Query 038106
Match_columns 349
No_of_seqs 187 out of 2777
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 07:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038106.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038106hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.4E-37 1.2E-41 298.9 23.8 336 2-347 85-446 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-36 2.3E-41 296.8 23.5 339 2-348 180-566 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.9E-35 6.2E-40 250.3 4.3 336 5-349 97-436 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.9E-34 2.1E-38 241.0 3.8 331 2-341 117-451 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.4E-31 7.4E-36 227.9 -2.2 327 2-346 47-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.7E-30 3.8E-35 223.6 -4.7 332 2-349 24-358 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 4.2E-30 9E-35 209.8 -5.9 329 2-342 83-541 (565)
8 PLN03210 Resistant to P. syrin 99.9 5.8E-23 1.2E-27 201.4 24.0 320 4-340 552-904 (1153)
9 PLN03210 Resistant to P. syrin 99.9 3.8E-22 8.3E-27 195.7 23.6 302 25-347 549-887 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 3.1E-25 6.7E-30 181.5 -3.5 305 2-318 198-541 (565)
11 KOG0618 Serine/threonine phosp 99.9 7.8E-24 1.7E-28 189.8 -5.2 320 7-347 42-424 (1081)
12 KOG0618 Serine/threonine phosp 99.8 1.5E-22 3.2E-27 181.8 -1.4 292 34-339 219-510 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 3.4E-19 7.4E-24 163.8 15.1 264 11-325 202-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 5.6E-19 1.2E-23 162.4 16.2 263 34-347 201-463 (788)
15 KOG4237 Extracellular matrix p 99.8 1.1E-21 2.5E-26 160.4 -5.0 253 11-269 68-357 (498)
16 cd00116 LRR_RI Leucine-rich re 99.8 5E-20 1.1E-24 158.1 2.8 110 232-341 191-319 (319)
17 cd00116 LRR_RI Leucine-rich re 99.8 5E-20 1.1E-24 158.0 1.2 280 14-316 2-318 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 2E-17 4.3E-22 153.1 13.2 248 10-295 178-429 (754)
19 KOG4237 Extracellular matrix p 99.7 5.5E-20 1.2E-24 150.6 -3.8 131 34-172 67-198 (498)
20 PRK15370 E3 ubiquitin-protein 99.7 4.7E-17 1E-21 150.6 12.9 246 60-342 179-428 (754)
21 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.9E-22 120.9 -4.5 161 163-328 34-195 (264)
22 KOG0617 Ras suppressor protein 99.5 1.4E-16 3E-21 116.4 -3.3 158 184-347 31-190 (264)
23 KOG1909 Ran GTPase-activating 99.5 3.9E-15 8.5E-20 120.6 0.5 247 57-317 28-310 (382)
24 KOG1909 Ran GTPase-activating 99.5 1.5E-14 3.2E-19 117.4 1.3 242 6-270 26-310 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.3 1.3E-12 2.7E-17 123.5 5.5 106 10-117 545-652 (889)
26 KOG3207 Beta-tubulin folding c 99.3 1.7E-13 3.6E-18 114.5 -0.3 213 80-296 118-341 (505)
27 KOG3207 Beta-tubulin folding c 99.3 7.5E-13 1.6E-17 110.6 0.4 211 104-318 118-339 (505)
28 PF14580 LRR_9: Leucine-rich r 99.2 1.8E-11 4E-16 93.1 4.6 125 184-312 17-147 (175)
29 KOG1259 Nischarin, modulator o 99.2 4.6E-12 9.9E-17 101.2 0.9 132 207-343 281-413 (490)
30 KOG1259 Nischarin, modulator o 99.2 8.9E-12 1.9E-16 99.6 1.4 133 182-319 280-413 (490)
31 PF14580 LRR_9: Leucine-rich r 99.1 6.3E-11 1.4E-15 90.2 5.5 123 209-335 18-146 (175)
32 KOG2120 SCF ubiquitin ligase, 99.1 3.9E-12 8.5E-17 101.4 -4.4 157 60-220 186-348 (419)
33 KOG4658 Apoptotic ATPase [Sign 99.1 1.4E-10 3E-15 109.9 4.9 325 10-348 523-866 (889)
34 KOG2120 SCF ubiquitin ligase, 99.1 4.2E-12 9.1E-17 101.2 -4.5 178 162-339 185-373 (419)
35 COG4886 Leucine-rich repeat (L 99.1 2.4E-10 5.1E-15 101.0 5.9 151 187-343 141-291 (394)
36 KOG4341 F-box protein containi 99.0 1E-11 2.3E-16 103.4 -4.1 133 184-316 292-437 (483)
37 PF13855 LRR_8: Leucine rich r 99.0 6.9E-10 1.5E-14 69.5 4.2 61 281-341 1-61 (61)
38 COG4886 Leucine-rich repeat (L 98.9 2.3E-09 4.9E-14 94.8 7.3 150 163-318 141-290 (394)
39 PLN03150 hypothetical protein; 98.9 5.5E-09 1.2E-13 96.9 8.8 112 235-346 419-532 (623)
40 KOG0532 Leucine-rich repeat (L 98.9 6.8E-11 1.5E-15 102.4 -3.9 194 136-340 75-271 (722)
41 COG5238 RNA1 Ran GTPase-activa 98.9 4E-10 8.6E-15 89.0 0.3 244 6-272 26-317 (388)
42 PLN03150 hypothetical protein; 98.8 5.1E-09 1.1E-13 97.1 5.6 91 259-349 419-510 (623)
43 KOG0532 Leucine-rich repeat (L 98.8 5.5E-10 1.2E-14 96.9 -1.1 158 2-172 113-270 (722)
44 PF13855 LRR_8: Leucine rich r 98.8 8.4E-09 1.8E-13 64.5 4.3 60 10-70 1-60 (61)
45 COG5238 RNA1 Ran GTPase-activa 98.8 5.9E-10 1.3E-14 88.1 -1.4 248 57-318 28-316 (388)
46 KOG2982 Uncharacterized conser 98.8 1.4E-09 3E-14 87.1 0.5 201 141-342 50-262 (418)
47 KOG4341 F-box protein containi 98.7 2.6E-10 5.6E-15 95.2 -4.6 298 11-311 139-458 (483)
48 KOG2982 Uncharacterized conser 98.7 2.4E-09 5.1E-14 85.8 0.6 223 84-311 46-285 (418)
49 KOG0531 Protein phosphatase 1, 98.7 3E-09 6.4E-14 94.3 -0.2 35 260-294 234-268 (414)
50 KOG0531 Protein phosphatase 1, 98.5 2.1E-08 4.6E-13 88.9 -0.3 84 57-150 93-176 (414)
51 KOG3665 ZYG-1-like serine/thre 98.4 5.9E-08 1.3E-12 90.0 0.8 138 10-149 122-263 (699)
52 KOG1859 Leucine-rich repeat pr 98.3 5.6E-09 1.2E-13 93.4 -7.8 123 213-341 167-291 (1096)
53 KOG1859 Leucine-rich repeat pr 98.3 9.7E-09 2.1E-13 92.0 -7.4 126 163-295 165-293 (1096)
54 KOG4579 Leucine-rich repeat (L 98.2 7.6E-08 1.6E-12 68.3 -2.1 106 188-295 29-137 (177)
55 KOG3665 ZYG-1-like serine/thre 98.2 3.1E-07 6.8E-12 85.3 0.9 153 186-340 122-286 (699)
56 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.5E-12 67.4 -2.6 86 232-318 51-136 (177)
57 PRK15386 type III secretion pr 98.0 4.2E-05 9.2E-10 66.0 9.9 131 162-315 52-187 (426)
58 PF12799 LRR_4: Leucine Rich r 98.0 7.7E-06 1.7E-10 46.8 3.3 34 260-293 3-36 (44)
59 PF12799 LRR_4: Leucine Rich r 98.0 3.8E-06 8.3E-11 48.0 2.0 36 282-318 2-37 (44)
60 KOG1644 U2-associated snRNP A' 98.0 1.7E-05 3.8E-10 60.5 6.0 101 188-290 44-149 (233)
61 PRK15386 type III secretion pr 98.0 7.6E-05 1.7E-09 64.5 10.0 55 105-172 50-104 (426)
62 KOG1947 Leucine rich repeat pr 97.9 2.8E-06 6E-11 77.4 0.3 37 82-118 242-280 (482)
63 KOG1644 U2-associated snRNP A' 97.8 3.3E-05 7.1E-10 59.0 5.2 106 163-270 43-152 (233)
64 PF13306 LRR_5: Leucine rich r 97.7 0.00013 2.8E-09 53.4 6.8 106 5-116 7-112 (129)
65 PF13306 LRR_5: Leucine rich r 97.7 9.7E-05 2.1E-09 54.0 5.6 59 182-242 8-66 (129)
66 KOG1947 Leucine rich repeat pr 97.6 4.2E-06 9.1E-11 76.2 -3.0 60 162-221 243-306 (482)
67 KOG2123 Uncharacterized conser 97.5 2.2E-06 4.7E-11 68.6 -5.1 99 209-311 18-123 (388)
68 KOG2123 Uncharacterized conser 97.4 9.1E-06 2E-10 65.1 -3.3 80 186-269 19-99 (388)
69 KOG2739 Leucine-rich acidic nu 97.4 5.7E-05 1.2E-09 60.1 1.1 83 211-295 44-130 (260)
70 KOG2739 Leucine-rich acidic nu 97.1 0.00036 7.8E-09 55.7 2.3 63 183-245 62-127 (260)
71 KOG4308 LRR-containing protein 96.5 3.5E-06 7.6E-11 75.1 -14.5 333 12-346 89-477 (478)
72 PF00560 LRR_1: Leucine Rich R 96.2 0.0018 3.9E-08 30.7 0.5 19 330-349 1-19 (22)
73 KOG3864 Uncharacterized conser 95.8 0.0016 3.5E-08 50.0 -0.9 83 234-316 101-187 (221)
74 KOG4308 LRR-containing protein 95.7 4.8E-05 1E-09 68.0 -11.0 162 181-342 110-303 (478)
75 PF13504 LRR_7: Leucine rich r 95.4 0.0083 1.8E-07 26.3 1.0 14 329-342 1-14 (17)
76 PF00560 LRR_1: Leucine Rich R 95.3 0.014 3E-07 27.6 1.6 20 306-326 1-20 (22)
77 KOG3864 Uncharacterized conser 95.2 0.0032 6.8E-08 48.5 -1.1 33 83-115 151-184 (221)
78 KOG0473 Leucine-rich repeat pr 91.5 0.0061 1.3E-07 48.1 -5.2 87 230-318 38-124 (326)
79 PF13516 LRR_6: Leucine Rich r 90.5 0.063 1.4E-06 25.8 -0.4 12 60-71 3-14 (24)
80 smart00370 LRR Leucine-rich re 89.6 0.26 5.6E-06 24.2 1.5 14 329-342 2-15 (26)
81 smart00369 LRR_TYP Leucine-ric 89.6 0.26 5.6E-06 24.2 1.5 14 329-342 2-15 (26)
82 smart00364 LRR_BAC Leucine-ric 87.0 0.46 9.9E-06 23.4 1.3 18 329-347 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 84.8 0.015 3.3E-07 46.0 -6.9 89 205-295 37-125 (326)
84 smart00367 LRR_CC Leucine-rich 82.5 0.86 1.9E-05 22.3 1.2 13 328-340 1-13 (26)
85 smart00368 LRR_RI Leucine rich 74.6 2.6 5.5E-05 21.1 1.5 14 329-342 2-15 (28)
86 KOG4242 Predicted myosin-I-bin 68.6 52 0.0011 29.8 8.9 33 187-219 355-389 (553)
87 smart00365 LRR_SD22 Leucine-ri 67.3 4.8 0.0001 19.8 1.5 14 329-342 2-15 (26)
88 KOG3763 mRNA export factor TAP 66.5 3.7 8E-05 37.3 1.7 65 32-96 216-283 (585)
89 KOG3763 mRNA export factor TAP 64.8 2.4 5.3E-05 38.4 0.3 86 231-318 215-312 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-37 Score=298.87 Aligned_cols=336 Identities=36% Similarity=0.526 Sum_probs=219.2
Q ss_pred CChhhhccccccEEecCCccccCccchhhc-cccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIF-NVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIF 80 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (349)
+++++..+++|++|++++|++.+.+|..+. .+.+|++|++++|.+.+..+. ..+++|++|++++|.+....|..+.
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHh
Confidence 456788999999999999998877776544 888999999998887655554 2577888888888887767777788
Q ss_pred cCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc
Q 038106 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL 160 (349)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 160 (349)
.+++|++|++++|.+....+..+.++++|++|++++|.+....+. .+..+++|++|++++|.+....+. .+..+
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l 235 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-----ELGQMKSLKWIYLGYNNLSGEIPY-EIGGL 235 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-----HHcCcCCccEEECcCCccCCcCCh-hHhcC
Confidence 888888888888877766777777888888888887776543322 355666777777777666544333 22332
Q ss_pred ccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEE
Q 038106 161 SHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELE 240 (349)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 240 (349)
.+++.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 236 -~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 236 -TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred -CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 2566666666666655565666666666666666665555555555556666666666655555555555556666666
Q ss_pred cCCCccCCCChhhhhCCCCCceEecCCccCCc-CCcccccCCCccEEE------------------------ecCCcCCC
Q 038106 241 LGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPLTFWNLNNILYLN------------------------FSSNFFTA 295 (349)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~------------------------l~~~~~~~ 295 (349)
+.+|.+....+..+..+++|+.|++++|.+.. +|..+..+++|+.|+ +++|.+.+
T Consensus 315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~ 394 (968)
T PLN00113 315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG 394 (968)
T ss_pred CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc
Confidence 66555554445555555555555555555543 444444444444444 44444444
Q ss_pred CCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 296 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
..+..+..+++|+.|++++|.+.+..|..+..++.|+.+++++|++++.+|.
T Consensus 395 ~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446 (968)
T ss_pred cCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence 4455555566666666666666666666666667777777777776665554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-36 Score=296.78 Aligned_cols=339 Identities=32% Similarity=0.478 Sum_probs=194.6
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+....+..+. .+++|++|++++|.+....|..+.+
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhC
Confidence 456677777777777777777777777777777777777777776555555554 6777777777777666566666666
Q ss_pred CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcc
Q 038106 82 ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS 161 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 161 (349)
+++|++|++++|.+.+..+..+.++++|++|++++|.+....+. .+..+++|+.|++++|.+....+. .+..+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l- 331 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-----LVIQLQNLEILHLFSNNFTGKIPV-ALTSL- 331 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-----hHcCCCCCcEEECCCCccCCcCCh-hHhcC-
Confidence 77777777777666555555666666666666666655433221 233444455555544444332221 11111
Q ss_pred cccCeeeecCcccccCcchhccCCCC------------------------CCEEEcCCccCCCccchhccccCCCCeeec
Q 038106 162 HSLEDFKMHNCNVSGGIPEEISNLTN------------------------LTTIDLGGNMLNGSIPITLSKLQKLQGLRF 217 (349)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~l~~~~~------------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 217 (349)
++++.|++++|.+.+..|..+..+++ |+.|++++|.+.+..+..+..+++|+.|++
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence 13344444444333333333333333 333333333333333333444445555555
Q ss_pred CCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCC-----------------------CCceEecCCccCCc-C
Q 038106 218 EDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLA-----------------------SLRILSLGSNELTS-I 273 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----------------------~L~~L~l~~~~~~~-~ 273 (349)
++|.+++..|..+..+++|+.|++++|.+....+..+..++ +|+.|++++|++.. .
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~ 491 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV 491 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence 55544444444444444555555544444433333333333 44444555554443 4
Q ss_pred CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCCC
Q 038106 274 PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDS 348 (349)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~ 348 (349)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..
