BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038106
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 121 bits (304), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 10/306 (3%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82
+G +P + +L+ L L +N G I + L L L GN+F G +P F +
Sbjct: 260 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 83 SKLSILEFSKNSFSGFIP-NTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSN-CKSLTH 140
S L L S N+FSG +P +T +R L+ L L N + PE SL+N SL
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLT 372
Query: 141 IGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNG 200
+ LS+N + N ++L++ + N +G IP +SN + L ++ L N L+G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 201 SIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASL 260
+IP +L L KL+ L+ N LEG IP + + L L L N L G IP+ SN +L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 261 RILSLGSNELT-SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319
+SL +N LT IP L N+ L S+N F+ +P E+G+ + L+ +D + N F+G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 320 VIPTEI 325
IP +
Sbjct: 553 TIPAAM 558
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 161/330 (48%), Gaps = 12/330 (3%)
Query: 24 GTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83
G AI + LK L + N G I + L +L+ L L N F+G IP F+ A
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 84 K-LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
L+ L+ S N F G +P FG+ L+ L L N + P + +L + L +
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----MDTLLKMRGLKVLD 349
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGI-PEEISNLTN-LTTIDLGGNMLNG 200
LS N LP+ S+ NLS SL + + N SG I P N N L + L N G
Sbjct: 350 LSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 201 SIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASL 260
IP TLS +L L N L G+IP S+ L++L +L+L N L G IP + +L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 261 RILSLGSNELT-SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319
L L N+LT IP N N+ +++ S+N T +P IG L+ L + S N+FSG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 320 VIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
IP E+G ++L +L L N G+IP +
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 170/359 (47%), Gaps = 48/359 (13%)
Query: 24 GTVPAAIFNVS-TLKSLELQDNSLFGSISSIIDVRLPNL--------ERLLLWGNNFSGT 74
G +P ++ N+S +L +L+L N+ G I LPNL + L L N F+G
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPI-------LPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 75 IPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP-ELSFL---- 129
IP + N S+L L S N SG IP++ G+L L+ L+L+ N L P EL ++
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 130 --------------SSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVS 175
S LSNC +L I LSNN L +PK IG L +L K+ N + S
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRL-ENLAILKLSNNSFS 527
Query: 176 GGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTE 235
G IP E+ + +L +DL N+ NG+IP + K Q + N + G I
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGM 583
Query: 236 LYELELGGNKL-FGSIPACFSNLASLR----ILSLGSNELTSIPLTFWNLNNILYLNFSS 290
E GN L F I + N S R I S TS TF N ++++L+ S
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP--TFDNNGSMMFLDMSY 641
Query: 291 NFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
N + +P EIG++ L ++ N+ SG IP E+G L+ L L L N+L G IP +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 151/342 (44%), Gaps = 57/342 (16%)
Query: 56 VRLPNLERLLLWGNNFSGTIPRFIFN-ASKLSILEFSKNSFSG-FIPNTFGNLRN-LQKL 112
+++ L+ L L N FSG +P + N ++ L L+ S N+FSG +PN N +N LQ+L
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC 172
L +N T P +LSNC L + LS N L +P +S+G+LS L D K+
Sbjct: 400 YLQNNGFTGKIPP-----TLSNCSELVSLHLSFNYLSGTIP-SSLGSLSK-LRDLKLWLN 452
Query: 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICR 232
+ G IP+E+ + L T+ L N L G IP LS L + +N+L G IP I R
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 233 LTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELT-SIPLTFWNLNNILYLNF--- 288
L L L+L N G+IPA + SL L L +N +IP + + + NF
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 289 -------------------------------------------SSNFFTAPLPLEIGNLK 305
+S + N
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 306 VLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347
++ +D S N SG IP EIG + L L LG+N + GSIPD
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 40/323 (12%)
Query: 33 VSTLKSLELQDNSLFGS--ISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEF 90
+++L+ L+L NS+ G+ + ++ L+ L + GN SG + + L L+
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 207
Query: 91 SKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S N+FS IP G+ LQ L + N L+ F ++S C L + +S+N
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGD-----FSRAISTCTELKLLNISSNQFVG 261
Query: 151 ILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTN-LTTIDLGGNMLNGSIPITLSKL 209
+P + SL+ + +G IP+ +S + LT +DL GN G++P
Sbjct: 262 PIPPLPL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 210 QKLQGLRFEDNKLEGSIP-DSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSN 268
L+ L N G +P D++ ++ L L+L N+ G +P +NL++
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--------- 368
Query: 269 ELTSIPLTFWNLNNILYLNFSSNFFTAP-LPLEIGNLK-VLVGMDFSMNNFSGVIPTEIG 326
++L L+ SSN F+ P LP N K L + N F+G IP +
Sbjct: 369 -------------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 327 GLKNLEYLFLGYNRLQGSIPDSF 349
L L L +N L G+IP S
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSL 438
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 39 LELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGF 98
L++ N L G I I +P L L L N+ SG+IP + + L+IL+ S N G
Sbjct: 637 LDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 99 IPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIG 158
IP L L ++ L +N L+ PE+ + K L + GL PL P + G
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 155/306 (50%), Gaps = 10/306 (3%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82
+G +P + +L+ L L +N G I + L L L GN+F G +P F +
Sbjct: 257 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 83 SKLSILEFSKNSFSGFIP-NTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSN-CKSLTH 140
S L L S N+FSG +P +T +R L+ L L N + PE SL+N SL
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLT 369
Query: 141 IGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNG 200
+ LS+N + N ++L++ + N +G IP +SN + L ++ L N L+G
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 201 SIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASL 260
+IP +L L KL+ L+ N LEG IP + + L L L N L G IP+ SN +L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 261 RILSLGSNELT-SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319
+SL +N LT IP L N+ L S+N F+ +P E+G+ + L+ +D + N F+G
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 320 VIPTEI 325
IP +
Sbjct: 550 TIPAAM 555
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 114/330 (34%), Positives = 161/330 (48%), Gaps = 12/330 (3%)
Query: 24 GTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83
G AI + LK L + N G I + L +L+ L L N F+G IP F+ A
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 84 K-LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
L+ L+ S N F G +P FG+ L+ L L N + P + +L + L +
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP----MDTLLKMRGLKVLD 346
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGI-PEEISNLTN-LTTIDLGGNMLNG 200
LS N LP+ S+ NLS SL + + N SG I P N N L + L N G
Sbjct: 347 LSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 201 SIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASL 260
IP TLS +L L N L G+IP S+ L++L +L+L N L G IP + +L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 261 RILSLGSNELT-SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSG 319
L L N+LT IP N N+ +++ S+N T +P IG L+ L + S N+FSG
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 320 VIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
IP E+G ++L +L L N G+IP +
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 119/359 (33%), Positives = 170/359 (47%), Gaps = 48/359 (13%)
Query: 24 GTVPAAIFNVS-TLKSLELQDNSLFGSISSIIDVRLPNL--------ERLLLWGNNFSGT 74
G +P ++ N+S +L +L+L N+ G I LPNL + L L N F+G
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPI-------LPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 75 IPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP-ELSFL---- 129
IP + N S+L L S N SG IP++ G+L L+ L+L+ N L P EL ++
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 130 --------------SSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVS 175
S LSNC +L I LSNN L +PK IG L +L K+ N + S
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRL-ENLAILKLSNNSFS 524
Query: 176 GGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTE 235
G IP E+ + +L +DL N+ NG+IP + K Q + N + G I
Sbjct: 525 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGM 580
Query: 236 LYELELGGNKL-FGSIPACFSNLASLR----ILSLGSNELTSIPLTFWNLNNILYLNFSS 290
E GN L F I + N S R I S TS TF N ++++L+ S
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP--TFDNNGSMMFLDMSY 638
Query: 291 NFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
N + +P EIG++ L ++ N+ SG IP E+G L+ L L L N+L G IP +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 151/342 (44%), Gaps = 57/342 (16%)
Query: 56 VRLPNLERLLLWGNNFSGTIPRFIFN-ASKLSILEFSKNSFSG-FIPNTFGNLRN-LQKL 112
+++ L+ L L N FSG +P + N ++ L L+ S N+FSG +PN N +N LQ+L
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC 172
L +N T P +LSNC L + LS N L +P +S+G+LS L D K+
Sbjct: 397 YLQNNGFTGKIPP-----TLSNCSELVSLHLSFNYLSGTIP-SSLGSLSK-LRDLKLWLN 449
Query: 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICR 232
+ G IP+E+ + L T+ L N L G IP LS L + +N+L G IP I R
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 233 LTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELT-SIPLTFWNLNNILYLNF--- 288
L L L+L N G+IPA + SL L L +N +IP + + + NF
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 289 -------------------------------------------SSNFFTAPLPLEIGNLK 305
+S + N
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 306 VLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347
++ +D S N SG IP EIG + L L LG+N + GSIPD
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/323 (26%), Positives = 143/323 (44%), Gaps = 40/323 (12%)
Query: 33 VSTLKSLELQDNSLFGS--ISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEF 90
+++L+ L+L NS+ G+ + ++ L+ L + GN SG + + L L+
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 204
Query: 91 SKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S N+FS IP G+ LQ L + N L+ F ++S C L + +S+N
Sbjct: 205 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGD-----FSRAISTCTELKLLNISSNQFVG 258
Query: 151 ILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTN-LTTIDLGGNMLNGSIPITLSKL 209
+P + SL+ + +G IP+ +S + LT +DL GN G++P
Sbjct: 259 PIPPLPL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 210 QKLQGLRFEDNKLEGSIP-DSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSN 268
L+ L N G +P D++ ++ L L+L N+ G +P +NL++
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA--------- 365
Query: 269 ELTSIPLTFWNLNNILYLNFSSNFFTAP-LPLEIGNLK-VLVGMDFSMNNFSGVIPTEIG 326
++L L+ SSN F+ P LP N K L + N F+G IP +
Sbjct: 366 -------------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 327 GLKNLEYLFLGYNRLQGSIPDSF 349
L L L +N L G+IP S
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSL 435
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 24 GTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNAS 83
G N ++ L++ N L G I I +P L L L N+ SG+IP + +
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGL 143
L+IL+ S N G IP L L ++ L +N L+ PE+ + K L + GL
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 144 SNNPLDCILPKTSIGNLSH 162
PL P + G H
Sbjct: 738 CGYPLPRCDPSNADGYAHH 756
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 9/222 (4%)
Query: 130 SSLSNCKSLT--HIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTN 187
SSL+N L +IG NN + I P +I L+ L + + NVSG IP+ +S +
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPP--AIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKT 126
Query: 188 LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY-ELELGGNKL 246
