 78 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--HTTCC-EEEEEEC---------CEEECTTSCEEECEEESSS----THHHHHC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--HCCCE-EEEEEeccCc--cchHHHHHhhcCCceeeEeeCCH----HHHHHHH
Confidence 47999999999999999999988873 22333 3333322111 11112333444332111111111 1344444
Q ss_pred CCceEEEEEcCccCc--ccccccccCCCCCCCCCCCcEEEEEcCcH
Q 038105 151 SKKKFALLLDDLWER--VDLKKVGVPLPSRSNSPKNSAVVFTTRFV 194 (791)
Q Consensus 151 ~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~~~~~iivTtR~~ 194 (791)
.+.--+|++|++.-. ..++.+.... ..+..||+|.++.
T Consensus 79 ~~~~dvViIDEaqfl~~~~v~~l~~l~------~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 79 EEDTEVIAIDEVQFFDDEIVEIVNKIA------ESGRRVICAGLDM 118 (191)
T ss_dssp CTTCSEEEECSGGGSCTHHHHHHHHHH------HTTCEEEEEECSB
T ss_pred hccCCEEEEECCCCCCHHHHHHHHHHH------hCCCEEEEEeccc
Confidence 443348999998432 2233332221 2267899998853
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.52 E-value=0.041 Score=50.25 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++++|.|+.|+|||||++.+...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998876
No 424
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.50 E-value=0.047 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
.+++|+|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999765
No 425
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.49 E-value=0.04 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|+|.|+.|+||||||+.++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 426
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.48 E-value=0.054 Score=54.42 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD 113 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 113 (791)
+++|+|.|-||+||||+|..++..+.+ ....++-+++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~---~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE---MGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 578888999999999999999988732 2335777777654
No 427
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.46 E-value=0.12 Score=53.46 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=29.3
Q ss_pred HHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 58 LEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 58 ~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++.+.+.. .++..+|+|+|.+|+||||++.+++..+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444554442 3467899999999999999999998776
No 428
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.45 E-value=0.041 Score=52.82 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 429
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.43 E-value=0.062 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34799999999999999999998755
No 430
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.43 E-value=0.43 Score=52.97 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVD 97 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~ 97 (791)
...+++|+|+.|+|||||++.++.....
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 3579999999999999999999876543
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.37 E-value=0.025 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.++++|+|++|+|||||++.+...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 432
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.35 E-value=0.042 Score=56.20 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
..++...|.||+||||+|..++..+. .....++-++.....++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA---~~G~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMA---RSGKKTLVISTDPAHSLSDS 59 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEECCSSCCHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH---HCCCcEEEEeCCCCcCHHHH
Confidence 46778889999999999999998873 23446778887766555433
No 433
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.35 E-value=0.07 Score=52.24 Aligned_cols=26 Identities=42% Similarity=0.585 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998765
No 434
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.31 E-value=0.069 Score=52.85 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998765
No 435
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.31 E-value=0.022 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.679 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+|+|.|+.|+||||+|+.++..+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998876
No 436
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.30 E-value=0.039 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+++|+|+.|+|||||++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999998776
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.29 E-value=0.047 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|+|+|+.|+||||||+.++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.28 E-value=0.063 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998765
No 439
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.28 E-value=0.09 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|.|+.|+||||+++.+++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999988
No 440
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.27 E-value=0.089 Score=51.87 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..++++.|.||+||||++..++..+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999877
No 441
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.26 E-value=0.061 Score=51.04 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 442
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.26 E-value=0.05 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..++++|.|+.|+||||||..+++.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999876
No 443
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.24 E-value=0.056 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 444