T Consensus 492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 445556667777777777776666666777777777777777777777777777777777777777777777754
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-35 Score=250.30 Aligned_cols=336 Identities=23% Similarity=0.281 Sum_probs=250.0
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
.|.++++|+.+++..|.++ .+|....-..+|+.|+|.+|.|.....+.. ..++.|+.|+++.|.+....-..|..-.+
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L-~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEEL-SALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHH-HhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 3567777777777777665 666655556667777777777644333333 36778888888888777544445555577
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCccccc
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSL 164 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 164 (349)
+++|++++|+|++.....|..+.+|-.|.++.|.++..+.. .+.++++|+.|++..|.+...... .+.+++ ++
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-----~Fk~L~~L~~LdLnrN~irive~l-tFqgL~-Sl 247 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-----SFKRLPKLESLDLNRNRIRIVEGL-TFQGLP-SL 247 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHH-----Hhhhcchhhhhhccccceeeehhh-hhcCch-hh
Confidence 88888888888877777788888888888888888887765 477788888888888877644333 444444 77
Q ss_pred CeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCC
Q 038106 165 EDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGN 244 (349)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 244 (349)
+.+.+..|.+......+|..+.++++|+++.|++...-..++.++..|+.|++++|.+....+.....+++|++|+++.|
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 78888887777655566777888888888888887666677778888888888888887777777777888888888888
Q ss_pred ccCCCChhhhhCCCCCceEecCCccCCcCCc-ccccCCCccEEEecCCcCCC---CCCccccccccccEEEccCCeeeec
Q 038106 245 KLFGSIPACFSNLASLRILSLGSNELTSIPL-TFWNLNNILYLNFSSNFFTA---PLPLEIGNLKVLVGMDFSMNNFSGV 320 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~ 320 (349)
.++......+..+..|++|++++|.+..+.+ .|.++++|++|+|+.|.+.- +....+..+++|+.|++.||++..+
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 8877777778888888888888888877543 56778888888888886543 2444566788888888888888855
Q ss_pred cCcccccCCCCceEecCCccccCCCCCCC
Q 038106 321 IPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349 (349)
Q Consensus 321 ~~~~l~~~~~L~~l~l~~~~~~~~~p~~~ 349 (349)
.-.++..++.|++|+|.+|+|..+=|+.|
T Consensus 408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred chhhhccCcccceecCCCCcceeeccccc
Confidence 55788888888888888888876666655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=9.9e-34 Score=241.02 Aligned_cols=331 Identities=22% Similarity=0.244 Sum_probs=285.0
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
||..-+...+|+.|++.+|.+...-.+.+..++.|+.|||+.|.+....-.. +..-.++++|++++|.|+..-...|..
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s-fp~~~ni~~L~La~N~It~l~~~~F~~ 195 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS-FPAKVNIKKLNLASNRITTLETGHFDS 195 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC-CCCCCCceEEeeccccccccccccccc
Confidence 4544555567999999999998888889999999999999999884443333 335578999999999999887888989
Q ss_pred CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcc
Q 038106 82 ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS 161 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 161 (349)
+.+|-.|.++.|+++...+..|.++++|+.|++..|.+.-... ..+..+++|+.|.+.+|.+.......++. .
T Consensus 196 lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~-----ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~--l 268 (873)
T KOG4194|consen 196 LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG-----LTFQGLPSLQNLKLQRNDISKLDDGAFYG--L 268 (873)
T ss_pred cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh-----hhhcCchhhhhhhhhhcCcccccCcceee--e
Confidence 9999999999999998888899999999999999998754321 24788999999999999987654443333 4
Q ss_pred cccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEc
Q 038106 162 HSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELEL 241 (349)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 241 (349)
++++.|++..|.+...-..++..++.|+.|+++.|.+....+..+..+++|+.|+++.|.++...+..|..+..|++|.+
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 68999999999998777778999999999999999998878888889999999999999999888889999999999999
Q ss_pred CCCccCCCChhhhhCCCCCceEecCCccCC----cCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCee
Q 038106 242 GGNKLFGSIPACFSNLASLRILSLGSNELT----SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNF 317 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 317 (349)
++|.+...-..+|..+++|+.|++++|.+. +.+..|.++++|+.|++.||++..+...++..+++|+.|+|.+|.+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 999987666677889999999999999764 4566788899999999999999998788899999999999999999
Q ss_pred eeccCcccccCCCCceEecCCccc
Q 038106 318 SGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 318 ~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
..+.+.+|..+ +|++|.++.-.+
T Consensus 429 aSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 429 ASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eeecccccccc-hhhhhhhcccce
Confidence 99999999988 899888765443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.4e-31 Score=227.88 Aligned_cols=327 Identities=28% Similarity=0.373 Sum_probs=248.3
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceec-cccCccccccCCcccEEeccCCcCCCccchhhc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLF-GSISSIIDVRLPNLERLLLWGNNFSGTIPRFIF 80 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (349)
+|+.++.+.+|+.|+++.|+++ .+...++.+|.|+.+.++.|.+. ..+|..++ ++..|..|++++|.+. +.|..+.
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE 123 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLE 123 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhh
Confidence 5666677777777777776665 34444666777777777776653 33555665 7888888888888776 6777777
Q ss_pred cCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc
Q 038106 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL 160 (349)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 160 (349)
..+++-.|++++|.|.++....+.++..|-.|++++|.+...|+. ...+.+|++|.+++|.+... -+.++
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ------~RRL~~LqtL~Ls~NPL~hf----QLrQL 193 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ------IRRLSMLQTLKLSNNPLNHF----QLRQL 193 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH------HHHHhhhhhhhcCCChhhHH----HHhcC
Confidence 777888888888888766656677778888888888888777765 56677888888888876532 22233
Q ss_pred cc--ccCeeeecCcccc-cCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCccc
Q 038106 161 SH--SLEDFKMHNCNVS-GGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELY 237 (349)
Q Consensus 161 ~~--~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 237 (349)
|+ .++.|.+++..-+ ..+|..+..+.||..+|++.|.+. ..|+.+..+++|+.|.+++|.+++ +........+|+
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lE 271 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLE 271 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhh
Confidence 32 5667777776544 456777888888999999988887 677788888899999999998873 333445667889
Q ss_pred EEEcCCCccCCCChhhhhCCCCCceEecCCccC--CcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCC
Q 038106 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNEL--TSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 238 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (349)
+|+++.|+++ ..|.++.+++.|+.|...+|++ ..+|..++.+.+|+.+..++|.+.- .|+.+..|+.|+.|.++.|
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhccccc
Confidence 9999999887 6788888899999999988865 4588888888889999998888765 7888999999999999999
Q ss_pred eeeeccCcccccCCCCceEecCCccccCCCC
Q 038106 316 NFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 316 ~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
++. .+|.++--++.|+.|+++.|+=.-..|
T Consensus 350 rLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 887 688889889999999999998543444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.7e-30 Score=223.56 Aligned_cols=332 Identities=26% Similarity=0.426 Sum_probs=204.6
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCC-ccchhhc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSG-TIPRFIF 80 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~ 80 (349)
+|.....|+.++.|.+..+++. .+|+.++.+.+|++|.+++|++.....+- ..+|.|+.+.+.+|.+.. ..|..+.
T Consensus 24 FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGEL--s~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 24 FPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGEL--SDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred CchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhh--ccchhhHHHhhhccccccCCCCchhc
Confidence 4445555555555555555543 55555555555555655555553322221 245555555555554432 3445555
Q ss_pred cCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCc
Q 038106 81 NASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNL 160 (349)
Q Consensus 81 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 160 (349)
.+..|..|++++|.+. ..|..+....++-.|++++|.+.++|... +.++.-|-.|+++.|++....|. +..+
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~l-----finLtDLLfLDLS~NrLe~LPPQ--~RRL 172 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSL-----FINLTDLLFLDLSNNRLEMLPPQ--IRRL 172 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchH-----HHhhHhHhhhccccchhhhcCHH--HHHH
Confidence 5566666666666555 44555555555666666666655555432 34455555556666655433221 1111
Q ss_pred ccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCC-CccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEE
Q 038106 161 SHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLN-GSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYEL 239 (349)
Q Consensus 161 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 239 (349)
..+++|.+++|.+....-..+..++.|+.|.+++.+-+ ..+|..+-++.+|+.++++.|.+. .+|..+..+++|+.|
T Consensus 173 -~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL 250 (1255)
T KOG0444|consen 173 -SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL 250 (1255)
T ss_pred -hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence 25566666666655333233444555666666655433 345556666677777777777776 567777777777777
Q ss_pred EcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCC-CCccccccccccEEEccCCeee
Q 038106 240 ELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAP-LPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
++++|.++ ..........+|++|++++|+++.+|.++..+++|+.|.+.+|+++-+ +|..++++.+|+.+..++|.+.
T Consensus 251 NLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 251 NLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred ccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 77777765 333344455677777788777777887777788888888888866543 5667788888888888888776
Q ss_pred eccCcccccCCCCceEecCCccccCCCCCCC
Q 038106 319 GVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 349 (349)
Q Consensus 319 ~~~~~~l~~~~~L~~l~l~~~~~~~~~p~~~ 349 (349)
.+|.++..|+.|+.|.|+.|.+. .+|+++
T Consensus 330 -lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 330 -LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred -cCchhhhhhHHHHHhccccccee-echhhh
Confidence 78888999999999999999975 577753
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=4.2e-30 Score=209.80 Aligned_cols=329 Identities=29% Similarity=0.470 Sum_probs=190.7
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
+|++++++..++.++.+.+++. .+|+...+.+.++.++++.|.+.. .+..+. .+-.|+.++...|.+. ..|.++..
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~ 158 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIG-RLLDLEDLDATNNQIS-SLPEDMVN 158 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHH-HHhhhhhhhccccccc-cCchHHHH
Confidence 3444445555555555444443 444444444555555555544422 222222 3444444444444443 33333444
Q ss_pred CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccch----------------hcccccCCCCCcEEeCCC
Q 038106 82 ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELS----------------FLSSLSNCKSLTHIGLSN 145 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~l~~~~~L~~L~l~~ 145 (349)
+.++..+++.++.+....++.+. |.+|++++...|.+...|++.. ++..+.+|..|+.+.++.
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred HHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc
Confidence 44444444444444332222222 4555555555555544444310 011244444555555555
Q ss_pred CccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCC--
Q 038106 146 NPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLE-- 223 (349)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-- 223 (349)
|.+. ..+..-...+ .++..|+++.+.+. ..|..+..+.+|+.||+++|.++ ..+..++++ +|+.|.+.||.+.
T Consensus 238 N~i~-~lpae~~~~L-~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 238 NQIE-MLPAEHLKHL-NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred cHHH-hhHHHHhccc-ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence 4443 2222222233 26777788888776 55666777777888888888776 444445554 5555555554331
Q ss_pred --------------------------------------------------------------------------------
Q 038106 224 -------------------------------------------------------------------------------- 223 (349)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (349)
T Consensus 313 Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEE
Confidence
Q ss_pred --------------------------------CCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCC
Q 038106 224 --------------------------------GSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELT 271 (349)
Q Consensus 224 --------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (349)
+..+..++.+++|..|++++|.+. ..|..+..+..|+.+++++|.|+
T Consensus 393 VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 393 VNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred EecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 223334455566666666666554 44555566666777777777777
Q ss_pred cCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCcccc
Q 038106 272 SIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 272 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~ 342 (349)
.+|..+.....++.+-.++|++....+..+.++.+|.+||+.+|.+. .+|..+++|.+|++|+++||+++
T Consensus 472 ~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77777666667777777777887766666889999999999999998 78999999999999999999997
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.8e-23 Score=201.43 Aligned_cols=320 Identities=23% Similarity=0.237 Sum_probs=174.0
Q ss_pred hhhhccccccEEecCCcc------ccCccchhhcccc-ccceeeccCceeccccCccccccCCcccEEeccCCcCCCccc
Q 038106 4 PEIGNLRNLERLGLGLNK------LIGTVPAAIFNVS-TLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIP 76 (349)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 76 (349)
.+|..|++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+ ...|..+ .+.+|+.|+++++.+. ..+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC--CccCCcEEECcCcccc-ccc
Confidence 357777777777775432 1123444444432 355555555544 2333322 2445555555555443 334
Q ss_pred hhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCcc
Q 038106 77 RFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTS 156 (349)
Q Consensus 77 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 156 (349)
..+..+++|+.++++++......+ .+..+++|+.|++++|......+ ..+..+++|+.|++++|......|...
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp-----~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELP-----SSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccc-----hhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 444445555555555443221222 23444555555555443221111 123344445555554443222222111
Q ss_pred ------------------ccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCC-------ccchhccccCC
Q 038106 157 ------------------IGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNG-------SIPITLSKLQK 211 (349)
Q Consensus 157 ------------------~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~l~~~~~ 211 (349)
+...+.+++.|++.++.+. .+|..+ .+++|++|++.++.... ..+.....+++
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 0011234445555444433 222211 24445545444321110 00111122457
Q ss_pred CCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCcc-CCcCCcccccCCCccEEEecC
Q 038106 212 LQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNE-LTSIPLTFWNLNNILYLNFSS 290 (349)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~ 290 (349)
|+.|++++|......|..+.++++|+.|++++|......+... .+++|+.|++++|. +..+|.. ..+|++|++++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 8888888886666778788888888888888875444444443 57888888888874 3334432 36788899988
Q ss_pred CcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCcc
Q 038106 291 NFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 340 (349)
Q Consensus 291 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~ 340 (349)
|.+.. .|..+..+++|+.|++++|.-...++..+..+++|+.+++++|+
T Consensus 856 n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 856 TGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88876 67778888999999999876555677777888889999999987
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.8e-22 Score=195.69 Aligned_cols=302 Identities=21% Similarity=0.234 Sum_probs=217.5
Q ss_pred ccchhhccccccceeeccCcee------ccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCccccc
Q 038106 25 TVPAAIFNVSTLKSLELQDNSL------FGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGF 98 (349)
Q Consensus 25 ~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 98 (349)
....+|..+++|+.|.+..+.. ....+..+....++|+.|.+.++.+. ..|..+ .+.+|+.|++.++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 3456788999999999965532 12234444423356999999998876 666666 4789999999999887 4
Q ss_pred ccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCc
Q 038106 99 IPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGI 178 (349)
Q Consensus 99 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 178 (349)
.+..+..+++|+.++++++......+ .+..+++|+.|++++|......|. .+..+ .+|+.|++++|.....+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip------~ls~l~~Le~L~L~~c~~L~~lp~-si~~L-~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP------DLSMATNLETLKLSDCSSLVELPS-SIQYL-NKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC------ccccCCcccEEEecCCCCccccch-hhhcc-CCCCEEeCCCCCCcCcc
Confidence 56778889999999999875333222 366789999999999876555443 33433 38999999998766566
Q ss_pred chhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchh-----------------------------
Q 038106 179 PEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDS----------------------------- 229 (349)
Q Consensus 179 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~----------------------------- 229 (349)
|..+ .+++|+.|++++|.....++. ...+|+.|+++++.+.. .|..
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccccccccccccccccchhhccccccccchh
Confidence 6544 678888999888765434432 23466777777766542 2211
Q ss_pred -hccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCc-cCCcCCcccccCCCccEEEecCCcCCCCCCccccccccc
Q 038106 230 -ICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSN-ELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVL 307 (349)
Q Consensus 230 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 307 (349)
...+++|+.|++++|......|..+..+++|+.|++++| .+..+|... .+++|+.|++++|......+.. .++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cccc
Confidence 112357888888888766667888888999999999987 456677655 6788999999998655434432 3689
Q ss_pred cEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 308 VGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 308 ~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
+.|++++|.+. .+|..+..+++|+.|++++|+-...+|.