L T+D N L+G++P ++S L L G+ F+ N++ G+IPDS ++L+ + + N+L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 247 FGSIPACFSNLASLRILSLGSNELT-SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLK 305
G IP F+NL +L + L N L + F + N ++ + N L ++G K
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244
Query: 306 VLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347
L G+D N G +P + LK L L + +N L G IP
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 56/250 (22%)
Query: 26 VPAAIFNVSTLKSLELQD-NSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84
+P+++ N+ L L + N+L G I I +L L L + N SG IP F+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLS 144
L L+FS N+ SG +P + +L NL + N ++ + P+
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD------------------- 167
Query: 145 NNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNG---- 200
S G+ S + ++G IP +NL NL +DL NML G
Sbjct: 168 -----------SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Query: 201 ----------------SIPITLSKL---QKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241
S+ L K+ + L GL +N++ G++P + +L L+ L +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 242 GGNKLFGSIP 251
N L G IP
Sbjct: 276 SFNNLCGEIP 285
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 250 IPACFSNLASLRILSLG--SNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVL 307
IP+ +NL L L +G +N + IP L + YL + + +P + +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 308 VGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
V +DFS N SG +P I L NL + NR+ G+IPDS+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Query: 186 TNLTTIDLGGNMLNGSIP------ITLSKLQKL-------QGLRFEDNKLEGSIPDSIC- 231
T++TT+DL GN S+ I +K+Q L G F + PD+
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD--PDNFTF 269
Query: 232 ---RLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLN 287
+ + +L +K+F + + FS+ L L+L NE+ I FW L ++L LN
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 288 FSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347
S NF + NL L +D S N+ + GL NL+ L L N+L+ S+PD
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD 388
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 1/114 (0%)
Query: 29 AIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSIL 88
A + ++ L L L N L GSI S + L LE L L N+ + L L
Sbjct: 318 AFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 89 EFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
N F L +LQK+ L+ N S P + +LS N S G
Sbjct: 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 430
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 54/291 (18%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L FS N + P NL L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 184 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 234
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N +S L L G LT+L
Sbjct: 235 -----LASLTNLTDLDLANNQ--------ISNLAPLSG------------------LTKL 263
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTA 295
EL+LG N++ P + L +L L L N+L I P++ NL N+ YL N +
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISD 319
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
P + +L L + FS N S V + + L N+ +L G+N++ P
Sbjct: 320 ISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 60/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 62 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 111
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 112 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDL 166
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 167 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 225 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 283
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 169 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 223
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ N VS
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 342 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 397
Query: 228 DSICRLT 234
+++ +T
Sbjct: 398 NTVKNVT 404
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 54/291 (18%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L FS N + P NL L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 184 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 234
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N +S L L G LT+L
Sbjct: 235 -----LASLTNLTDLDLANNQ--------ISNLAPLSG------------------LTKL 263
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTA 295
EL+LG N++ P + L +L L L N+L I P++ NL N+ YL N +
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISD 319
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
P + +L L + F N S V + + L N+ +L G+N++ P
Sbjct: 320 ISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 366
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 60/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 62 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 111
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 112 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDL 166
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 167 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 225 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 283
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 169 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 223
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ +N VS
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 341
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 342 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 397
Query: 228 DSICRLT 234
+++ +T
Sbjct: 398 NTVKNVT 404
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L FS N + P NL L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 184 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 234
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N ++ P LS L KL L+ N++ P + LT L
Sbjct: 235 -----LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 285
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273
LEL N+L P SNL +L L+L N ++ I
Sbjct: 286 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 60/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 62 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 111
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 112 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSNQVTDL 166
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 167 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 225 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 283
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 169 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 223
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ +N VS
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 341
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 342 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 397
Query: 228 DSICRLT 234
+++ +T
Sbjct: 398 NTVKNVT 404
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 38/239 (15%)
Query: 74 TIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLS 133
+P+ I + ++L+ N S + F L++L L L +N + S E +F S
Sbjct: 47 AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-SKIHEKAF----S 99
Query: 134 NCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEI-SNLTNLTTID 192
+ L + +S N L I P NL SL + ++H+ + +P+ + S L N+ I+
Sbjct: 100 PLRKLQKLYISKNHLVEIPP-----NLPSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIE 153
Query: 193 LGGNMLNGS--------------IPITLSKL--------QKLQGLRFEDNKLEGSIPDSI 230
+GGN L S + I+ +KL + L L + NK++ + +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL 213
Query: 231 CRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLN--NILYLN 287
R ++LY L LG N++ S L +LR L L +N+L+ +P +L ++YL+
Sbjct: 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 23 IGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81
+ ++P +F+ ++ LK L L +N L + D +L NL L L N ++P+ +F+
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQ-SLPKGVFD 154
Query: 82 A-SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTH 140
+ L+ L+ S N F L L+ LRLY N L S P+ F SL +
Sbjct: 155 KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVF----DRLTSLQY 209
Query: 141 IGLSNNPLDCILP 153
I L +NP DC P
Sbjct: 210 IWLHDNPWDCTCP 222
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 182 ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELE 240
+ LTNLT + L GN L KL L+ L +N+L+ S+PD + +LT L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
L N+L F L +L L L N+L S+P
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELGG 243
LTNL + L N L KL L L N+L+ S+P + +LT L EL+L
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSY 166
Query: 244 NKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPLP 298
N+L F L L+ L L N+L S+P F L ++ Y+ N + P
Sbjct: 167 NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 23 IGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81
+ ++P +F+ ++ L L L N L + D +L NL L L N ++P +F+
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQ-SLPEGVFD 178
Query: 82 A-SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTH 140
++L L +N F L +LQ + L+DN + P + +LS N H
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN----KH 234
Query: 141 IGLSNNPLDCILPKTS 156
G+ N + P ++
Sbjct: 235 SGVVRNSAGSVAPDSA 250
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 63/308 (20%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NLE L L GN + P + N KL+ L N + + NL NL++L L ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 118 YLTSSTP----------------ELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS 161
++ +P LS LS LSN L ++ ++ + + + P I NL+
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP---IANLT 177
Query: 162 HSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPIT-LSKLQKLQGLRFEDN 220
+++ +++ E+IS L +LT++ +N IT ++ +L L+ +N
Sbjct: 178 ------DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNN 231
Query: 221 KLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNL 280
K+ P + L++L LE+G N++ S +L L+ L++GSN+++ I + L
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISDISV----L 283
Query: 281 NNILYLN--FSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGY 338
NN+ LN F +N ++GN V IGGL NL LFL
Sbjct: 284 NNLSQLNSLFLNNN-------QLGNEDXEV----------------IGGLTNLTTLFLSQ 320
Query: 339 NRLQGSIP 346
N + P
Sbjct: 321 NHITDIRP 328
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 80/200 (40%), Gaps = 13/200 (6%)
Query: 150 CILPKTSIGNLSHSLEDFKMHNCNVSG---GIPEEISNLTNLTTIDLGGNMLNGSIPITL 206
+L K S+ ++ E + V+G + I LTNL ++L GN + P L
Sbjct: 27 AVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--L 84
Query: 207 SKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
S L KL L NK+ ++ LT L EL L + + P +NL L+LG
Sbjct: 85 SNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLG 140
Query: 267 SNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIG 326
+N S N + YL + + P I NL L + + N + P +
Sbjct: 141 ANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196
Query: 327 GLKNLEYLFLGYNRLQGSIP 346
L +L Y N++ P
Sbjct: 197 SLTSLHYFTAYVNQITDITP 216
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 55/291 (18%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L F N + P NL L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 183 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 233
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N +S L L G LT+L
Sbjct: 234 -----LASLTNLTDLDLANNQ--------ISNLAPLSG------------------LTKL 262
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTA 295
EL+LG N++ P + L +L L L N+L I P++ NL N+ YL N +
Sbjct: 263 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISD 318
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
P + +L L + FS N S V + + L N+ +L G+N++ P
Sbjct: 319 ISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 365
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 62 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 111
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 112 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF-GNQVTDL 165
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 166 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 224 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 282
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 283 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 168 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 222