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.22 E-value=0.033 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-hcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQIN-NKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~-~~~ 95 (791)
..+++|+|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 445
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.22 E-value=0.051 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
...+|+|.|+.|+||||+|+.++.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 446
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.22 E-value=0.039 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..+|+|+|+.|+||||+++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999999876
No 447
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.22 E-value=0.043 Score=53.74 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINN 93 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~ 93 (791)
...+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999883
No 448
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.20 E-value=0.072 Score=51.93 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34799999999999999999998765
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.20 E-value=0.05 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.|.|.|+.|+||||||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999998765
No 450
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.18 E-value=0.073 Score=51.66 Aligned_cols=26 Identities=38% Similarity=0.540 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998765
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.13 E-value=0.049 Score=52.79 Aligned_cols=26 Identities=23% Similarity=0.532 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999998765
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.13 E-value=0.052 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|.|+.|+||||+|+.+++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999887
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.10 E-value=0.075 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34799999999999999999998765
No 454
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.04 E-value=0.08 Score=52.26 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45799999999999999999998765
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.03 E-value=0.08 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44799999999999999999998765
No 456
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.02 E-value=0.14 Score=54.17 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=58.3
Q ss_pred HHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CCCEEEEEEeCC-ccCHHHHHHHHHHHhCCCCCC----c
Q 038105 61 VWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPT-DFDYVIWVVVSK-DLQLEKIQETIGKKIGLYTDS----W 134 (791)
Q Consensus 61 l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~ 134 (791)
.++.|..=.+...++|+|.+|+|||+|+.+++........ .-..++++-+.+ .....++.+++...-.+.-.. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4455544224467788999999999999999987622111 113455665554 445667777776542211000 0
Q ss_pred cccc------HHHHHHHHHHHhC---CceEEEEEcCcc
Q 038105 135 KDKR------LEEKAQDIFKTLS---KKKFALLLDDLW 163 (791)
Q Consensus 135 ~~~~------~~~~~~~l~~~l~---~~~~LlVlDdv~ 163 (791)
.+.. .....-.+.++++ ++.+|+++||+.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 0111 1122333444443 689999999983
No 457
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.02 E-value=0.071 Score=53.22 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=30.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCC-------CCCEEEEEEeCCc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPT-------DFDYVIWVVVSKD 113 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~-------~f~~~~wv~~~~~ 113 (791)
..++.|+|++|+|||||+..++........ .-..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 479999999999999999999875522100 0235677776654
No 458
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.01 E-value=0.044 Score=52.38 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.|+.|+||||+|+.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 459
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.01 E-value=0.14 Score=44.09 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=18.8
Q ss_pred CccEEEecCCCCcccchhhhccCCcccEEeecCc
Q 038105 435 HLLTLFLNDNELTTITDDFFQSMPCLTVLKMSDI 468 (791)
Q Consensus 435 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 468 (791)
+|+.|+|++|.++.++.+.|..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555555555555555555555555555555
No 460
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.00 E-value=0.42 Score=46.14 Aligned_cols=100 Identities=18% Similarity=0.148 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCC-C
Q 038105 53 GLQSQLEQVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLY-T 131 (791)
Q Consensus 53 GR~~~~~~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~ 131 (791)
=|+...+.+..++... -+.|+|+.|.|||.+|..++... . ..++++. ....-..+..+.+.+ ++.. .
T Consensus 94 l~~~Q~~ai~~~~~~~----~~ll~~~tG~GKT~~a~~~~~~~-----~-~~~liv~-P~~~L~~q~~~~~~~-~~~~~v 161 (237)
T 2fz4_A 94 LRDYQEKALERWLVDK----RGCIVLPTGSGKTHVAMAAINEL-----S-TPTLIVV-PTLALAEQWKERLGI-FGEEYV 161 (237)
T ss_dssp CCHHHHHHHHHHTTTS----EEEEEESSSTTHHHHHHHHHHHS-----C-SCEEEEE-SSHHHHHHHHHHHGG-GCGGGE
T ss_pred cCHHHHHHHHHHHhCC----CEEEEeCCCCCHHHHHHHHHHHc-----C-CCEEEEe-CCHHHHHHHHHHHHh-CCCCeE
Confidence 3455555555544432 38899999999999999888764 1 2244443 222223344444433 3322 1
Q ss_pred C----------CcccccHHHHHHHHHHHhCCceEEEEEcCccCc
Q 038105 132 D----------SWKDKRLEEKAQDIFKTLSKKKFALLLDDLWER 165 (791)
Q Consensus 132 ~----------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~ 165 (791)
. .......+...... +.+.++--+||+|+++..