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 99999999987 6888899999999999999875445554
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3.1e-25 Score=181.53 Aligned_cols=305 Identities=27% Similarity=0.419 Sum_probs=203.8
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
+|+.++.+..|..|+++.|++. ++| .|.+|..|+++.++.|.+ ...++...+.++++..|++.+|++. ..|+.+..
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 5777777777777888777775 555 577777888888877776 6666666667888888888888877 77777777
Q ss_pred CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccc------hhc--------------------------
Q 038106 82 ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPEL------SFL-------------------------- 129 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------~~~-------------------------- 129 (349)
+++|+.|++++|.++ ..+..++++ .|+.|.+.+|.+.++..++ ..+
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 888888888888887 456677777 7888877777543221110 000
Q ss_pred ----ccccCCCCCcEEeCCCCccccccCCccccCcc-cccCeeeecCcccccCcchhccCCCCC-CEEEcCCccCCCccc
Q 038106 130 ----SSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS-HSLEDFKMHNCNVSGGIPEEISNLTNL-TTIDLGGNMLNGSIP 203 (349)
Q Consensus 130 ----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~~~~~~ 203 (349)
.......+.+.|++++-+++.+ |...+.... .-+...+++.+.+. .+|..+..+..+ +.+.++.|.++ ..+
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~ 428 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLV-PDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVP 428 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccC-CHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cch
Confidence 0011112223333333322211 111111110 11233333333333 222222222111 22233333333 556
Q ss_pred hhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCC
Q 038106 204 ITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNN 282 (349)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 282 (349)
..++.+++|..|++++|.+. ..|..+..+..|+.|+++.|.+. ..|..+.....++.+-.+++++..++.. +..+.+
T Consensus 429 ~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 67788899999999998776 78888888889999999999875 6788777777788888888999998766 888999
Q ss_pred ccEEEecCCcCCCCCCccccccccccEEEccCCeee
Q 038106 283 ILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 283 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
|..|++.+|.+.. +|..+++|.+|+.|++.||.|.
T Consensus 507 L~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 507 LTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cceeccCCCchhh-CChhhccccceeEEEecCCccC
Confidence 9999999999988 7888999999999999999886
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=7.8e-24 Score=189.81 Aligned_cols=320 Identities=28% Similarity=0.367 Sum_probs=181.2
Q ss_pred hccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCce
Q 038106 7 GNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLS 86 (349)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 86 (349)
.+.-.|+.|+++++++. ..|..+..+++|+.|++++|.+ ...+.... .+.+|+++++..+... ..|..+..+.+|+
T Consensus 42 ~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i-~~vp~s~~-~~~~l~~lnL~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI-RSVPSSCS-NMRNLQYLNLKNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred hheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH-hhCchhhh-hhhcchhheeccchhh-cCchhHHhhhccc
Confidence 33444777777777654 5666666777777777777766 34443333 5666777777666554 5566666666667
Q ss_pred EEEccCCcccccccccccCCC----------------------------------------CCC-EEEccCCcccCCCcc
Q 038106 87 ILEFSKNSFSGFIPNTFGNLR----------------------------------------NLQ-KLRLYDNYLTSSTPE 125 (349)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~~----------------------------------------~L~-~L~l~~~~~~~~~~~ 125 (349)
.|++++|.+... |..+..+. .++ .+++.+|.+...
T Consensus 118 ~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--- 193 (1081)
T KOG0618|consen 118 YLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--- 193 (1081)
T ss_pred ccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh---
Confidence 777766655421 11111111 111 234444433211
Q ss_pred chhcccccCCCCCcEEe--------------------CCCCccccccCCccccCcccccCeeeecCcccccCcchhccCC
Q 038106 126 LSFLSSLSNCKSLTHIG--------------------LSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNL 185 (349)
Q Consensus 126 ~~~~~~l~~~~~L~~L~--------------------l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~ 185 (349)
.+..+++|+.+. ...|.+... .....|.++++++++.+.+. .+|.++..+
T Consensus 194 -----dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~----~~~p~p~nl~~~dis~n~l~-~lp~wi~~~ 263 (1081)
T KOG0618|consen 194 -----DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL----DVHPVPLNLQYLDISHNNLS-NLPEWIGAC 263 (1081)
T ss_pred -----hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee----ccccccccceeeecchhhhh-cchHHHHhc
Confidence 122333333333 333333311 22223456666777666666 344667777
Q ss_pred CCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCC-CCceEe
Q 038106 186 TNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLA-SLRILS 264 (349)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~ 264 (349)
.+|+.++...|++. ..+..+....+|+.|....|.+. -.|......++|++|++..|.+.......+.... +++.++
T Consensus 264 ~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln 341 (1081)
T KOG0618|consen 264 ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN 341 (1081)
T ss_pred ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence 77777777776664 44444455566777777766665 3444556677777777777776533222222221 245555
Q ss_pred cCCccCCcCCcc-cccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccC
Q 038106 265 LGSNELTSIPLT-FWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 265 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
.+.+++..++.. -..++.|+.|++.+|.+++...+.+..+++|+.|++++|++.......+.+++.|++|+|+||+++
T Consensus 342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 555555544421 112456777777777777766666777777777777777777555556677777777777777775
Q ss_pred CCCC
Q 038106 344 SIPD 347 (349)
Q Consensus 344 ~~p~ 347 (349)
.+|+
T Consensus 421 ~Lp~ 424 (1081)
T KOG0618|consen 421 TLPD 424 (1081)
T ss_pred hhhH
Confidence 3554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-22 Score=181.76 Aligned_cols=292 Identities=27% Similarity=0.276 Sum_probs=197.3
Q ss_pred cccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEE
Q 038106 34 STLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLR 113 (349)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 113 (349)
++++.|...+|.++..... ..-.+|++++++++.+. ..|.++..+.+|+.+++.+|.+. ..+..+....+|+.+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLS 293 (1081)
T ss_pred cchheeeeccCcceeeccc---cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHH
Confidence 4566666666665422111 13457889999988887 66688888999999999888885 5566677778888888
Q ss_pred ccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEc
Q 038106 114 LYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDL 193 (349)
Q Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 193 (349)
+..|++...++. ....+.|++|++..|.+.. .|..++......+..+..+.+.+.......=..++.|+.|.+
T Consensus 294 ~~~nel~yip~~------le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 294 AAYNELEYIPPF------LEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred hhhhhhhhCCCc------ccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 888888777654 6667888999998888764 333344433334556666555554322111123456777888
Q ss_pred CCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC
Q 038106 194 GGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273 (349)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (349)
.+|.+++.....+....+||.|++++|.+.......+.+++.|++|+++||.+. .++..+..++.|++|...+|.+..+
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f 445 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF 445 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec
Confidence 888888776667777888888888888777555556677888888888888776 4467777788888888888888888
Q ss_pred CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCc
Q 038106 274 PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 339 (349)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~ 339 (349)
| .+..++.|+.++++.|.+.........--++|++||++||.-....-..+..+.++...++.-+
T Consensus 446 P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 446 P-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred h-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 7 5566788888888888777643322222278888888888633222234444444444444333
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=3.4e-19 Score=163.84 Aligned_cols=264 Identities=25% Similarity=0.367 Sum_probs=164.0
Q ss_pred cccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEc
Q 038106 11 NLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEF 90 (349)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 90 (349)
+-..|++++++++ .+|..+. ++|+.|.+.+|.++. .|. .+++|++|++++|.++ ..|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 4456788887776 5665553 368888888887743 332 3577888888888776 33432 357778888
Q ss_pred cCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeec
Q 038106 91 SKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMH 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~ 170 (349)
.+|.+.. ++.. ..+|+.|++++|.+...+. ..++|+.|++++|.+... + ..+..++.|++.
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP~---------~p~~L~~LdLS~N~L~~L-p-----~lp~~L~~L~Ls 330 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLASL-P-----ALPSELCKLWAY 330 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccccc---------cccccceeECCCCccccC-C-----CCcccccccccc
Confidence 8877663 2222 2567778888887766542 135688888888777642 1 134567777777
Q ss_pred CcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCC
Q 038106 171 NCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSI 250 (349)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 250 (349)
+|.+.. +|. ...+|+.|++++|.+.+ .+. ...+|+.|++++|.+.. +|.. ..+|+.|++++|.+.. .
T Consensus 331 ~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 331 NNQLTS-LPT---LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cCcccc-ccc---cccccceEecCCCccCC-CCC---CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-C
Confidence 777663 332 12467777777777763 332 13466777777776663 3332 2457777777776652 2
Q ss_pred hhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCccc
Q 038106 251 PACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEI 325 (349)
Q Consensus 251 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 325 (349)
+.. .++|+.|++++|.+..+|.. ..+|+.|++++|.+.. +|..+.++++|+.|++++|.+.+..+..+
T Consensus 398 P~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 221 24677777777777666643 2456667777777765 55566667777777777777665544433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=5.6e-19 Score=162.41 Aligned_cols=263 Identities=24% Similarity=0.338 Sum_probs=182.5
Q ss_pred cccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEE
Q 038106 34 STLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLR 113 (349)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 113 (349)
..-..|+++.+.++ ..|..+. ++|+.|++.+|.++ .+|. .+++|++|++++|.++.. +. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc-cC---cccccceee
Confidence 34567888888774 4454432 47888888888877 4443 257888888888887743 33 246788888
Q ss_pred ccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEc
Q 038106 114 LYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDL 193 (349)
Q Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 193 (349)
+++|.+..++.. .+.|+.|++++|.+... | ..+++|+.|++++|.+.. ++.. ...|+.|++
T Consensus 269 Ls~N~L~~Lp~l---------p~~L~~L~Ls~N~Lt~L-P-----~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 269 IFSNPLTHLPAL---------PSGLCKLWIFGNQLTSL-P-----VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred ccCCchhhhhhc---------hhhcCEEECcCCccccc-c-----ccccccceeECCCCcccc-CCCC---ccccccccc
Confidence 888877655421 25678888888877643 2 124578888888888774 2321 235777888
Q ss_pred CCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcC
Q 038106 194 GGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSI 273 (349)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (349)
++|.+.+ ++. ...+|+.|++++|.+++ +|.. ..+|+.|++++|.+.. ++.. ..+|+.|++++|.+..+
T Consensus 330 s~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L 397 (788)
T PRK15387 330 YNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL 397 (788)
T ss_pred ccCcccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCC
Confidence 8887763 332 12578888888888873 4432 3567788888887763 3332 35788888888888877
Q ss_pred CcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccCCCCC
Q 038106 274 PLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 274 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~p~ 347 (349)
|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|.+. .+|..+..+++|+.|+|++|++++..|.
T Consensus 398 P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 398 PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 743 3578888888888876 4432 346778888888887 6788888888888889999888876553
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-21 Score=160.37 Aligned_cols=253 Identities=23% Similarity=0.247 Sum_probs=171.7
Q ss_pred cccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEec-cCCcCCCccchhhccCCCceEEE
Q 038106 11 NLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLL-WGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
.-..+.+..|+|+...+.+|+.+++||.|+|++|.|....+.. +++++.|.+|-+ ++|+|++...+.|.++..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~A-F~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDA-FKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHh-hhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3456778888888777788888888999999888884444444 448888776654 44788866556778888888888
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccC----------
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGN---------- 159 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---------- 159 (349)
+.-+++.-...+.+..++++..|.+.+|.+..+... .+..+.+++++.+..+.+...-...+...
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~-----tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKG-----TFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccc-----cccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 888887766677788888888888888877665543 35566666776665554211100000000
Q ss_pred ----------------------cccccCee---eecCcccccCcc-hhccCCCCCCEEEcCCccCCCccchhccccCCCC
Q 038106 160 ----------------------LSHSLEDF---KMHNCNVSGGIP-EEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQ 213 (349)
Q Consensus 160 ----------------------~~~~l~~L---~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 213 (349)
+...++.+ ....|......| ..+..+++|++|++++|.++.....+|.+...++
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 00011111 111222222222 3467788888888888888877788888888888
Q ss_pred eeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCcc
Q 038106 214 GLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNE 269 (349)
Q Consensus 214 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (349)
+|.+.+|.+......+|.++..|++|++.+|+++...+.+|....+|.+|++-.|+
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 88888888776666677888888888888888877777777777777777776654
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=5e-20 Score=158.07 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=61.3
Q ss_pred cCCcccEEEcCCCccCCCC----hhhhhCCCCCceEecCCccCCc--C---Cccc-ccCCCccEEEecCCcCCCCC----
Q 038106 232 RLTELYELELGGNKLFGSI----PACFSNLASLRILSLGSNELTS--I---PLTF-WNLNNILYLNFSSNFFTAPL---- 297 (349)
Q Consensus 232 ~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~--~---~~~~-~~~~~L~~L~l~~~~~~~~~---- 297 (349)
.+++|+.|++++|.+.+.. ...+..+++|++|++++|.+.+ + ...+ ...++|++|++++|.+++..
T Consensus 191 ~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l 270 (319)
T cd00116 191 ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDL 270 (319)
T ss_pred hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHH
Confidence 3345555555555543221 2233455667777777666654 1 1111 12367777777777776422
Q ss_pred CccccccccccEEEccCCeeeec----cCcccccC-CCCceEecCCccc
Q 038106 298 PLEIGNLKVLVGMDFSMNNFSGV----IPTEIGGL-KNLEYLFLGYNRL 341 (349)
Q Consensus 298 ~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~-~~L~~l~l~~~~~ 341 (349)
...+..+++|+.+++++|.+... .+..+... +.++++++.++++
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 22344556788888888877643 33333333 5788888877764
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=5e-20 Score=158.03 Aligned_cols=280 Identities=20% Similarity=0.202 Sum_probs=167.5
Q ss_pred EEecCCcccc-CccchhhccccccceeeccCceeccccCcc---ccccCCcccEEeccCCcCCC------ccchhhccCC
Q 038106 14 RLGLGLNKLI-GTVPAAIFNVSTLKSLELQDNSLFGSISSI---IDVRLPNLERLLLWGNNFSG------TIPRFIFNAS 83 (349)
Q Consensus 14 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~------~~~~~~~~~~ 83 (349)
.|++..+.+. ......+..++.|+.|+++++.+....... .....+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3556666655 334455566667888888877763321111 12245667777777765541 1223445566
Q ss_pred CceEEEccCCcccccccccccCC---CCCCEEEccCCcccCCCccchhcccccCC-CCCcEEeCCCCccccccCCccccC
Q 038106 84 KLSILEFSKNSFSGFIPNTFGNL---RNLQKLRLYDNYLTSSTPELSFLSSLSNC-KSLTHIGLSNNPLDCILPKTSIGN 159 (349)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 159 (349)
+|+.|+++++.+....+..+..+ ++|++|++++|.+...... .....+..+ ++|+.|++++|.+.....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~------ 154 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR-LLAKGLKDLPPALEKLVLGRNRLEGASC------ 154 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-HHHHHHHhCCCCceEEEcCCCcCCchHH------
Confidence 77777777666653333333322 2366666666655431111 111123333 455555555554432100
Q ss_pred cccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCcc----chhccccCCCCeeecCCCcCCCCC----chhhc
Q 038106 160 LSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSI----PITLSKLQKLQGLRFEDNKLEGSI----PDSIC 231 (349)
Q Consensus 160 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~ 231 (349)
......+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+.+.. ...+.
T Consensus 155 ----------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 155 ----------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ----------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 112334566788999999999887432 223445579999999999876432 33456
Q ss_pred cCCcccEEEcCCCccCCCChhhhh-C----CCCCceEecCCccCCc-----CCcccccCCCccEEEecCCcCCCCCCc--
Q 038106 232 RLTELYELELGGNKLFGSIPACFS-N----LASLRILSLGSNELTS-----IPLTFWNLNNILYLNFSSNFFTAPLPL-- 299 (349)
Q Consensus 232 ~~~~L~~L~l~~~~~~~~~~~~~~-~----~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 299 (349)
.+++|++|++++|.+.+.....+. . .+.|++|++++|.+++ +...+..+++|+++++++|.+.++...