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 223 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ N VS
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 341 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 396
Query: 228 DSICRLT 234
+++ +T
Sbjct: 397 NTVKNVT 403
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 37/180 (20%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL L L DN +T TP L N +T + LS NPL + ++I L S++
Sbjct: 68 LNNLIGLELKDNQITDLTP-------LKNLTKITELELSGNPLKNV---SAIAGL-QSIK 116
Query: 166 DFKMHNCNVSGGIP--------------EEISN------LTNLTTIDLGGNMLNGSIPIT 205
+ + ++ P +I+N LTNL + +G N +N P
Sbjct: 117 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTP-- 174
Query: 206 LSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSL 265
L+ L KL LR +DNK+ P + L L E+ L N++ P +NL++L I++L
Sbjct: 175 LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTL 230
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 263 LSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTAPLPLE----IGNLKVLVGMDFSMNNF 317
L L N++T + PL NL I L S N PL+ I L+ + +D +
Sbjct: 74 LELKDNQITDLTPL--KNLTKITELELSGN------PLKNVSAIAGLQSIKTLDLTSTQI 125
Query: 318 SGVIPTEIGGLKNLEYLFLGYNRL 341
+ V P + GL NL+ L+L N++
Sbjct: 126 TDVTP--LAGLSNLQVLYLDLNQI 147
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 55/291 (18%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L F N + P NL L++L + N
Sbjct: 132 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 186
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 187 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 237
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N +S L L G LT+L
Sbjct: 238 -----LASLTNLTDLDLANNQ--------ISNLAPLSG------------------LTKL 266
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNFFTA 295
EL+LG N++ P + L +L L L N+L I P++ NL N+ YL N +
Sbjct: 267 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISD 322
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
P + +L L + F+ N S V + + L N+ +L G+N++ P
Sbjct: 323 ISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTP 369
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 66 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 115
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 116 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDL 169
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 170 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 227
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 228 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 286
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 287 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 172 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 226
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 227 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 284
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ N VS
Sbjct: 285 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 344
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 345 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 400
Query: 228 DSICRLT 234
+++ +T
Sbjct: 401 NTVKNVT 407
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 41 LQDNSLFGSISSI-IDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFI 99
L DN L G ISS + RLP+L +L L N +G P AS + L+ +N
Sbjct: 36 LNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 100 PNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDC 150
F L L+ L LYDN ++ P S + SLT + L++NP +C
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMP-----GSFEHLNSLTSLNLASNPFNC 140
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGS 267
+L L L + N+L G P++ + + EL+LG NK+ F L L+ L+L
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 268 NELTSI-PLTFWNLNNILYLNFSSNFFTA 295
N+++ + P +F +LN++ LN +SN F
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/317 (26%), Positives = 124/317 (39%), Gaps = 64/317 (20%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
LP L+ L L N S + + L+ L+ NS N F N +NL KL L N
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 118 YLTSS-------------------------TPELSFLSSLSNCKSLTHIGLSNNPLDCIL 152
L+S+ + EL FL + SL + LS+NPL
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN----SSLRKLDLSSNPLKEFS 187
Query: 153 PK--TSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQ 210
P +IG L L + N +++ + E+SN T++ + L N L + T S
Sbjct: 188 PGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFS--- 243
Query: 211 KLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNEL 270
GL++ T L +L+L N L FS L SLR LSL N +
Sbjct: 244 ---GLKW----------------TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 271 TSI-PLTFWNLNNILYLNFSSNFFTAPLPL---------EIGNLKVLVGMDFSMNNFSGV 320
+ P +F+ L+N+ YL+ F + L LK L ++ NN
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
Query: 321 IPTEIGGLKNLEYLFLG 337
GL +L+YL L
Sbjct: 345 KSNTFTGLVSLKYLSLS 361
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 108/283 (38%), Gaps = 31/283 (10%)
Query: 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
S +++L + N P F L L N ++ PEL + L L +
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL-----LKVLN 79
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGS- 201
L +N L I +T + +L + + + ++ N NL +DL N L+ +
Sbjct: 80 LQHNELSQISDQTFV--FCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTK 137
Query: 202 ---------IPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPA 252
+ L K+ LR E+ + G+ + L +L+L N L P
Sbjct: 138 LGTGVQLENLQELLLAKNKILALRSEELEFLGN--------SSLRKLDLSSNPLKEFSPG 189
Query: 253 CFSNLASLRILSLGSNELTS--IPLTFWNLNN--ILYLNFSSNFFTAPLPLEIGNLKV-- 306
CF + L L L + +L W L+N I L+ ++N A LK
Sbjct: 190 CFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTN 249
Query: 307 LVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
L +D S NN V L +L YL L YN +Q P SF
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 117/299 (39%), Gaps = 68/299 (22%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILE----FSKNSFS-GFIPN----TFGNLRN 108
LP+L L L NN PR + S L L F+K S S PN +F L+
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 109 LQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNN--PLDCILPKTSIGNLSHS--- 163
L+ L + DN + S+ ++ + SL ++ LS L + +T + L+HS
Sbjct: 331 LEYLNMDDNNIPSTKS-----NTFTGLVSLKYLSLSKTFTSLQTLTNETFVS-LAHSPLL 384
Query: 164 -LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKL 222
L K H ++ G S L L +DLG N + QKL G +
Sbjct: 385 TLNLTKNHISKIANGT---FSWLGQLRILDLGLNEIE----------QKLSGQEWRG--- 428
Query: 223 EGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNN 282
L ++E+ L NK + F+ + SL+ L L L ++ +
Sbjct: 429 ----------LRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDI------- 471
Query: 283 ILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341
+P P L+ L +D S NN + + + GL+NLE L +N L
Sbjct: 472 ------------SPSPFRP--LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNL 516
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 23 IGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81
+ T+PA IF + L++L + DN L + D +L NL L L N PR +
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD-QLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 82 ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHI 141
+KL+ L N F L +L++LRLY+N L PE +F L+ K+L
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAF-DKLTELKTLK-- 187
Query: 142 GLSNNPLDCILPKTSIGNLSHSLEDFKM 169
L NN L + P+ + SLE KM
Sbjct: 188 -LDNNQLKRV-PEGAF----DSLEKLKM 209
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 31/209 (14%)
Query: 60 NLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYL 119
+ ++L L N S + +KL +L + N F L+NL+ L + DN L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 120 TSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIP 179
+ P + L N L + L N L + P+
Sbjct: 98 -QALP-IGVFDQLVN---LAELRLDRNQLKSLPPRV------------------------ 128
Query: 180 EEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYEL 239
+LT LT + LG N L KL L+ LR +N+L+ + +LTEL L
Sbjct: 129 --FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186
Query: 240 ELGGNKLFGSIPACFSNLASLRILSLGSN 268
+L N+L F +L L++L L N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 146 NPLDCILPK-TSI-GNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIP 203
N +DC K T+I N+ + + + +S + LT L + L N L
Sbjct: 19 NSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 204 ITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRIL 263
+L+ L+ L DNKL+ +L L EL L N+L P F +L L L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138
Query: 264 SLGSNELTSIP 274
SLG NEL S+P
Sbjct: 139 SLGYNELQSLP 149
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 176 GGIPEEISNLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSICRLT 234
GI +E+ NL L D N L ++PI +L L LR + N+L+ P LT
Sbjct: 78 AGIFKELKNLETLWVTD---NKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 235 ELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
+L L LG N+L F L SL+ L L +N+L +P
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 183 SNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELEL 241
L NL + L N L P L KL L N+L+ S+P + +LT L EL L
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRL 164
Query: 242 GGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSN 291
N+L F L L+ L L +N+L +P F +L + L N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 68/179 (37%), Gaps = 38/179 (21%)
Query: 172 CNVSGGIPEEISNLTNLTTIDLGGNMLNG---SIPITLSKLQKLQGLRFEDNKLEGSIPD 228
C GG+ S N ++D L +IP KL + NKL
Sbjct: 5 CKKDGGV---CSCNNNKNSVDCSSKKLTAIPSNIPADTKKLD------LQSNKLSSLPSK 55
Query: 229 SICRLTELYELELGGNKLFGSIPA-CFSNLASLRILSLGSNELTSIPLTFWNLNNILYLN 287
+ RLT+L L L NKL ++PA F L +L L + N+L ++P+ ++
Sbjct: 56 AFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVFD-------- 106
Query: 288 FSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
L L + N + P L L YL LGYN LQ S+P
Sbjct: 107 ---------------QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLP 149
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 26/217 (11%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L F N + P NL L++L + N
Sbjct: 133 LTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSN 187
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 188 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 238
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N ++ P LS L KL L+ N++ P + LT L
Sbjct: 239 -----LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273
LEL N+L P SNL +L L+L N ++ I
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 67 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 116
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 117 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDL 170
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 171 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 228
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 229 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 287
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 173 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 227
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 228 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ +N VS
Sbjct: 286 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 345
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 401
Query: 228 DSICRLT 234
+++ +T
Sbjct: 402 NTVKNVT 408
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 61/281 (21%)
Query: 106 LRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLE 165
L NL ++ +N LT TP L N L I ++NN + I P ++ NL+
Sbjct: 62 LNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQIADITPLANLTNLTG--- 111
Query: 166 DFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS 225
+ N ++ P + NLTNL ++L N + S LS L LQ L F N++
Sbjct: 112 -LTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF-GNQVTDL 165
Query: 226 IPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRI-------------------LSL 265
P + LT L L++ NK+ S+ A +NL SL LSL
Sbjct: 166 KP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 223
Query: 266 GSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL--------------EIGNLKVLVG-- 309
N+L I T +L N+ L+ ++N + PL +I N+ L G
Sbjct: 224 NGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT 282
Query: 310 ----MDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