T Consensus 162 ~~~~g~~~~~~~i~v~T~~~l~~~~-~~~~~~~~llIiDEaH~l 204 (237)
T 2fz4_A 162 GEFSGRIKELKPLTVSTYDSAYVNA-EKLGNRFMLLIFDEVHHL 204 (237)
T ss_dssp EEESSSCBCCCSEEEEEHHHHHHTH-HHHTTTCSEEEEECSSCC
T ss_pred EEEeCCCCCcCCEEEEeHHHHHhhH-HHhcccCCEEEEECCccC
Confidence 0 01111223332222 334445569999999765
No 461
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.97 E-value=0.05 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
++|+|.|+.|+||||+|+.++..+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999876
No 462
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.96 E-value=0.18 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+++.|.|++|+||||++..++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998876
No 463
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.96 E-value=0.089 Score=51.49 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHH
Q 038105 74 IGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLE 117 (791)
Q Consensus 74 v~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 117 (791)
|+|.|-||+||||+|..++..+. .....++-+++....++.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la---~~g~~VlliD~D~~~~l~ 43 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA---SDYDKIYAVDGDPDSCLG 43 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT---TTCSCEEEEEECTTSCHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHH---HCCCeEEEEeCCCCcChH
Confidence 55699999999999999999883 233568888887655443
No 464
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.93 E-value=0.11 Score=64.03 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=62.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHHHHHHHHHhCCCCCCc---ccccHHHHHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKIQETIGKKIGLYTDSW---KDKRLEEKAQDI 146 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 146 (791)
+.++|-|+|+.|+||||||.++.... ...-...+|+++....+... ++.+++..+.. ++..-++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45899999999999999999998765 34456788999887766553 78888765432 233345555666
Q ss_pred HHHhC-CceEEEEEcCcc
Q 038105 147 FKTLS-KKKFALLLDDLW 163 (791)
Q Consensus 147 ~~~l~-~~~~LlVlDdv~ 163 (791)
...++ +..-++|+|-|.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 66664 456699999994
No 465
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=92.91 E-value=0.21 Score=53.19 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=56.8
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHH-HHHHhcccC---CCCCCC-EEEEEEeCCc-cCHHHHHHHHHHHhCCC---
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLL-TQINNKFVD---NPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLY--- 130 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa-~~~~~~~~~---~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~--- 130 (791)
+.++.+..=.+...++|+|..|+|||+|| ..+++.... ...+-+ .++++-+.+. ....++.+.+...-.+.
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 34555554334578899999999999995 455555410 001223 4566666654 45667777766532211
Q ss_pred ---CCCcccccH----HHHHHHHHHHh--CCceEEEEEcCcc
Q 038105 131 ---TDSWKDKRL----EEKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 131 ---~~~~~~~~~----~~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
....+.... ....-.+.+++ +++.+|+++||+.
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 000001011 11122233333 4789999999994
No 466
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.90 E-value=0.18 Score=53.73 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHhcccCCCCCCC-EEEEEEeCCc-cCHHHHHHHHHHHhCCC-------C--CCccc-
Q 038105 70 AAGIIGLYGMGGVGKTTLLT-QINNKFVDNPTDFD-YVIWVVVSKD-LQLEKIQETIGKKIGLY-------T--DSWKD- 136 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~--~~~~~- 136 (791)
+...++|+|..|+|||+||. .+++.. . -+ .++++-+.+. ....++.+.+...-.+. . +....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 45678999999999999964 666653 2 33 3456666554 34556666664432110 0 00000
Q ss_pred ccHHHHHHHHHHHh--CCceEEEEEcCcc
Q 038105 137 KRLEEKAQDIFKTL--SKKKFALLLDDLW 163 (791)
Q Consensus 137 ~~~~~~~~~l~~~l--~~~~~LlVlDdv~ 163 (791)
.......-.+.+++ +++.+|+++||+.
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11112222222332 5789999999984
No 467
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.90 E-value=0.065 Score=50.56 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=32.8
Q ss_pred eEEEEE-cCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHH
Q 038105 72 GIIGLY-GMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEK 118 (791)
Q Consensus 72 ~vv~i~-G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 118 (791)
++|+|+ +-||+||||+|..++..+. .....++.+++....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la---~~g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS---RSGYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH---HCCCeEEEEECCCCCCHHH
Confidence 577777 7788999999999998883 2334688888876654443
No 468
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.84 E-value=0.031 Score=56.09 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+..+|+|.|+.|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998865
No 469
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.82 E-value=0.061 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999997754
No 470
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.81 E-value=0.11 Score=54.23 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHHhc-----------cCCCceEEEEEc-CCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccC
Q 038105 52 VGLQSQLEQVWRCLV-----------QEPAAGIIGLYG-MGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQ 115 (791)
Q Consensus 52 vGR~~~~~~l~~~L~-----------~~~~~~vv~i~G-~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 115 (791)
-.-+..++++.+.+. .+.+.++|+|+| -||+||||+|..++..+. .....++.+++....+
T Consensus 113 q~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La---~~g~rVlliD~D~~~~ 185 (373)
T 3fkq_A 113 QRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHA---NMGKKVFYLNIEQCGT 185 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHH---HHTCCEEEEECCTTCC
T ss_pred CCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHH---hCCCCEEEEECCCCCC
Confidence 345566666666541 123578888885 999999999999988873 2234688888874443
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.78 E-value=0.065 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999875
No 472
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.78 E-value=0.089 Score=52.24 Aligned_cols=26 Identities=42% Similarity=0.537 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44799999999999999999998765
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.74 E-value=0.075 Score=51.80 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 474
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.69 E-value=0.059 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 475
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.69 E-value=0.13 Score=53.13 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=32.1
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 68 EPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 68 ~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
.+...++.+.|.||+||||+|..++..+.+ ....++-++.....