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 778899999999987653333332 2 3789999999998863 344556668999999999999875332
Q ss_pred --ccccc-ccccEEEccCCe
Q 038106 300 --EIGNL-KVLVGMDFSMNN 316 (349)
Q Consensus 300 --~~~~~-~~L~~L~l~~~~ 316 (349)
.+... +.++++++.++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 299 AESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhhcCCchhhcccCCCC
Confidence 23333 678888887775
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=2e-17 Score=153.06 Aligned_cols=248 Identities=23% Similarity=0.405 Sum_probs=172.9
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILE 89 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 89 (349)
.+...|++++++++ .+|..+. +.|+.|++++|.+. ..+..+ .++|++|++++|.+. .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 35678888888776 4555432 47889999999885 444433 358999999998887 4555443 4789999
Q ss_pred ccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeee
Q 038106 90 FSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKM 169 (349)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l 169 (349)
+++|.+. .+|..+. .+|+.|++++|.+..++.. + .++|+.|++++|.+... +. .++.+++.|++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~------l--~~sL~~L~Ls~N~Lt~L-P~----~lp~sL~~L~L 311 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISCLPEN------L--PEELRYLSVYDNSIRTL-PA----HLPSGITHLNV 311 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCccccc------c--CCCCcEEECCCCccccC-cc----cchhhHHHHHh
Confidence 9999887 3444443 5789999998888766543 2 24789999999887643 21 23457888888
Q ss_pred cCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCC
Q 038106 170 HNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 249 (349)
++|.+.. +|..+ .++|+.|++++|.++. ++..+. ++|+.|++++|.++ ..|..+ .++|+.|++++|.+..
T Consensus 312 s~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 312 QSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN- 381 (754)
T ss_pred cCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-
Confidence 8888774 33322 3578888888888773 444443 68888999888877 455444 3678888888888763
Q ss_pred ChhhhhCCCCCceEecCCccCCcCCcccc----cCCCccEEEecCCcCCC
Q 038106 250 IPACFSNLASLRILSLGSNELTSIPLTFW----NLNNILYLNFSSNFFTA 295 (349)
Q Consensus 250 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~ 295 (349)
.+..+. .+|+.|++++|++..+|..+. ..+++..+++.+|++..
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 344443 368888888888887766443 34777888888888764
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=5.5e-20 Score=150.59 Aligned_cols=131 Identities=24% Similarity=0.295 Sum_probs=102.7
Q ss_pred cccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEEEccC-CcccccccccccCCCCCCEE
Q 038106 34 STLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSK-NSFSGFIPNTFGNLRNLQKL 112 (349)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 112 (349)
+.-..++|..|.| ..+|...++.+++|++|++++|.|+.+.|++|+.++.+.+|.+.+ |.|+......|+++..++.|
T Consensus 67 ~~tveirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3567899999998 666767777999999999999999999999999999988888877 88988778889999999999
Q ss_pred EccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCc
Q 038106 113 RLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC 172 (349)
Q Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 172 (349)
.+.-|.+.....+ .+..++++..|.+..|.+... ....+..+ ..++.+.+..+
T Consensus 146 llNan~i~Cir~~-----al~dL~~l~lLslyDn~~q~i-~~~tf~~l-~~i~tlhlA~n 198 (498)
T KOG4237|consen 146 LLNANHINCIRQD-----ALRDLPSLSLLSLYDNKIQSI-CKGTFQGL-AAIKTLHLAQN 198 (498)
T ss_pred hcChhhhcchhHH-----HHHHhhhcchhcccchhhhhh-ccccccch-hccchHhhhcC
Confidence 9988888776655 578889999999988877533 22222222 24555554443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=4.7e-17 Score=150.63 Aligned_cols=246 Identities=26% Similarity=0.419 Sum_probs=132.7
Q ss_pred cccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCc
Q 038106 60 NLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLT 139 (349)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~ 139 (349)
+...|+++++.++ ..|..+ .++|+.|++++|.+.. ++..+. .+|++|++++|.+..++.. + .++|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsLP~~------l--~~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSIPAT------L--PDTIQ 244 (754)
T ss_pred CceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccCChh------h--hcccc
Confidence 3455666655554 334333 2356666666666653 233222 4566666666665544322 1 13566
Q ss_pred EEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCC
Q 038106 140 HIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFED 219 (349)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 219 (349)
.|++++|.+... |. .++.+|+.|++++|.+.. +|..+. ++|+.|++++|.+.. .+..+. ++|+.|++++
T Consensus 245 ~L~Ls~N~L~~L-P~----~l~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 245 EMELSINRITEL-PE----RLPSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQS 313 (754)
T ss_pred EEECcCCccCcC-Ch----hHhCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcC
Confidence 666666665422 22 123456666666666552 333222 366677776666652 232222 3566666766
Q ss_pred CcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCc
Q 038106 220 NKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPL 299 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 299 (349)
|.++. .|..+ .++|+.|++++|.+.. ++..+ .++|+.|++++|.+..+|..+ .++|++|++++|.+.. .|.
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~-LP~ 384 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTN-LPE 384 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCC-CCH
Confidence 66653 33222 2466677777766553 33333 256777777777766665543 2567777777776665 343
Q ss_pred cccccccccEEEccCCeeeeccCccc----ccCCCCceEecCCcccc
Q 038106 300 EIGNLKVLVGMDFSMNNFSGVIPTEI----GGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 300 ~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~l~l~~~~~~ 342 (349)
.+. +.|+.|++++|.+. .+|..+ ..++.+..+++.+|+++
T Consensus 385 ~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 332 35666777777665 334333 23466667777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.8e-17 Score=120.92 Aligned_cols=161 Identities=29% Similarity=0.500 Sum_probs=125.7
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
++..|.++++.++ ..|..++.+.+|+.|++.+|++. ..|..++.+++|+.|.++-|.+. ..|..|++++.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 6677788888877 44556778888888888888887 66777888888888888877766 678888888888888888
Q ss_pred CCccCC-CChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeecc
Q 038106 243 GNKLFG-SIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVI 321 (349)
Q Consensus 243 ~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 321 (349)
.|.+.. ..+..|..|..|+.|++++|.+.-+|..++.+++|+.|.+..|++.. .|..++.+..|+.|++.+|+++ .+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~-vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLT-VL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceee-ec
Confidence 877653 45666677788888888888888888888888888888888888877 7777888888888888888887 55
Q ss_pred CcccccC
Q 038106 322 PTEIGGL 328 (349)
Q Consensus 322 ~~~l~~~ 328 (349)
|..++.+
T Consensus 189 ppel~~l 195 (264)
T KOG0617|consen 189 PPELANL 195 (264)
T ss_pred Chhhhhh
Confidence 5555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-16 Score=116.36 Aligned_cols=158 Identities=32% Similarity=0.554 Sum_probs=109.1
Q ss_pred CCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceE
Q 038106 184 NLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRIL 263 (349)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 263 (349)
.+.+++.|.++.|.++ ..+..++.+.+|+.|.+.+|.+. .+|..++.+++|+.|++.-|.+. ..+..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4455666667777766 44445666777777777777776 56666777777777777776654 556667777777777
Q ss_pred ecCCccCCc--CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccc
Q 038106 264 SLGSNELTS--IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 264 ~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
++.+|.+.+ +|..|..+..|+-|++..|.+.- .|..++++++|+.|.+..|.+. ..|..++.+..|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 777776655 66666667777777777777654 6666777777777777777766 5677777777777777777777
Q ss_pred cCCCCC
Q 038106 342 QGSIPD 347 (349)
Q Consensus 342 ~~~~p~ 347 (349)
+ ++|.
T Consensus 186 ~-vlpp 190 (264)
T KOG0617|consen 186 T-VLPP 190 (264)
T ss_pred e-ecCh
Confidence 6 4444
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.49 E-value=3.9e-15 Score=120.62 Aligned_cols=247 Identities=20% Similarity=0.212 Sum_probs=129.0
Q ss_pred cCCcccEEeccCCcCCCccchh----hccCCCceEEEccCCc---cccccc-------ccccCCCCCCEEEccCCcccCC
Q 038106 57 RLPNLERLLLWGNNFSGTIPRF----IFNASKLSILEFSKNS---FSGFIP-------NTFGNLRNLQKLRLYDNYLTSS 122 (349)
Q Consensus 57 ~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~---~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~ 122 (349)
.+..++.+++++|.+......+ +.+.+.|+..++++-. ....++ .++..+++|+++++++|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4566777777777766544433 3344566666665431 111111 2233455666666666654332
Q ss_pred CccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCcc
Q 038106 123 TPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSI 202 (349)
Q Consensus 123 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 202 (349)
... .+...+.++..|++|.+.+|.+........-. .+..+. .......-+.|+++.+++|++.+..
T Consensus 108 g~~-~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~----al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 108 GIR-GLEELLSSCTDLEELYLNNCGLGPEAGGRLGR----ALFELA---------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred chH-HHHHHHHhccCHHHHhhhcCCCChhHHHHHHH----HHHHHH---------HHhccCCCcceEEEEeecccccccc
Confidence 211 22233445555666666555554322211000 011110 1122345677888888888776433
Q ss_pred ----chhccccCCCCeeecCCCcCCCCC----chhhccCCcccEEEcCCCccCCCCh----hhhhCCCCCceEecCCccC
Q 038106 203 ----PITLSKLQKLQGLRFEDNKLEGSI----PDSICRLTELYELELGGNKLFGSIP----ACFSNLASLRILSLGSNEL 270 (349)
Q Consensus 203 ----~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~ 270 (349)
...|...+.|+.+.+..|.+.... ...+..+++|+.||+.+|.++.... ..+..+++|+.+++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 334556677888888777665322 2344567777777777776654322 3334456666777777665
Q ss_pred Cc-----CCccc-ccCCCccEEEecCCcCCCCCCcc----ccccccccEEEccCCee
Q 038106 271 TS-----IPLTF-WNLNNILYLNFSSNFFTAPLPLE----IGNLKVLVGMDFSMNNF 317 (349)
Q Consensus 271 ~~-----~~~~~-~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~ 317 (349)
.+ +...+ ...|+|+++.+.+|.++.+.... +...|.|+.|++++|++
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 54 11111 23466666666666665532221 22346666666666665
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-14 Score=117.37 Aligned_cols=242 Identities=20% Similarity=0.231 Sum_probs=129.1
Q ss_pred hhccccccEEecCCccccC----ccchhhccccccceeeccCcee---ccccCccc------cccCCcccEEeccCCcCC
Q 038106 6 IGNLRNLERLGLGLNKLIG----TVPAAIFNVSTLKSLELQDNSL---FGSISSII------DVRLPNLERLLLWGNNFS 72 (349)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~------~~~l~~L~~L~l~~~~~~ 72 (349)
+..+..++.+++++|.+.. .+...+.+-++|+..++++-.- ....++.. ...+|+|+++++|+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4455667777777776542 3444555566777777765321 11111111 124567777777777666
Q ss_pred Cccchh----hccCCCceEEEccCCccccccc-------------ccccCCCCCCEEEccCCcccCCCccchhcccccCC
Q 038106 73 GTIPRF----IFNASKLSILEFSKNSFSGFIP-------------NTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNC 135 (349)
Q Consensus 73 ~~~~~~----~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 135 (349)
...+.. +..+..|++|.+.+|.+..... ....+.++|+++...+|.+...+. ..+...++.+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga-~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA-TALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH-HHHHHHHHhc
Confidence 444433 3356677777777776652211 112334556666666665544332 2333445555
Q ss_pred CCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCc----cchhccccCC
Q 038106 136 KSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGS----IPITLSKLQK 211 (349)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~ 211 (349)
+.|+.+.+.+|.+..... ......+..+++|++||+.+|-++.. ....++.+++
T Consensus 185 ~~leevr~~qN~I~~eG~----------------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGV----------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred cccceEEEecccccCchh----------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence 566666665555432100 01224456677777777777766633 2334555666
Q ss_pred CCeeecCCCcCCCCCchhh-----ccCCcccEEEcCCCccCCCC----hhhhhCCCCCceEecCCccC
Q 038106 212 LQGLRFEDNKLEGSIPDSI-----CRLTELYELELGGNKLFGSI----PACFSNLASLRILSLGSNEL 270 (349)
Q Consensus 212 L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 270 (349)
|+.+.+++|.+......++ ...|+|+.+.+.+|.++... ...+...+.|+.|++++|.+
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7777777776654333222 23566666666666654322 12233456666666666665
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-12 Score=123.47 Aligned_cols=106 Identities=27% Similarity=0.278 Sum_probs=54.3
Q ss_pred ccccEEecCCcc--ccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceE
Q 038106 10 RNLERLGLGLNK--LIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87 (349)
Q Consensus 10 ~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 87 (349)
++|++|-+.++. +.....+.|..++.|++||+++|.-....|..+. .+-+||+|+++++.+. .+|..+.+++.|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~-~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG-ELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh-hhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 345555554443 2223333455555666666655544344555544 5555666666555554 55555555555666
Q ss_pred EEccCCcccccccccccCCCCCCEEEccCC
Q 038106 88 LEFSKNSFSGFIPNTFGNLRNLQKLRLYDN 117 (349)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 117 (349)
|++..+......+.....+++|++|.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 655555433223334444555666555443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.7e-13 Score=114.46 Aligned_cols=213 Identities=19% Similarity=0.198 Sum_probs=134.6
Q ss_pred ccCCCceEEEccCCccccccc-ccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCcccc
Q 038106 80 FNASKLSILEFSKNSFSGFIP-NTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIG 158 (349)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 158 (349)
.++.+|+++.++++.+..... .....|++++.|++++|-+..+.+.. .-+..+|+|+.|+++.|.+........ .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~---~i~eqLp~Le~LNls~Nrl~~~~~s~~-~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVL---KIAEQLPSLENLNLSSNRLSNFISSNT-T 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHH---HHHHhcccchhcccccccccCCccccc-h
Confidence 346778888888887763222 24556888888888888776654332 235667888888888888764433322 2
Q ss_pred CcccccCeeeecCcccccCc-chhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCC-CchhhccCCcc
Q 038106 159 NLSHSLEDFKMHNCNVSGGI-PEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGS-IPDSICRLTEL 236 (349)
Q Consensus 159 ~~~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 236 (349)
...+.++.|.++.|.++-.. ...+..+|+++.|++..|..-.........++.|++|+|++|.+-.. .......++.|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 23347888888888776322 22345678888888887742212222334556788888888765422 22345677788
Q ss_pred cEEEcCCCccCCCChh------hhhCCCCCceEecCCccCCcCCc--ccccCCCccEEEecCCcCCCC
Q 038106 237 YELELGGNKLFGSIPA------CFSNLASLRILSLGSNELTSIPL--TFWNLNNILYLNFSSNFFTAP 296 (349)
Q Consensus 237 ~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~ 296 (349)
+-|.++.|.+.+.-.. .....++|++|++..|++.+.+. .+...++|+.|.+.++.+..+
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 8888877766432111 12345778888888888766432 455667777777777776654
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=7.5e-13 Score=110.62 Aligned_cols=211 Identities=23% Similarity=0.233 Sum_probs=114.5
Q ss_pred cCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcch-hc
Q 038106 104 GNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPE-EI 182 (349)
Q Consensus 104 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~l 182 (349)
.++.+|+++.+.++.+...+.. .....+++++.|++++|-+....+...+....++|+.|+++.|.+...... .-