++ + N + P I LKNL YL L +N + P
Sbjct: 283 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 26/217 (11%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L NL RL L N S + + L L F N + P NL L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSN 182
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSH-SLEDFKMHNCNVSG 176
++ ++S L+ L+N +SL +NN + I P + NL SL ++ +
Sbjct: 183 KVS----DISVLAKLTNLESLIA---TNNQISDITPLGILTNLDELSLNGNQLKDIGT-- 233
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
+++LTNLT +DL N ++ P LS L KL L+ N++ P + LT L
Sbjct: 234 -----LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 284
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273
LEL N+L P SNL +L L+L N ++ I
Sbjct: 285 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 53/247 (21%)
Query: 30 IFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89
+ N++TL+ L++ N + IS + +L NLE L+ N S P I + L L
Sbjct: 168 LANLTTLERLDISSNKV-SDISVL--AKLTNLESLIATNNQISDITPLGIL--TNLDELS 222
Query: 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP---------------ELSFLSSLSN 134
+ N T +L NL L L +N +++ P ++S +S L+
Sbjct: 223 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 280
Query: 135 CKSLTHIGLSNNPLDCILPKTSIGNLSH------------------SLEDFKMHNCNVSG 176
+LT++ L+ N L+ I P +++ NL++ L+ +N VS
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD 340
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---------KLEGSIP 227
++NLTN+ + G N ++ P L+ L ++ L D K SIP
Sbjct: 341 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIP 396
Query: 228 DSICRLT 234
+++ +T
Sbjct: 397 NTVKNVT 403
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS-STPELSFLSSLSNCKSLTHIG 142
L IL+ SKN F L +L L L+DN LT+ T +LS L +
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE------LW 113
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPE-EISNLTNLTTIDLGGNMLNGS 201
L NNP++ I P + + SL + I E L NL ++LG M N
Sbjct: 114 LRNNPIESI-PSYAFNRVP-SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG--MCNLK 169
Query: 202 IPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLR 261
L+ L +L+ L N+L+ P S LT L +L L ++ F +L SL
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 262 ILSLGSNELTSIP 274
L+L N L S+P
Sbjct: 230 ELNLSHNNLMSLP 242
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS-STPELSFLSSLSNCKSLTHIG 142
L IL+ SKN F L +L L L+DN LT+ T +LS L +
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE------LW 113
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPE-EISNLTNLTTIDLGGNMLNGS 201
L NNP++ I P + + SL + I E L NL ++LG M N
Sbjct: 114 LRNNPIESI-PSYAFNRVP-SLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG--MCNLK 169
Query: 202 IPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLR 261
L+ L +L+ L N+L+ P S LT L +L L ++ F +L SL
Sbjct: 170 DIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE 229
Query: 262 ILSLGSNELTSIP 274
L+L N L S+P
Sbjct: 230 ELNLSHNNLMSLP 242
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 175 SGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN---KLEGSIPDSIC 231
S P + S + TT+D + S+P + Q L DN KLE + DS+
Sbjct: 10 SAACPSQCS--CSGTTVDCRSKR-HASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLI 64
Query: 232 RLTELYELELGGNKLFGSIPA-CFSNLASLRILSLGSNELTSIP-LTFWNLNNILYLNFS 289
L ELY LG N+L G++P F +L L +L LG+N+LT +P F L ++ L
Sbjct: 65 NLKELY---LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120
Query: 290 SNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFL 336
N T LP I L L + N + L +L + +L
Sbjct: 121 CNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 24 GTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA- 82
+VPA I + + L L DN + + D L NL+ L L G+N G +P +F++
Sbjct: 32 ASVPAGIPTNAQI--LYLHDNQITKLEPGVFD-SLINLKELYL-GSNQLGALPVGVFDSL 87
Query: 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCK------ 136
++L++L+ N + F L +L++L + N LT + L+ L++
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
Query: 137 ------------SLTHIGLSNNPLDC 150
SLTH L NP DC
Sbjct: 148 KSIPHGAFDRLSSLTHAYLFGNPWDC 173
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 233 LTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNF 292
LT LY L GN L +PA NL++LR+L L N LTS+P + + Y F N
Sbjct: 249 LTRLY---LNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM 304
Query: 293 FTAPLPLEIGNL 304
T LP E GNL
Sbjct: 305 VTT-LPWEFGNL 315
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 218 EDNKLEGSI---PDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
ED+ +E + DS + L+L ++F +I A L L L N LT +P
Sbjct: 205 EDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELP 263
Query: 275 LTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYL 334
NL+N+ L+ S N T+ LP E+G+ L F +N +P E G L NL++L
Sbjct: 264 AEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFL 321
Query: 335 FLGYNRLQ 342
+ N L+
Sbjct: 322 GVEGNPLE 329
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 171 NCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI 230
N N +P EI NL+NL +DL N L S+P L +L+ F DN + ++P
Sbjct: 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN-MVTTLPWEF 312
Query: 231 CRLTELYELELGGNKL 246
L L L + GN L
Sbjct: 313 GNLCNLQFLGVEGNPL 328
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 184 NLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELEL 241
+LT L T+ L N L S+P+ L +L L N+L+ S+P + RLT+L EL L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 242 GGNKLFGSIPA-CFSNLASLRILSLGSNELTSIP 274
N+L SIPA F L +L+ LSL +N+L S+P
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELGG 243
LT LT ++L N L L +L L +N+L S+P + LT+L +L LGG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 244 NKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSN 291
N+L F L L+ L L +N+L SIP F L N+ L+ S+N
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGG 243
+LT L + LGGN L +L KL+ LR N+L+ + +LT L L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 244 NKLFGSIPACFSNLASLRILSLGSNE 269
N+L F L L+ ++L N+
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICR 232
+V GIP + L DL L T L KL L + N+L+
Sbjct: 28 SVPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 233 LTELYELELGGNKLFGSIP-ACFSNLASLRILSLGSNELTSIP 274
LTEL L L N+L S+P F +L L L LG N+L S+P
Sbjct: 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 184 NLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELEL 241
+LT L T+ L N L S+P+ L +L L N+L+ S+P + RLT+L EL L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRL 138
Query: 242 GGNKLFGSIPA-CFSNLASLRILSLGSNELTSIP 274
N+L SIPA F L +L+ LSL +N+L S+P
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELGG 243
LT LT ++L N L L +L L +N+L S+P + LT+L +L LGG
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 244 NKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSN 291
N+L F L L+ L L +N+L SIP F L N+ L+ S+N
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%)
Query: 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGG 243
+LT L + LGGN L +L KL+ LR N+L+ + +LT L L L
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164
Query: 244 NKLFGSIPACFSNLASLRILSLGSNE 269
N+L F L L+ ++L N+
Sbjct: 165 NQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICR 232
+V GIP + L DL L T L KL L + N+L+
Sbjct: 28 SVPSGIPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81
Query: 233 LTELYELELGGNKLFGSIP-ACFSNLASLRILSLGSNELTSIP 274
LTEL L L N+L S+P F +L L L LG N+L S+P
Sbjct: 82 LTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELGG 243
LT+LT + LGGN L +KL L L N+L+ S+P+ + +LT+L EL L
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 244 NKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPLPLEIG 302
N+L F L L+ L L N+L S+P F L ++ Y+ N + P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP---- 165
Query: 303 NLKVLVGMDFSMNNFSGVIPTEIGGL 328
++ L +N SGV+ G +
Sbjct: 166 GIRYLSEW---INKHSGVVRNSAGSV 188
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 215 LRFEDNKLEGSIPDSI-CRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273
L E N L+ S+P+ + LT L +L LGGNKL F+ L SL L+L +N+L S+
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 274 P-LTFWNLNNILYLNFSSNFFTAPLPLEI-GNLKVLVGMDFSMNNFSGVIPTEIGGLKNL 331
P F L + L ++N + LP + L L + N V L +L
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 332 EYLFLGYNRLQGSIP 346
+Y++L N + P
Sbjct: 151 QYIWLHDNPWDCTCP 165
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 23 IGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81
+ ++P +FN +++L L L N L + + D +L L+ L L N ++P +F+
Sbjct: 64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD-KLTQLKELALNTNQLQ-SLPDGVFD 121
Query: 82 A-SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTH 140
++L L +N F L +LQ + L+DN + P + +LS N H
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN----KH 177
Query: 141 IGLSNNPLDCILPKTS 156
G+ N + P ++
Sbjct: 178 SGVVRNSAGSVAPDSA 193
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKL 222
++E + +V GIP + T +DL N L +L L L NKL
Sbjct: 11 TVECYSQGRTSVPTGIPAQT------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL 64
Query: 223 EGSIPDSIC-RLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
+ S+P+ + +LT L L L N+L F L L+ L+L +N+L S+P
Sbjct: 65 Q-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 12/201 (5%)
Query: 55 DVRLPNLERLLLWGN--NFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKL 112
+V LP+LE L L N +F G + F + L L+ S F+G I + N L++L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMS-SNFLGLEQL 398
Query: 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMH-N 171
D + S+ ++S S + ++L ++ +S+ I N SLE KM N
Sbjct: 399 EHLD-FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGN 455
Query: 172 CNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSIC 231
+P+ + L NLT +DL L P + L LQ L N+L+ S+PD I
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIF 514
Query: 232 -RLTELYELELGGNKLFGSIP 251
RLT L ++ L N S P
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCP 535
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKL-EGSIPDSICRLTELYELELGG 243
L NL +D+ + + L L+ L+ N E +PD L L L+L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 244 NKLFGSIPACFSNLASLRILSLGSNELTSIP 274
+L P F++L+SL++L++ SN+L S+P
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 58 LPNLERLLLWGNNFSGT-IPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYD 116
L +LE L + GN+F +P L+ L+ S+ P F +L +LQ L +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 117 NYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPK 154
N L S P+ F SL I L NP DC P+
Sbjct: 504 NQL-KSVPDGIF----DRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 29 AIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87
IFN +S+L+ L++ NS + I L NL L L P + S L +
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
L + N F L +LQK+ L+ N S P + +LS N S G
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 553
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 106
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 107 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 195 GNMLNGSIPITLSKLQKL 212
N + L L ++
Sbjct: 158 SNKIQSIYCTDLRVLHQM 175
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 29/165 (17%)
Query: 186 TNLTTIDLGGNMLNGSIPIT--LSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELG 242
T+L +DL NG I ++ L++L+ L F+ + L+ S+ L L L++
Sbjct: 373 TSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 243 GNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIG 302
+ F+ L+SL +L + N +F NF LP
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGN------------------SFQENF----LPDIFT 467
Query: 303 NLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347
L+ L +D S + PT L +L+ L + N+L+ S+PD
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPD 511
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 45/232 (19%)
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGL 143
L IL+ S+N F L NL L L+DN LT + P +F+ LS K L L
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFV-YLSKLKEL---WL 143
Query: 144 SNNPLDCI----------LPKTSIGNLSH-------------SLEDFKMHNCNVSGGIPE 180
NNP++ I L + +G L +L + CN+
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-----R 198
Query: 181 EISNLT---NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
EI NLT L +DL GN L+ P + L LQ L ++++ ++ L L
Sbjct: 199 EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLN-NILYLNF 288
E+ L N L F+ L L + L N WN N +IL+L++
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNP--------WNCNCDILWLSW 302