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~---~G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAE---KGLKVVIVSTDPAH 66 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHH---SSCCEEEEECCTTC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEeCCCCC
Confidence 334567777899999999999999888732 23457777766543
No 476
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.64 E-value=0.073 Score=52.35 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+||||+++.++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 45799999999999999999998765
No 477
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.64 E-value=0.057 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 478
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.62 E-value=0.3 Score=52.59 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=41.5
Q ss_pred HHHHHhccCCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCc-cCHHHHHHHH
Q 038105 60 QVWRCLVQEPAAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKD-LQLEKIQETI 123 (791)
Q Consensus 60 ~l~~~L~~~~~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i 123 (791)
+.++.|..=.+...++|.|..|+|||+|+.++++.. +-+.++++-+... ....++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 355666553355789999999999999999998864 2256777777655 3455555554
No 479
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.62 E-value=0.12 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
..|+|-|.-|+||||+++.+++.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 568899999999999999999988
No 480
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.58 E-value=0.064 Score=52.77 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998765
No 481
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.54 E-value=0.069 Score=52.22 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
...+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999874
No 482
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.53 E-value=0.12 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 69 PAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 69 ~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+...+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999999765
No 483
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.14 Score=47.63 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....|+|+|.+|+|||||+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998754
No 484
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.47 E-value=0.083 Score=53.09 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45799999999999999999998765
No 485
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.46 E-value=0.07 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.-.|+|+|+.|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.45 E-value=0.069 Score=56.68 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+|.|+|++|+||||+|++++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999998765
No 487
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.43 E-value=0.2 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
....++|+|+.|.|||||++.+..-+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45799999999999999999997765
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.43 E-value=0.052 Score=57.60 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeC
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVS 111 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 111 (791)
.++|+|+|++|+||||++.+++..+. .....+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~---~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ---KRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH---HHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEecc
Confidence 46899999999999999999988762 222345666654
No 489
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.41 E-value=0.083 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
+.|+|+|.+|+|||||+.++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998753
No 490
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.37 E-value=0.076 Score=53.24 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|.|||||++.++.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45899999999999999999998765
No 491
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.33 E-value=0.12 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|.|++|+|||||++.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44799999999999999999998865
No 492
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.33 E-value=0.18 Score=47.68 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.|+.|+||||+++.+++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999988
No 493
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.32 E-value=0.11 Score=56.13 Aligned_cols=45 Identities=11% Similarity=-0.035 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHhcc-CCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 51 VVGLQSQLEQVWRCLVQ-EPAAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 51 ~vGR~~~~~~l~~~L~~-~~~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+.|.+..+.+.+.... .....+|++.|++|+||||+|++++..+
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 35555556666665532 1245789999999999999999999998
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.23 E-value=0.091 Score=50.27 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 71 AGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 71 ~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...|+|.|+.|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 495
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.16 E-value=0.13 Score=52.70 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=32.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDL 114 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 114 (791)
..+++.+.|-||+||||+|..++..+. .....+.-++.....
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA---~~G~rVllvD~D~~~ 59 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMS---KVRSSVLLISTDPAH 59 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHH---TSSSCEEEEECCTTC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHH---HCCCeEEEEECCCCc
Confidence 457888889999999999999998883 233457778876554
No 496
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.14 E-value=0.066 Score=49.52 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 038105 73 IIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 73 vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
-|+|+|.+|+|||||++.++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 497
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.13 E-value=0.085 Score=47.70 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNK 94 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~ 94 (791)
..|+|+|.+|+|||||..++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 498
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.07 E-value=0.19 Score=51.87 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=35.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCCEEEEEEeCCccCHHHH
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKFVDNPTDFDYVIWVVVSKDLQLEKI 119 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 119 (791)
...+++..|-||+||||+|..++..+... .....++-++.....++...
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~-~~G~rVLLvD~D~~~~l~~~ 65 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALS-QPNKQFLLISTDPAHNLSDA 65 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCCHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCCHHHH
Confidence 45678888999999999999999888300 33346788887765555443
No 499
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.07 E-value=0.077 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 70 AAGIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 70 ~~~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 500
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.04 E-value=0.16 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 038105 72 GIIGLYGMGGVGKTTLLTQINNKF 95 (791)
Q Consensus 72 ~vv~i~G~gGiGKTtLa~~~~~~~ 95 (791)
.+++|.|++|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 589999999999999999999 65
Done!