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchh----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 3577888888888776554432 246678889999998887765544433333334666666666655422211 11
Q ss_pred cCCCCCCEEEcCCccCCCc-cchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCC-hhhhhCCCCC
Q 038106 183 SNLTNLTTIDLGGNMLNGS-IPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSI-PACFSNLASL 260 (349)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 260 (349)
..+++++.|.++.|.++.. .......+|+++.|++.+|...........-+..|++|++++|.+.+.. ......++.|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 2345666666666666522 2223345566666666666311111111223455666666666554221 1233455666
Q ss_pred ceEecCCccCCcC--Ccc-----cccCCCccEEEecCCcCCCC-CCccccccccccEEEccCCeee
Q 038106 261 RILSLGSNELTSI--PLT-----FWNLNNILYLNFSSNFFTAP-LPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 261 ~~L~l~~~~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
+.|+++.|+++++ +.. ...+++|++|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666666666653 211 23456666666666666442 1223344555555665555543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.8e-11 Score=93.05 Aligned_cols=125 Identities=23% Similarity=0.285 Sum_probs=41.9
Q ss_pred CCCCCCEEEcCCccCCCccchhcc-ccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCce
Q 038106 184 NLTNLTTIDLGGNMLNGSIPITLS-KLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRI 262 (349)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 262 (349)
+..++++|++.++.++.. +.+. .+.+|+.|++++|.+... ..+..+++|++|++++|.+..........+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 344567778887777632 2233 356777777877777632 24566777777777777776443222235677777
Q ss_pred EecCCccCCcCCc--ccccCCCccEEEecCCcCCCCCC---ccccccccccEEEc
Q 038106 263 LSLGSNELTSIPL--TFWNLNNILYLNFSSNFFTAPLP---LEIGNLKVLVGMDF 312 (349)
Q Consensus 263 L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 312 (349)
|++++|++.++.. .+..+++|+.|++.+|++..... ..+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7777777766432 45567777777777777765322 12345677777763
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.6e-12 Score=101.24 Aligned_cols=132 Identities=28% Similarity=0.313 Sum_probs=102.6
Q ss_pred cccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEE
Q 038106 207 SKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYL 286 (349)
Q Consensus 207 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 286 (349)
.-...|+++++++|.++ .......-.|.++.|++++|.+... ..++.+++|..|++++|.++++..+-..+-+++.|
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 34467888888888877 4555566678889999999887533 34778889999999999888877776777889999
Q ss_pred EecCCcCCCCCCccccccccccEEEccCCeeeec-cCcccccCCCCceEecCCccccC
Q 038106 287 NFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
.+++|.+.+. ..+.++-+|..||+++|+|... -...++++|.|+.+.+.+||+.+
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999887652 3466778899999999988642 22578889999999999999875
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.16 E-value=8.9e-12 Score=99.62 Aligned_cols=133 Identities=26% Similarity=0.408 Sum_probs=102.9
Q ss_pred ccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCc
Q 038106 182 ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLR 261 (349)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 261 (349)
+..+..|+++|+++|.++ .+.....-.|.++.|+++.|.+... ..+..+++|+.||+++|.+. ....+-.++-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 445667888999998887 6666677778899999999988732 23677889999999998775 3344555778889
Q ss_pred eEecCCccCCcCCcccccCCCccEEEecCCcCCC-CCCccccccccccEEEccCCeeee
Q 038106 262 ILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTA-PLPLEIGNLKVLVGMDFSMNNFSG 319 (349)
Q Consensus 262 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~ 319 (349)
+|++.+|.+.++. .+..+.+|..|++.+|++.. +....++++|.|+.+.+.+|.+.+
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999998888765 34567788999999998876 345678889999999999998764
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=6.3e-11 Score=90.16 Aligned_cols=123 Identities=24% Similarity=0.230 Sum_probs=33.7
Q ss_pred cCCCCeeecCCCcCCCCCchhhc-cCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCccc-ccCCCccEE
Q 038106 209 LQKLQGLRFEDNKLEGSIPDSIC-RLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTF-WNLNNILYL 286 (349)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 286 (349)
+..+++|++.++.+... ..+. .+.+|+.|++++|.+... +.+..++.|++|++++|.++++...+ ..+++|++|
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 34455666666655421 1222 345566666666655422 23455566666666666666554333 245566666
Q ss_pred EecCCcCCCC-CCccccccccccEEEccCCeeeecc---CcccccCCCCceEe
Q 038106 287 NFSSNFFTAP-LPLEIGNLKVLVGMDFSMNNFSGVI---PTEIGGLKNLEYLF 335 (349)
Q Consensus 287 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~l~ 335 (349)
++++|.+.+. ....+..+++|+.|++.+|.++..- ...+..+|+|+.||
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666655542 1234455566666666666554310 12334455555443
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.9e-12 Score=101.41 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=81.5
Q ss_pred cccEEeccCCcCCCc-cchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCc-ccCCCccchhcccccCCCC
Q 038106 60 NLERLLLWGNNFSGT-IPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNY-LTSSTPELSFLSSLSNCKS 137 (349)
Q Consensus 60 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~l~~~~~ 137 (349)
.||+|+++...++.. ....+..|.+|+.+.+.+.++.+-+...+++=.+|+.++++.|. ++... ....+.+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~----~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA----LQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH----HHHHHHhhhh
Confidence 466777766655532 22334556677777777766665555556666667777766653 21111 1113556666
Q ss_pred CcEEeCCCCccccccCCccccCcccccCeeeecCcccc---cCcchhccCCCCCCEEEcCCccC-CCccchhccccCCCC
Q 038106 138 LTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVS---GGIPEEISNLTNLTTIDLGGNML-NGSIPITLSKLQKLQ 213 (349)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~ 213 (349)
|..|++++|......-...+....++++.|+++|+.-. ..+....+.+|+|.+||++++.. +......+-+++.|+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 77777766665543333333333445555666555321 11122234667777777766533 222223334445555
Q ss_pred eeecCCC
Q 038106 214 GLRFEDN 220 (349)
Q Consensus 214 ~L~l~~~ 220 (349)
+|.++.|
T Consensus 342 ~lSlsRC 348 (419)
T KOG2120|consen 342 HLSLSRC 348 (419)
T ss_pred eeehhhh
Confidence 5555554
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.4e-10 Score=109.91 Aligned_cols=325 Identities=22% Similarity=0.215 Sum_probs=156.8
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCcee-ccccCccccccCCcccEEeccCCcCCCccchhhccCCCceEE
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSL-FGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSIL 88 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 88 (349)
...+..++.++.+. ..+.. ..+++|++|-+..+.. ....+..++..+|.|+.|++++|.-...+|+.++.+-+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 44455555555443 22222 2445777887777751 233444444578888888888776555788888888888888
Q ss_pred EccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccc-cCCccccCcccccCee
Q 038106 89 EFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCI-LPKTSIGNLSHSLEDF 167 (349)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~l~~L 167 (349)
+++++.+. .+|..++++..|.+|++..+......+. ....+++|++|.+........ .-..... ...+|+.+
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-----i~~~L~~Lr~L~l~~s~~~~~~~~l~el~-~Le~L~~l 673 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG-----ILLELQSLRVLRLPRSALSNDKLLLKELE-NLEHLENL 673 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccc-----hhhhcccccEEEeeccccccchhhHHhhh-cccchhhh
Confidence 88888777 5677788888888888776654333322 244467777777755431100 0000110 11123333
Q ss_pred eecCcccccCcchhccCCCCCCE----EEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhc------cCCccc
Q 038106 168 KMHNCNVSGGIPEEISNLTNLTT----IDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSIC------RLTELY 237 (349)
Q Consensus 168 ~l~~~~~~~~~~~~l~~~~~L~~----L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~L~ 237 (349)
....... .+...+..++.|.. +.+.++... .....+..+.+|+.|.+.+|.+.+....... .++++.
T Consensus 674 s~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 674 SITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred eeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 3322211 00011122222221 111111111 2233444556666777666655422111111 122333
Q ss_pred EEEcCCCccCCCChhhhhCCCCCceEecCCccCCc-CCcccccCCCccEEEecCCcCCCC-CCccccccccccEEEccCC
Q 038106 238 ELELGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFTAP-LPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 238 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~ 315 (349)
.+...+|..... +.+.-..++|+.+.+..|+..+ .......+..++.+.+..+.+... .....+.++++..+.+.+-
T Consensus 751 ~~~~~~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~ 829 (889)
T KOG4658|consen 751 KVSILNCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL 829 (889)
T ss_pred HHHhhccccccc-cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCcc
Confidence 333333332211 2222234677777777775444 332333444444444444444442 2233344444444444433
Q ss_pred eeee----ccCcccccCCCCceEecCCc-cccCCCCCC
Q 038106 316 NFSG----VIPTEIGGLKNLEYLFLGYN-RLQGSIPDS 348 (349)
Q Consensus 316 ~~~~----~~~~~l~~~~~L~~l~l~~~-~~~~~~p~~ 348 (349)
.+.. .. ..+..+|.+..+.+.+| +.....|++
T Consensus 830 ~l~~~~ve~~-p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 830 KLEELIVEEC-PKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred chhheehhcC-cccccCccccccceeccccceeecCCc
Confidence 2221 11 12345666777777775 443455554
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.2e-12 Score=101.24 Aligned_cols=178 Identities=17% Similarity=0.128 Sum_probs=125.1
Q ss_pred cccCeeeecCccccc-CcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCC-cCCCCCc-hhhccCCcccE
Q 038106 162 HSLEDFKMHNCNVSG-GIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN-KLEGSIP-DSICRLTELYE 238 (349)
Q Consensus 162 ~~l~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~ 238 (349)
+.++.++++...++. .+...++.|.+|+.|.+.++++.+.....++...+|+.++++.| ++++... ..+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357888888877763 23334677888999999999988777778888889999999887 4553322 34578899999
Q ss_pred EEcCCCccCCCChhh-hhC-CCCCceEecCCcc----CCcCCcccccCCCccEEEecCCcCC-CCCCccccccccccEEE
Q 038106 239 LELGGNKLFGSIPAC-FSN-LASLRILSLGSNE----LTSIPLTFWNLNNILYLNFSSNFFT-APLPLEIGNLKVLVGMD 311 (349)
Q Consensus 239 L~l~~~~~~~~~~~~-~~~-~~~L~~L~l~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ 311 (349)
|+++.|....+.+.. +.+ -+.|..|+++++. ...+..-..+|++|.+|+++.|... ......+-+++.|+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999998765433222 222 2678889998873 2234545678899999999888543 33334566788999999
Q ss_pred ccCCeeee-ccCcccccCCCCceEecCCc
Q 038106 312 FSMNNFSG-VIPTEIGGLKNLEYLFLGYN 339 (349)
Q Consensus 312 l~~~~~~~-~~~~~l~~~~~L~~l~l~~~ 339 (349)
++.|+... ...-.+...|+|.+|++.||
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99987531 22223456688999998887
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=2.4e-10 Score=101.03 Aligned_cols=151 Identities=34% Similarity=0.521 Sum_probs=66.2
Q ss_pred CCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecC
Q 038106 187 NLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLG 266 (349)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 266 (349)
+|+.|++++|.+. ..+..+..++.|+.|++++|.+. ..+......+.|+.|+++++.+. ..+........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 4444555444444 22223334445555555555444 22222224444555555555443 222222223335555555
Q ss_pred CccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccccC
Q 038106 267 SNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 343 (349)
Q Consensus 267 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~ 343 (349)
+|.+...+..+..+.++..+.+.++.+.. .+..+..++++++|++++|.+... +. +....+++.++++++++..
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred CCcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccc
Confidence 55444444344444444444444444443 233344444455555555555422 12 4444555555555554443
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=1e-11 Score=103.36 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred CCCCCCEEEcCCcc-CCCccchhc-cccCCCCeeecCCCc-CCCCCchhh-ccCCcccEEEcCCCccCCC--ChhhhhCC
Q 038106 184 NLTNLTTIDLGGNM-LNGSIPITL-SKLQKLQGLRFEDNK-LEGSIPDSI-CRLTELYELELGGNKLFGS--IPACFSNL 257 (349)
Q Consensus 184 ~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 257 (349)
.+..|+.++.+++. +++.....+ .++.+|+.+-+.+|. ++......+ .+++.|+.+++.++..... ....-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34555666655442 222222222 244566666666653 222222222 3456666666666543211 11122356
Q ss_pred CCCceEecCCccCC-c-----CCcccccCCCccEEEecCCcCCC-CCCccccccccccEEEccCCe
Q 038106 258 ASLRILSLGSNELT-S-----IPLTFWNLNNILYLNFSSNFFTA-PLPLEIGNLKVLVGMDFSMNN 316 (349)
Q Consensus 258 ~~L~~L~l~~~~~~-~-----~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 316 (349)
+.|+.+.+++|... + +...-.....++.+.+++++... .....+..+++|+++++.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66777777666332 2 22233445667777777775443 334455666777777777664
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=6.9e-10 Score=69.51 Aligned_cols=61 Identities=36% Similarity=0.463 Sum_probs=50.6
Q ss_pred CCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecCCccc
Q 038106 281 NNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 281 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~~~~~ 341 (349)
|+|++|++++|.+....+..+..+++|++|++++|.+....+.++..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5688888888888876667788888888888888888877777888888888888888875
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=2.3e-09 Score=94.82 Aligned_cols=150 Identities=32% Similarity=0.499 Sum_probs=78.7
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
+++.++++++.+... +..+..+++|+.|++++|++. ..+......+.++.|++++|.+. ..+........|+++.++
T Consensus 141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 455555555554422 123455566666666666655 22222224456666666666555 333333334446666666
Q ss_pred CCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeee
Q 038106 243 GNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
+|... ..+..+....++..+.+.++++..++..+..+++++.|++++|.+..... +....+++.|+++++.+.
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 65322 22333445555555556666555555555555666666666666655322 555566666666665554
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=5.5e-09 Score=96.88 Aligned_cols=112 Identities=27% Similarity=0.397 Sum_probs=91.5
Q ss_pred cccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCc-CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEcc
Q 038106 235 ELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFS 313 (349)
Q Consensus 235 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 313 (349)
.++.|+++++.+....+..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788888888877778888888999999999988874 77778888899999999998888788888888999999999
Q ss_pred CCeeeeccCcccccC-CCCceEecCCccccCCCC
Q 038106 314 MNNFSGVIPTEIGGL-KNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 314 ~~~~~~~~~~~l~~~-~~L~~l~l~~~~~~~~~p 346 (349)
+|.+.+.+|..+... .++..+++.+|+..+..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 998888888777553 467788888887655444
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=6.8e-11 Score=102.38 Aligned_cols=194 Identities=28% Similarity=0.413 Sum_probs=136.2
Q ss_pred CCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCee
Q 038106 136 KSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGL 215 (349)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 215 (349)
.--...+++.|++...... . .. ...++.+.+..+.+. .++..+..+..|+.++++.|+++ ..+..++. --|+.|
T Consensus 75 tdt~~aDlsrNR~~elp~~-~-~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEE-A-CA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVL 148 (722)
T ss_pred cchhhhhccccccccCchH-H-HH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeE
Confidence 3334556777776533221 1 11 135666777666665 45666788888888888888887 44444444 347888
Q ss_pred ecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCC
Q 038106 216 RFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (349)
.+++|+++ .+|..++..+.|..|+.+.|.+- ..+..+..+.+|+.|++..|.+..+|..+.. -.|..|++++|++..