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 78/194 (40%), Gaps = 36/194 (18%)
Query: 178 IPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
+P+ IS TN ++L N + + L+ L+ L+ N + + L L
Sbjct: 58 VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL---------------------- 275
LEL N+L F L+ L+ L L +N + SIP
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 276 ----TFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVG---MDFSMNNFSGVIPTEIGGL 328
F L+N+ YLN + EI NL L+ +D S N+ S + P GL
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR-----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 329 KNLEYLFLGYNRLQ 342
+L+ L++ +++Q
Sbjct: 231 MHLQKLWMIQSQIQ 244
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS 121
+RL L N + P + L L F+ N + F L L +L L DN+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-K 94
Query: 122 STPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S P +F N KSLTHI L NNP DC
Sbjct: 95 SIPRGAF----DNLKSLTHIYLYNNPWDC 119
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 174 VSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CR 232
V GIP + L L N + P L LQ L F NKL +IP + +
Sbjct: 27 VPAGIPTDKQRLW------LNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDK 79
Query: 233 LTELYELELGGNKLFGSIP-ACFSNLASLRILSLGSN 268
LT+L +L+L N L SIP F NL SL + L +N
Sbjct: 80 LTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82
+ +VPA I + + L L +N + + D L NL++L N + IP +F+
Sbjct: 24 LASVPAGI--PTDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTA-IPTGVFDK 79
Query: 83 -SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFL 129
++L+ L+ + N F NL++L + LY+N ++ +L
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYL 127
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 175 SGGIPEEIS---NLTNLTTIDLGGNMLNGSIPITL-SKLQKLQGLRFEDNKLEGSIPDSI 230
S G P + S L N I L S+P + + Q+L + KLE + D +
Sbjct: 3 SAGCPSQCSCDQTLVNCQNIRLA------SVPAGIPTDKQRLWLNNNQITKLEPGVFDHL 56
Query: 231 CRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFS 289
L +LY NKL F L L L L N L SIP F NL ++ ++
Sbjct: 57 VNLQQLY---FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113
Query: 290 SN 291
+N
Sbjct: 114 NN 115
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 220 NKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFW 278
N+++ D L ELEL N + P F+NL +LR L L SN L IPL F
Sbjct: 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 279 NLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFL 336
L+N+ L+ S N L +L L ++ N+ + GL +LE L L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 122/324 (37%), Gaps = 79/324 (24%)
Query: 42 QDNSLFGSISSIIDVR--LPNLERLLLWGNNFSGTIPRFIFNA-SKLSILEFSKNSFSGF 98
QD ++ + V +P RLL G N T+ + F + L LE ++N S
Sbjct: 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Query: 99 IPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCI------- 151
P F NL NL+ L L N L L + LSN LT + +S N + +
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSN---LTKLDISENKIVILLDYMFQD 126
Query: 152 ---LPKTSIGN-----LSH-------SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGN 196
L +G+ +SH SLE + CN++ E +S+L L + L
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 197 MLNGSIPITLSKLQKLQGLRFED---------NKLEG----SIPDSICRLT--------- 234
+N + +L +L+ L N L G S+ + C LT
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246
Query: 235 --------------------------ELYELELGGNKLFGSIPACFSNLASLRILSLGSN 268
L E++L G +L P F L LR+L++ N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 269 ELTSIPLT-FWNLNNILYLNFSSN 291
+LT++ + F ++ N+ L SN
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSN 330
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 110/292 (37%), Gaps = 24/292 (8%)
Query: 27 PAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLS 86
P A N+ L++L L+ N L I + L NL +L + N + + L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131
Query: 87 ILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS-STPELSFLS--------------- 130
LE N F L +L++L L LTS T LS L
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191
Query: 131 ---SLSNCKSLTHIGLSNNP-LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLT 186
S L + +S+ P LD + P G +L + +CN++ + +L
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG---LNLTSLSITHCNLTAVPYLAVRHLV 248
Query: 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKL 246
L ++L N ++ L +L +LQ ++ +L P + L L L + GN+L
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 247 FGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLP 298
+ F ++ +L L L SN L W LNF+ T P
Sbjct: 309 TTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS 121
+ L L+ N + P ++L+ L+ N + F L L +L L DN L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 91
Query: 122 STPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S P +F N KSLTHI L NNP DC
Sbjct: 92 SIPRGAF----DNLKSLTHIWLLNNPWDC 116
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 189 TTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG 248
TT+D G L S+P + Q L DN++ P RLT+L L+L N+L
Sbjct: 12 TTVDCSGKSL-ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 249 SIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYL 286
F L L LSL N+L SIP F NL ++ ++
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82
+ +VP I +T + L L DN + + D RL L RL L NN +P +F+
Sbjct: 21 LASVPTGI--PTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDL-DNNQLTVLPAGVFDK 76
Query: 83 -SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLS 130
++L+ L + N F NL++L + L +N + ++ +LS
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLS 125
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS 121
+ L L+ N + P ++L+ L+ N + F L L +L L DN L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 99
Query: 122 STPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S P +F N KSLTHI L NNP DC
Sbjct: 100 SIPRGAF----DNLKSLTHIWLLNNPWDC 124
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 189 TTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG 248
TT+D G L S+P + Q L DN++ P RLT+L L+L N+L
Sbjct: 20 TTVDCSGKSL-ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 249 SIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYL 286
F L L LSL N+L SIP F NL ++ ++
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 119/260 (45%), Gaps = 37/260 (14%)
Query: 66 LWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPE 125
L+ +NF G +P K++ ++ KN + TF L LQ L L DN LT+
Sbjct: 329 LYSSNFYG-LP-------KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT---- 376
Query: 126 LSFLSSLSNCKSLTHIGLSNNPLDCILPKTSI-GNLSHSLEDFKMHNCNVSGGIPEEISN 184
+ F+ S+ + I LS N L LPK ++ NL H L + ++ N + I +
Sbjct: 377 IHFIPSIPD------IFLSGNKL-VTLPKINLTANLIH-LSENRLENLD----ILYFLLR 424
Query: 185 LTNLTTIDLGGNMLNG-SIPITLSKLQKLQGLRFEDNKLEGSIPDSICR-----LTELYE 238
+ +L + L N + S T S+ L+ L +N L+ + +C L+ L
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 239 LELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNL-NNILYLNFSSNFFTAPL 297
L L N L P FS+L +LR LSL SN LT L+ +L N+ L+ S N AP
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPN 542
Query: 298 PLEIGNLKVLVGMDFSMNNF 317
P +L VL D + N F
Sbjct: 543 PDVFVSLSVL---DITHNKF 559
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS 121
+ L L+ N + P ++L+ L+ N + F L L +L L DN L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 91
Query: 122 STPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S P +F N +SLTHI L NNP DC
Sbjct: 92 SIPRGAF----DNLRSLTHIWLLNNPWDC 116
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 189 TTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG 248
TT+D G L S+P + Q L DN++ P RLT+L L+L N+L
Sbjct: 12 TTVDCSGKSL-ASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 249 SIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYL 286
F L L LSL N+L SIP F NL ++ ++
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82
+ +VP I +T + L L DN + + D RL L RL L NN +P +F+
Sbjct: 21 LASVPTGI--PTTTQVLYLYDNRITKLEPGVFD-RLTQLTRLDL-DNNQLTVLPAGVFDK 76
Query: 83 -SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLS 130
++L+ L + N F NLR+L + L +N + ++ +LS
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLS 125
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 182 ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELE 240
+ LTNLT + L GN L KL L+ L +N+L+ S+PD + +LT L L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLY 139
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
L N+L F L +L L L +N+L S+P
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 185 LTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELGG 243
LTNL + L N L KL L L N+L+ S+P + +LT L L+L
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDN 166
Query: 244 NKLFGSIPACFSNLASLRILSLGSNELTSIP 274
N+L F L L+ LSL N+L S+P
Sbjct: 167 NQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 257 LASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLP----LEIGNLKVLVGMDF 312
L ++R L+LG N+L I L N+ YL + N + LP ++ NLK LV ++
Sbjct: 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVEN 119
Query: 313 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346
+ + + L NL YL+L +N+LQ S+P
Sbjct: 120 QLQSLPDGV---FDKLTNLTYLYLYHNQLQ-SLP 149
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 30/193 (15%)
Query: 72 SGTIPRFIFNASKLS---ILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSF 128
SGT + SK+S L+FS N + + G+L L+ L L N L ELS
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL----KELSK 365
Query: 129 LSSLS-NCKSLTHIGLSNNPL-------DCILPKTSIG-NLSHSLEDFKMHNCNVSGGIP 179
++ ++ KSL + +S N + DC K+ + N+S ++ + C +P
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-----LP 420
Query: 180 EEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSIC-RLTELYE 238
I +DL N + SIP + KL+ LQ L N+L+ S+PD I RLT L +
Sbjct: 421 PRIK------VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472
Query: 239 LELGGNKLFGSIP 251
+ L N S P
Sbjct: 473 IWLHTNPWDCSCP 485
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 174 VSGGIPEEISNLTNLTTIDLGGNMLN--GSIPITLSKLQKLQGLRFEDNKLEGSIPDSIC 231
++ + E +LT L T+ L N L I ++++ LQ L N + C
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 232 RLTE-LYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSS 290
T+ L L + N L +I C +++L L SN++ SIP L + LN +S
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Query: 291 N 291
N
Sbjct: 454 N 454
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
LP ++L +N +IP+ + L L + N F L +LQK+ L+ N
Sbjct: 419 LPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIG 142
S P + +LS N S G
Sbjct: 479 PWDCSCPRIDYLSRWLNKNSQKEQG 503
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 140 HIGLSNNPLDCILPKTSIGNLSHSLE----DFKMHNCNVSGGIPEEISNLTNLTTIDLGG 195
H+ SNN +L T N H E +M+ I E + + +L +D+
Sbjct: 328 HLDFSNN----LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 196 NMLN-GSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACF 254
N ++ S + L L N L +I C + L+L NK+ SIP
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKI-KSIPKQV 440
Query: 255 SNLASLRILSLGSNELTSIP 274
L +L+ L++ SN+L S+P
Sbjct: 441 VKLEALQELNVASNQLKSVP 460
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGL 143
++ +L+ N IP L LQ+L + N L S P+ F SL I L
Sbjct: 422 RIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQL-KSVPDGIF----DRLTSLQKIWL 475
Query: 144 SNNPLDCILPK 154
NP DC P+
Sbjct: 476 HTNPWDCSCPR 486
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 10/133 (7%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNA 82
+ +VP I + +T LEL+ N L + D +L L +L L N ++P +F+
Sbjct: 19 LTSVPTGIPSSAT--RLELESNKLQSLPHGVFD-KLTQLTKLSLSQNQIQ-SLPDGVFDK 74
Query: 83 -SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHI 141
+KL+IL +N F L L++L L N L S P+ F SL I
Sbjct: 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIF----DRLTSLQKI 129
Query: 142 GLSNNPLDCILPK 154
L NP DC P+
Sbjct: 130 WLHTNPWDCSCPR 142
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 173 NVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-C 231
+V GIP ++ T ++L N L KL +L L N+++ S+PD +
Sbjct: 21 SVPTGIP------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFD 73
Query: 232 RLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
+LT+L L L NKL F L L+ L+L +N+L S+P
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSI-CRLTELYELELG 242
LT LT + L N + KL KL L +NKL+ S+P+ + +LT+L EL L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 243 GNKLFGSIPACFSNLASLRILSLGSN 268
N+L F L SL+ + L +N
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 23 IGTVPAAIFN-VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81
+ ++P +F+ ++ L L L N + + D +L L L L N ++P +F+
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLHENKLQ-SLPNGVFD 97
Query: 82 A-SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTH 140
++L L N F L +LQK+ L+ N S P + +LS N S
Sbjct: 98 KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 157
Query: 141 IG 142
G
Sbjct: 158 QG 159
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 110 QKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKM 169
Q++ L+ N + S P SF + C++LT + L +N L I G LE +
Sbjct: 35 QRIFLHGNRI-SHVPAASFRA----CRNLTILWLHSNVLARIDAAAFTGLAL--LEQLDL 87
Query: 170 -HNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPD 228
N + P L L T+ L L P L LQ L +DN L+ D
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 229 SICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLN 287
+ L L L L GN++ F L SL L L N + + P F +L ++ L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 288 FSSNFFTAPLPLE 300
+N +A LP E
Sbjct: 208 LFANNLSA-LPTE 219
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 18/225 (8%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASK-LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLT 120
+R+ L GN S +P F A + L+IL N + F L L++L L DN
Sbjct: 35 QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 121 SSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS--HSLEDFKMHNCNVSGGI 178
S +F L +L H+ C L + G +L+ + + N +
Sbjct: 94 RSVDPATF-HGLGRLHTL-HLD------RCGLQELGPGLFRGLAALQYLYLQD-NALQAL 144
Query: 179 PEE-ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
P++ +L NLT + L GN ++ L L L N++ P + L L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSN----ELTSIPLTFW 278
L L N L + L +L+ L L N + + PL W
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 249
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 44/114 (38%), Gaps = 23/114 (20%)
Query: 27 PAAIFNVSTLKSLELQDNSLFG--------------------SISSIIDVR---LPNLER 63
P ++ L+ L LQDN+L ISS+ + L +L+R
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181
Query: 64 LLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
LLL N + P + +L L N+ S LR LQ LRL DN
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNF-FTAPLP 298
L GN++ A F +L IL L SN L I F L + L+ S N + P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 299 LEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
L L + + P GL L+YL+L N LQ D+F
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 181 EISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELE 240
+ NL NL T+ L N ++ P + L KL+ L N+L+ +P+ + + L EL
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELR 127
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL---TFWNLNNILYLNFS-SNFFTAP 296
+ N++ + F+ L + ++ LG+N L S + F + + Y+ + +N T P
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187
Query: 297 LPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343
L L + N + V + GL NL L L +N +
Sbjct: 188 QGLPPS----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 86 SILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSN 145
++L+ N + F NL+NL L L +N ++ +P + + L + LS
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSK 109
Query: 146 NPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNML------N 199
N L + K + +L++ ++H ++ + L + ++LG N L N
Sbjct: 110 NQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 200 GSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLAS 259
G+ ++KL +R D + +IP + L EL L GNK+ A L +
Sbjct: 165 GA----FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNN 217
Query: 260 LRILSLGSNELTSI 273
L L L N ++++
Sbjct: 218 LAKLGLSFNSISAV 231
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 79/193 (40%), Gaps = 10/193 (5%)
Query: 110 QKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKM 169
Q++ L+ N + S P SF + C++LT + L +N L I G LE +
Sbjct: 34 QRIFLHGNRI-SHVPAASFRA----CRNLTILWLHSNVLARIDAAAFTGLAL--LEQLDL 86
Query: 170 -HNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPD 228
N + P L L T+ L L P L LQ L +DN L+ D
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 229 SICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLN 287
+ L L L L GN++ F L SL L L N + + P F +L ++ L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 288 FSSNFFTAPLPLE 300
+N +A LP E
Sbjct: 207 LFANNLSA-LPTE 218
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 60/171 (35%), Gaps = 29/171 (16%)
Query: 27 PAAIFNVSTLKSLELQDNSLFG--------------------SISSIIDVR---LPNLER 63
P ++ L+ L LQDN+L ISS+ + L +L+R
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 180
Query: 64 LLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSST 123
LLL N + P + +L L N+ S LR LQ LRL DN
Sbjct: 181 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 240
Query: 124 PELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNV 174
+ L + S++ + C LP+ G L + C V
Sbjct: 241 RARPLWAWLQKFRG------SSSEVPCSLPQRLAGRDLKRLAANDLQGCAV 285
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 87/225 (38%), Gaps = 18/225 (8%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASK-LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLT 120
+R+ L GN S +P F A + L+IL N + F L L++L L DN
Sbjct: 34 QRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 92
Query: 121 SSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS--HSLEDFKMHNCNVSGGI 178
S +F L +L H+ C L + G +L+ + + N +
Sbjct: 93 RSVDPATF-HGLGRLHTL-HLD------RCGLQELGPGLFRGLAALQYLYLQD-NALQAL 143
Query: 179 PEE-ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
P++ +L NLT + L GN ++ L L L N++ P + L L
Sbjct: 144 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 203
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSN----ELTSIPLTFW 278
L L N L + L +L+ L L N + + PL W
Sbjct: 204 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW 248
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNF-FTAPLP 298
L GN++ A F +L IL L SN L I F L + L+ S N + P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 299 LEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349
L L + + P GL L+YL+L N LQ D+F
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 148
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 11/167 (6%)
Query: 181 EISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELE 240
+ NL NL T+ L N ++ P + L KL+ L N+L+ +P+ + + L EL
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT--LQELR 127
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL---TFWNLNNILYLNFS-SNFFTAP 296
+ N++ + F+ L + ++ LG+N L S + F + + Y+ + +N T P
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187
Query: 297 LPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343
L L + N + V + GL NL L L +N +
Sbjct: 188 QGLPPS----LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 23/194 (11%)
Query: 86 SILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSN 145
++L+ N + F NL+NL L L +N ++ +P + + L + LS
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSK 109
Query: 146 NPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNML------N 199
N L + K + +L++ ++H ++ + L + ++LG N L N
Sbjct: 110 NQLKELPEK-----MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 200 GSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLAS 259
G+ ++KL +R D + +IP + L EL L GNK+ A L +
Sbjct: 165 GA----FQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNN 217
Query: 260 LRILSLGSNELTSI 273
L L L N ++++
Sbjct: 218 LAKLGLSFNSISAV 231
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 178 IPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
+P+E+SN +LT IDL N ++ + S + +L L N+L P + L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNEL 270
L L GN + F++L++L L++G+N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 177 GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTEL 236
GIP +++ L L GN +P LS + L + +N++ S +T+L
Sbjct: 28 GIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 237 YELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSN 291
L L N+L P F L SLR+LSL N+++ +P F +L+ + +L +N
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 281 NNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 340
++ L N FT +P E+ N K L +D S N S + + L L L YNR
Sbjct: 31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 341 LQGSIPDSF 349
L+ P +F
Sbjct: 90 LRCIPPRTF 98
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 30/115 (26%)
Query: 60 NLERLLLWGNNFSGTIPRFIFNASKLSILEFSKN--------SFSGFI------------ 99
++ L L GN F+ +P+ + N L++++ S N SFS
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 100 ----PNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDC 150
P TF L++L+ L L+ N + S PE +F ++ +L+H+ + NPL C
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAF----NDLSALSHLAIGANPLYC 140
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 263 LSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIP 322
L L N+ T +P N ++ ++ S+N + N+ L+ + S N + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 323 TEIGGLKNLEYLFLGYN 339
GLK+L L L N
Sbjct: 96 RTFDGLKSLRLLSLHGN 112
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N+LT +P N L N+ L N +T P
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 183 SNLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241
L LT +D+ N L S+P+ L L +LQ L + N+L+ P + +L +L L
Sbjct: 97 QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 242 GGNKLFGSIPACFSN-LASLRILSLGSNELTSIPLTFW 278
N+L +PA N L +L L L N L +IP F+
Sbjct: 156 ANNQL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N+LT +P N L N+ L N +T P
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 183 SNLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241
L LT +D+ N L S+P+ L L +LQ L + N+L+ P + +L +L L
Sbjct: 97 QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 242 GGNKLFGSIPACFSN-LASLRILSLGSNELTSIPLTFW 278
N+L +PA N L +L L L N L +IP F+
Sbjct: 156 ANNQL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N+LT +P N L N+ L N +T P
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 183 SNLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241
L LT +D+ N L S+P+ L L +LQ L + N+L+ P + +L +L L
Sbjct: 97 QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 242 GGNKLFGSIPACFSN-LASLRILSLGSNELTSIPLTFW 278
N+L +PA N L +L L L N L +IP F+
Sbjct: 156 ANNQL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N+LT +P N L N+ L N +T P
Sbjct: 157 NNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 183 SNLTNLTTIDLGGNMLNGSIPI-TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241
L LT +D+ N L S+P+ L L +LQ L + N+L+ P + +L +L L
Sbjct: 97 QTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 242 GGNKLFGSIPACFSN-LASLRILSLGSNELTSIPLTFW 278
N+L +PA N L +L L L N L +IP F+
Sbjct: 156 ANNQL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N+LT +P N L N+ L N +T P
Sbjct: 157 NNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 110 QKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKM 169
Q++ L+ N + S P SF S C++LT + L +N L I G LE +
Sbjct: 34 QRIFLHGNRI-SYVPAASFQS----CRNLTILWLHSNALAGIDAAAFTGLTL--LEQLDL 86
Query: 170 -HNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPD 228
N + P L +L T+ L L P L LQ L +DN L+ ++PD
Sbjct: 87 SDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPD 145
Query: 229 SICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYL 286
+ R L L L L GN++ F L SL L L N + + P F +L ++ L
Sbjct: 146 NTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTL 205
Query: 287 NFSSNFFTAPLPLEI 301
+N + LP E+
Sbjct: 206 YLFANNLSM-LPAEV 219
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
L +L+RLLL N+ + P + +L L N+ S LR+LQ LRL DN
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVS 175
+ L + S++ + C LP+ G L + C V+
Sbjct: 235 PWVCDCRARPLWAWLQKFRG------SSSEVPCNLPQRLAGRDLKRLAASDLEGCAVA 286
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTSI-PLTFWNLNNILYLNFSSNF-FTAPLP 298
L GN++ A F + +L IL L SN L I F L + L+ S N P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 299 LEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347
L L + + P GL L+YL+L N LQ ++PD
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPD 145
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIF-NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYD 116
+P L L+L N+ S ++PR IF N KL+ L S N+ +TF +LQ L+L
Sbjct: 116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174