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~ 225 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISY 225 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceee
Confidence 88888887 67777778888888888888775 4566677888888889988888888877764 447888889888887
Q ss_pred CCCccccccccccEEEccCCeeeeccCccc---ccCCCCceEecCCcc
Q 038106 296 PLPLEIGNLKVLVGMDFSMNNFSGVIPTEI---GGLKNLEYLFLGYNR 340 (349)
Q Consensus 296 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~l~l~~~~ 340 (349)
+|..|..+..|++|-|.+|.+.. -|..+ ++..=.++|+..-|+
T Consensus 226 -iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 -LPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -cchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 77778888889999998888763 33222 233345677777774
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.87 E-value=4e-10 Score=89.01 Aligned_cols=244 Identities=18% Similarity=0.194 Sum_probs=129.6
Q ss_pred hhccccccEEecCCccccCc----cchhhccccccceeeccCceec---cc-------cCccccccCCcccEEeccCCcC
Q 038106 6 IGNLRNLERLGLGLNKLIGT----VPAAIFNVSTLKSLELQDNSLF---GS-------ISSIIDVRLPNLERLLLWGNNF 71 (349)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~-------~~~~~~~~l~~L~~L~l~~~~~ 71 (349)
+..+..+..+++++|.+... +...+.+-.+|+..++++-... +. ..... -+||+|++.++++|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH-hcCCcceeeecccccc
Confidence 34466777778887776533 3333444566777777653211 11 11112 2677888888887776
Q ss_pred CCccc----hhhccCCCceEEEccCCcccccccccc-------------cCCCCCCEEEccCCcccCCCccchhcccccC
Q 038106 72 SGTIP----RFIFNASKLSILEFSKNSFSGFIPNTF-------------GNLRNLQKLRLYDNYLTSSTPELSFLSSLSN 134 (349)
Q Consensus 72 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 134 (349)
....| +.+.+...|++|.+++|.+......-+ ..-|.|+.+.+..|++...+.. .+...+.+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~-~~a~~l~s 183 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE-LSAALLES 183 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH-HHHHHHHh
Confidence 65444 334456777788887776653221111 2346666666666665554332 22333444
Q ss_pred CCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCcc----chhccccC
Q 038106 135 CKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSI----PITLSKLQ 210 (349)
Q Consensus 135 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~ 210 (349)
...|+.+.+.+|.+... .+..| ....+..+.+|+.||+.+|-++... ...++.++
T Consensus 184 h~~lk~vki~qNgIrpe-----------gv~~L----------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 184 HENLKEVKIQQNGIRPE-----------GVTML----------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred hcCceeEEeeecCcCcc-----------hhHHH----------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 45666666666655421 00000 1112345567777777777665322 23444556
Q ss_pred CCCeeecCCCcCCCCCchhh------ccCCcccEEEcCCCccCCCC-----hhhh--hCCCCCceEecCCccCCc
Q 038106 211 KLQGLRFEDNKLEGSIPDSI------CRLTELYELELGGNKLFGSI-----PACF--SNLASLRILSLGSNELTS 272 (349)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~-----~~~~--~~~~~L~~L~l~~~~~~~ 272 (349)
.|+.|.+.+|-++......+ ...|+|+.|...+|...... ...+ ..+|-|..+.+++|.+..
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 67777777776553322221 13466667666665432211 1111 245666666777776665
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=5.1e-09 Score=97.06 Aligned_cols=91 Identities=31% Similarity=0.514 Sum_probs=84.0
Q ss_pred CCceEecCCccCCc-CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCCeeeeccCcccccCCCCceEecC
Q 038106 259 SLRILSLGSNELTS-IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFSGVIPTEIGGLKNLEYLFLG 337 (349)
Q Consensus 259 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~l~l~ 337 (349)
.++.|+++++.+.. +|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999876 78888999999999999999998888889999999999999999999999999999999999999
Q ss_pred CccccCCCCCCC
Q 038106 338 YNRLQGSIPDSF 349 (349)
Q Consensus 338 ~~~~~~~~p~~~ 349 (349)
+|+++|.+|.++
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 999999999753
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=5.5e-10 Score=96.92 Aligned_cols=158 Identities=25% Similarity=0.377 Sum_probs=126.2
Q ss_pred CChhhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhcc
Q 038106 2 IPPEIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN 81 (349)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (349)
+|.+++++..|++++++.|++. .+|..+..|| |+.|-+++|++ ...|..+. ..+.|..|+.+.|.+. ..|..++.
T Consensus 113 ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~ 187 (722)
T KOG0532|consen 113 IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGY 187 (722)
T ss_pred cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc-ccCCcccc-cchhHHHhhhhhhhhh-hchHHhhh
Confidence 6788899999999999999876 7777777777 88999999988 66666666 8899999999999887 67778888
Q ss_pred CCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcc
Q 038106 82 ASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS 161 (349)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 161 (349)
+.+|+.|++..|++.. ++..+..+ .|..|+++.|++..++.. +.+++.|++|.+.+|.+......-...+..
T Consensus 188 l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~iPv~------fr~m~~Lq~l~LenNPLqSPPAqIC~kGkV 259 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYLPVD------FRKMRHLQVLQLENNPLQSPPAQICEKGKV 259 (722)
T ss_pred HHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeecchh------hhhhhhheeeeeccCCCCCChHHHHhccce
Confidence 9999999999998874 55666644 499999999999988865 788999999999999987654443444444
Q ss_pred cccCeeeecCc
Q 038106 162 HSLEDFKMHNC 172 (349)
Q Consensus 162 ~~l~~L~l~~~ 172 (349)
+-.++|+..-|
T Consensus 260 HIFKyL~~qA~ 270 (722)
T KOG0532|consen 260 HIFKYLSTQAC 270 (722)
T ss_pred eeeeeecchhc
Confidence 45577777766
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=8.4e-09 Score=64.53 Aligned_cols=60 Identities=38% Similarity=0.445 Sum_probs=36.8
Q ss_pred ccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCc
Q 038106 10 RNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNN 70 (349)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 70 (349)
|+|++|++++|++....+..|..+++|++|++++|.+....+. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 4566677777666644445666667777777776666433333 33466667776666664
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.78 E-value=5.9e-10 Score=88.06 Aligned_cols=248 Identities=20% Similarity=0.194 Sum_probs=144.8
Q ss_pred cCCcccEEeccCCcCCCccchhhc----cCCCceEEEccCCccc---cc-------ccccccCCCCCCEEEccCCcccCC
Q 038106 57 RLPNLERLLLWGNNFSGTIPRFIF----NASKLSILEFSKNSFS---GF-------IPNTFGNLRNLQKLRLYDNYLTSS 122 (349)
Q Consensus 57 ~l~~L~~L~l~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~---~~-------~~~~~~~~~~L~~L~l~~~~~~~~ 122 (349)
.+..+..+++++|.+......+++ +-++|+..+++.-..+ .. ...++.+||+|+..++++|-+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 477888888888888766555444 4467777777653221 11 223456778888888888866543
Q ss_pred CccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCcc
Q 038106 123 TPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSI 202 (349)
Q Consensus 123 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 202 (349)
.+. .....+.+...|++|.+++|.+........-. .+..| ..-.....-|.|+++++..|++....
T Consensus 108 ~~e-~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk----al~~l---------a~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 108 FPE-ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK----ALFHL---------AYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred cch-HHHHHHhcCCCceeEEeecCCCCccchhHHHH----HHHHH---------HHHhhhccCCCceEEEeccchhccCc
Confidence 322 22234566677778887777765432221110 00000 01122345688999999998876322
Q ss_pred c----hhccccCCCCeeecCCCcCCCCCch-----hhccCCcccEEEcCCCccCCCCh----hhhhCCCCCceEecCCcc
Q 038106 203 P----ITLSKLQKLQGLRFEDNKLEGSIPD-----SICRLTELYELELGGNKLFGSIP----ACFSNLASLRILSLGSNE 269 (349)
Q Consensus 203 ~----~~l~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 269 (349)
. ..+.....|+.+.+..|.+.-.... .+..+.+|+.||+.+|.++.... ..+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 2 2333446888999998887643221 22356788888888887763322 233445667888888886
Q ss_pred CCc--CCccc-----ccCCCccEEEecCCcCCCCCCcc-----c--cccccccEEEccCCeee
Q 038106 270 LTS--IPLTF-----WNLNNILYLNFSSNFFTAPLPLE-----I--GNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 270 ~~~--~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~L~l~~~~~~ 318 (349)
++. ....+ ...|+|..|...+|......... + .++|-|..|.+.||++.
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 654 11111 12467777777777654432211 1 24566666677777665
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.4e-09 Score=87.09 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=111.1
Q ss_pred EeCCCCccccccCCccccCcccccCeeeecCccccc--CcchhccCCCCCCEEEcCCccCCCccchhc-cccCCCCeeec
Q 038106 141 IGLSNNPLDCILPKTSIGNLSHSLEDFKMHNCNVSG--GIPEEISNLTNLTTIDLGGNMLNGSIPITL-SKLQKLQGLRF 217 (349)
Q Consensus 141 L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l 217 (349)
+-+.++.+........+....+.++.+++.+|.+.+ .+...+..+|+|+.|+++.|.+...+. .+ ....+|+.|.+
T Consensus 50 lvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 50 LVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVL 128 (418)
T ss_pred heecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEE
Confidence 333444443333333333334455555555555442 233445678888888888887774333 23 35577888888
Q ss_pred CCCcCCCC-CchhhccCCcccEEEcCCCccCC--CChhhhhC-CCCCceEecCCccCCc---CCcccccCCCccEEEecC
Q 038106 218 EDNKLEGS-IPDSICRLTELYELELGGNKLFG--SIPACFSN-LASLRILSLGSNELTS---IPLTFWNLNNILYLNFSS 290 (349)
Q Consensus 218 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~ 290 (349)
.|..+... ....+..+|.+++|+++.|.... ........ .+.++++....|.... .......+|++..+-+..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 87765432 22344567778888887773211 11111111 1355566665554432 111223456777777777
Q ss_pred CcCCCCCC-ccccccccccEEEccCCeeee-ccCcccccCCCCceEecCCcccc
Q 038106 291 NFFTAPLP-LEIGNLKVLVGMDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 291 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~l~l~~~~~~ 342 (349)
|++..... .....+|.+.-|+++.+++.. ....++..+++|..|.++++|+.
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 76655332 234456666677777777654 22245666777777777777764
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=2.6e-10 Score=95.23 Aligned_cols=298 Identities=17% Similarity=0.124 Sum_probs=142.2
Q ss_pred cccEEecCCccccC--ccchhhccccccceeeccCce-eccccCccccccCCcccEEeccCC-cCCCccchhh-ccCCCc
Q 038106 11 NLERLGLGLNKLIG--TVPAAIFNVSTLKSLELQDNS-LFGSISSIIDVRLPNLERLLLWGN-NFSGTIPRFI-FNASKL 85 (349)
Q Consensus 11 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~-~~~~~L 85 (349)
-|+.|++++|.-.+ .+-.....||++++|++.++. +++.....+...+++|+++++..| .+++.....+ ..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35666666665332 222334456666666666654 333344444455666666666664 2332222222 245666
Q ss_pred eEEEccCCc-cccccc-ccccCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccc
Q 038106 86 SILEFSKNS-FSGFIP-NTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHS 163 (349)
Q Consensus 86 ~~L~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 163 (349)
++++++.+. +.+... ....++..++.+...+|.-... + .+...-..++-+..+++..|..........+....+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--E-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--H-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 666666664 332111 1223444455555555432111 1 1111112233344444444433222222233333445
Q ss_pred cCeeeecCcccccCcc-hh-ccCCCCCCEEEcCCcc-CCCccchhcc-ccCCCCeeecCCCcCC--CCCchhhccCCccc
Q 038106 164 LEDFKMHNCNVSGGIP-EE-ISNLTNLTTIDLGGNM-LNGSIPITLS-KLQKLQGLRFEDNKLE--GSIPDSICRLTELY 237 (349)
Q Consensus 164 l~~L~l~~~~~~~~~~-~~-l~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~ 237 (349)
++.+..+++...+..+ .. ...+++|+.+-+.+++ +++.....+. ++++|+.+++.++... ..+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 6666666665432221 11 2355677777776664 3322222232 4566777777766432 12223334667777
Q ss_pred EEEcCCCccC-CCChhhh----hCCCCCceEecCCccCCc--CCcccccCCCccEEEecCCc-CCCCCCccc-ccccccc
Q 038106 238 ELELGGNKLF-GSIPACF----SNLASLRILSLGSNELTS--IPLTFWNLNNILYLNFSSNF-FTAPLPLEI-GNLKVLV 308 (349)
Q Consensus 238 ~L~l~~~~~~-~~~~~~~----~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~ 308 (349)
.+.+++|... ++....+ .++..++.+.+++|+... .-..+..|++|+.+++.+|+ ++.+....+ ..+|+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 7777776532 2211112 234566777777775443 33345566777777776663 333322222 2455554
Q ss_pred EEE
Q 038106 309 GMD 311 (349)
Q Consensus 309 ~L~ 311 (349)
...
T Consensus 456 v~a 458 (483)
T KOG4341|consen 456 VHA 458 (483)
T ss_pred ehh
Confidence 444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.4e-09 Score=85.81 Aligned_cols=223 Identities=16% Similarity=0.136 Sum_probs=126.6
Q ss_pred CceEEEccCCcccccccc-cc-cCCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcc
Q 038106 84 KLSILEFSKNSFSGFIPN-TF-GNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLS 161 (349)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 161 (349)
.++.+.+.++.+...... .+ ..+..++++++.+|.+.++.... .-+.++|.|+.|+++.|.+........ .+ .
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~---~ile~lP~l~~LNls~N~L~s~I~~lp-~p-~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG---AILEQLPALTTLNLSCNSLSSDIKSLP-LP-L 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH---HHHhcCccceEeeccCCcCCCccccCc-cc-c
Confidence 344445555554432111 11 23456666666666665543322 235566777777777766654322211 01 1
Q ss_pred cccCeeeecCcccc-cCcchhccCCCCCCEEEcCCccCCCc--cchhccc-cCCCCeeecCCCcCCC--CCchhhccCCc
Q 038106 162 HSLEDFKMHNCNVS-GGIPEEISNLTNLTTIDLGGNMLNGS--IPITLSK-LQKLQGLRFEDNKLEG--SIPDSICRLTE 235 (349)
Q Consensus 162 ~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~-~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 235 (349)
.+++.+.+.|..+. ......+..+|.+++|.++.|.+... ....... -+.++++++.+|.... .....-.-+|+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 36677777666543 22334466788888898888844311 1111222 2356777777764320 11122245688
Q ss_pred ccEEEcCCCccCCCC-hhhhhCCCCCceEecCCccCCcCCc--ccccCCCccEEEecCCcCCCCCCc------ccccccc
Q 038106 236 LYELELGGNKLFGSI-PACFSNLASLRILSLGSNELTSIPL--TFWNLNNILYLNFSSNFFTAPLPL------EIGNLKV 306 (349)
Q Consensus 236 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~ 306 (349)
+..+.+..|.+.+.. -.....+|.+..|+++.+++.+.+. .+.+++.|..|++.++++.+.... .++.+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 888888888664332 2334556777788888888877432 466788899999999888764332 2456777
Q ss_pred ccEEE
Q 038106 307 LVGMD 311 (349)
Q Consensus 307 L~~L~ 311 (349)
++.|+
T Consensus 281 v~vLN 285 (418)
T KOG2982|consen 281 VQVLN 285 (418)
T ss_pred eEEec
Confidence 77776
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=3e-09 Score=94.30 Aligned_cols=35 Identities=37% Similarity=0.461 Sum_probs=17.4
Q ss_pred CceEecCCccCCcCCcccccCCCccEEEecCCcCC
Q 038106 260 LRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFT 294 (349)
Q Consensus 260 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 294 (349)
|+.+++.++++...+..+..+..++.+++..+.+.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccc
Confidence 45555555555544333444455555555554443
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.49 E-value=2.1e-08 Score=88.86 Aligned_cols=84 Identities=27% Similarity=0.396 Sum_probs=40.7
Q ss_pred cCCcccEEeccCCcCCCccchhhccCCCceEEEccCCcccccccccccCCCCCCEEEccCCcccCCCccchhcccccCCC
Q 038106 57 RLPNLERLLLWGNNFSGTIPRFIFNASKLSILEFSKNSFSGFIPNTFGNLRNLQKLRLYDNYLTSSTPELSFLSSLSNCK 136 (349)
Q Consensus 57 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 136 (349)
.+.+|+.+++.++.+. .....+..+++|+.|++++|.|+.. ..+..++.|+.|.+.+|.+..+. .+..++
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~-------~~~~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDIS-------GLESLK 162 (414)
T ss_pred cccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhcc-------CCccch
Confidence 4555555555555544 2222244455555555555555432 33344444555555555554433 233345
Q ss_pred CCcEEeCCCCcccc
Q 038106 137 SLTHIGLSNNPLDC 150 (349)
Q Consensus 137 ~L~~L~l~~~~~~~ 150 (349)
.|+.+++++|.+..