Query: 117 NYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSG 176
N LT LS SL H +S N L + ++ L S + V G
Sbjct: 175 NRLTHV--------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV----VRG 222
Query: 177 GIPEEIS-------NLTN---------LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN 220
+ E++ NLT+ L +DL N L + K+Q+L+ L +N
Sbjct: 223 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
Query: 221 KL 222
+L
Sbjct: 283 RL 284
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 81/193 (41%), Gaps = 12/193 (6%)
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS-STPELSFLSSLSNCKSLTHIG 142
L +L+ +NS F L +L L L+DN+LT + +LS L +
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE------LW 153
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPE-EISNLTNLTTIDLGGNMLNGS 201
L NNP++ I P + + SL + I E L NL ++LG M N
Sbjct: 154 LRNNPIESI-PSYAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG--MCNIK 209
Query: 202 IPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLR 261
L+ L L+ L N P S L+ L +L + +++ F LASL
Sbjct: 210 DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 262 ILSLGSNELTSIP 274
L+L N L+S+P
Sbjct: 270 ELNLAHNNLSSLP 282
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 215 LRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIP 274
L +N ++ D+ L L L+LG N + F+ LASL L L N LT IP
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 275 LTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYL 334
+ + + + L + N + ++ N ++ ++G LK LEY+
Sbjct: 140 ------------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187
Query: 335 FLG 337
G
Sbjct: 188 SEG 190
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N LT +P N L N+ L N +T P
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 62 ERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTS 121
+ L L+ N + P + ++L+ L + N + F L L L L+ N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-K 101
Query: 122 STPELSFLSSLSNCKSLTHIGLSNNPLDC 150
S P + N KSLTHI L NNP DC
Sbjct: 102 SIP----MGVFDNLKSLTHIYLFNNPWDC 126
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 175 SGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFED-NKLEGSIPDSICRL 233
S P + S + TT++ L S+P + ++ L KLE + DS L
Sbjct: 10 SAACPSQCS--CSGTTVNCQERSL-ASVPAGIPTTTQVLHLYINQITKLEPGVFDS---L 63
Query: 234 TELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNF 292
T+L L L N+L F L L L+L N+L SIP+ F NL ++ ++
Sbjct: 64 TQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHI----YL 119
Query: 293 FTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLE 332
F P E ++ L ++ + + S V P GG+ N++
Sbjct: 120 FNNPWDCECSDILYL--KNWIVQHASIVNPLGNGGVDNVK 157
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N LT +P N L N+ L N +T P
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N LT +P N L N+ L N +T P
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 49 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 98
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 99 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 157
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N LT +P N L N+ L N +T P
Sbjct: 158 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 148 LDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLS 207
L ++P T + L+ L+ ++ V G +P L T+DL N L S+P+
Sbjct: 48 LATLMPYTRLTQLN--LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQ 97
Query: 208 KLQKLQGLRFEDNKLEGSIPDSICR-LTELYELELGGNKLFGSIPACFSNLASLRILSLG 266
L L L N+L S+P R L EL EL L GN+L P + L LSL
Sbjct: 98 TLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156
Query: 267 SNELTSIPLTFWN-LNNILYLNFSSN-FFTAP 296
+N LT +P N L N+ L N +T P
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 184 NLTNLTTIDLGGNMLNG-SIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242
N+++L T+D+ N LN + T + + + L N L GS+ C ++ L+L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLH 458
Query: 243 GNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTAPLP 298
N++ SIP ++L +L+ L++ SN+L S+P F L ++ Y+ N + P
Sbjct: 459 NNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 31/186 (16%)
Query: 83 SKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
S + L F++N F+ + L+ LQ L L N L K+ +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL----------------KNFFKVA 396
Query: 143 LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSI 202
L + +S+ L SL H + + E I ++L NML GS+
Sbjct: 397 LMTKNM------SSLETLDVSLNSLNSHAYDRTCAWAESI------LVLNLSSNMLTGSV 444
Query: 203 PITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRI 262
L K++ L +N++ SIP + L L EL + N+L F L SL+
Sbjct: 445 FRCLPP--KVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQY 501
Query: 263 LSLGSN 268
+ L N
Sbjct: 502 IWLHDN 507
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 39 LELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGF 98
L L N L GS+ LP ++L NN +IP+ + + L L + N
Sbjct: 433 LNLSSNMLTGSVFRC----LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Query: 99 IPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTS 156
F L +LQ + L+DN + P + +LS N H G+ N + P ++
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN----KHSGVVRNSAGSVAPDSA 542
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP-ELSFLSSLSNCKSLT 139
N S+L L+ S+ + L +L L L N + S +P S L+SL N ++
Sbjct: 49 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 140 H--IGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNM 197
L + P+ ++ + N++H+ +H+C +P SNLTNL +DL N
Sbjct: 109 TKLASLESFPIGQLITLKKL-NVAHNF----IHSCK----LPAYFSNLTNLVHVDLSYNY 159
Query: 198 LNGSIPITLSKLQKLQGLRFEDNKLEGS------IPDSICRLTELYELELGGNKLFGS-- 249
+ IT++ LQ L+ + L+ S I D + +L+EL L GN F S
Sbjct: 160 IQ---TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN--FNSSN 214
Query: 250 -IPACFSNLASLRILSL 265
+ C NLA L + L
Sbjct: 215 IMKTCLQNLAGLHVHRL 231
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 137 SLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGN 196
S +I LS NPL IL S N S L+ + C + + L +L+ + L GN
Sbjct: 28 STKNIDLSFNPLK-ILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 85
Query: 197 MLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG-SIPACFS 255
+ P + S L L+ L + KL I +L L +L + N + +PA FS
Sbjct: 86 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 145
Query: 256 NLASLRILSLGSNELTSIPL 275
NL +L + L N + +I +
Sbjct: 146 NLTNLVHVDLSYNYIQTITV 165
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 26/197 (13%)
Query: 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTP-ELSFLSSLSNCKSLT 139
N S+L L+ S+ + L +L L L N + S +P S L+SL N ++
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 140 H--IGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNM 197
L + P+ ++ + N++H+ +H+C +P SNLTNL +DL N
Sbjct: 114 TKLASLESFPIGQLITLKKL-NVAHNF----IHSCK----LPAYFSNLTNLVHVDLSYNY 164
Query: 198 LNGSIPITLSKLQKLQGLRFEDNKLEGS------IPDSICRLTELYELELGGNKLFGS-- 249
+ IT++ LQ L+ + L+ S I D + +L+EL L GN F S
Sbjct: 165 IQ---TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN--FNSSN 219
Query: 250 -IPACFSNLASLRILSL 265
+ C NLA L + L
Sbjct: 220 IMKTCLQNLAGLHVHRL 236
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 137 SLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGN 196
S +I LS NPL IL S N S L+ + C + + L +L+ + L GN
Sbjct: 33 STKNIDLSFNPLK-ILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 197 MLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFG-SIPACFS 255
+ P + S L L+ L + KL I +L L +L + N + +PA FS
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 256 NLASLRILSLGSNELTSIPL 275
NL +L + L N + +I +
Sbjct: 151 NLTNLVHVDLSYNYIQTITV 170
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIF-NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYD 116
+P L L+L N+ S ++PR IF N KL+ L S N+ +TF +LQ L+L
Sbjct: 122 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 117 NYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSG 176
N LT LS SL H +S N L + ++ L S + V G
Sbjct: 181 NRLTHV--------DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV----VRG 228
Query: 177 GIPEEIS-------NLTN---------LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN 220
+ E++ NLT+ L +DL N L + K+Q+L+ L +N
Sbjct: 229 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288
Query: 221 KL 222
+L
Sbjct: 289 RL 290
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 26 VPAAIF-NVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIF-NAS 83
+PA + ++ L LEL+ N + S + L NLE + +G+N +PR IF
Sbjct: 138 IPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIE-FGSNKLRQMPRGIFGKMP 194
Query: 84 KLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
KL L + N F L +LQK+ L+ N S P + +LS N S G
Sbjct: 195 KLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 253
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 183 SNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSIC-RLTELYELEL 241
+L NL +I+ G N L K+ KL+ L N+L+ S+PD I RLT L ++ L
Sbjct: 167 DDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWL 225
Query: 242 GGNKLFGSIP 251
N S P
Sbjct: 226 HTNPWDCSCP 235
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 162 HSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITL-SKLQKLQGLRFEDN 220
H L+ F+ ++ ++++ NL+ ++L N+ +P L L+ L+ + F N
Sbjct: 123 HGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLESIEFGSN 180
Query: 221 KLEGSIPDSI-CRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSN 268
KL +P I ++ +L +L L N+L F L SL+ + L +N
Sbjct: 181 KLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 33 VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSK 92
S +K+ +L + +F + S+ +LE+L L N + + + L L
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDT 332
Query: 93 NSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
N F L +LQK+ L+ N S P + +LS N S G
Sbjct: 333 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 382
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 186 TNLTTIDLGGNMLNGSIP------ITLSKLQKL-------QGLRFEDNKLEGSIPDSIC- 231
T++TT+DL GN S+ I +K+Q L G F + PD+
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD--PDNFTF 269
Query: 232 ---RLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLN 287
+ + +L +K+F + + FS+ L L+L NE+ I FW L ++ L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELA 329
Query: 288 FSSN 291
+N
Sbjct: 330 LDTN 333
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 215 LRFEDNKLEGSIPDSIC-RLTELYELELGGNKLFGSIPACFSN----LASLRILSLGSNE 269
L E NKL+ S+P + +LT+L +L L N L S C S SL+ L L N
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL--SFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 270 LTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIG-NLKVLVGMDFSMNNFSGVIPTEIGGL 328
+ ++ F L + +L+F + + +L+ L+ +D S + GL
Sbjct: 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149
Query: 329 KNLEYLFLGYNRLQGS-IPDSF 349
+LE L + N Q + +PD F
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIF 171
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 13/201 (6%)
Query: 23 IGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGN--NFSGTIPRFIF 80
+ +VP I S+ LEL+ N L + D +L L +L L N +F G + F
Sbjct: 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDF 75
Query: 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTH 140
+ L L+ S F+G I + N L++L D + S+ ++S S + ++L +
Sbjct: 76 GTTSLKYLDLS---FNGVITMS-SNFLGLEQLEHLD-FQHSNLKQMSEFSVFLSLRNLIY 130
Query: 141 IGLSNNPLDCILPKTSIGNLSHSLEDFKMH-NCNVSGGIPEEISNLTNLTTIDLGGNMLN 199
+ +S+ I N SLE KM N +P+ + L NLT +DL L
Sbjct: 131 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 200 GSIPITLSKLQKLQGLRFEDN 220
P + L LQ L N
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHN 209
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 45/205 (21%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 50 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 107
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 108 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 195 GNMLNGSIPITLSKLQ---------------------------KLQGLRFEDNKLEGSIP 227
N + L L +L+ L + N+L+ S+P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVP 217
Query: 228 DSIC-RLTELYELELGGNKLFGSIP 251
D I RLT L ++ L N S P
Sbjct: 218 DGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 78/200 (39%), Gaps = 35/200 (17%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 51 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKL- 107
Query: 140 HIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLN 199
+ L N L IG+L E HN S +PE SNLTNL +DL N +
Sbjct: 108 -VALETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 200 GSIPITLSKLQ---------------------------KLQGLRFEDNKLEGSIPDSIC- 231
L L +L+ L + N+L+ S+PD I
Sbjct: 165 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFD 223
Query: 232 RLTELYELELGGNKLFGSIP 251
RLT L ++ L N S P
Sbjct: 224 RLTSLQKIWLHTNPWDCSCP 243
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 45/205 (21%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 51 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 108
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 109 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 159
Query: 195 GNMLNGSIPITLSKLQ---------------------------KLQGLRFEDNKLEGSIP 227
N + L L +L+ L + N+L+ S+P
Sbjct: 160 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVP 218
Query: 228 DSIC-RLTELYELELGGNKLFGSIP 251
D I RLT L ++ L N S P
Sbjct: 219 DGIFDRLTSLQKIWLHTNPWDCSCP 243
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 116 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 169
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 45/205 (21%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 106
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 107 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 195 GNMLNGSIPITLSKLQ---------------------------KLQGLRFEDNKLEGSIP 227
N + L L +L+ L + N+L+ S+P
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVP 216
Query: 228 DSIC-RLTELYELELGGNKLFGSIP 251
D I RLT L ++ L N S P
Sbjct: 217 DGIFDRLTSLQKIWLHTNPWDCSCP 241
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 45/205 (21%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 50 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 107
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 108 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 158
Query: 195 GNMLNGSIPITLSKLQ---------------------------KLQGLRFEDNKLEGSIP 227
N + L L +L+ L + N+L+ S+P
Sbjct: 159 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVP 217
Query: 228 DSIC-RLTELYELELGGNKLFGSIP 251
D I RLT L ++ L N S P
Sbjct: 218 DGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 115 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 55 DVRLPNLERLLLWGN--NFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKL 112
+V LP+LE L L N +F G + F + L L+ S F+G I + N L++L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMS-SNFLGLEQL 398
Query: 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMH-N 171
D + S+ ++S S + ++L ++ +S+ I N SLE KM N
Sbjct: 399 EHLD-FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGN 455
Query: 172 CNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN 220
+P+ + L NLT +DL L P + L LQ L N
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 106
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 107 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 195 GNMLNGSIPITLSKLQKL 212
N + L L ++
Sbjct: 158 SNKIQSIYCTDLRVLHQM 175
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEG--SIPDSICRLTELYELELGGN 244
NL T+DL N L+ + T +L+ LQ L +NK++ S I + L +LEL N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 245 KLFGSIPACFSNLASLRILSLGSNEL-------TSIPLTFWNLNNILYLN--FSSNFFTA 295
++ P CF + L L L + +L + L ++ N+ N S+ T
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 342
L L+ NL +L D S NN + V L LEY FL YN +Q
Sbjct: 242 FLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%)
Query: 186 TNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNK 245
+ LT++D+G N ++ P KL L+ L + N+L + T L EL L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 246 LFGSIPACFSNLASLRILSLGSNELTSIPL 275
+ F +L L L N L+S L
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEG--SIPDSICRLTELYELELGGN 244
NL T+DL N L+ + T +L+ LQ L +NK++ S I + L +LEL N
Sbjct: 132 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 191
Query: 245 KLFGSIPACFSNLASLRILSLGSNEL-------TSIPLTFWNLNNILYLN--FSSNFFTA 295
++ P CF + L L L + +L + L ++ N+ N S+ T
Sbjct: 192 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 251
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 342
L L+ NL +L D S NN + V L LEY FL YN +Q
Sbjct: 252 FLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 120 TSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKT-SIGNLSHSLEDFKMHNCNVSGGI 178
SST + + +++C +H+ L+ P D LP ++ NL+H N +
Sbjct: 6 ASSTTKCTVSHEVADC---SHLKLTQVPDD--LPTNITVLNLTH----------NQLRRL 50
Query: 179 PEE-ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
P + + LT++D+G N ++ P KL L+ L + N+L + T L
Sbjct: 51 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 110
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL 275
EL L N + F +L L L N L+S L
Sbjct: 111 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 148
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 164 LEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE 223
L+ + C + +L++L+T+ L GN + S L LQ L + L
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137
Query: 224 GSIPDSICRLTELYELELGGNKLFG-SIPACFSNLASLRILSLGSNELTSIPLT 276
I L L EL + N + +P FSNL +L L L SN++ SI T
Sbjct: 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Query: 55 DVRLPNLERLLLWGN--NFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKL 112
+V LP+LE L L N +F G + F L L+ S F+G I + N L++L
Sbjct: 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVITMS-SNFLGLEQL 422
Query: 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMH-N 171
D + S+ ++S S + ++L ++ +S+ I N SLE KM N
Sbjct: 423 EHLD-FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--NGIFNGLSSLEVLKMAGN 479
Query: 172 CNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN 220
+P+ + L NLT +DL L P + L LQ L N
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 80 FNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139
F+ +L +L+ S+ + +L +L L L N + S L S LS+ + L
Sbjct: 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLV 130
Query: 140 HI-----GLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLG 194
+ L N P IG+L E HN S +PE SNLTNL +DL
Sbjct: 131 AVETNLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Query: 195 GNMLNGSIPITLSKLQKL 212
N + L L ++
Sbjct: 182 SNKIQSIYCTDLRVLHQM 199
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEG--SIPDSICRLTELYELELGGN 244
NL T+DL N L+ + T +L+ LQ L +NK++ S I + L +LEL N
Sbjct: 127 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 186
Query: 245 KLFGSIPACFSNLASLRILSLGSNEL-------TSIPLTFWNLNNILYLN--FSSNFFTA 295
++ P CF + L L L + +L + L ++ N+ N S+ T
Sbjct: 187 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 246
Query: 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 342
L L+ NL +L D S NN + V L LEY FL YN +Q
Sbjct: 247 FLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 120 TSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKT-SIGNLSHSLEDFKMHNCNVSGGI 178
SST + + +++C +H+ L+ P D LP ++ NL+H N +
Sbjct: 1 ASSTTKCTVSHEVADC---SHLKLTQVPDD--LPTNITVLNLTH----------NQLRRL 45
Query: 179 PEE-ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237
P + + LT++D+G N ++ P KL L+ L + N+L + T L
Sbjct: 46 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 105
Query: 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL 275
EL L N + F +L L L N L+S L
Sbjct: 106 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 143
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
LEFS+N F L +LQK+ L+ N S P + +LS N S G
Sbjct: 282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 336
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Query: 33 VSTLKSLELQDNSLFGSISSIIDVR-LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFS 91
+ L+ L+L + + S + ++ L +L+ L L N G + +L +L+ +
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 92 KNSFSGFIPNT-FGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPL-D 149
P++ F NL L+ L L L +S L L+ + L H+ L N D
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHL-----LAGLQDLRHLNLQGNSFQD 462
Query: 150 CILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKL 209
+ KT++ + SLE + +CN+ + L N+ +DL N L G LS L
Sbjct: 463 GSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
Query: 210 QKL 212
+ L
Sbjct: 523 KGL 525
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKL 246
NL +DL N L+ S LQ L+ L +N + ++ + +L +L L N++
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
Query: 247 FGSIPACF----SNLASLRILSLGSNELTSIPLT 276
P + L L +L L SN+L +PLT
Sbjct: 149 -SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 33 VSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIF-NASKLSILEFS 91
++ L SL L N L ISS V +PNL L L N+ T+ F+F + L +L
Sbjct: 63 LTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120
Query: 92 KNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPEL 126
N N F ++ LQKL L N ++ EL
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 26 VPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKL 85
VP ++ + + L L+L N+L + RL NL LLL N+ + L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 86 SILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLT 120
L+ S N F +L+ L+ L LY+N++
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 58 LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117
LP L+ L + N +F L +++ S+N F L +LQK+ L+ N
Sbjct: 450 LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 118 YLTSSTPELSFLSSLSNCKSLTHIG 142
S P + +LS N S G
Sbjct: 508 PWDCSCPRIDYLSRWLNKNSQKEQG 532
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 99 IPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIG 158
+P + NL+NL+ L++ ++ L++ P + L L L N P I
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP--------PIF 249
Query: 159 NLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKL 209
L+ + +C+ +P +I LT L +DL G + +P +++L
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 177 GIPEEISNL-TNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTE 235
G+ E +NL +T I L N + P S +KL+ + +N++ PD+ L
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 236 LYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFT 294
L L L GNK+ + F L SL++L L +N++ + + F +L+N+ L+ N
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 295 APLPLEIGNLKVLVGMDFSMNNF 317
L+ + M + N F
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 200 GSIP-ITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN------KLFG 248
G+ P ++L+ ++ GL E G +PD+I +LTEL L LG + +LFG
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIG 142
L +L+ S+N F L +LQK+ L+ N S P + +LS N S G
Sbjct: 475 LLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 532
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 2/143 (1%)
Query: 177 GIPEEISNL-TNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTE 235
G+ E +NL +T I L N + P S +KL+ + +N++ PD+ L
Sbjct: 22 GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 236 LYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFT 294
L L L GNK+ + F L SL++L L +N++ + + F +L+N+ L+ N
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 295 APLPLEIGNLKVLVGMDFSMNNF 317
L+ + M + N F
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 36 LKSLELQDNSLFGSISSIIDVR-LPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNS 94
L++L+L N + S + ++ L +L+ L L N G + +L +L+ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 95 FSGFIPNT-FGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPL-DCIL 152
P + F NL LQ L L +L +S L L+ L H+ L N D +
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHL-----LAGLPVLRHLNLKGNHFQDGTI 463
Query: 153 PKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQ 210
KT++ SLE + +C + + +L ++ +DL N L +LS L+
Sbjct: 464 TKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLK 521
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 28 AAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87
A + N++ + LEL N L ++S+I L +++ L L + P + S L +
Sbjct: 79 APLKNLTKITELELSGNPL-KNVSAI--AGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133
Query: 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNP 147
L N + P L NLQ YL+ ++S L+ L+N LT + +N
Sbjct: 134 LYLDLNQITNISP--LAGLTNLQ-------YLSIGNAQVSDLTPLANLSKLTTLKADDNK 184
Query: 148 LDCILPKTSIGNL 160
+ I P S+ NL
Sbjct: 185 ISDISPLASLPNL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,562,635
Number of Sequences: 62578
Number of extensions: 386426
Number of successful extensions: 1462
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 370
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)