T Consensus 163 ~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 163 SLKLLDLSYNRIVD 176 (414)
T ss_pred hhhcccCCcchhhh
Confidence 55555555555543
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.42 E-value=5.9e-08 Score=90.04 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=64.5
Q ss_pred ccccEEecCCccc-cCccc-hhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCCceE
Q 038106 10 RNLERLGLGLNKL-IGTVP-AAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASKLSI 87 (349)
Q Consensus 10 ~~L~~L~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 87 (349)
.+|++|++++... ....+ .....+|.|+.|.+++-.+........+..+|+|..||+++++++.. .++.++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3555666655331 11122 22234566666666655543333344444566666666666655533 44555566666
Q ss_pred EEccCCcccc-cccccccCCCCCCEEEccCCcccCCCc-cchhcccccCCCCCcEEeCCCCccc
Q 038106 88 LEFSKNSFSG-FIPNTFGNLRNLQKLRLYDNYLTSSTP-ELSFLSSLSNCKSLTHIGLSNNPLD 149 (349)
Q Consensus 88 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~ 149 (349)
|.+.+-.+.. .....+-.+.+|+.|+++......... ...+++--..+|.|+.||.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5555544432 112233445666666665543322220 0011111223555666666555544
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=5.6e-09 Score=93.40 Aligned_cols=123 Identities=30% Similarity=0.327 Sum_probs=59.5
Q ss_pred CeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcc-cccCCCccEEEecCC
Q 038106 213 QGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLT-FWNLNNILYLNFSSN 291 (349)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 291 (349)
...+++.|.+. .+...+.-++.++.|++++|++.+. ..+..++.|++|+|++|.+..+|.. ...|. |..|.+.||
T Consensus 167 ~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 167 ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 33444444433 2333444445555566666555422 2445555666666666655555442 12233 556666665
Q ss_pred cCCCCCCccccccccccEEEccCCeeeec-cCcccccCCCCceEecCCccc
Q 038106 292 FFTAPLPLEIGNLKVLVGMDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRL 341 (349)
Q Consensus 292 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~l~l~~~~~ 341 (349)
-+.. ...+.++++|+-||+++|-+.+. -..-+..+..|+.|.|.|||+
T Consensus 243 ~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 243 ALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5543 12344555555666666544431 111223344555666666654
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=9.7e-09 Score=91.96 Aligned_cols=126 Identities=25% Similarity=0.297 Sum_probs=72.7
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchh-hccCCcccEEEc
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDS-ICRLTELYELEL 241 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 241 (349)
.|...+.++|.+. .+...+.-++.++.|+++.|++.+.. .+..+++|++|++++|.+. .+|.. ..++. |..|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 3444444555444 23344555667777777777766332 5566677777777777665 23322 22333 677777
Q ss_pred CCCccCCCChhhhhCCCCCceEecCCccCCcCCc--ccccCCCccEEEecCCcCCC
Q 038106 242 GGNKLFGSIPACFSNLASLRILSLGSNELTSIPL--TFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~ 295 (349)
.+|.++. ...+.++.+|+.|++++|-+.+..+ .++.+..|+.|+|.||++-.
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7776542 2345666777777777776555322 34455667777777776544
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=7.6e-08 Score=68.33 Aligned_cols=106 Identities=24% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCEEEcCCccCCCccch---hccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEe
Q 038106 188 LTTIDLGGNMLNGSIPI---TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILS 264 (349)
Q Consensus 188 L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 264 (349)
+..++++.|++. ..++ .+.....|+..++++|.+....+..-..++.++.|++++|.+. ..|+.++.++.|+.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445667777654 2222 2334456677778887777444444445667777777777776 3455577777777777
Q ss_pred cCCccCCcCCcccccCCCccEEEecCCcCCC
Q 038106 265 LGSNELTSIPLTFWNLNNILYLNFSSNFFTA 295 (349)
Q Consensus 265 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 295 (349)
+++|++...|..+..+.++-+|+..++....
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCcccc
Confidence 7777777777666666677777777766655
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=3.1e-07 Score=85.31 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=98.9
Q ss_pred CCCCEEEcCCccCC-Cccchh-ccccCCCCeeecCCCcCC-CCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCce
Q 038106 186 TNLTTIDLGGNMLN-GSIPIT-LSKLQKLQGLRFEDNKLE-GSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRI 262 (349)
Q Consensus 186 ~~L~~L~l~~~~~~-~~~~~~-l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 262 (349)
.+|++|+++|.... ...+.. -..+|+|+.|.+.+-.+. +.....+.++|+|..||++++.+... ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57888888775433 222222 235688888888886543 23345566888888888888877644 66778888888
Q ss_pred EecCCccCCcCC--cccccCCCccEEEecCCcCCCCC--Cc----cccccccccEEEccCCeeeeccCccc-ccCCCCce
Q 038106 263 LSLGSNELTSIP--LTFWNLNNILYLNFSSNFFTAPL--PL----EIGNLKVLVGMDFSMNNFSGVIPTEI-GGLKNLEY 333 (349)
Q Consensus 263 L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~~----~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~ 333 (349)
|.+.+-.+.... ..+..+++|+.|+++........ .. .-..+|+|+.||.+++.+.....+.+ ...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 888877776632 24556888888888877655432 11 11246888888888887766444333 44566776
Q ss_pred EecCCcc
Q 038106 334 LFLGYNR 340 (349)
Q Consensus 334 l~l~~~~ 340 (349)
+.+-+|.
T Consensus 280 i~~~~~~ 286 (699)
T KOG3665|consen 280 IAALDCL 286 (699)
T ss_pred hhhhhhh
Confidence 6655443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.16 E-value=1.2e-07 Score=67.42 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=48.7
Q ss_pred cCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccEEE
Q 038106 232 RLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMD 311 (349)
Q Consensus 232 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 311 (349)
....|+..++++|.+.+.........+-+..+++.+|++.++|..+..++.|+.++++.|++.. .+..+..+.++-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhc
Confidence 3445555666666654333332234455666666666666666666666666666666666655 333344455666666
Q ss_pred ccCCeee
Q 038106 312 FSMNNFS 318 (349)
Q Consensus 312 l~~~~~~ 318 (349)
..+|...
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 6666554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=4.2e-05 Score=65.99 Aligned_cols=131 Identities=17% Similarity=0.265 Sum_probs=68.5
Q ss_pred cccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCC-cCCCCCchhhccCCcccEEE
Q 038106 162 HSLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDN-KLEGSIPDSICRLTELYELE 240 (349)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 240 (349)
.+++.|++++|.+.. +|. -.++|++|.++++.-....+..++ ++|+.|.+++| .+. .+| ++|+.|+
T Consensus 52 ~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccceEE
Confidence 366777777775552 231 223577777766543334444332 56777777776 333 232 3466666
Q ss_pred cCCCccCCCChhhhhCC-CCCceEecCCccCC-c--CCcccccCCCccEEEecCCcCCCCCCccccccccccEEEccCC
Q 038106 241 LGGNKLFGSIPACFSNL-ASLRILSLGSNELT-S--IPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMN 315 (349)
Q Consensus 241 l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 315 (349)
+.++.... +..+ ++|+.|.+.++... . ++. .-.++|++|.+.+|.... .+..+. .+|+.|+++.+
T Consensus 119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 65543321 1111 35666666432211 1 111 112578888888776543 333333 57777777665
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=7.7e-06 Score=46.79 Aligned_cols=34 Identities=38% Similarity=0.512 Sum_probs=12.9
Q ss_pred CceEecCCccCCcCCcccccCCCccEEEecCCcC
Q 038106 260 LRILSLGSNELTSIPLTFWNLNNILYLNFSSNFF 293 (349)
Q Consensus 260 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 293 (349)
|++|++++|++++++..+..+++|++|++++|++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 3344444444444333333444444444444433
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=3.8e-06 Score=48.05 Aligned_cols=36 Identities=39% Similarity=0.482 Sum_probs=15.6
Q ss_pred CccEEEecCCcCCCCCCccccccccccEEEccCCeee
Q 038106 282 NILYLNFSSNFFTAPLPLEIGNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 282 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 318 (349)
+|++|++++|.+.+ ++..+.++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34445555554443 2323444444444444444443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1.7e-05 Score=60.46 Aligned_cols=101 Identities=24% Similarity=0.255 Sum_probs=43.1
Q ss_pred CCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCC-ChhhhhCCCCCceEecC
Q 038106 188 LTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGS-IPACFSNLASLRILSLG 266 (349)
Q Consensus 188 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~ 266 (349)
...+|+++|++. ....|+.++.|.+|.+++|.++...|..-..+++|..|.+.+|.+-.. ....++.||.|++|.+-
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 344555555443 112344445555555555555543333333344455555555443211 11223444455555554
Q ss_pred CccCCcCCc----ccccCCCccEEEecC
Q 038106 267 SNELTSIPL----TFWNLNNILYLNFSS 290 (349)
Q Consensus 267 ~~~~~~~~~----~~~~~~~L~~L~l~~ 290 (349)
+|++..... .+..+|+|+.|++.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 444443211 233444444444444
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=7.6e-05 Score=64.46 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCCCCCEEEccCCcccCCCccchhcccccCCCCCcEEeCCCCccccccCCccccCcccccCeeeecCc
Q 038106 105 NLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKSLTHIGLSNNPLDCILPKTSIGNLSHSLEDFKMHNC 172 (349)
Q Consensus 105 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 172 (349)
.+.+++.|++++|.+..++. + .++|+.|.+++|.-....+. .+|.+|+.|.+.+|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-------L--P~sLtsL~Lsnc~nLtsLP~----~LP~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-------L--PNELTEITIENCNNLTTLPG----SIPEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-------C--CCCCcEEEccCCCCcccCCc----hhhhhhhheEccCc
Confidence 35667777777665554431 1 23466666666443322221 23445666666655
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.89 E-value=2.8e-06 Score=77.39 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=15.8
Q ss_pred CCCceEEEccCCc-ccccccccccC-CCCCCEEEccCCc
Q 038106 82 ASKLSILEFSKNS-FSGFIPNTFGN-LRNLQKLRLYDNY 118 (349)
Q Consensus 82 ~~~L~~L~l~~~~-~~~~~~~~~~~-~~~L~~L~l~~~~ 118 (349)
+++|+.++++++. ++......+.. +++|++|.+..|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 3455555555544 33222222221 4555555544443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=3.3e-05 Score=59.00 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=63.8
Q ss_pred ccCeeeecCcccccCcchhccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCC-chhhccCCcccEEEc
Q 038106 163 SLEDFKMHNCNVSGGIPEEISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSI-PDSICRLTELYELEL 241 (349)
Q Consensus 163 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 241 (349)
....++++.+.+... ..+..+++|.+|.+.+|+++...+..-..++++..|.+.+|.+.+.. ...+..+|.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455667776665522 23566777777777777777555544445567777777777665321 123456777777777
Q ss_pred CCCccCCCC---hhhhhCCCCCceEecCCccC
Q 038106 242 GGNKLFGSI---PACFSNLASLRILSLGSNEL 270 (349)
Q Consensus 242 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~ 270 (349)
-+|.....- .-.+..+|+|+.|++++-.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 777654211 11234567777777776543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.72 E-value=0.00013 Score=53.36 Aligned_cols=106 Identities=22% Similarity=0.250 Sum_probs=50.6
Q ss_pred hhhccccccEEecCCccccCccchhhccccccceeeccCceeccccCccccccCCcccEEeccCCcCCCccchhhccCCC
Q 038106 5 EIGNLRNLERLGLGLNKLIGTVPAAIFNVSTLKSLELQDNSLFGSISSIIDVRLPNLERLLLWGNNFSGTIPRFIFNASK 84 (349)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (349)
+|.++.+|+.+.+.. .+...-...|..+++|+.+.+..+ + .......+..++.++.+.+.. .+.......|..+.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-L-TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-T-SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-c-cccceeeeecccccccccccc-ccccccccccccccc
Confidence 466777777777764 344344456677777777777664 3 333444444666777777754 232233344555677
Q ss_pred ceEEEccCCcccccccccccCCCCCCEEEccC
Q 038106 85 LSILEFSKNSFSGFIPNTFGNLRNLQKLRLYD 116 (349)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 116 (349)
|+.+.+..+ +.......+.++ +++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777777554 333344456665 677766654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.68 E-value=9.7e-05 Score=54.04 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=20.8
Q ss_pred ccCCCCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcC
Q 038106 182 ISNLTNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELG 242 (349)
Q Consensus 182 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 242 (349)
+..+.+|+.+.+.. .+.......|..+.+++.+.+.++ +......++.++++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44445555555543 232233334444445555555442 332233334444444444443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.63 E-value=4.2e-06 Score=76.21 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=28.5
Q ss_pred cccCeeeecCcc-cccCcchhcc-CCCCCCEEEcCCcc-CCCccch-hccccCCCCeeecCCCc
Q 038106 162 HSLEDFKMHNCN-VSGGIPEEIS-NLTNLTTIDLGGNM-LNGSIPI-TLSKLQKLQGLRFEDNK 221 (349)
Q Consensus 162 ~~l~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~-~l~~~~~L~~L~l~~~~ 221 (349)
.+++.++++++. +++..-..+. .+++|++|.+.++. +++.... ....++.|++|++++|.
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 355555555555 3333322222 25566666655554 3433222 22345556666666553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=2.2e-06 Score=68.56 Aligned_cols=99 Identities=21% Similarity=0.147 Sum_probs=60.3
Q ss_pred cCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCc--ccccCCCccEE
Q 038106 209 LQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPL--TFWNLNNILYL 286 (349)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L 286 (349)
+.+.++|...||++++. .....++.|+.|.|+-|.+.. ...+..|.+|+.|++..|.|.++.+ -+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566777777766532 334567777777777776642 3445667777777777777766544 24566777777
Q ss_pred EecCCcCCCCCCcc-----ccccccccEEE
Q 038106 287 NFSSNFFTAPLPLE-----IGNLKVLVGMD 311 (349)
Q Consensus 287 ~l~~~~~~~~~~~~-----~~~~~~L~~L~ 311 (349)
.|..|+-.+..+.. +..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77776655543322 23456666655
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=9.1e-06 Score=65.12 Aligned_cols=80 Identities=29% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCCCEEEcCCccCCCccchhccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCC-hhhhhCCCCCceEe
Q 038106 186 TNLTTIDLGGNMLNGSIPITLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSI-PACFSNLASLRILS 264 (349)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 264 (349)
.+.++|++.||++.+.. .....+.|+.|.|+-|.++.. ..+..|++|++|.|..|.+.+.. ...+.++|+|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34445555555544211 122445555555555555422 22445555555555555443211 22334455555555
Q ss_pred cCCcc
Q 038106 265 LGSNE 269 (349)
Q Consensus 265 l~~~~ 269 (349)
|..|+
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 55543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=5.7e-05 Score=60.12 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCeeecCCCcCCCCCchhhccCCcccEEEcCCCc--cCCCChhhhhCCCCCceEecCCccCCcCCc--ccccCCCccEE
Q 038106 211 KLQGLRFEDNKLEGSIPDSICRLTELYELELGGNK--LFGSIPACFSNLASLRILSLGSNELTSIPL--TFWNLNNILYL 286 (349)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L 286 (349)
.+..+.+.++.++. ...+..+++|+.|.++.|+ ....+......+|+|+++++++|++..+.. .+..+++|..|
T Consensus 44 ~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 44444444444331 1223445556666666652 222222233344666666666665554211 23344455555
Q ss_pred EecCCcCCC
Q 038106 287 NFSSNFFTA 295 (349)
Q Consensus 287 ~l~~~~~~~ 295 (349)
++.+|..+.
T Consensus 122 dl~n~~~~~ 130 (260)
T KOG2739|consen 122 DLFNCSVTN 130 (260)
T ss_pred hcccCCccc
Confidence 555555444
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00036 Score=55.70 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=27.0
Q ss_pred cCCCCCCEEEcCCc--cCCCccchhccccCCCCeeecCCCcCCC-CCchhhccCCcccEEEcCCCc
Q 038106 183 SNLTNLTTIDLGGN--MLNGSIPITLSKLQKLQGLRFEDNKLEG-SIPDSICRLTELYELELGGNK 245 (349)
Q Consensus 183 ~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 245 (349)
..+++|++|.++.| +....+......+++|+++.+++|.+.. .....+..+.+|..|++..|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 34455555555555 3332222222233555555555554431 011122334444455555544
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.46 E-value=3.5e-06 Score=75.10 Aligned_cols=333 Identities=20% Similarity=0.161 Sum_probs=155.9
Q ss_pred ccEEecCCccccCc----cchhhccccccceeeccCceeccccCccccccC----CcccEEeccCCcCCCcc----chhh
Q 038106 12 LERLGLGLNKLIGT----VPAAIFNVSTLKSLELQDNSLFGSISSIIDVRL----PNLERLLLWGNNFSGTI----PRFI 79 (349)
Q Consensus 12 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~----~~~~ 79 (349)
+..+.+.+|.+... +...+...+.|..|++++|.+.+.....+...+ ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666655432 334455666777777777766433222222222 33556666666555432 2333
Q ss_pred ccCCCceEEEccCCcccc----ccccccc----CCCCCCEEEccCCcccCCCccchhcccccCCCC-CcEEeCCCCcccc
Q 038106 80 FNASKLSILEFSKNSFSG----FIPNTFG----NLRNLQKLRLYDNYLTSSTPELSFLSSLSNCKS-LTHIGLSNNPLDC 150 (349)
Q Consensus 80 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~ 150 (349)
.....++.++++.|.+.. .....+. ...++++|.+.+|.++..... .....+...+. +..+++..|.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~-~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA-LLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH-HHHHHHhccchhhHHHHHHhcCcch
Confidence 345566666666665431 1111122 345566666666654422111 11122333333 4445665555542
Q ss_pred ccCC---ccccCcccccCeeeecCcccccCcc----hhccCCCCCCEEEcCCccCCCccc----hhccccCCCCeeecCC
Q 038106 151 ILPK---TSIGNLSHSLEDFKMHNCNVSGGIP----EEISNLTNLTTIDLGGNMLNGSIP----ITLSKLQKLQGLRFED 219 (349)
Q Consensus 151 ~~~~---~~~~~~~~~l~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~ 219 (349)
..-. ..+......++.+++..|.+++... ..+..+++++++.++.|.+.+... ..+.....+.++.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 2000 0011111244555555555553322 223344555556665555543221 1122223444444443
Q ss_pred CcCCCCCch-----hhccCCcccEEEcCCCccCCCChh----hhhCC-CCCceEecCCccCCc-----CCcccccCCCcc
Q 038106 220 NKLEGSIPD-----SICRLTELYELELGGNKLFGSIPA----CFSNL-ASLRILSLGSNELTS-----IPLTFWNLNNIL 284 (349)
Q Consensus 220 ~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~L~ 284 (349)
+......+. ....-..+.....+++...+.... ..... +.+..+++..+.+.. ++..+...+.++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~ 407 (478)
T KOG4308|consen 328 TGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLE 407 (478)
T ss_pred cCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhh
Confidence 322111110 001111111222223222211111 11111 235566666554443 444566678888
Q ss_pred EEEecCCcCCCCCCccc----c-ccccccEEEccCCeeeeccC----cccccCCCCceEecCCccccCCCC
Q 038106 285 YLNFSSNFFTAPLPLEI----G-NLKVLVGMDFSMNNFSGVIP----TEIGGLKNLEYLFLGYNRLQGSIP 346 (349)
Q Consensus 285 ~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~l~l~~~~~~~~~p 346 (349)
.+.++.|...++.+..+ . +. .++.+.++.+.+..... .....-+....+.+++|.+....|
T Consensus 408 ~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (478)
T KOG4308|consen 408 ILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIGRALA 477 (478)
T ss_pred hhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccccccC
Confidence 98888887665443322 2 34 78888888887765332 334445778888888888876665
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.18 E-value=0.0018 Score=30.69 Aligned_cols=19 Identities=68% Similarity=0.889 Sum_probs=11.5
Q ss_pred CCceEecCCccccCCCCCCC
Q 038106 330 NLEYLFLGYNRLQGSIPDSF 349 (349)
Q Consensus 330 ~L~~l~l~~~~~~~~~p~~~ 349 (349)
+|++|+|++|+++ .+|.+|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 3566666666666 555543
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.0016 Score=50.01 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=55.6
Q ss_pred CcccEEEcCCCccCCCChhhhhCCCCCceEecCCccC-Cc--CCcccccCCCccEEEecCC-cCCCCCCccccccccccE
Q 038106 234 TELYELELGGNKLFGSIPACFSNLASLRILSLGSNEL-TS--IPLTFWNLNNILYLNFSSN-FFTAPLPLEIGNLKVLVG 309 (349)
Q Consensus 234 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~--~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 309 (349)
..++.++-+++.+..+..+.+..+++++.|.+.+|.- .+ +...-.-.++|++|++++| .|++-....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3466777777777666677777777788888877743 32 2111224578888888887 566655566777888888
Q ss_pred EEccCCe
Q 038106 310 MDFSMNN 316 (349)
Q Consensus 310 L~l~~~~ 316 (349)
|.+.+-.
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8887653
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.70 E-value=4.8e-05 Score=67.97 Aligned_cols=162 Identities=24% Similarity=0.222 Sum_probs=82.6
Q ss_pred hccCCCCCCEEEcCCccCCCccchhc----ccc-CCCCeeecCCCcCCCC----CchhhccCCcccEEEcCCCccCCCC-
Q 038106 181 EISNLTNLTTIDLGGNMLNGSIPITL----SKL-QKLQGLRFEDNKLEGS----IPDSICRLTELYELELGGNKLFGSI- 250 (349)
Q Consensus 181 ~l~~~~~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~- 250 (349)
.+...+.|+.|++++|.+.+.....+ ... +.++.|.+..|.++.. ....+.....++.+++..|.+....
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 34455666666666666653322211 121 3455566666655533 2233344556666666666543111
Q ss_pred ---hhhhh----CCCCCceEecCCccCCc-----CCcccccCCC-ccEEEecCCcCCCCCCc----ccccc-ccccEEEc
Q 038106 251 ---PACFS----NLASLRILSLGSNELTS-----IPLTFWNLNN-ILYLNFSSNFFTAPLPL----EIGNL-KVLVGMDF 312 (349)
Q Consensus 251 ---~~~~~----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~-L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l 312 (349)
...+. ...++++|.+.+|.++. +...+...+. +.++++..|.+.+.... .+..+ +.++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 11122 24556667777766554 2223344444 55577777766653221 22233 45566777
Q ss_pred cCCeeeec----cCcccccCCCCceEecCCcccc
Q 038106 313 SMNNFSGV----IPTEIGGLKNLEYLFLGYNRLQ 342 (349)
Q Consensus 313 ~~~~~~~~----~~~~l~~~~~L~~l~l~~~~~~ 342 (349)
+.|.+... .+..+..++.++++.++.|++.
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 77766552 2234445566777777776654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.45 E-value=0.0083 Score=26.29 Aligned_cols=14 Identities=50% Similarity=0.494 Sum_probs=7.4
Q ss_pred CCCceEecCCcccc
Q 038106 329 KNLEYLFLGYNRLQ 342 (349)
Q Consensus 329 ~~L~~l~l~~~~~~ 342 (349)
++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35677777777765
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.30 E-value=0.014 Score=27.57 Aligned_cols=20 Identities=35% Similarity=0.482 Sum_probs=12.8
Q ss_pred cccEEEccCCeeeeccCcccc
Q 038106 306 VLVGMDFSMNNFSGVIPTEIG 326 (349)
Q Consensus 306 ~L~~L~l~~~~~~~~~~~~l~ 326 (349)
+|++|++++|+++ .+|..++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677777777776 4555454
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.0032 Score=48.49 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCceEEEccCCc-ccccccccccCCCCCCEEEcc
Q 038106 83 SKLSILEFSKNS-FSGFIPNTFGNLRNLQKLRLY 115 (349)
Q Consensus 83 ~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~ 115 (349)
++|+.|++++|+ |++.....+.++++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 445555555443 333333334444555555444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.47 E-value=0.0061 Score=48.08 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=52.6
Q ss_pred hccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCccEEEecCCcCCCCCCccccccccccE
Q 038106 230 ICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNILYLNFSSNFFTAPLPLEIGNLKVLVG 309 (349)
Q Consensus 230 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 309 (349)
+..+...+.||++.+.+. .....++.+..+.+++++.+.+.-+|..+.....+..+..++|.... .|..+.+.+.+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcch
Confidence 345556666666666543 22233444556666667666666666666666666666666666655 5556666666666
Q ss_pred EEccCCeee
Q 038106 310 MDFSMNNFS 318 (349)
Q Consensus 310 L~l~~~~~~ 318 (349)
++..++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.46 E-value=0.063 Score=25.84 Aligned_cols=12 Identities=50% Similarity=0.495 Sum_probs=4.1
Q ss_pred cccEEeccCCcC
Q 038106 60 NLERLLLWGNNF 71 (349)
Q Consensus 60 ~L~~L~l~~~~~ 71 (349)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444433
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.60 E-value=0.26 Score=24.16 Aligned_cols=14 Identities=43% Similarity=0.403 Sum_probs=8.7
Q ss_pred CCCceEecCCcccc
Q 038106 329 KNLEYLFLGYNRLQ 342 (349)
Q Consensus 329 ~~L~~l~l~~~~~~ 342 (349)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.60 E-value=0.26 Score=24.16 Aligned_cols=14 Identities=43% Similarity=0.403 Sum_probs=8.7
Q ss_pred CCCceEecCCcccc
Q 038106 329 KNLEYLFLGYNRLQ 342 (349)
Q Consensus 329 ~~L~~l~l~~~~~~ 342 (349)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666665
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.00 E-value=0.46 Score=23.35 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=12.0
Q ss_pred CCCceEecCCccccCCCCC
Q 038106 329 KNLEYLFLGYNRLQGSIPD 347 (349)
Q Consensus 329 ~~L~~l~l~~~~~~~~~p~ 347 (349)
++|++|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35677777777776 5665
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.76 E-value=0.015 Score=45.97 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=51.8
Q ss_pred hccccCCCCeeecCCCcCCCCCchhhccCCcccEEEcCCCccCCCChhhhhCCCCCceEecCCccCCcCCcccccCCCcc
Q 038106 205 TLSKLQKLQGLRFEDNKLEGSIPDSICRLTELYELELGGNKLFGSIPACFSNLASLRILSLGSNELTSIPLTFWNLNNIL 284 (349)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 284 (349)
.+......+.|+++.+.+- ....-+.-++.+..++++.+.+. ..+..+.+...++.+....|.....|.++...+.++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 3444455666666665443 12233444556666666666553 445555555566666666666666666666667777
Q ss_pred EEEecCCcCCC
Q 038106 285 YLNFSSNFFTA 295 (349)
Q Consensus 285 ~L~l~~~~~~~ 295 (349)
++++-++.+..
T Consensus 115 ~~e~k~~~~~~ 125 (326)
T KOG0473|consen 115 KNEQKKTEFFR 125 (326)
T ss_pred hhhhccCcchH
Confidence 76666666443
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.54 E-value=0.86 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.036 Sum_probs=11.5
Q ss_pred CCCCceEecCCcc
Q 038106 328 LKNLEYLFLGYNR 340 (349)
Q Consensus 328 ~~~L~~l~l~~~~ 340 (349)
|++|++|+|++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 5789999999997
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.59 E-value=2.6 Score=21.10 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=10.8
Q ss_pred CCCceEecCCcccc
Q 038106 329 KNLEYLFLGYNRLQ 342 (349)
Q Consensus 329 ~~L~~l~l~~~~~~ 342 (349)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 56788888888875
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=68.63 E-value=52 Score=29.75 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=18.2
Q ss_pred CCCEEEcCCccCCCccch--hccccCCCCeeecCC
Q 038106 187 NLTTIDLGGNMLNGSIPI--TLSKLQKLQGLRFED 219 (349)
Q Consensus 187 ~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~ 219 (349)
.++++++.+|...++... .....++.+.+++.+
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccc
Confidence 467777777666544332 233445566666654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.32 E-value=4.8 Score=19.81 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=8.1
Q ss_pred CCCceEecCCcccc
Q 038106 329 KNLEYLFLGYNRLQ 342 (349)
Q Consensus 329 ~~L~~l~l~~~~~~ 342 (349)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 35566666666654
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.45 E-value=3.7 Score=37.31 Aligned_cols=65 Identities=23% Similarity=0.187 Sum_probs=35.5
Q ss_pred cccccceeeccCceeccc-cCccccccCCcccEEeccCCcCCCccchhhcc--CCCceEEEccCCccc
Q 038106 32 NVSTLKSLELQDNSLFGS-ISSIIDVRLPNLERLLLWGNNFSGTIPRFIFN--ASKLSILEFSKNSFS 96 (349)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~ 96 (349)
+.+.+..+++++|++-.. ....+....|+|+.|+|++|.........+.+ ...|++|.+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 566677777777765322 12223345677777777777221122222322 245777777777654
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.77 E-value=2.4 Score=38.40 Aligned_cols=86 Identities=16% Similarity=0.135 Sum_probs=49.3
Q ss_pred ccCCcccEEEcCCCccCCCC-hhhh-hCCCCCceEecCCc--cCCcCCccc-ccCCCccEEEecCCcCCCCCCc---cc-
Q 038106 231 CRLTELYELELGGNKLFGSI-PACF-SNLASLRILSLGSN--ELTSIPLTF-WNLNNILYLNFSSNFFTAPLPL---EI- 301 (349)
Q Consensus 231 ~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~---~~- 301 (349)
.+.+.+..+.+++|.+.... ...+ ...|.|+.|+|++| .+....+.- .....|++|-+.||++...... .+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45677888888888764321 1112 34578888888888 333322211 1234578888888887663221 11
Q ss_pred ---cccccccEEEccCCeee
Q 038106 302 ---GNLKVLVGMDFSMNNFS 318 (349)
Q Consensus 302 ---~~~~~L~~L~l~~~~~~ 318 (349)
..+|.|..|| |..+.
T Consensus 295 ~i~~~FPKL~~LD--G~ev~ 312 (585)
T KOG3763|consen 295 AIRELFPKLLRLD--GVEVQ 312 (585)
T ss_pred HHHHhcchheeec--CcccC
Confidence 1457775555 55544
Done!